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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
package test;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.io.File;
import hdf.hdf5lib.H5;
import hdf.hdf5lib.HDF5Constants;
import hdf.hdf5lib.exceptions.HDF5Exception;
import hdf.hdf5lib.exceptions.HDF5LibraryException;
import hdf.hdf5lib.exceptions.HDF5FunctionArgumentException;
import org.junit.After;
import org.junit.Before;
import org.junit.Ignore;
import org.junit.Rule;
import org.junit.Test;
import org.junit.rules.TestName;
public class TestH5R {
@Rule public TestName testname = new TestName();
private static final String H5_FILE = "testH5R.h5";
private static final int DIM_X = 4;
private static final int DIM_Y = 6;
long H5fid = -1;
long H5dsid = -1;
long H5did = -1;
long H5gid = -1;
long H5did2 = -1;
long[] H5dims = { DIM_X, DIM_Y };
int[][] dset_data = new int[DIM_X][DIM_Y];
int FILLVAL = 99;
private final void _deleteFile(String filename) {
File file = null;
try {
file = new File(filename);
}
catch (Throwable err) {}
if (file.exists()) {
try {file.delete();} catch (SecurityException e) {e.printStackTrace();}
}
assertFalse("TestH5R._deleteFile file still exists ", file.exists());
}
private final long _createDataset(long fid, long dsid, String name, long dapl) {
long did = -1;
try {
did = H5.H5Dcreate(fid, name,
HDF5Constants.H5T_STD_I32BE, dsid,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT, dapl);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Dcreate: " + err);
}
assertTrue("TestH5R._createDataset: ", did > 0);
return did;
}
private final long _createGroup(long fid, String name) {
long gid = -1;
try {
gid = H5.H5Gcreate(fid, name, HDF5Constants.H5P_DEFAULT,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("H5.H5Gcreate: " + err);
}
assertTrue("TestH5R._createGroup: ",gid > 0);
return gid;
}
@Before
public void createH5file()
throws NullPointerException, HDF5Exception {
assertTrue("H5 open ids is 0",H5.getOpenIDCount()==0);
System.out.print(testname.getMethodName());
try {
H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC,
HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT);
H5dsid = H5.H5Screate_simple(2, H5dims, null);
H5gid = _createGroup(H5fid, "Group1");
H5did2 = _createDataset(H5gid, H5dsid, "dset2", HDF5Constants.H5P_DEFAULT);
H5did = _createDataset(H5fid, H5dsid, "dset", HDF5Constants.H5P_DEFAULT);
// Initialize the dataset.
for (int indx = 0; indx < DIM_X; indx++)
for (int jndx = 0; jndx < DIM_Y; jndx++)
dset_data[indx][jndx] = FILLVAL;
try {
if (H5did >= 0)
H5.H5Dwrite(H5did, HDF5Constants.H5T_NATIVE_INT,
HDF5Constants.H5S_ALL, HDF5Constants.H5S_ALL,
HDF5Constants.H5P_DEFAULT, dset_data[0]);
}
catch (Exception e) {
e.printStackTrace();
}
}
catch (Throwable err) {
err.printStackTrace();
fail("TestH5R.createH5file: " + err);
}
assertTrue("TestH5R.createH5file: H5.H5Fcreate: ",H5fid > 0);
assertTrue("TestH5R.createH5file: H5.H5Screate_simple: ",H5dsid > 0);
assertTrue("TestH5R.createH5file: _createDataset: ",H5did > 0);
H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
}
@After
public void deleteH5file() throws HDF5LibraryException {
if (H5dsid > 0)
try {H5.H5Sclose(H5dsid);} catch (Exception ex) {}
if (H5did > 0)
try {H5.H5Dclose(H5did);} catch (Exception ex) {}
if (H5fid > 0)
try {H5.H5Fclose(H5fid);} catch (Exception ex) {}
if (H5gid > 0)
try {H5.H5Gclose(H5gid);} catch (Exception ex) {}
if (H5did2 > 0)
try {H5.H5Dclose(H5did2);} catch (Exception ex) {}
_deleteFile(H5_FILE);
System.out.println();
}
// Test v1.8 APIs params
/*
* @Ignore public void testH5Rget_name() { long loc_id = H5fid; int ref_type =
* HDF5Constants.H5R_OBJECT; long ret_val = -1; byte[] ref = null; String[] name = {""}; String
* objName = "/dset";
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name:H5Rcreate " + err); }
*
* try { ret_val = H5.H5Rget_name(loc_id, ref_type, ref, name, 16); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rget_name: " + err); }
*
* assertTrue("testH5Rget_name: H5Rget_name", ret_val>0); assertTrue("The name of the object: ",
* objName.equals(name[0])); }
*
* @Ignore public void testH5Rget_obj_type2() { int ref_type=HDF5Constants.H5R_OBJECT; byte[]
* ref=null;
*
* String objName = "/dset"; int obj_type = -1;
*
* try { ref = H5.H5Rcreate(H5fid, objName, ref_type, -1); } catch(Throwable err) {
* err.printStackTrace(); }
*
* try { obj_type = H5.H5Rget_obj_type(H5fid, HDF5Constants.H5R_OBJECT, ref); } catch (Throwable
* err) { err.printStackTrace(); fail("H5.H5Rget_obj_type2: " + err); } assertEquals(obj_type,
* HDF5Constants.H5O_TYPE_DATASET); }
*
* @Ignore public void testH5Rcreate_refobj() { byte[] ref = null;
*
* try { ref = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rcreate_regionrefobj() { byte[] ref = null; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); } catch (Throwable err) {
* err.printStackTrace(); fail("H5.H5Rcreate: " + err); } assertNotNull(ref); }
*
* @Ignore public void testH5Rdereference() { byte[] ref1 = null; byte[] ref2 = null; long
* dataset_id = -1; long group_id = -1; try { //Create reference on dataset ref1 =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dataset_id=
* H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
*
* //Create reference on group ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
* group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
* assertNotNull(ref1); assertNotNull(ref2); assertTrue(dataset_id >= 0); assertTrue(group_id >= 0);
* } catch (Throwable err) { err.printStackTrace(); fail("TestH5Rdereference " + err); } finally {
* try {H5.H5Dclose(dataset_id);} catch (Exception ex) {} try {H5.H5Gclose(group_id);} catch
* (Exception ex) {} } }
*
* @Ignore public void testH5Rget_region() { byte[] ref = null; long dsid = -1; try { ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); dsid =
* H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref); assertNotNull(ref);
* assertTrue(dsid >= 0); } catch (Throwable err) { err.printStackTrace();
* fail("TestH5Rget_region: " + err); } finally { try {H5.H5Sclose(dsid);} catch (Exception ex) {} }
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rget_name_Invalidreftype()
* throws Throwable { byte[] ref = null; String[] name = {""}; ref = H5.H5Rcreate(H5fid, "/dset",
* HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_name(H5fid, HDF5Constants.H5R_DATASET_REGION, ref, name,
* 16); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rget_name_NULLreference()
* throws Throwable { byte[] ref = null; String[] name = {""}; H5.H5Rget_name(H5fid,
* HDF5Constants.H5R_OBJECT, ref, name, 16); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void
* testH5Rget_obj_type2_Invalidreftype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, -1); H5.H5Rget_obj_type(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_InvalidObjectName()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/GROUPS", HDF5Constants.H5R_OBJECT, -1); }
*
* @Ignore//(expected = HDF5LibraryException.class) public void testH5Rcreate_Invalidspace_id()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, -1);
* }
*
* @Ignore//(expected = IllegalArgumentException.class) public void testH5Rcreate_Invalidreftype()
* throws Throwable { byte[] ref=H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_BADTYPE, -1); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Invalidreftype() throws Throwable { byte[] ref = null; ref = H5.H5Rcreate(H5fid,
* "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_DATASET_REGION, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rgetregion_Badreferencetype() throws Throwable { byte[] ref = null; ref =
* H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_OBJECT, H5dsid); H5.H5Rget_region(H5fid,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rgetregion_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION,
* ref); }
*
* @Ignore//(expected = NullPointerException.class) public void testH5Rdereference_Nullreference()
* throws Throwable { byte[] ref = null; H5.H5Rdereference(H5did2, HDF5Constants.H5P_DEFAULT,
* HDF5Constants.H5R_OBJECT, ref); }
*
* @Ignore//(expected = IllegalArgumentException.class) public void
* testH5Rdereference_Invalidreference() throws Throwable { byte[] ref1 = null; byte[] ref2 = null;
* ref1 = H5.H5Rcreate(H5fid, "/dset", HDF5Constants.H5R_DATASET_REGION, H5dsid); ref2 =
* H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1); H5.H5Rdereference(H5gid,
* HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref1); }
*/
// Test v1.12 APIs params
@Test
public void testH5Rget_object() {
int ref_type = HDF5Constants.H5R_OBJECT2;
long ret_val = -1;
byte[] ref = null;
String name = "";
String objName = "/dset";
try {
ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rcreate_object " + err);
}
try {
ret_val = H5.H5Rget_type(ref);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rget_type: " + err);
}
assertTrue("testH5Rget_object: H5Rget_type", ret_val == ref_type);
try {
name = H5.H5Rget_file_name(ref);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rget_file_name: " + err);
}
assertTrue("testH5Rget_object: H5Rget_file_name", H5_FILE.equals(name));
try {
name = H5.H5Rget_obj_name(ref, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rget_obj_name: " + err);
}
assertTrue("The name of the object: ", objName.equals(name));
}
@Test
public void testH5Rget_obj_type3() {
int obj_type = -1;
byte[] ref = null;
String objName = "/dset";
try {
ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5Rcreate_object " + err);
}
try {
obj_type = H5.H5Rget_obj_type3(ref, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_obj_type3: H5.H5Rget_obj_type3: " + err);
}
assertEquals(obj_type, HDF5Constants.H5O_TYPE_DATASET);
}
@Test
public void testH5Rcreate_regionref_object() {
byte[] ref = null;
String objName = "/dset";
long start[] = {2,2}; // Starting location of hyperslab
long stride[] = {1,1}; // Stride of hyperslab
long count[] = {1,1}; // Element count of hyperslab
long block[] = {3,3}; // Block size of hyperslab
// Select 3x3 hyperslab for reference
try {
H5.H5Sselect_hyperslab(H5dsid, HDF5Constants.H5S_SELECT_SET, start, stride, count, block);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Sselect_hyperslab " + err);
}
try {
ref = H5.H5Rcreate_region(H5fid, objName, H5dsid, HDF5Constants.H5P_DEFAULT);
}
catch (Throwable err) {
err.printStackTrace();
fail("testH5Rget_object: H5Rcreate_region " + err);
}
assertNotNull(ref);
}
// These tests need to be updated with new APIs
// @Test//
// public void testH5Rget_group() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dataset_id= H5.H5Rdereference(H5fid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_DATASET_REGION, ref1);
//
// //Create reference on group
// ref2 = H5.H5Rcreate(H5gid, "/Group1", HDF5Constants.H5R_OBJECT, -1);
// group_id= H5.H5Rdereference(H5gid, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5R_OBJECT, ref2);
// assertNotNull(ref1);
// assertNotNull(ref2);
// assertTrue(dataset_id >= 0);
// assertTrue(group_id >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rdereference " + err);
// }
// finally {
// try {H5.H5Dclose(dataset_id);} catch (Exception ex) {}
// try {H5.H5Gclose(group_id);} catch (Exception ex) {}
// }
// }
// @Test//
// public void testH5Rget_region_dataset() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
// assertNotNull(ref);
// assertTrue(dsid >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rget_region: " + err);
// }
// finally {
// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
// }
// }
// @Test//
// public void testH5Rget_attr() {
// long loc_id = H5fid;
// int ref_type = HDF5Constants.H5R_OBJECT2;
// long ret_val = -1;
// byte[] ref = null;
// String name = "";
// String objName = "/dset";
//
// try {
// ref = H5.H5Rcreate_object(H5fid, objName, HDF5Constants.H5P_DEFAULT);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("testH5Rget_object: H5Rcreate_object " + err);
// }
// try {
// dsid = H5.H5Rget_region(H5fid, HDF5Constants.H5R_DATASET_REGION, ref);
// assertNotNull(ref);
// assertTrue(dsid >= 0);
// }
// catch (Throwable err) {
// err.printStackTrace();
// fail("TestH5Rget_region: " + err);
// }
// finally {
// try {H5.H5Sclose(dsid);} catch (Exception ex) {}
// }
// }
// Test parameters to H5Rcreate_object
@Test(expected = NullPointerException.class)
public void testH5Rcreate_object_Nullname() throws Throwable {
String name = null;
H5.H5Rcreate_object(H5fid, name, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Rget_name_Invalidloc() throws Throwable {
String name= "";
H5.H5Rcreate_object(-1, name, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rcreate_region
@Test(expected = NullPointerException.class)
public void testH5Rcreate_region_Nullname() throws Throwable {
String name = null;
H5.H5Rcreate_region(H5fid, name, -1, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Rcreate_region_Invalidloc() throws Throwable {
String name= "";
H5.H5Rcreate_region(-1, name, -1, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rcreate_attr
@Test(expected = NullPointerException.class)
public void testH5Rcreate_attr_Nullname() throws Throwable {
String name = null;
String attrname = "";
H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = NullPointerException.class)
public void testH5Rcreate_attr_Nullattrname() throws Throwable {
String name = "";
String attrname = null;
H5.H5Rcreate_attr(H5fid, name, attrname, HDF5Constants.H5P_DEFAULT);
}
@Test(expected = HDF5FunctionArgumentException.class)
public void testH5Rcreate_attr_Invalidloc() throws Throwable {
String name= "";
String attrname= "";
H5.H5Rcreate_attr(-1, name, attrname, HDF5Constants.H5P_DEFAULT);
}
// Test parameters to H5Rdestroy
@Test(expected = NullPointerException.class)
public void testH5Rdestroy_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rdestroy(ref);
}
// Test parameters to H5Rget_type
@Test(expected = NullPointerException.class)
public void testH5Rget_type_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rget_type(ref);
}
// Test parameters to H5Requal
@Test(expected = NullPointerException.class)
public void testH5Requal_Nullref1() throws Throwable {
byte[] ref1 = null;
byte[] ref2 = {0,0,0,0};
H5.H5Requal(ref1, ref2);
}
@Test(expected = NullPointerException.class)
public void testH5Requal_Nullref2() throws Throwable {
byte[] ref1 = {0,0,0,0};
byte[] ref2 = null;
H5.H5Requal(ref1, ref2);
}
// Test parameters to H5Rcopy
@Test(expected = NullPointerException.class)
public void testH5Rcopy_Nullref1() throws Throwable {
byte[] ref1 = null;
byte[] ref2 = H5.H5Rcopy(ref1);
}
// Test parameters to H5Ropen_object
@Test(expected = NullPointerException.class)
public void testH5Ropen_object_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Ropen_object(ref, -1, -1);
}
// Test parameters to H5Ropen_region
@Test(expected = NullPointerException.class)
public void testH5Ropen_region_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Ropen_region(ref, -1, -1);
}
// Test parameters to H5Ropen_attr
@Test(expected = NullPointerException.class)
public void testH5Ropen_attr_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Ropen_attr(ref, -1, -1);
}
// Test parameters to H5Rget_obj_type3
@Test(expected = NullPointerException.class)
public void testH5Rget_obj_type3_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rget_obj_type3(ref, -1);
}
// Test parameters to H5Rget_file_name
@Test(expected = NullPointerException.class)
public void testH5Rget_file_name_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rget_file_name(ref);
}
// Test parameters to H5Rget_obj_name
@Test(expected = NullPointerException.class)
public void testH5Rget_obj_name_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rget_obj_name(ref, -1);
}
// Test parameters to H5Rget_attr_name
@Test(expected = NullPointerException.class)
public void testH5Rget_attr_name_Nullref() throws Throwable {
byte[] ref = null;
H5.H5Rget_attr_name(ref);
}
}
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