1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.structs.H5G_info_t;
import org.junit.After;
import org.junit.Before;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5Giterate {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "h5ex_g_iterate.hdf";
long H5fid = -1;
private final long _openGroup(long fid, String name) {
long gid = -1;
try {
gid = H5.H5Gopen(fid, name, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
gid = -1;
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
return gid;
}
@Before
public void openH5file()
throws HDF5LibraryException, NullPointerException {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fopen(H5_FILE, HDF5Constants.H5F_ACC_RDONLY,
HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Fopen: openH5file: " + err);
}
}
@After
public void deleteH5file() throws HDF5LibraryException {
if (H5fid > 0) {
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
}
System.out.println();
}
@Test
public void testH5Gget_obj_info_all() {
H5G_info_t info = null;
long gid = _openGroup(H5fid, "/");
try {
info = H5.H5Gget_info(gid);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gget_info: " + err);
}
try {
H5.H5Gclose(gid);
}
catch (Exception ex) {
}
assertNotNull(info);
assertTrue("number of links is empty", info.nlinks > 0);
String objNames[] = new String[(int) info.nlinks];
int objTypes[] = new int[(int) info.nlinks];
int lnkTypes[] = new int[(int) info.nlinks];
long objRefs[] = new long[(int) info.nlinks];
int names_found = 0;
try {
names_found = H5.H5Gget_obj_info_all(H5fid, "/", objNames,
objTypes, lnkTypes, objRefs, HDF5Constants.H5_INDEX_NAME);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gget_obj_info_all: " + err);
}
assertTrue("number found[" + names_found + "] different than expected["
+ objNames.length + "]", names_found == objNames.length);
for (int i = 0; i < objNames.length; i++) {
assertNotNull("name #" + i + " does not exist", objNames[i]);
assertTrue(objNames[i].length() > 0);
if (objTypes[i]==HDF5Constants.H5O_TYPE_GROUP) {
assertTrue("Group is index: "+i + " ",i==2);
assertTrue("Group is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("G1")==0);
}
else if (objTypes[i]==HDF5Constants.H5O_TYPE_DATASET) {
assertTrue("Dataset is index: "+i + " ",(i==0)||(i==3));
if(i==0)
assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DS1")==0);
else
assertTrue("Dataset is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("L1")==0);
}
else if (objTypes[i]==HDF5Constants.H5O_TYPE_NAMED_DATATYPE) {
assertTrue("Datatype is index: "+i + " ",i==1);
assertTrue("Datatype is : "+objNames[i] + " ",objNames[i].compareToIgnoreCase("DT1")==0);
}
else {
fail(" Unknown at index: " + i + " " + objNames[i]);
}
}
}
}
|