1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* (C) 1995-2001 Clemson University and Argonne National Laboratory.
*
* See COPYING in top-level directory.
*
* This is contributed by Robert Ross to the HDF5 software.
* and was called mpi-io-test.c
*/
#include "hdf5.h"
#include "H5private.h"
#ifdef H5_HAVE_PARALLEL
/* mpi-perf.c
*
* This is derived from code given to me by Rajeev Thakur. Dunno where
* it originated.
*
* It's purpose is to produce aggregate bandwidth numbers for varying
* block sizes, number of processors, an number of iterations.
*
* This is strictly an mpi program - it is used to test the MPI I/O
* functionality implemented by Romio.
*
* Compiling is usually easiest with something like:
* mpicc -Wall -Wstrict-prototypes mpi-io-test.c -o mpi-io-test
*
* NOTE: This code assumes that all command line arguments make it out to all
* the processes that make up the parallel job, which isn't always the case.
* So if it doesn't work on some platform, that might be why.
*/
/* Modifications:
* Albert Cheng, Apr 30, 20001
* Changed MPI_File_open to use MPI_COMM_WORLD (was MPI_COMM_SELF).
* Albert Cheng, May 5, 20001
* Changed MPI_File_seek then MPI_File_write or MPI_File_read to just
* MPI_File_write_at and MPI_File_read_at. Some compiler, e.g., IBM
* mpcc_r does not support MPI_File_seek and MPI_File_read or MPI_File_write.
*/
#include <stdio.h>
#include <stdlib.h>
#include <fcntl.h>
#include <unistd.h>
#include <errno.h>
#include <string.h>
#include <sys/time.h>
#include <mpi.h>
#ifndef MPI_FILE_NULL /*MPIO may be defined in mpi.h already */
# include <mpio.h>
#endif
/* DEFAULT VALUES FOR OPTIONS */
int64_t opt_block = 1048576*16;
int opt_iter = 1;
int opt_stripe = -1;
int opt_correct = 0;
int amode = O_RDWR | O_CREAT;
char opt_file[256] = "/tmp/test.out\0";
char opt_pvfstab[256] = "notset\0";
int opt_pvfstab_set = 0;
/* function prototypes */
static int parse_args(int argc, char **argv);
extern int errno;
/* globals needed for getopt */
extern char *optarg;
int main(int argc, char **argv)
{
char *buf, *tmp, *buf2, *tmp2, *check;
int i, j, mynod=0, nprocs=1, err, my_correct = 1, correct, myerrno;
double stim, etim;
double write_tim = 0;
double read_tim = 0;
double read_bw, write_bw;
double max_read_tim, max_write_tim;
double min_read_tim, min_write_tim;
double ave_read_tim, ave_write_tim;
int64_t iter_jump = 0;
int64_t seek_position = 0;
MPI_File fh;
MPI_Status status;
int nchars;
/* startup MPI and determine the rank of this process */
MPI_Init(&argc,&argv);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
MPI_Comm_rank(MPI_COMM_WORLD, &mynod);
/* parse the command line arguments */
parse_args(argc, argv);
if (mynod == 0) printf("# Using mpi-io calls.\n");
/* kindof a weird hack- if the location of the pvfstab file was
* specified on the command line, then spit out this location into
* the appropriate environment variable: */
#if H5_HAVE_SETENV
/* no setenv or unsetenv */
if (opt_pvfstab_set) {
if((setenv("PVFSTAB_FILE", opt_pvfstab, 1)) < 0){
perror("setenv");
goto die_jar_jar_die;
}
}
#endif
/* this is how much of the file data is covered on each iteration of
* the test. used to help determine the seek offset on each
* iteration */
iter_jump = nprocs * opt_block;
/* setup a buffer of data to write */
if (!(tmp = (char *) malloc(opt_block + 256))) {
perror("malloc");
goto die_jar_jar_die;
}
buf = tmp + 128 - (((long)tmp) % 128); /* align buffer */
if (opt_correct) {
/* do the same buffer setup for verifiable data */
if (!(tmp2 = (char *) malloc(opt_block + 256))) {
perror("malloc2");
goto die_jar_jar_die;
}
buf2 = tmp + 128 - (((long)tmp) % 128);
}
/* open the file for writing */
err = MPI_File_open(MPI_COMM_WORLD, opt_file,
MPI_MODE_CREATE | MPI_MODE_RDWR, MPI_INFO_NULL, &fh);
if (err < 0) {
fprintf(stderr, "node %d, open error: %s\n", mynod, strerror(errno));
goto die_jar_jar_die;
}
/* now repeat the write operations the number of times
* specified on the command line */
for (j=0; j < opt_iter; j++) {
/* calculate the appropriate position depending on the iteration
* and rank of the current process */
seek_position = (j*iter_jump)+(mynod*opt_block);
if (opt_correct) /* fill in buffer for iteration */ {
for (i=mynod+j, check=buf; i<opt_block; i++,check++) *check=(char)i;
}
/* discover the starting time of the operation */
MPI_Barrier(MPI_COMM_WORLD);
stim = MPI_Wtime();
/* write out the data */
nchars = opt_block/sizeof(char);
err = MPI_File_write_at(fh, seek_position, buf, nchars, MPI_CHAR, &status);
if(err){
fprintf(stderr, "node %d, write error: %s\n", mynod,
strerror(errno));
}
/* discover the ending time of the operation */
etim = MPI_Wtime();
write_tim += (etim - stim);
/* we are done with this "write" iteration */
}
err = MPI_File_close(&fh);
if(err){
fprintf(stderr, "node %d, close error after write\n", mynod);
}
/* wait for everyone to synchronize at this point */
MPI_Barrier(MPI_COMM_WORLD);
/* reopen the file to read the data back out */
err = MPI_File_open(MPI_COMM_WORLD, opt_file,
MPI_MODE_CREATE | MPI_MODE_RDWR, MPI_INFO_NULL, &fh);
if (err < 0) {
fprintf(stderr, "node %d, open error: %s\n", mynod, strerror(errno));
goto die_jar_jar_die;
}
/* we are going to repeat the read operation the number of iterations
* specified */
for (j=0; j < opt_iter; j++) {
/* calculate the appropriate spot give the current iteration and
* rank within the MPI processes */
seek_position = (j*iter_jump)+(mynod*opt_block);
/* discover the start time */
MPI_Barrier(MPI_COMM_WORLD);
stim = MPI_Wtime();
/* read in the file data */
if (!opt_correct){
err = MPI_File_read_at(fh, seek_position, buf, nchars, MPI_CHAR, &status);
}
else{
err = MPI_File_read_at(fh, seek_position, buf2, nchars, MPI_CHAR, &status);
}
myerrno = errno;
/* discover the end time */
etim = MPI_Wtime();
read_tim += (etim - stim);
if (err < 0) fprintf(stderr, "node %d, read error, loc = %Ld: %s\n",
mynod, mynod*opt_block, strerror(myerrno));
/* if the user wanted to check correctness, compare the write
* buffer to the read buffer */
if (opt_correct && memcmp(buf, buf2, opt_block)) {
fprintf(stderr, "node %d, correctness test failed\n", mynod);
my_correct = 0;
MPI_Allreduce(&my_correct, &correct, 1, MPI_INT, MPI_MIN,
MPI_COMM_WORLD);
}
/* we are done with this read iteration */
}
/* close the file */
err = MPI_File_close(&fh);
if(err){
fprintf(stderr, "node %d, close error after write\n", mynod);
}
/* compute the read and write times */
MPI_Allreduce(&read_tim, &max_read_tim, 1, MPI_DOUBLE, MPI_MAX,
MPI_COMM_WORLD);
MPI_Allreduce(&read_tim, &min_read_tim, 1, MPI_DOUBLE, MPI_MIN,
MPI_COMM_WORLD);
MPI_Allreduce(&read_tim, &ave_read_tim, 1, MPI_DOUBLE, MPI_SUM,
MPI_COMM_WORLD);
/* calculate the average from the sum */
ave_read_tim = ave_read_tim / nprocs;
MPI_Allreduce(&write_tim, &max_write_tim, 1, MPI_DOUBLE, MPI_MAX,
MPI_COMM_WORLD);
MPI_Allreduce(&write_tim, &min_write_tim, 1, MPI_DOUBLE, MPI_MIN,
MPI_COMM_WORLD);
MPI_Allreduce(&write_tim, &ave_write_tim, 1, MPI_DOUBLE, MPI_SUM,
MPI_COMM_WORLD);
/* calculate the average from the sum */
ave_write_tim = ave_write_tim / nprocs;
/* print out the results on one node */
if (mynod == 0) {
read_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_read_tim*1000000.0);
write_bw = ((int64_t)(opt_block*nprocs*opt_iter))/(max_write_tim*1000000.0);
printf("nr_procs = %d, nr_iter = %d, blk_sz = %ld\n", nprocs,
opt_iter, (long)opt_block);
printf("# total_size = %ld\n", (long)(opt_block*nprocs*opt_iter));
printf("# Write: min_time = %f, max_time = %f, mean_time = %f\n",
min_write_tim, max_write_tim, ave_write_tim);
printf("# Read: min_time = %f, max_time = %f, mean_time = %f\n",
min_read_tim, max_read_tim, ave_read_tim);
printf("Write bandwidth = %f Mbytes/sec\n", write_bw);
printf("Read bandwidth = %f Mbytes/sec\n", read_bw);
if (opt_correct) {
printf("Correctness test %s.\n", correct ? "passed" : "failed");
}
}
die_jar_jar_die:
#if H5_HAVE_SETENV
/* no setenv or unsetenv */
/* clear the environment variable if it was set earlier */
if (opt_pvfstab_set){
unsetenv("PVFSTAB_FILE");
}
#endif
free(tmp);
if (opt_correct) free(tmp2);
MPI_Finalize();
return(0);
}
static int
parse_args(int argc, char **argv)
{
int c;
while ((c = getopt(argc, argv, "s:b:i:f:p:c")) != EOF) {
switch (c) {
case 's': /* stripe */
opt_stripe = atoi(optarg);
break;
case 'b': /* block size */
opt_block = atoi(optarg);
break;
case 'i': /* iterations */
opt_iter = atoi(optarg);
break;
case 'f': /* filename */
strncpy(opt_file, optarg, 255);
break;
case 'p': /* pvfstab file */
strncpy(opt_pvfstab, optarg, 255);
opt_pvfstab_set = 1;
break;
case 'c': /* correctness */
opt_correct = 1;
break;
case '?': /* unknown */
default:
break;
}
}
return(0);
}
/*
* Local variables:
* c-indent-level: 3
* c-basic-offset: 3
* tab-width: 3
* End:
*/
#else /* H5_HAVE_PARALLEL */
/* dummy program since H5_HAVE_PARALLEL is not configured in */
int
main(int UNUSED argc, char UNUSED **argv)
{
printf("No parallel performance because parallel is not configured in\n");
return(0);
}
#endif /* H5_HAVE_PARALLEL */
|