1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
|
/*
* Copyright (C) 2001
* National Center for Supercomputing Applications
* All rights reserved.
*
*/
/*
* Parallel HDF5 Performance Testing Code
* --------------------------------------
*
* Portable code to test performance on the different platforms we support.
* This is what the report should look like:
*
* nprocs = Max#Procs
* IO Type = Raw
* # Files = 1, # of dsets = 1000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
* # Files = 1, # of dsets = 3000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
*
* . . .
*
* IO Type = MPIO
* # Files = 1, # of dsets = 1000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
* # Files = 1, # of dsets = 3000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
*
* . . .
*
* IO Type = PHDF5
* # Files = 1, # of dsets = 1000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
* # Files = 1, # of dsets = 3000, Elements per dset = 37000
* Write Results = x MB/s
* Read Results = x MB/s
*
* . . .
*
* nprocs = Max#Procs / 2
*
* . . .
*
*/
/* system header files */
#include <stdio.h>
#include <stdlib.h>
#include "hdf5.h"
#ifdef H5_HAVE_PARALLEL
/* library header files */
#include <mpi.h>
/* our header files */
#include "h5tools_utils.h"
#include "pio_perf.h"
/* useful macros */
#define TAB_SPACE 4
#define ONE_KB 1024
#define ONE_MB (ONE_KB * ONE_KB)
#define ONE_GB (ONE_MB * ONE_KB)
#define PIO_RAW 020
#define PIO_MPI 040
#define PIO_HDF5 060
#define MB_PER_SEC(bytes,t) (((bytes) / ONE_MB) / t)
#define MIN_HDF5_BUF_SIZE (ONE_MB >> 1)
#define MAX_HDF5_BUF_SIZE (ONE_GB / 2)
/* local variables */
static const char *progname = "pio_perf";
/*
* Command-line options: The user can specify short or long-named
* parameters. The long-named ones can be partially spelled. When
* adding more, make sure that they don't clash with each other.
*/
#if 1
static const char *s_opts = "hf:HP:p:X:x:md:F:i:o:r";
#else
static const char *s_opts = "hbf:HP:p:X:x:md:F:i:o:r";
#endif /* 1 */
static struct long_options l_opts[] = {
{ "help", no_arg, 'h' },
{ "hel", no_arg, 'h' },
{ "he", no_arg, 'h' },
#if 0
/* a siting of the elusive binary option */
{ "binary", no_arg, 'b' },
{ "binar", no_arg, 'b' },
{ "bina", no_arg, 'b' },
{ "bin", no_arg, 'b' },
{ "bi", no_arg, 'b' },
#endif /* 0 */
{ "file-size", require_arg, 'f' },
{ "file-siz", require_arg, 'f' },
{ "file-si", require_arg, 'f' },
{ "file-s", require_arg, 'f' },
{ "file", require_arg, 'f' },
{ "fil", require_arg, 'f' },
{ "fi", require_arg, 'f' },
{ "hdf5", no_arg, 'H' },
{ "hdf", no_arg, 'H' },
{ "hd", no_arg, 'H' },
{ "max-num-processes", require_arg, 'P' },
{ "max-num-processe", require_arg, 'P' },
{ "max-num-process", require_arg, 'P' },
{ "max-num-proces", require_arg, 'P' },
{ "max-num-proce", require_arg, 'P' },
{ "max-num-proc", require_arg, 'P' },
{ "max-num-pro", require_arg, 'P' },
{ "max-num-pr", require_arg, 'P' },
{ "max-num-p", require_arg, 'P' },
{ "min-num-processes", require_arg, 'p' },
{ "min-num-processe", require_arg, 'p' },
{ "min-num-process", require_arg, 'p' },
{ "min-num-proces", require_arg, 'p' },
{ "min-num-proce", require_arg, 'p' },
{ "min-num-proc", require_arg, 'p' },
{ "min-num-pro", require_arg, 'p' },
{ "min-num-pr", require_arg, 'p' },
{ "min-num-p", require_arg, 'p' },
{ "max-xfer-size", require_arg, 'X' },
{ "max-xfer-siz", require_arg, 'X' },
{ "max-xfer-si", require_arg, 'X' },
{ "max-xfer-s", require_arg, 'X' },
{ "max-xfer", require_arg, 'X' },
{ "max-xfe", require_arg, 'X' },
{ "max-xf", require_arg, 'X' },
{ "max-x", require_arg, 'X' },
{ "min-xfer-size", require_arg, 'x' },
{ "min-xfer-siz", require_arg, 'x' },
{ "min-xfer-si", require_arg, 'x' },
{ "min-xfer-s", require_arg, 'x' },
{ "min-xfer", require_arg, 'x' },
{ "min-xfe", require_arg, 'x' },
{ "min-xf", require_arg, 'x' },
{ "min-x", require_arg, 'x' },
{ "mpiio", no_arg, 'm' },
{ "mpii", no_arg, 'm' },
{ "mpi", no_arg, 'm' },
{ "mp", no_arg, 'm' },
{ "num-dsets", require_arg, 'd' },
{ "num-dset", require_arg, 'd' },
{ "num-dse", require_arg, 'd' },
{ "num-ds", require_arg, 'd' },
{ "num-d", require_arg, 'd' },
{ "num-files", require_arg, 'F' },
{ "num-file", require_arg, 'F' },
{ "num-fil", require_arg, 'F' },
{ "num-fi", require_arg, 'F' },
{ "num-f", require_arg, 'F' },
{ "num-iterations", require_arg, 'i' },
{ "num-iteration", require_arg, 'i' },
{ "num-iteratio", require_arg, 'i' },
{ "num-iterati", require_arg, 'i' },
{ "num-iterat", require_arg, 'i' },
{ "num-itera", require_arg, 'i' },
{ "num-iter", require_arg, 'i' },
{ "num-ite", require_arg, 'i' },
{ "num-it", require_arg, 'i' },
{ "num-i", require_arg, 'i' },
{ "output", require_arg, 'o' },
{ "outpu", require_arg, 'o' },
{ "outp", require_arg, 'o' },
{ "out", require_arg, 'o' },
{ "ou", require_arg, 'o' },
{ "raw", no_arg, 'r' },
{ "ra", no_arg, 'r' },
{ NULL, 0, '\0' }
};
struct options {
long io_types; /* bitmask of which I/O types to test */
const char *output_file; /* file to print report to */
long file_size; /* size of file */
long num_dsets; /* number of datasets */
long num_files; /* number of files */
long num_iters; /* number of iterations */
long max_num_procs; /* maximum number of processes to use */
long min_num_procs; /* minimum number of processes to use */
long max_xfer_size; /* maximum transfer buffer size */
long min_xfer_size; /* minimum transfer buffer size */
};
/* local functions */
static long parse_size_directive(const char *size);
static struct options *parse_command_line(int argc, char *argv[]);
static void run_test_loop(FILE *output, struct options *options);
static void run_test(FILE *output, iotype iot, parameters parms);
static void print_indent(register FILE *output, register int indent);
static void usage(const char *prog);
/*
* Function: main
* Purpose: Start things up. Initialize MPI and then call the test looping
* function.
* Return: EXIT_SUCCESS or EXIT_FAILURE
* Programmer: Bill Wendling, 30. October 2001
* Modifications:
*/
int
main(int argc, char **argv)
{
int world_size, ret;
int exit_value = EXIT_SUCCESS;
FILE *output = stdout;
struct options *opts;
opts = parse_command_line(argc, argv);
if (opts->output_file) {
if ((output = fopen(opts->output_file, "w")) == NULL) {
fprintf(stderr, "%s: cannot open output file\n", progname);
perror(opts->output_file);
goto onions;
}
}
/* initialize MPI and get the maximum num of processors we started with */
MPI_Init(&argc, &argv);
ret = MPI_Comm_size(MPI_COMM_WORLD, &world_size);
if (ret != MPI_SUCCESS) {
fprintf(stderr, "%s: MPI_Comm_size call failed\n", progname);
if (ret == MPI_ERR_COMM)
fprintf(stderr, "invalid MPI communicator\n");
else
fprintf(stderr, "invalid argument\n");
exit_value = EXIT_FAILURE;
goto cheese_and;
}
run_test_loop(output, opts);
cheese_and:
MPI_Finalize();
onions:
free(opts);
return exit_value;
}
/*
* Function: run_test_loop
* Purpose: Run the I/O tests. Write the results to OUTPUT.
*
* - The slowest changing part of the test is the number of
* processors to use. For each loop iteration, we divide that
* number by 2 and rerun the test.
*
* - The second slowest is what type of IO to perform. We have
* three choices: RAW, MPI-IO, and PHDF5.
*
* - Then we change the size of the buffer. This information is
* inferred from the number of datasets to create and the number
* of integers to put into each dataset. The backend code figures
* this out.
*
* Return: Nothing
* Programmer: Bill Wendling, 30. October 2001
* Modifications:
*/
static void
run_test_loop(FILE *output, struct options *opts)
{
parameters parms;
long num_procs;
int io_runs = PIO_HDF5 | PIO_MPI | PIO_RAW; /* default to run all tests */
if (opts->io_types & ~07) {
/* we want to run only a select subset of these tests */
opts->io_types = 0;
if (opts->io_types | PIO_HDF5)
io_runs |= PIO_HDF5;
if (opts->io_types | PIO_MPI)
io_runs |= PIO_MPI;
if (opts->io_types | PIO_RAW)
io_runs |= PIO_RAW;
}
parms.num_files = opts->num_files;
parms.num_dsets = opts->num_dsets;
parms.num_iters = opts->num_iters;
/* divide the maximum number of processors by 2 for each loop iter */
for (num_procs = opts->min_num_procs;
num_procs <= opts->max_num_procs; num_procs <<= 1) {
register long j;
parms.num_procs = num_procs;
fprintf(output, "Number of processors = %u\n", parms.num_procs);
for (j = opts->min_xfer_size; j <= opts->max_xfer_size; j <<= 1) {
parms.buf_size = j;
parms.num_elmts = opts->file_size / (parms.num_dsets * sizeof(int));
print_indent(output, TAB_SPACE * 1);
fprintf(output,
"# of files: %u, # of dsets: %lu, Elements per dset: %lu\n",
parms.num_files, parms.num_dsets, parms.num_elmts);
if (io_runs | PIO_RAW)
run_test(output, RAW, parms);
if (io_runs | PIO_MPI)
run_test(output, MPIO, parms);
if (io_runs | PIO_HDF5)
run_test(output, PHDF5, parms);
}
}
}
/*
* Function: run_test
* Purpose: Inner loop call to actually run the I/O test.
* Return: Nothing
* Programmer: Bill Wendling, 18. December 2001
* Modifications:
*/
static void
run_test(FILE *output, iotype iot, parameters parms)
{
results res;
parms.io_type = iot;
print_indent(output, TAB_SPACE * 2);
fprintf(output, "Type of IO = ");
switch (iot) {
case RAW:
fprintf(output, "Raw\n");
break;
case MPIO:
fprintf(output, "MPIO\n");
break;
case PHDF5:
fprintf(output, "PHDF5\n");
break;
}
/* call Albert's testing here */
res = do_pio(parms);
print_indent(output, TAB_SPACE * 3);
fprintf(output, "Write Results = %.2f MB/s\n",
MB_PER_SEC(parms.num_dsets * parms.num_elmts * sizeof(int),
get_time(res.timers, HDF5_WRITE_FIXED_DIMS)));
print_indent(output, TAB_SPACE * 3);
fprintf(output, "Read Results = %.2f MB/s\n",
MB_PER_SEC(parms.num_dsets * parms.num_elmts * sizeof(int),
get_time(res.timers, HDF5_READ_FIXED_DIMS)));
pio_time_destroy(res.timers);
}
/*
* Function: print_indent
* Purpose: Print spaces to indent a new line of text for pretty printing
* things.
* Return: Nothing
* Programmer: Bill Wendling, 29. October 2001
* Modifications:
*/
static void
print_indent(register FILE *output, register int indent)
{
for (; indent > 0; --indent)
fputc(' ', output);
}
/*
* Function: parse_command_line
* Purpose: Parse the command line options and return a STRUCT OPTIONS
* structure which will need to be freed by the calling function.
* Return: Pointer to an OPTIONS structure
* Programmer: Bill Wendling, 31. October 2001
* Modifications:
*/
static struct options *
parse_command_line(int argc, char *argv[])
{
int opt;
struct options *cl_opts;
cl_opts = (struct options *)malloc(sizeof(struct options));
cl_opts->output_file = NULL;
cl_opts->file_size = 64 * ONE_MB;
cl_opts->io_types = 07; /* bottom bits indicate default type to run */
cl_opts->num_dsets = 1;
cl_opts->num_files = 1;
cl_opts->num_iters = 1;
cl_opts->max_num_procs = 1;
cl_opts->min_num_procs = 1;
cl_opts->max_xfer_size = 1 * ONE_MB;
cl_opts->min_xfer_size = 1 * ONE_KB;
while ((opt = get_option(argc, (const char **)argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
#if 0
case 'b':
/* the future "binary" option */
break;
#endif /* 0 */
case 'd':
cl_opts->num_dsets = strtol(opt_arg, NULL, 10);
break;
case 'f':
cl_opts->file_size = parse_size_directive(opt_arg);
break;
case 'F':
cl_opts->num_files = strtol(opt_arg, NULL, 10);
break;
case 'H':
cl_opts->io_types &= ~07;
cl_opts->io_types |= PIO_HDF5;
break;
case 'i':
cl_opts->num_iters = strtol(opt_arg, NULL, 10);
break;
case 'm':
cl_opts->io_types &= ~07;
cl_opts->io_types |= PIO_MPI;
break;
case 'o':
cl_opts->output_file = opt_arg;
break;
case 'p':
cl_opts->min_num_procs = strtol(opt_arg, NULL, 10);
break;
case 'P':
cl_opts->max_num_procs = strtol(opt_arg, NULL, 10);
break;
case 'r':
cl_opts->io_types &= ~07;
cl_opts->io_types |= PIO_RAW;
break;
case 'x':
cl_opts->min_xfer_size = parse_size_directive(opt_arg);
break;
case 'X':
cl_opts->max_xfer_size = parse_size_directive(opt_arg);
break;
case 'h':
usage(progname);
exit(EXIT_SUCCESS);
case '?':
default:
/* there could be other command line options, such as MPI stuff
* that gets passed to our program, for some reason */
break;
}
}
return cl_opts;
}
/*
* Function: parse_size_directive
* Purpose: Parse the size directive passed on the commandline. The size
* directive is an integer followed by a size indicator:
*
* K, k - Kilobyte
* M, m - Megabyte
* G, g - Gigabyte
*
* Return: The size as a LONG. If an unknown size indicator is used, then
* the program will exit with EXIT_FAILURE as the return value.
* Programmer: Bill Wendling, 18. December 2001
* Modifications:
*/
static long
parse_size_directive(const char *size)
{
long s;
char *endptr;
s = strtol(size, &endptr, 10);
if (endptr && *endptr) {
while (*endptr != '\0' && (*endptr == ' ' || *endptr == '\t'))
++endptr;
switch (*endptr) {
case 'K':
case 'k':
s *= ONE_KB;
break;
case 'M':
case 'm':
s *= ONE_MB;
break;
case 'G':
case 'g':
s *= ONE_GB;
break;
default:
fprintf(stderr, "Illegal size specifier '%c'\n", *endptr);
exit(EXIT_FAILURE);
}
}
return s;
}
/*
* Function: usage
* Purpose: Print a usage message and then exit.
* Return: Nothing
* Programmer: Bill Wendling, 31. October 2001
* Modifications:
*/
static void
usage(const char *prog)
{
fflush(stdout);
fprintf(stdout, "usage: %s [OPTIONS]\n", prog);
fprintf(stdout, " OPTIONS\n");
fprintf(stdout, " -h, --help Print a usage message and exit\n");
fprintf(stdout, " -d N, --num-dsets=N Number of datasets per file [default:1]\n");
fprintf(stdout, " -f S, --file-size=S Size of a single file [default: 64M]\n");
fprintf(stdout, " -F N, --num-files=N Number of files [default: 1]\n");
fprintf(stdout, " -H, --hdf5 Run HDF5 performance test\n");
fprintf(stdout, " -i, --num-iterations Number of iterations to perform [default: 1]\n");
fprintf(stdout, " -m, --mpiio Run MPI/IO performance test\n");
fprintf(stdout, " -o F, --output=F Output raw data into file F [default: none]\n");
fprintf(stdout, " -P N, --max-num-processes=N Maximum number of processes to use [default: 1]\n");
fprintf(stdout, " -p N, --min-num-processes=N Minimum number of processes to use [default: 1]\n");
fprintf(stdout, " -r, --raw Run raw (UNIX) performance test\n");
fprintf(stdout, " -X S, --max-xfer-size=S Maximum transfer buffer size [default: 1M]\n");
fprintf(stdout, " -x S, --min-xfer-size=S Minimum transfer buffer size [default: 1K]\n");
fprintf(stdout, "\n");
fprintf(stdout, " F - is a filename.\n");
fprintf(stdout, " N - is an integer >=0.\n");
fprintf(stdout, " S - is a size specifier, an integer >=0 followed by a size indicator:\n");
fprintf(stdout, "\n");
fprintf(stdout, " K - Kilobyte\n");
fprintf(stdout, " M - Megabyte\n");
fprintf(stdout, " G - Gigabyte\n");
fprintf(stdout, "\n");
fprintf(stdout, " Example: 37M = 37 Megabytes\n");
fprintf(stdout, "\n");
fflush(stdout);
}
#else /* H5_HAVE_PARALLEL */
/*
* Function: main
* Purpose: Dummy main() function for if HDF5 was configured without
* parallel stuff.
* Return: EXIT_SUCCESS
* Programmer: Bill Wendling, 14. November 2001
* Modifications:
*/
int
main(void)
{
printf("No parallel IO performance because parallel is not configured\n");
return EXIT_SUCCESS;
}
#endif /* !H5_HAVE_PARALLEL */
|