1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
|
HDF5 version 1.6.5-pre3 currently under development
================================================================================
INTRODUCTION
============
This document describes the differences between HDF5-1.6.4 and
HDF5-1.6.4-post*, and contains information on the platforms tested and
known problems in HDF5-1.6.4. For more details check the HISTORY.txt
file in the HDF5 source.
The HDF5 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:
/HDF/HDF5/docs/
For more information look at the HDF5 home page at:
http://hdf.ncsa.uiuc.edu/HDF5/
If you have any questions or comments, please send them to:
hdfhelp@ncsa.uiuc.edu
CONTENTS
========
- New Features
- Support for new platforms and languages
- Bug Fixes since HDF5-1.6.4
- Documentation
- Platforms Tested
- Supported Configuration Features Summary
- Known Problems
New Features
============
Configuration:
-------------------------
- Configure now recognizes the TR variable as the location of the
tr utility. JML 2005/10/20
Source code distribution:
-------------------------
- Added g95 as a testing "platform" informally. AKC - 2005/10/04.
- Added MD5 checksumming to snapshot releases. Releases will now
produce a .md5 file as well as a .tar archive. md5sum can be
used to verify the arvhice with the .md5 checksum. -JL 2005/09/06
Library:
--------
- Added HSYS_ERROR which retrieves the system error message and pushes
it to the error stack. This gives more information of the failed
system call. AKC - 2005/08/04
- Added H5F_OBJ_LOCAL flag to H5Fget_obj_count() & H5Fget_obj_ids(), to
allow querying for objects in file that were opened with a particular
file ID, instead of all objects opened in file with any file ID.
QAK - 2005/06/01
Parallel Library:
-----------------
- Added mpich2 as a testing "platform" informally. AKC - 2005/10/04.
- HDF5 supports collective MPI-IO for irregular selection with HDF5
dataset. Irregular selection is when users use API H5Sselect_hyperslab
more than once for the same dataset.
Currently, not all MPI-IO packages support complicated MPI derived
datatype used in the implementation of irregular
selection INSIDE HDF5.
1) DEC 5.x is not supporting complicated derived datatype.
2) For AIX 5.1,
if your poe version number is 3.2.0.20 or lower,
please edit powerpc-ibm-aix5.x under hdf5/config,
Find the line with
<< hdf5_mpi_complex_derived_datatype_works>>
and UNCOMMENT this line before the configure.
check poe version with the following command:
lpp -l all | grep ppe.poe
3) For Linux cluster,
if mpich version is 1.2.5 or lower, collective irregular selection
IO is not supported, internally independent IO is used.
4) For IRIX 6.5,
if C compiler version is 7.3 or lower, collective irregular selection
IO is not supported, internally independent IO is used.
5) For platforms which internally used mpich, if the
mpich version is 1.2.5 or lower, please find the
corresponding config file and add
hdf5_mpi_complex_derived_datatype_works='no' at the
end of the configuration file. For example, at NCSA
SGI Altix, the internal mpich library is 1.2.5. So
hdf5_mpi_complex_derived_datatype_works='no' should be
added at the end of the config file ia64-linux-gnu.
KY - 2005/09/12
Tools:
------
- Removed obsolete pdb2hdf tool. JML - 2005/10/28
- Sped up h5dump on files with large numbers of objects.
QAK - 2005/08/25
F90 API:
--------
- Added missing h5tget_member_class_f function
EIP 2005/04/06
C++ API:
--------
- Added missing member functions
H5::CompType::getMemberArrayType
H5::CompType::getMemberVarLenType
H5::AbstractDs::getArrayType
H5::AbstractDs::getVarLenType
H5::CommonFG::openArrayType
H5::CommonFG::openVarLenType
H5::PropList::copyProp -- this will replace the current
H5::PropList::copyProp in later releases due
to incorrect prototype.
BMR - 2005/07/27
Support for new platforms, languages and compilers.
=======================================
- Added support for HPUX 11.23 (IA64); only C and C++ are supported
with the +DD64 flag
EIP 2005/10/05
Configuration
-------------
- Added support for Cray X1. JML 2005/10/03
Bug Fixes since HDF5-1.6.4 release
==================================
Library
-------
- Fixed collective IO in chunking-storage. The dataspace for each
chunk is different with the dataspace for the whole file or buffer.
It may call the wrong routine when the shape of the dataspace in
file and in chunk is different. This bug was fixed to make sure
the correct routine is called. KY - 2005/10/19
- Fixed core dump when closing root groups opened through two different
file handles that operate on the same actual file. QAK - 2005/10/02
- The ./dsets tests used to fail in the TFLOPS machine if the
test program, dsets.c, was compiled with the -O option.
The hdf5 library still worked correctly with the -O option. Only
the ./dsets failed. It is fixed. AKC - 2005/09/14
- Corrected errors when performing various operations on a group opened
by dereferencing an object reference. QAK - 2005/07/30
- Fixed a bug with named datatypes where a copy of a named datatype
used to create a dataset would accidentally use the original
named datatype for the dataset's datatype. QAK - 2005/07/23
- Made H5Fget_name() be consistent and always return name of actual
file the ID is in. (Instead of the name of the top file in a
file mounting hierarchy). QAK - 2005/07/19
- Reworked internal file mounting semantics to hopefully eliminate
mounting problems. We now require that files that are mounting
together all have the same "file close degree". QAK - 2005/07/19
- More bug fixes on holding open files that are mounted and have
IDs open. QAK - 2005/07/14
- More bug fixes on holding open files that are mounted and have
IDs open. QAK - 2005/07/14
- Dataset sieve buffer cache was inadvertantly disabled - re-enable
it. QAK - 2005/07/08
- Don't unmount child files until the parent file actually closes.
(Previously, if an object is holding open a file, the child files
would get unmounted too early). QAK - 2005/07/05
- Fixed bug where unmounted files could cause the library to go into
an infinite loop when shutting down. QAK - 2005/06/30
- Fixed bug with hyperslab selections that use selection offsets and
operate on chunked datasets going into infinite loop or dumping
core. QAK - 2005/06/17
- Corrected memory leak and possible corruption when opening a group.
QAK - 2005/06/17
- Added check for opaque datatype tags being too long (check against
H5T_OPAQUE_TAG_MAX, currently set to 256). QAK - 2005/06/14
- Fixed various errors in maintaining names for open objects in the
face of unusual mount & unmount operations. QAK - 2005/06/08
- "SEMI" and "STRONG" file close degree settings now apply only to the
particular file ID being closed, instead of operating on all open
file IDs for a given file. QAK - 2005/06/01
- Fixed error in opening object in group that was opened in mounted
file which has been unmounted. QAK - 2005/03/17
Configuration
-------------
- Configure can recognize -lmpich as a form of MPI library. -AKC-
2005/9/28.
- Changed default C++ compiler for the IA64 platform from icc to
icpc which is the preferred compiler for Intel Compiler version
8. AKC - 2005/09/02
Performance
-------------
- Optimized I/O for enumerated datatypes that are a superset of source
enumerated datatype. QAK - 2005/03/19
Tools
-----
Documentation
-------------
F90 API
-------
- h5pget_driver_f was returning information that could not be
interpreted by fortran application program; fixed. EIP - 2005/04/10
C++ API
-------
- Several member functions' prototype changed due to the
"int -> unsigned" change in the main library. They are:
H5::CompType::getMemberDataType(unsigned member_num)
H5::CompType::getMemberCompType(unsigned member_num)
H5::CompType::getMemberEnumType(unsigned member_num)
H5::CompType::getMemberIntType(unsigned member_num)
H5::CompType::getMemberFloatType(unsigned member_num)
H5::CompType::getMemberStrType(unsigned member_num)
BMR - 2005/07/27
Documentation
=============
Platforms Tested
================
AIX 5.1 (32 and 64-bit) xlc 6.0.0.6
xlf 8.1.1.3
xlC 6.0.0.6
mpcc_r 6.0.0.6
mpxlf_r 8.1.1.3
xlc 5.0.2.5
xlf 7.1.1.2
xlC 5.0.2.5
mpcc_r 5.0.2.5
mpxlf_r 7.1.1.2
AIX 5.2 (32/64 bit) xlc 6.0.0.8
xlC 6.0.0.9
xlf 8.1.1.7
mpcc_r 6.0.0.8
mpxlf_r 8.1.1.7
AIX 5.2 (32/64 bit, LLNL frost) xlc 6.0.0.8
xlC 6.0.0.8
xlf 8.1.1.7
mpcc_r 6.0.0.8
mpxlf_r 8.1.1.7
AIX 5.3 (32/64 bit) xlc 7.0.0.0
xlC 7.0.
xlf 9.1.0.3
Cray X1 water 3.0.35 Cray Standard C Version 5.4.0.7.4
Cray Fortran 5.4.0.7.3
Cray C++ 5.4.0.7.4
FreeBSD 4.11 gcc 2.95.4
g++ 2.95.4
gcc 3.2.3, 3.3.6, 3.4.4, 4.0.0
HP-UX B.11.00 HP C HP92453-01 A.11.01.20
HP F90 v2.4
HP ANSI C++ B3910B A.03.13
HP-UX B.11.23 HP aC++/ANSI C B3910B A.06.00
HP F90 v2.9
HP aC++/ANSI C B3910B A.06.00
IRIX64 6.5 (tesla -64) MIPSpro cc 7.4.2m
F90 MIPSpro 7.4.2m
C++ MIPSpro cc 7.4.2m
IRIX64 6.5 (64 & n32) MIPSpro cc 7.3.1.3m
F90 MIPSpro 7.3.1.3m (64 only)
C++ MIPSpro cc 7.3.1.3m
mpt 1.6
Linux 2.4.20-28.7 gcc 2.96
(eirene, verbena) gcc 3.3.2
PGI compilers (pgcc, pgf90, pgCC)
version 5.2-1
Absoft Fortran compiler v9.0
Intel(R) C++ 32-bit Version 8.1
Intel(R) Fortran 32-bit Version 8.1
MPIch 1.2.6
Linux 2.4.21-268-smp x86_64 gcc 3.3.1 (SuSE Linux, AMD)
(mir) PGI 5.2-1 C and F90 (with k3-32)
Intel(R) C++ 32-bit Version 8.1
Intel(R) Fortran 32-bit Version 8.1
Linux 2.4.21-sgi306rp21 Altix
SMP ia64 Intel(R) C++ Version 8.1
(cobalt) Intel(R) Fortran Itanium(R) Version 8.1
SGI MPI
OSF1 V5.1 (QSC) Compaq C V6.5-011
HP Fortran V5.5A-3548
Compaq C++ V6.5-036
MPIX200_64_r13.4
OSF1 V5.1 (PSC) Compaq C V6.5-303
HP Fortran V5.5A-3548
Compaq C++ V6.5-040
SunOS 5.8 32,46 Sun WorkShop 6 update 2 C 5.3
(Solaris 2.8) Sun WorkShop 6 update 2 Fortran 90
Sun WorkShop 6 update 2 C++ 5.3
SunOS 5.9 32,64 Sun C 5.6 2004/07/15
(Solaris 2.9) Sun Fortran 95 8.0 2004/07/15
Sun C++ 5.6 2004/07/15
Solaris 5.10 Sun WorkShop 6 update 2 C 5.3
Sun WorkShop 6 update 2 Fortran 95 6.2
Sun WorkShop 6 update 2 C++ 5.3
Patch 111685-13
TFLOPS r1.0.4 v4.5.2 i386 pgcc Rel 3.1-4i with mpich-1.2.4 with
local modifications
Xeon Linux 2.4.21-32.0.1.ELsmp-perfctr-lustre
(tungsten) Intel(R) C++ Version 9.0
Intel(R) Fortran Compiler Version 9.0
IA-64 Linux 2.4.21.SuSE_292.til1 ia64
(NCSA tg-login) Intel(R) C++ Version 8.0
Intel(R) Fortran Compiler Version 8.0
mpich-gm-1.2.5..10-intel-r2
Windows XP MSVC++.NET
MSVC++ 6.0
Intel 8.1 C++
MAC OS X Darwin 7.5
gcc and g++ Apple Computer, Inc. GCC
version 1175, based on gcc version 3.3.2
IBM XL Fortran version 8.1
Absoft Fortran compiler v8.2
Supported Configuration Features Summary
========================================
Key: y = tested and supported
n = not supported or not tested in this release
x = not working in this release
dna = does not apply
( ) = footnote appears below second table
Platform C F90 F90 C++ zlib SZIP
parallel parallel
Solaris2.8 64-bit y y y(1) y y y
Solaris2.8 32-bit y y y(1) y y y
Solaris2.9 64-bit y(1) y y(1) y y y
Solaris2.9 32-bit y(1) y y(1) y y y
Solaris2.10 64-bit y(1) y n y y y
Solaris2.10 32-bit y(1) y n y y y
IRIX64_6.5 64-bit y(2) y y y y y
IRIX64_6.5 32-bit y(2) n n n y y
HPUX11.00 y(1) y y y y y
HPUX11.23-32bit n y n y y y
HPUX11.23-64bit n n n y y y
OSF1 v5.1 y y y y y y
X1 y y y y y n
TFLOPS y(1) n n n y n
AIX-5.1, 5.2 & 5.3 32-bit y y y y y y
AIX-5.1, 5.2 & 5.3 64-bit y y y y y y
WinXP Visual Studio 6.0 n n(9) n y y y
WinXP .Net n n n y(8) y y
Mac OS X 10.3 n y(10) n y y y
FreeBSD 4.11 n n n y y y
RedHat 7.3 W (3) y(1) y(11) n y y y
RedHat 7.3 W Intel (3) n y n y y y
RedHat 7.3 W PGI (3) n y n y y y
SuSe x86_64 gcc (3,13) n y(12) n y y y
SuSe x86_64 icc (3,13) n y(14) n y y y
Linux 2.4 Xeon C Lustre Intel (3,6) n y n y y y
Linux 2.4 SuSE ia64 C Intel (3,7) y y y y y y
Linux 2.4 SGI Altix ia64 Intel (3) y y y y y y
Platform Shared static- Thread- STREAM-
libraries(4) exec safe VFD
Solaris2.8 64-bit y x y y
Solaris2.8 32-bit y x y y
Solaris2.9 64-bit y x y y
Solaris2.9 32-bit y x y y
Solaris2.10 64-bit y x y y
Solaris2.10 32-bit y x y y
IRIX64_6.5 64-bit y y y y
IRIX64_6.5 32-bit y y y y
HPUX11.00 y x n y
HPUX11.23 y y n y
OSF1 v5.1 y y n y
X1 n y n y
TFLOPS n y n n
AIX-5.1, 5.2 & 5.3 32-bit n y n y
AIX-5.1, 5.2 & 5.3 64-bit n y n y
WinXP Visual Studio 6.0 y y n n
WinXP .Net y y n n
Mac OS X 10.3 y y n y
FreeBSD 4.11 y y y y
RedHat 7.3 W (3) y y y y
RedHat 7.3 W Intel (3) n y n y
RedHat 7.3 W PGI (3) n y n y
SuSe x86_64 gcc (3,13) n y n y
SuSe x86_64 icc (3,13) y y(15) n y
Linux 2.4 Xeon C Lustre Intel (3,6) y y n y
Linux 2.4 SuSE ia64 C Intel (3,7) y y n n
Linux 2.4 SGI Altix ia64 Intel (3) y y n y
Compiler versions for each platform are listed in the "Platforms Tested"
table found elsewhere in this file (RELEASE.txt). Unless otherwise noted,
compilers used are the system compilers.
Footnotes: (1) Using mpich 1.2.6
(2) Using mpt and mpich 1.2.6.
(3) Linux 2.4 with GNU, Intel, and PGI compilers, as indicated.
W or C indicates workstation or cluster, respectively.
(4) Shared libraries are provided only for the C library,
except on Windows where they are provided for C and C++.
(5) Using mpt.
(6) Linux 2.4.21-32.0.1. Xeon cluster with ELsmp-perfctr-lustre
and Intel compilers
(7) Linux 2.4.21, SuSE_292.til1. Ia64 cluster with Intel compilers
(8) Intel 8.1
(9) We found one test of this release failed with compaq visual
fortran 6.6c.
We won't provide binary fortran release. Users should build
the library by themselves and use with their own risks. We
recommend users to use HDF5 1.7 instead.
HDF5 1.7 or use compaq visual fortran 6.0.
(10) IBM XLF and Absoft
(11) PGI, Absoft. No shared libraries with Absoft;
use '--disable-shared'.
(12) PGI and Intel compilers for both C and Fortran
(13) AMD Opteron x86_64
(14) ifort
(15) Yes with C and Fortran, but not with C++
FMB/EIP - 2005/03/15
Known Problems
==============
* Fortran testing and compiling failures on windows XP
1. Compaq visual fortran 6.6c with VS 6.0
The Fortran tests failed for both release, release dll, debug and debug
dll. The failure is a random one. We won't provide fortran libraries. The
same test passed with 1.7.51 snapshot. You may find the 1.7.51 snapshot
under ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/snapshots/
2. Intel fortran 8.1 under .Net environment
The fortran library cannot even be compiled. Some users have pointed this
to intel forum.
* When testing parallel HDF5 with the C compiler version MIPSpro 7.4.3 at IRIX
6.5, set enviroment variable MPI_TYPE_MAX to be a bigger number, for example 120000
in order to pass the complicated collective IO tests inside parallel HDF5
library. This is not a problem inside parallel HDF5 library. You can always
set a bigger number in your system.
KY - 2005/10/6
* Contiguous or chunked dataset created by a sequential version may
not be modified with a parallel version of the library.
Use the H5Pset_alloc_time function with H5D_ALLOC_TIME_EARLY to set up the
dataset creation property list to avoid the problem.
EIP - 2005/09/09
* The dataset created or rewritten with the v1.6.3 library or after can't
be read with the v1.6.2 library or before when Fletcher32 EDC(filter) is
enabled. There was a bug in the calculating code of the Fletcher32
checksum in the library before v1.6.3. The checksum value wasn't consistent
between big-endian and little-endian systems. This bug was fixed in
Release 1.6.3. However, after fixing the bug, the checksum value is no
longer the same as before on little-endian system. The library release
after 1.6.4 can still read the dataset created or rewritten with the library
of v1.6.2 or before. SLU - 2005/7/8
* For the version 6(6.02 and 6.04) of Portland Group compiler on AMD Opteron
processor, there's a bug in the compiler for optimization(-O2). The library
failed in several tests but all related to multi driver. The problem has
been reported to the vendor.
* test/big fails sometimes with the message "Possible overlap with another
region." The test selects regions randomly, and this error occurs when
two regions overlap each other; it is an bug in the test and not in
HDF5. Since the error is triggered by a random situation, it will
usually disappear if the test is re-run.
* Cray SV1 fails to correctly convert between floating-point and "long double"
for software conversion. Problem is being investigated. SLU - 2005/03/04
* Newer SGI MIPSpro compilers (version 7.4.x) support C99 features but it
has a "guard" statement in stdint.h that will #error and skip the rest
of the header file if C99 option is not used explicitly. Hardset
$CC to c99 will resolve the problem. AKC - 2004/12/13
* On IBM AIX systems, parallel HDF5 mode will fail some tests with error
messages like "INFO: 0031-XXX ...". This is from the command poe.
Set the environment variable MP_INFOLEVEL to 0 to minimize the messages
and run the tests again.
The tests may fail with messages like "The socket name is already
in use". HDF5 does not use sockets (except for stream-VFD). This is
due to problems of the poe command trying to set up the debug socket.
Check if there are many old /tmp/s.pedb.* staying around. These are
sockets used by the poe command and left behind due to failed commands.
Ask your system administrator to clean them out. Lastly, request IBM
to provide a mean to run poe without the debug socket.
* There are two h5dump xml tests(h5dump --xml thlink.h5 and
h5dump --xml tmany.h5) failed on windows xp with .NET for debug and
debug dll. Release and Release dll work fine.
* The h5dump tests may fail to match the expected output on some platforms
(e.g. parallel jobs, Windows) where the error messages directed to
"stderr" do not appear in the "right order" with output from stdout.
This is not an error.
* The stream-vfd test uses ip port 10007 for testing. If another
application is already using that port address, the test will hang
indefinitely and has to be terminated by the kill command. To try the
test again, change the port address in test/stream_test.c to one not
being used in the host.
* The --enable-static-exec configure flag fails to compile for Solaris
platforms. This is due to the fact that not all of the system
libraries on Solaris are available in a static format.
The --enable-static-exec configure flag also fails to correctly compile
on IBM SP2 platform for the serial mode. The parallel mode works fine
with this option.
The --enable-static-exec configure flag also fails to correctly compile
on the HPUX 11.00.
It is suggested that you don't use this option on these platforms
during configuration.
* The Stream VFD was not tested yet under Windows. It is not supported
in the TFLOPS machine.
* Certain platforms give false negatives when testing h5ls:
- Cray T90IEEE give errors during testing when displaying
some floating-point values. These are benign differences due to
the different precision in the values displayed.
h5ls appears to be dumping floating-point numbers correctly.
* Before building HDF5 F90 Library from source on Crays
replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src
subdirectory in the top level directory with the Cray-specific files
from the site:
ftp://ftp.ncsa.uiuc.edu/HDF/HDF5/current/src/patches/
* On some platforms that use Intel and Absoft compilers to build HDF5 fortran
library, compilation may fail for fortranlib_test.f90, fflush1.f90 and
fflush2.f90 complaining about exit subroutine. Comment out the line
IF (total_error .ne. 0) CALL exit (total_error)
* Use --disable-shared configure flag if building with Absoft Fortran
compiler
* Information about building with PGI and Intel compilers is available in
INSTALL file sections 5.7 and 5.8
* In LANL QSC, the new cc compiler has problems converting small values of
long long (absolute values less than 1**-308) to double. This triggers
the test/dtypes to report failure in the
Testing random sw long double -> double conversions
If -ieee is used, the converted doubles spread over the range 0.0 to 1**-308.
If -ieee is not used, the converted double values are mostly 0.0 but
occasionally as 1**-308. This has been reported to the system staff.
All other tests have passed.
* The C++ library's tests fails when compiling with PGI C++ compiler. The
workaround until the problem is correctly handled is to use the
flag "--instantiate=local" prior to the configure and build steps, as:
setenv CXX "pgCC --instantiate=local" for pgCC 5.02 and higher
setenv CXX "pgCC -tlocal" for others
* Fortran release DLL randomly failed with compaq visual fortran 6.6c on
windows.
* Fortran DLL built with Intel 8.1 in .NET environment crushed the compiler,
To build Fortran Static library with Intel 8.1 in .NET environment
needs manually setting the project file,
please contact to hdfhelp@ncsa.uiuc.edu if you need to build
fortran static library with Intel 8.1 with .NET environment.
* On at least one system, (SDSC DataStar), the scheduler (in this case
LoadLeveler) sends job status updates to standard error when you run
any executable that was compiled with the parallel compilers.
This causes problems when running "make check" on parallel builds, as
many of the tool tests function by saving the output from test runs,
and comparing it to an exemplar.
The best solution is to reconfigure the target system so it no longer
inserts the extra text. However, this may not be practical.
In such cases, one solution is to "setenv HDF5_Make_Ignore yes" prior to
the configure and build. This will cause "make check" to continue after
detecting errors in the tool tests. However, in the case of SDSC DataStar,
it also leaves you with some 150 "failed" tests to examine by hand.
A second solution is to write a script to run serial tests and filter
out the text added by the scheduler. A sample script used on SDSC
DataStar is given below, but you will probably have to customize it
for your installation.
Observe that the basic idea is to insert the script as the first item
on the command line which executes the test. The script then
executes the test and filters out the offending text before passing
it on.
#!/bin/csh
set STDOUT_FILE=~/bin/serial_filter.stdout
set STDERR_FILE=~/bin/serial_filter.stderr
rm -f $STDOUT_FILE $STDERR_FILE
($* > $STDOUT_FILE) >& $STDERR_FILE
set RETURN_VALUE=$status
cat $STDOUT_FILE
tail +3 $STDERR_FILE
exit $RETURN_VALUE
You get the HDF make files and test scripts to execute your filter script
by setting the environment variable "RUNSERIAL" to the full path of the
script prior to running configure for parallel builds. Remember to
"unsetenv RUNSERIAL" before running configure for a serial build.
Note that the RUNSERIAL environment variable exists so that we can
can prefix serial runs as necessary on the target system. On DataStar,
no prefix is necessary. However on an MPICH system, the prefix might
have to be set to something like "/usr/local/mpi/bin/mpirun -np 1" to
get the serial tests to run at all.
In such cases, you will have to include the regular prefix in your
filter script.
|
