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|
----------------------------------------------------------------------
HDF5 Build and Install Instructions for Windows XP/VISTA
----------------------------------------------------------------------
The following instructions assume that the HDF5 source code package
from the HDF website (http://hdfgroup.org) is used.
***************************WARNINGS***********************************
Please read CAREFULLY about the following preconditions and notes first.
Preconditions
~~~~~~~~~~~~~
1. Installed Microsoft Visual C++ .NET and 7zip or WinZip.
1.1 Installed Intel Fortran Compiler (9.1 or higher version),
if you want to build HDF5 Fortran libraries.
Note: 1. 7zip is an open-source alternative to WinZip. Some of the
advanced functionality is disabled in WinZip unless you buy the
software. With 7zip, most of this functionality is included for
free.
2. By default, WinZip will convert the Unix end of line format
when extracting .tar file. This conversion will cause
"false" failure in some HDF5 tools testings.
Please uncheck the "TAR file smart CR/LF conversion" option
in your WinZip to prevent the conversion when extracting
.tar file.
To uncheck the "TAR file smart CR/LF conversion" option:
Invoke WinZip, go to "Options", select "Configuration..."
Click the "Miscellaneous" tab and uncheck "TAR file smart
CR/LF conversion" option, then click OK.
2. Set up a directory structure to unpack the library. For example:
c:\ (any drive)
MyHDFstuff\ (any folder name)
3. Download the hdf5-1.6.10 source code package and use 7zip or WinZip to
extract the HDF5 package into c:\MyHDFstuff. This creates a
directory called 'hdf5-1.6.10' under MyHDFstuff which contains
several files and directories. Rename "hdf5-1.6.10" to "hdf5".
4. HDF5 provides options for in-memory compression within the HDF5
library. Currently, two external compression libraries, Zlib and
Szip, can be used with HDF5.
4.1 HDF5 uses Zlib version 1.2.3 for compression and Zlib is NOT
distributed with HDF5 library in 1.6.10 release. To use Zlib
library, you have to install your own Zlib DLL library or go
to ftp://ftp.hdfgroup.org/lib-external/zlib/1.2/bin/windows
to download the Zlib library.
4.2 HDF5 uses Szip for compression and Szip
compression software is provided with HDF5 products starting
from 1.6.0 release. To use Szip 2.1 library, you can
download Szip source codes and binaries from
ftp://ftp.hdfgroup.org/lib-external/szip/2.1/bin/windows
Please note that Szip is not a totally open-source free
software. For licensing issue of Szip, please check
"Licensing terms" at
http://hdfgroup.org/doc_resource/SZIP/index.html.
Compression in HDF5 is optional.
5. Define the following environment variables:
HDF5_EXT_ZLIB
HDF5_EXT_SZIP
In this section, the Zlib and Szip compression software are assumed
to be used. Please read section V as well as this section if you
do not want to use compression in HDF5.
To define these environment variables:
Click "Start", click "Control Panel", and then double-click
"System". On the "Advanced" tab, click "Environment Variables".
If you are logged on as administrator to the local computer AND
want to let all other users use these two environment variables,
click "New" under "System Variables" box; otherwise, click "New"
under "User Variables" box.
In the New Variable window, set "Variable name" as HDF5_EXT_ZLIB
and "Variable value" as zlib1.lib, then click OK.
Similarly, you can set:
HDF5_EXT_SZIP environment variable as szlibdll.lib
Notes:
a. You might have to close and reopen running programs for
the new environment variable settings to take effect.
b. c:\zlib123\zlib1.dll and c:\szip\dll\szlibdll.dll should
be copied into the location that the application can find,
one suggestion is to use the c:\WINNT\system or
c:\WINDOWS\system
6. Set up path for external libraries and headers
Skip this part if you don't want to use ANY compression feature
provided by HDF5. Please do read section V.
You have to read this part even if you want to only use Zlib
or Szip. You also need to read section V.
Invoke Microsoft Visual Studio and go to "Tools" and select
"Options", select Projects, find "VC++ Directories";
6.1 Find the box "Show directories for", choose
"Include files",
If you cannot find your Zlib and Szip header path
(for example, c:\zlib123\include, c:\szip\include)
from the directory list, add the header path
(c:\zlib123\include, c:\szip\include) to the
included directories.
6.2 Find the box "Show directories for", choose "Library files",
If you cannot find your Zlib and Szip library path
(for example, c:\zlib123\lib, c:\szip\dll)
from the directory list, add the library path
(c:\zlib123\lib, c:\szip\dll) to the library directories.
Notes
1. To build HDF5 C++ and Fortran libraries, please read through
this document.
2. For users who want to quickly build HDF5 library or do not
want to know HDF5 building and installation details, please
read INSATLL_Windows_Short.txt.
3. For users who would like to test the HDF5 package from the
command line, please read INSATLL_Windows_From_Command_Line.txt.
4. HDF4-related tools are not built and released with HDF5.
To obtain HDF4-related tools, please check the following locations:
http://hdfgroup.org/h4toh5/
ftp://ftp.hdfgroup.org/HDF5/h4toh5
5. For DLL users, please do read and follow "DLL hints"
at Section IV.
6. For fortran users, please read section VII.
7. We no longer support Visual Studio 6.
8. We no longer support the compaq visual fortran compiler. Compaq visual
fortran projects are still included for forward compatibility with intel
fortran 9.1.
9. For users who would like to build, test and use an HDF5 snapshot
release, please read Section VIII.
------------------------------------------------------------------------
The following sections discuss installation procedures in detail:
Section I : What do we build and install
Section II : How to build and test HDF5 libraries and tools
Section III : How to build an application using the HDF5 library
or DLL
Section IV : Helpful pointers
Section V : How to disable Gzip(Zlib)/Szip compression
Section VI : How to build HDF5 in Visual Studio 2005
Section VII : How to Build with Intel Fortran 9.1
Section VIII: How to build and test HDF5 snapshot release
Section IX : How to build HDF5 Multithreaded Static Library
Section X : Build HDF5 on Windows Vista
---------------------------------------------------------------------
Section I: What do we build and install?
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1. Build and Install
HDF5 static library:
debug and release version
HDF5 Dynamic Link Library(DLL):
debug and release version as well as export libraries for DLL
HDF5 tools:
HDF5 tools
2. Build Only (Not included in the binary distribution)
HDF5 tool library:
debug and release version
HDF5 tool export library for DLL:
debug and release version
HDF5 library testing programs:
HDF5 library comprehensive tests
HDF5 related tools testing programs:
HDF5 tools comprehensive tests
3. Examples (Not included in the binary distribution)
HDF5 examples:
Simple HDF5 C/C++/Fortran examples
Section II: How to build and test HDF5 libraries and tools
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Note: To build and test Fortran libraries, please see
Section VII.
STEP 1: Building HDF5 libraries and tools
=========================================
1. Unpack all.zip
Unpack windows\all.zip in c:\MyHDFstuff\hdf5\ directory. If
prompted to overwrite files, select "Yes to All".
2. Invoke Microsoft Visual C++ compiler
Invoke Microsoft Visual C++. From the main menu, go to "File"
and select the "Open Solution" option. Then open the
c:\MyHDFstuff\hdf5\proj\all\all.sln file.
You should find windows project files listed as "all,
big etc." in the solution explorer.
3. (Optional) HDF5 C++ libraries
3.1 Skip this step if you do not want to build HDF5 C++ libraries
Go to "Project" and select "project dependencies";
Select "all" in the "Select project to modify:" box,
then enable the desired projects:
dsets_cpp
dsets_cppdll
hdf5_cpp
hdf5_cppdll
testhdf5_cpp
testhdf5_cppdll
4. Select "Build", then Select "Configuration Manager".
In "Active Solution Configurations", select the active configuration
"Debug" to build debug versions of
single-threaded static libraries, Debug
multithreaded DLLs and tests.
or
"Release" to build release versions of
single-threaded static libraries,
multithreaded DLLs and tests.
Then build project "all".
Warning messages can be ignored.
When the debug or release build is done the directories
listed below will contain the following files:
c:\MyHDFstuff\hdf5\proj\hdf5\debug -
hdf5d.lib- the hdf5 static library
c:\MyHDFstuff\hdf5\proj\hdf5\release -
hdf5.lib- the hdf5 static library
c:\MyHDFstuff\hdf5\proj\hdf5dll\debug -
hdf5ddll.dll- DLL
hdf5ddll.lib- the DLL export library
c:\MyHDFstuff\hdf5\proj\hdf5dll\release -
hdf5dll.dll- DLL
hdf5dll.lib- the DLL export library
c:\MyHDFstuff\hdf5\test\libtest\debug -
and c:\MyHDFstuff\hdf5\test\libtest\release -
libtest.lib - the internal library for test
c:\MyHDFstuff\hdf5\test\libtestD\debug -
libtestD.dll - the internal DLL for test
libtestD.lib - the internal DLL export library for test
c:\MyHDFstuff\hdf5\test\libtestD\release -
libtestD.dll - the internal DLL for test
libtestD.lib - the internal DLL export library for test
c:\MyHDFstuff\hdf5\tools\toolslib\debug -
and c:\MyHDFstuff\hdf5\tools\toolslib\release -
toolslib.lib- the internal tools library
c:\MyHDFstuff\hdf5\tools\toolslibD\debug -
and c:\MyHDFstuff\hdf5\tools\toolslibD\release -
toolslibD.dll- DLL
toolslibD.lib- the internal DLL export library for tools
c:\MyHDFstuff\hdf5\tools\"tools directory"-
where tools are located
The directories listed below will contain the following files
ONLY when you choose to build HDF5 C++ libraries:
c:\MyHDFstuff\hdf5\proj\hdf5_cpp\debug -
hdf5_cppd.lib- the HDF5 C++ API static library
c:\MyHDFstuff\hdf5\proj\hdf5_cpp\release -
hdf5_cpp.lib- the HDF5 C++ API static library
c:\MyHDFstuff\hdf5\proj\hdf5_cppdll\debug -
hdf5_cppddll.dll- the HDF5 C++ API DLL
hdf5_cppddll.lib- the C++ API DLL export library
c:\MyHDFstuff\hdf5\proj\hdf5_cppdll\release -
hdf5_cppdll.dll- the HDF5 C++ API DLL
hdf5_cppdll.lib- the C++ API DLL export library
STEP 2: Testing HDF5 libraries and tools
========================================
HDF5 libraries and tools should be tested to make sure that they
were built correctly.
We provide 2 options for users to test HDF5 libraries and tools.
<<---Option 1: Automatic testings--->>
HDF5 comes with various test suites, all of which can be tested
with hdf5check.bat batch file in c:\MyHDFstuff\hdf5 directory.
To use automatic testing batch file, you must build both HDF5
release and debug libraries.
hdf5check batch file can be run with one of the following four
options:
hdf5check test HDF5 C library and tools only
hdf5check enablecpp test HDF5 C/C++ libraries and tools
To use this option, HDF5 C++
libraries must have been built
in step I.
hdf5check enablefortran test HDF5 C/Fortran libraries and
tools
To use this option, HDF5 Fortran
libraries must have been built
in Section VII.
hdf5check enableall test HDF5 C/C++/Fortran libraries
and tools
To use this option, HDF5 C++ and
Fortran libraries must have been
built in Step I and Section VII.
Invoke a command prompt window and run hdf5check with appropriate
option.
Test results are saved in two files:
c:\MyHDFstuff\hdf5\check_results.txt
c:\MyHDFstuff\hdf5\tests_results.txt.
In general, you only need to check tests_results.txt. If all the
tests passed, then you do not have to check check_results.txt.
If some tests failed, check check_results.txt can help you
figure out what was wrong.
<<---Option 2: Step-by-step HDF5 libraries and tools testings--->>
You can also test HDF5 libraries and tools one by one. There are
possibly four versions of HDF5 libraries and tools testings.
They are:
release version
release dll version
debug version
debug dll version
We strongly suggest that you redirect your testing results into an
output file so that you can easily check the testing results. You
may use either Notepad or WordPad or whatever other windows word
processor to check the results. For printing purposes, please
choose a font less than 14 for better alignment of the text.
DLLs listed below should be placed into the Windows system
directory. A batch file named install_dll.bat is included in
c:\MyHDFstuff\hdf5 directory. Run this batch file and the
following HDF5 DLLs will be copied to the system directory.
hdf5\proj\hdf5dll\release\hdf5dll.dll
hdf5\proj\hdf5dll\debug\hdf5ddll.dll
hdf5\test\libtestD\release\libtestD.dll
hdf5\test\libtestD\debug\libtestDd.dll
1. HDF5 library testing
cd into the hdf5\test directory.
(1) basic tests
Go to a) b) c) or d) to test your chosen version
a) release static version
type:
hdf5test release >"Your output filename"
b) release dll version
type:
hdf5test release dll > "Your output filename"
c) debug static version
type:
hdf5test debug >"Your output filename"
d) debug dll version
type:
hdf5test debug dll >"Your output filename"
(2) timing tests
Go to a) b) c) or d) to test your chosen version
a) release static version
type:
hdf5timingtest release >"Your output filename"
b) release dll version
type:
hdf5timingtest release dll >"Your output filename"
c) debug static version
type:
hdf5timingtest debug >"Your output filename"
d) debug dll version
type:
hdf5timingtest debug dll >"Your output filename"
Use Notepad or WordPad to check results. You should
not find any FAILED marks in your output files.
2. HDF5 tools testing
To test HDF5 tools, cd back into hdf5 directory and then cd into
tools directory(c:\MyHDFstuff\hdf5\tools). The HDF5 tools testing
results are saved into output files in tools directory by the
testhdf5tools.bat as described below.
Go to a) b) c) or d) to test your chosen version
a) release static version
type:
testhdf5tools release
output file: toolstest_release.txt
b) release dll version
type:
testhdf5tools release dll
output file: toolstest_releasedll.txt
c) debug static version
type:
testhdf5tools debug
output file: toolstest_debug.txt
d) debug dll version
type:
testhdf5tools debug dll
output file: toolstest_debugdll.txt
Use Notepad or WordPad to check results. You should
not find any FAILED marks in your output files.
3. HDF5 C++ library test
Skip this step UNLESS you have built HDF5 C++ libraries
and want to test them.
DLLs listed below should be placed in the Windows system
directory. A batch file named install_cppdll.bat is included in
c:\MyHDFstuff\hdf5 directory. Run this batch file and the
following HDF5 C++ DLLs will be copied to the system directory.
hdf5\proj\hdf5_cppdll\release\hdf5_cppdll.dll
hdf5\proj\hdf5_cppdll\debug\hdf5_cppddll.dll
Run hdf5cpptest.bat in the hdf5\c++\test directory at the
command prompt as below:
hdf5cpptest release >"Your output filename"
hdf5cpptest release dll >"Your output filename"
hdf5cpptest debug >"Your output filename"
hdf5cpptest debug dll >"Your output filename"
Use Notepad or WordPad to check results. You should
not find any FAILED marks in your output files.
STEP 3: Installing HDF5 Libraries
=================================
We provide a batch file for users to relocate all HDF5 libraries
in one folder (C++ and Fortran libraries will also be copied
into this folder if they have been built in step I and Section VII,
respectively). The file is called installhdf5lib.bat under
c:\MyHDFstuff\hdf5 directory. Run the batch file, you may see a
folder called hdf5lib under c:\MyHDFstuff\hdf5.
The <release> layout of <hdf5lib> should be:
release\include -- HDF5 header files
release\bin -- HDF5 static tool executables
release\bindll -- HDF5 DLL tool executables
release\lib -- HDF5 static libraries
release\dll -- HDF5 DLLs
You may also find the similar layout for the <debug>.
STEP 4: Building HDF5 C/C++ examples (Optional)
=======================================================
Simple examples have been provided for users to test HDF5
C/C++ library and tools.
Note:
1) To build HDF5 C++ examples, HDF5 C++ library must have been
built in step I.
2) To build HDF5 Fortran examples, please seee Section VII, step 3.
3) To build HDF5 HL C examples, HDF5 HL library must have been
built in step I.
4) By default, the debug versions of HDF5 C/C++ examples
are linked with the debug versions of HDF5 C/C++
libraries and DLLs. The debug versions of HDF5 C/C++
examples will fail if they are linked with HDF5 binary
distribution, which only includes the release versions of
HDF5 C/C++ libraries and DLLs.
<<---To build and test HDF5 C examples--->>
1. Invoke Microsoft Visual C++, go to "File" and select
the "Open Solution" option.
Then open the workspace
c:\MyHDFstuff\hdf5\examples\allexamples\allexamples.sln.
2. Select "Build", then Select "Configuration Manager".
In "Active Solution Configurations", select the active configuration
"Debug" to build debug versions of the C examples.
and
"Release" to build release versions the C examples.
When the debug build or release build is done, there should be the
following subdirectories in c:\MyHDFstuff\hdf5\examples\
attributetest
attributetestdll
chunkread
chunkreaddll
compoundtest
compoundtestdll
extendwritetest
extendwritetestdll
grouptest
grouptestdll
readtest
readtestdll
selecttest
selecttestdll
writetest
writetestdll
3. Invoke a command prompt window and run the batch file
InstallExamples.bat which resides in the top level directory
(c:\MyHDFstuff\hdf5). This file creates 4 new directories,
examplesREL, examplesRELDLL, examplesDBG, and examplesDBGDLL,
in the c:\MyHDFstuff\hdf5\examples directory and places all the
executables in it. Both the release and debug versions of the
examples should be built before this step is done.
4. We provide a batch file named testExamples.bat and an expected
examples tests output file named testExamples_exp_output.txt
in c:\MyHDFstuff\hdf5\examples directory for you to test HDF5
C examples. You need to run InstallExamples.bat before running
testExamples.bat.
testExamples.bat batch file has 4 options:
testExamples release -- for release version
testExamples release dll -- for release DLL version
testExamples debug -- for debug version
testExamples debug dll -- for debug DLL version
Invoke a command prompt window and run testExamples with
appropriate options. You should get "All HDF5 C examples tests
passed." when the C examples are built successfully. Otherwise,
the difference between the expected outputs and actual outputs
will be given.
<<---To build and test HDF5 C++ examples--->>
1. Invoke Microsoft Visual C++, go to "File" and select
the "Open Solution" option.
Then open the workspace
c:\myHDFstuff\hdf5\c++\examples\allcppexamples\allcppexamples.sln.
2. Select "Build", then Select "Configuration Manager".
In "Active Solution Configurations", select the active configuration
"Debug" to build debug versions of the C++ examples.
and
"Release" to build release versions the C++ examples.
When the debug build or release build is done, there should be
the following subdirectories in
c:\MyHDFstuff\hdf5\c++\examples\
chunkstest
chunkstestdll
compoundtest
compoundtestdll
createtest
createtestdll
extend_dstest
extend_dstestdll
h5grouptest
h5grouptestdll
readdatatest
readdatatestdll
writedatatest
writedatatestdll
3. Invoke a command prompt window and run the batch file
InstallcppExamples.bat which resides in the top level directory
(c:\MyHDFstuff\hdf5). This file creates 4 new directories,
cppexamplesREL, cppexamplesRELDLL, cppexamplesDBG,
and cppexamplesDBGDLL, in the c:\MyHDFstuff\c++\examples
directory and places all the executables in it. Both the
release and debug versions of the examples should be built
before this step is done.
4. We provide a batch file named testcppExamples.bat in
c:\MyHDFstuff\hdf5\c++\examples directory for you to test HDF5
C++ examples. You should run InstallcppExamples.bat before
running testcppExamples.bat.
testcppExamples.bat batch file has 4 options:
testcppExamples release -- for release version
testcppExamples release dll -- for release DLL version
testcppExamples debug -- for debug version
testcppExamples debug dll -- for debug DLL version
Invoke a command prompt window and run testcppExamples with
appropriate options. You should get "All HDF5 C++ examples
tests passed." when the C++ examples are built successfully.
Otherwise, the difference between the expected outputs and
actual outputs will be given.
<<----To build and test HDF5 HL C examples--->>
1. Invoke Microsoft Visual C++, go to "File" and select
the "Open Workspace" option.
Then open the workspace
c:\MyHDFstuff\hdf5\hl\examples\allhlcexamples\allhlcexamples.dsw.
2. Select "Build", then Select "Configuration Manager".
In "Active Solution Configurations", select the active configuration
"Debug" to build debug versions of the HL C examples.
and
"Release" to build release versions the HL C examples.
When the debug build or release build is done, there should be the
following subdirectories in c:\MyHDFstuff\hdf5\hl\examples
ex_images
ex_imagesdll
ex_lite
ex_litedll
ex_table
ex_tabledll
3. We provide a batch file
c:\MyHDFstuff\hdf5\hl\examples\test_hlcexamples.bat to test HL C
examples.
testhlcexamples.bat batch file has 4 options:
testhlcexamples release -- for release version
testhlcexamples release dll -- for release DLL version
testhlcexamples debug -- for debug version
testhlcexamples debug dll -- for debug DLL version
Invoke a command prompt window and run testhlcexamples.bat with
appropriate options.
If you get messages:
"All of the HL C Examples Passed!"
All of the HL C examples are built successfully.
If you get messages:
"Some HL C Examples Failed!"
One or more of the HL C examples Failed.
Section III: Building an application using the HDF5 library or DLL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Waring: The instructions below will only describe how to build an
application using the release version of the HDF5 library
or DLL. To use the debug version of the HDF5 library or
DLL, you need to substitute the release version of the
HDF5 library or DLL with the debug version.
To use HDF5 static library
==========================
To build an application that uses the HDF5 static library the
following locations will need to be specified for locating header
files and linking with the HDF static library, for example:
c:\MyHDFstuff\hdf5\hdf5lib\include
c:\MyHDFstuff\hdf5\hdf5lib\release\lib
if you have installed HDF5 library in Section II, step 3.
We assume that you will use Zlib and Szip compression with HDF5
library.
To specify these locations in the settings for your VC++ project,
you may choose one of the following two methods.
1) Method One
Step 1:
To insert the path that specifies HDF5 and Zlib, Szip header files:
1. Open your VC++ project in Microsoft Visual C++ and make sure it
is the active project.
2. Go to the Project menu and chose the "Settings" option.
3. Choose the build configuration you would like to modify in the
drop down menu labeled with "Settings For:"
4. Choose the C/C++ tab
5. Choose "Preprocessor" in the drop down menu labeled with
"Category:"
6. In a text-area labeled with "Additional include directories:",
add HDF5, Zlib, and Szip header files directories. For example:
c:\MyHDFstuff\hdf5\hdf5lib\include
c:\zlib123\include
c:\szip\include
Then click OK.
7. (optional) To use HDF5 Fortran static library, the location of
Fortran module files should be specified by following
Project->Settings->Fortran->Preprocessor,
and in a test-area labeled with "INCLUDE and USE Paths:", add
HDF5 Fortran module files directories. For example:
c:\MyHDFstuff\hdf5\hdf5lib\include
Step 2:
To link the HDF5 library with your application:
1. Open your VC++ project in Microsoft Visual C++ and make sure it
is the active project.
2. Go to the Project menu and chose the "Add to Project" option and
then "Files" option.
3. Change the "Files of type:" to "Library Files (.lib)"
4. Navigate through the directories until you find the location of
the hdf5.lib.
5. Select hdf5.lib and click OK.
6. repeat 1-5, to select zdll.lib and szlibdll.lib.
7. (optional) repeat 1-5, to select hdf5_cpp.lib to link with HDF5
C++ static library.
8. (optional) repeat 1-5, to select hdf5_fortran.lib to link with
HDF5 Fortran static library.
2) Method Two
1. Go to Tools->Options->Directories,
2. Insert the correct HDF5, Zlib, Szip paths for both headers
(include) and libraries. For example,
c:\MyHDFstuff\hdf5\hdf5lib\include
c:\MyHDFstuff\hdf5\hdf5lib\lib
c:\zlib123\include
c:\zlib123\lib
c:\szip\include
c:\szip\dll
3. Go to the Project menu and choose the "Settings" option.
4. Find the "link" option and "Input" category, insert
"zdll.lib, szlibdll.lib, hdf5.lib".
5. (Optional) repeat 3-4, to insert "hdf5_cpp.lib" if you want to
use HDF5 C++ static library.
6. (Optional) repeat 3-4, to insert "hdf5_fortran.lib" if you want
to use HDF5 Fortran static library.
To use the DLL:
1. Follow the steps for specifying the location of the header files
as shown above.
2. Follow the steps for linking the HDF5 library as shown above
except now link the export library that is created with the DLL.
The export library is called hdf5dll.lib for HDF5 C libray,
hdf5_cppdll.lib for HDF5 C++ library, and hdf5_fortrandll.lib
for HDF5 Fortran library.
3. Place the DLL in a location that Windows will be able to
locate it. The searched path and order for DLL's is
a) The directory where the executable module for the current
process is located.
b) The current directory.
c} The Windows system directory. The GetSystemDirectory
function retrieves the path of this directory.
d) The Windows directory. The GetWindowsDirectory function
retrieves the path of this directory.
e) The directories listed in the PATH environment variable.
4. To modify your own application settings, please DO FOLLOW the
"DLL Hints" at section IV "HELPFUL POINTERS".
Section IV: HELPFUL POINTERS
~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Here are some notes that may be of help if you are not familiar
with using the Visual C++ Development Environment.
Project name and location issues:
If you must install all.sln and all.vcproj in another directory,
relative to hdf5 directory, you will be asked to locate the
sub-project files, when you open the project all.dsw.
If you want to rename all (the entire project), you will need to
modify two files all.sln and all.vcproj as text (contrary to the
explicit warnings in the files).
You can also modify all.sln and all.vcproj as text, to allow these 2
files to be installed in another directory.
Settings... details:
If you create your own project, the necessary settings can be read
from the all.vcproj file(as text), or from the Project Settings in the
Developer Studio project settings dialog.
Project
Settings
C/C++
Category
Code Generation
Use run-time Library
These are all set to use Single-Threaded
DLL... hints:
If you want to use DLL versions of HDF5 library in your application,
you should
1) put HDF5 DLL into windows system directory
2) add HDF5 DLL export library into your project
3) Follow "Settings... details" into the last line:
change Single-Threaded into Multithreaded DLL or
Debug Multithreaded DLL
4) Follow "Settings.. details" into PreProcessor:
Project
Settings
C/C++
Category
PreProcessor
Find PreProcessor definations and Add _HDF5USEDLL_ at the
end of the PreProcessor definitions to use HDF5 C DLL.
5) (optional) repeat 4), add HDF5CPP_USEDLL at the
end of the PreProcessor definitions to use HDF5 C++ DLL.
6) (optional) Follow Project->Settings->Fortran->Category->
General->Predefined Preprocess or Symbols, and add
"HDF5F90_WINDOWS" to use HDF5 Fortran DLL.
Section V: How to disable Gzip(Zlib)/Szip compression
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Warning: When you modify the H5pubconf.h file as described below,
DO NOT just change the values of these macros from 1 to 0.
Please DO remove(or comment out) appropriate lines.
1. Disable Gzip compression
If you would like to remove Gzip compression from the HDF5
library, follow the steps below.
1.1 Open the H5pubconf.h file from the c:\MyHDFstuff\hdf5\src
directory and remove(or comment out) the following two lines:
#define H5_HAVE_ZLIB_H 1
#define H5_HAVE_FILTER_DEFLATE 1
then save the file.
1.2 Delete HDF5_EXT_ZLIB environment variable if you have
set it in preconditions.
1.3 Run-compile HDF5 library according to section II.
When you disable Gzip, you may get the following message
when building HDF5 libraries:
The following environment variables were not found
$(HDF5_EXT_ZLIB)
This message can be ignored.
2. Disable Szip compression (both encoder and decoder)
If you would like to remove Szip compression from the HDF5
library, follow the steps below.
2.1 Open the H5pubconf.h file from the c:\MyHDFstuff\hdf5\src
directory and remove(or comment out) the following three
lines:
#define H5_HAVE_SZLIB_H 1
#define H5_HAVE_FILTER_SZIP 1
#define H5_SZIP_CAN_ENCODE 1
then save the file.
2.2 Delete HDF5_EXT_SZIP environment variable if you have
set it in preconditions.
2.3 Run-compile HDF5 library according to section II.
When you disable Szip, you may get the following message
when building HDF5 libraries:
The following environment variables were not found
$(HDF5_EXT_SZIP)
This message can be ignored.
Note:
To disable Gzip and Szip at the same time, just follow 1.1~1.3
and 2.1~2.4 and run-compile HDF5 library according to section II.
3. Disable Szip encoder
If you would like to just disable Szip encoder from the HDF5
library while keeping Szip decoder enabled, follow the steps
below.
3.1 Download Szip library without encoder
Szip library is different if you want to disable Szip
encoder. Download szip_noencoder binaries from
ftp://ftp.hdfgroup.org/lib-external/szip/2.1/bin/windows.
The Szip library and header path should also be set up
accordingly (refer to precondition 6).
3.2 Open the H5pubconf.h file from the c:\MyHDFstuff\hdf5\src
directory and remove (or comment out) the following line:
#define H5_SZIP_CAN_ENCODE 1
then save the file.
3.3 Run-compile HDF5 library according to section II.
Section VI: How to build HDF5 in Visual Studio 2005
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
We just briefly introduce you how to build HDF5 in Visual Studio
2005.
1. Build HDF5 in Visual Studio 2005 is similiar to building in .NET
Section VII: Building with Intel Fortran 9.1
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notes: 1. For Intel Compiler users, Intel fortran Compiler 9.1 is currently
supported-- please see below. Intel Compiler verion
7.x and 8.x are no longer supported.
2. Intel Fortran 9.1 works only under .Net 2003 or Visual Studio 2005
environments
3. For Visual Studio 2005 users, parallel builds should be disabled. To
do so: Go to Tools > Options > Projects and Solutions > Build and Run.
Set "maximum number of parallel project builds" to 1.
Preconditions:
a. Setup Szip Library for Intel Compiler.
Intel compilers use different Szip library from other compilers.
Szip source codes or binaries for Intel compiler can be downloaded
from the following address:
ftp://ftp.hdfgroup.org/lib-external/szip/2.1/bin/windows
b. Set up path for external libraries and headers
Skip this part if you don't want to use ANY compression features
provided by HDF5. Please do read Section V.
You have to read this part even if you want to only use Zlib
or Szip. You also need to read Section V.
Invoke Microsoft Visual C++ .Net 2003 or 2005. From the main
menu, Go to Tools > Options > Intel(R) Fortran.
In the right panel, make sure you "Selected Compiler" is Intel Fortran 9.1.
Click rightmost box for "Libraries",
Add Zlib and Szip Library Path (c:\zlib123\lib, c:\szip\dll for example)
Click rightmost box for "Includes",
Add Zlib and Szip header path (c:\zlib123\include c:\szip\include, for example).
Then click "OK".
1. Build Fortran Libraries under Intel Fortran Compiler 9.1
Note: This step will build HDF5 Static and DLL C and C++
Library using .Net 2003 or Visual 2005 Compiler as well as HDF5
Static and High Level Fortran Library using Intel
Fortran 9.1 Compiler.
1.1 Extract Compaq Fortran Project Files
a. Select project "flush1_fortran" in the Solution Explorer
window. In the Project menu, select
"Extract Compaq Visual Fortran Project".
Do the same thing for the following project files, but for now, skip
the projects labelled "**SKIP**":
flush1_fortrandll
flush2_fortran
flush2_fortrandll
hdf5_fortran
hdf5_fortrandll
**SKIP** libtest_fortran
libtest_fortrandll
testhdf5_fortran
testhdf5_fortrandll
b. Select project "libtest_fortran" in the Solution
Explorer window. In the Project menu, select
"Extract Compaq Visual Fortran Project". Since Project
file "libtest_fortran" contain both C and Fortran code,
you will be asked to specify which project, either
Fortran or C/C++, will serve as the main project for
this mixed language projects. Choose
"The Intel Fortran project" as the the main project and
click "OK".
Note: In Visual Studio 2005, you may receive a message that
says "The attempt to convert the Fortran project file failed.
The project file (.vcproj) has not been converted." This message
can safely be ignored.
1.3: Fix Project Output
1) Change libtest_fortran_lib Release Output
For .Net 2003:
Choose configuration to be "Release". Right click project
libtest_fortran_lib. Click "librarian" on the left panel. Change
".\Release\libtest_fortran.lib" to ".\Release\libtest_fortranr.lib"
on the panel of Output File; then click "OK".
For Visual Studio 2005:
In Build > Configuration Manager, set the configuration to "Release"
and click OK. Then, right click on the project libtest_fortran_lib
and select "Properties". From the left pane, choose Librarian >
General. In the right pane, under Output File, change
".\Release\libtest_fortran.lib" to ".\Release\libtest_fortranr.lib"
Then click "OK".
2) Change hdf5_fortran Debug Output
For .Net 2003:
Choose configuration to be "Debug". Right click project
hdf5_fortran. Click "librarian" on the left panel. Change
"$(OutDir)/$(ProjectName).lib" to "$(OutDir)/hdf5_fortrand.lib"
on the panel of Output File; then click "OK".
For Visual Studio 2005:
In Build > Configuration Manager, set the configuration to "Debug"
and click OK. Then, right click on the project hdf5_fortran
and select "Properties". From the left pane, choose Librarian >
General. In the right pane, under Output File, change
"$(OutDir)/$(ProjectName).lib" to "$(OutDir)/hdf5_fortrand.lib"
Then click "OK".
1.4: Change project dependencies
To check the project dependencies,
right click the selected project, you should see "Project Dependencies"
on the menu, click "Project Dependencies", You should see a "Project
Dependencies" panel, with the selected project and the projects it
depends on checked under "Depends on" list.
The project "libtest_fortran_lib" will need to be added as a
dependnecy to the following projects:
flush1_fortran
flush2_fortran
libtest_fortran
testhdf5_fortran
1.5 Building HDF5 C/C++/Fortran Libraries and Tools
Select "Build", then Select "Configuration Manager".
Select "Debug" or "Release"
Select "Ok". Select "Build" -> "Build" or "Rebuild All" to
build Debug or Release version of HDF5 C, C++, fortran
Library using Intel fortran 9.1 Compiler with .Net 2003 or .Net 2005.
2. Test HDF5 Static and High Level Fortran Library
We provide 2 options for users to test HDF5 libraries and tools.
Option 1: Automatic testings
HDF5 comes with various test suites, all of which can be tested
with hdf5check.bat batch file in c:\MyHDFstuff\hdf5 directory.
hdf5check batch file can used to test HDF libraries with Fortran with
the following options:
hdf5check enablefortran test HDF5 C/FORTRAN libraries and
tools
hdf5check enableall test HDF5 C/C++/FORTRAN libraries
and tools
To use this option, HDF5 C++ and
Fortran libraries must have been
built.
Invoke a command prompt window and run hdf5check with appropriate
option.
Test results are saved in two files:
c:\MyHDFstuff\hdf5\check_results.txt
c:\MyHDFstuff\hdf5\tests_results.txt.
In general, you only need to check tests_results.txt. If all the
tests passed, then you do not have to check check_results.txt.
If some tests failed, check check_results.txt can help you
figure out what was wrong.
Option 2: Step-by-step HDF5 libraries and tools testings
Note: This section provides step-by-step instructions for testing the
Fortran librariy and tools only. To test the rest of the HDF5 library
and tools, please see Section II, Step 2.
a. Test HDF5 Static Fortran Library
Go to directory c:\myHDFstuff\hdf5\fortran\test, Run batch file
testhdf5_fortran.bat with the following two options to test
fortran static library
testhdf5_fortran release >> "Your output file name"
testhdf5_fortran debug >> "Your output file name"
Check your output files, there should be no "failures" at all.
b. Test HDF5 High Level Fortran Library
Go to directory c:\myHDFstuff\hdf5\hl\fortran\test, Run batch file
testhdf5_fortran.bat with the following two options to test
fortran static library
test_hdf5_hl_fortran release >> "Your output file name"
test_hdf5_hl_fortran debug >> "Your output file name"
Check your output files, there should be no "failures" at all.
3. (Optional) Build HDF5 Fortan and HL Fortran Examples
Note: This section only covers building Fortran and HL Fortran examples.
For other examples, please see Section II, step 4.
To build and test HDF5 Fortran example:
1. Invoke Intel Fortran Compiler 9.1 or above under Microsoft
Visual Studio development environment, go to "File" and select
the "Open Workspace" option.
Then open the workspace
c:\MyHDFstuff\hdf5\fortran\examples\allf90examples\allf90examples.dsw.
2. Select "Build", then Select "Set Active Configuration".
In "Project configurations", select the active configuration
"allf90examples -- Win32 Debug" to build debug versions of the
Fortran examples.
and
"allf90examples -- Win32 Release" to build release versions the
Fortran examples.
When the debug build or release build is done, there should
be the following subdirectories in
c:\MyHDFstuff\hdf5\fortran\examples\
attreexampletest
attreexampletestdll
compoundtest
compoundtestdll
dsetexampletest
dsetexampletestdll
fileexampletest
fileexampletestdll
groupexampletest
groupexampletestdll
grpdsetexampletest
grpdsetexampletestdll
grpittest
grpittestdll
grpsexampletest
grpsexampletestdll
hyperslabtest
hyperslabtestdll
mountexampletest
mountexampletest
refobjexampletest
refobjexampletestdll
refregexampletest
refregexampletestdll
rwdsetexampletest
rwdsetexampletestdll
selecteletest
selecteletestdll
3. Invoke a command prompt window and run the batch file
Installf90Examples.bat which resides in the top level
directory (c:\MyHDFstuff\hdf5). This file creates 4 new
directories, f90examplesREL, f90examplesRELDLL, f90examplesDBG,
and f90examplesDBGDLL, in the c:\MyHDFstuff\fortran\examples
directory and places all the executables in it. Both the
release and debug versions of the examples should be built
before this step is done.
Section VIII: Building and testing HDF5 snapshot release
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Note:
This section is only for users who would like to build and test
HDF5 snapshot release.
If you want to test and build HDF5 snapshot release, you need
extra steps to automatically generate H5Tinit.c before going to
section II step 1(2).
Previous step: section II, step 1(1).
Extra steps:
1) After extracting all.zip to the correct path, open the
c:\myHDFstuff\hdf5\misc\typegen\typegen.dsw.
2) Build the project file.
3) Invoke command prompt and go to c:\myHDFstuff\hdf5\src.
4) type H5Tinit.exe >H5Tinit.c
5) Go back to section II, continue with step 1(2).
Section IX: How to build Multi-threaded version of HDF5 library
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Notes: Preconditions and Section I also apply to this section. Users who
want to build Multi-threaded version of HDF5 library, please read
those two sections carefully before go to the following part.
1. Unpack all.zip
Unpack windows\all.zip in c:\MyHDFstuff\hdf5\ directory. If
prompted to overwrite files, select "Yes to All".
2. Invoke Microsoft Visual C++ compiler
Invoke Microsoft Visual C++. From the main menu, go to "File"
and select the "Open Solution" option. Then open the
c:\MyHDFstuff\hdf5\proj\all\all.sln file.
You should find windows project files listed as "all,
big etc." in the Solution Explorer.
3. Please refer to Section II, Step 1(3) to set the dependencies of
project "all.dsp".
4. Change Project settings
Choose "Project"->"Settings",
In the left pane of the window "Project Settings", from the drop
down box to the right of "Setting For:", choose "Win32 Release";
Highlight all of the static project file in the left lower pane
by pressing "ctrl" key while clicking the project file name.
In the right pane of the "Project Settings" window, choose "C/C++".
From the drop down box to the right of "Category", choose
"Code Generation", under "Use run-time library:",
"Single-Threaded" should appear. If it is blank inside this
box, check if you highlight some dll project files. Change
"Single-Threaded" to "Multithreaded".
In the left pane of the window "Project Settings", from the drop
down box to the right of "Setting For:", choose "Win32 Debug";
Highlight all of the static project file in the left lower pane
by pressing "ctrl" key while clicking the project file name.
In the right pane of the "Project Settings" window, choose "C/C++".
From the drop down box to the right of "Category", choose
"Code Generation", under "Use run-time library:",
"Debug Single-Threaded" should appear. If it is blank inside this
box, check if you highlight some dll project files. Change
"Debug Single-Threaded" to "Debug Multithreaded"
5. Go back to Section II, Step 1 (4), continue to build and test HDF5 library.
Section IX: How to build HDF5 on windows Vista
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Building on Windows Vista is very similar to building on Windows XP, with
some minor changes. Therefore, follow the build instructions above, with the
following considerations:
1. Only Visual Studio 2005 is currently supported on Windows Vista. This
is because Microsoft has ended their support for 6.0 and .NET.
2. Building Fortran libraries has not been tested, and is therefore also
unsupported. You may attempt to build Fortran libraries following the
instructions above, but they should be considered experimental and used
for testing only.
3. Elevated security permissions are required to test the HDF5 libraries.
This is because DLLs are installed in the system directory. To enable
elevated security:
1. In the Start menu, search for "Command Prompt". Right click on
the "Command Prompt" program, and select "Run as administrator."
2. A security dialog will pop up. Make sure you select "Continue."
3. Test HDF5 libraries and tools as usual using "hdf5check.bat"
script.
*******************************************************************
Please send email to help@hdfgroup.org for further assistance.
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