summaryrefslogtreecommitdiffstats
path: root/release_docs/RELEASE.txt
blob: 0ceae3981f75fcd8e7239898b6d736c2c7a77940 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
HDF5 version 1.7.6 currently under development
================================================================================


INTRODUCTION

This document describes the differences between HDF5-1.6.* and
HDF5-1.7.*, and contains information on the platforms tested and
known problems in HDF5-1.7.*. For more details check the HISTORY.txt
file in the HDF5 source.

The HDF5 documentation can be found on the NCSA ftp server
(ftp.ncsa.uiuc.edu) in the directory:

     /HDF/HDF5/docs/

For more information look at the HDF5 home page at:
   
    http://hdf.ncsa.uiuc.edu/HDF5/

If you have any questions or comments, please send them to:

    hdfhelp@ncsa.uiuc.edu

CONTENTS

- New Features
- Support for new platforms and languages
- Bug Fixes since HDF5-1.6.0
- Platforms Tested
- Known Problems


New Features
============

    Configuration:
    --------------
        - Prefix default is changed from /usr/local to `pwd`/hdf5.
            AKC - 2003/07/09

    Library:
    --------
        - Added new H5Fget_freespace() routine to query the free space in a
            given file.  QAK 2003/10/06
        - Added backward compatability with v1.6 for new Error API. SLU - 
            2003/09/24
        - Changed 'objno' field in H5G_stat_t structure from 'unsigned long[2]'
            to 'haddr_t'.  QAK - 2003/08/08
        - Changed 'fileno' field in H5G_stat_t structure from 'unsigned long[2]'
            to 'unsigned long'.  QAK - 2003/08/08
        - Changed 'hobj_ref_t' type from structure with array field to 'haddr_t'.
            QAK - 2003/08/08
        - Object references (hobj_ref_t) can now be compared with the 'objno'
            field in the H5G_stat_t struct for testing if two objects are the
            same within a file.  QAK - 2003/08/08
        - Switched over to new error API. SLU - 2003/07/25

    Parallel Library:
    -----------------

    Tools:
    ------
        - Changed output of "OID"s from h5dump from "<number>-<number>" to
            "<number".  This affects both the "regular" and XML output.
            QAK - 2003/08/08
        - Changed output of file IDs and "OID"s from h5ls from
            "<number>:<number>:<number>:<number>" to "<number>:<number>"
            QAK - 2003/08/08


Support for new platforms, languages and compilers.
=======================================


Bug Fixes since HDF5-1.6.0 release
==================================

    Library
    -------
        - Changed implementation of internal ID searching algorithm to avoid
            O(n) behavior for many common cases.  QAK 2003/10/06
        - Allow partial parallel writing to compact datasets.  QAK - 2003/10/06
        - Correctly create reference to shared datatype in attribute, instead
            of making a copy of the shared datatype in the attribute.
            QAK - 2003/10/01
        - Revert changes which caused files >2GB to fail when created with
            MPI-I/O file driver on certain platforms.  QAK - 2003/09/16
        - Allow compound datatypes to grow in size.  SLU - 2003/09/10
        - Detect if a type is already packed before attempting to pack it
            again or check if it is locked.  SLU - 2003/09/10
        - Corrected bug when opening a file twice with read-only permission
            for one open and then closing the read-only access file ID would
            generate an error.  QAK - 2003/09/10
        - Corrected bug in repeated calls to H5Pget_access_plist() which would
            incorrectly manage reference counts of internal information and
            eventually blow up.  QAK - 2003/09/02
        - Return rank of the array datatype on successful call to
            H5Tget_array_dims().  QAK - 2003/08/30
        - Corrected bug in H5Tdetect_class which was not correctly detecting
            datatype classes of fields in nested compound datatypes in some
            circumstances.  QAK - 2003/08/30
        - Corrected bug in sieve buffer code which could cause loss of data
            when a small dataset was created and deleted in quick succession.
            QAK - 2003/08/27
        - Corrected bug in H5Gget_objname_by_idx which was not allowing NULL
            for the name when just querying for the object name's length.
            QAK - 2003/08/25
        - Corrected bug in variable-length string handling which could
            generate a core dump on writing variable-length strings as part
            of a compound datatype on certain architectures.  QAK - 2003/08/25
        - Corrected bug in H5Tget_native_type which would incorrectly compute
            the size of certain compound datatypes and also incorrectly
            compute the offset of the last field for those compound datatypes.
            QAK - 2003/08/25
        - Corrected bug in H5Tget_native_type which would drop string datatype
            metadata (padding, etc.)  QAK - 2003/08/25
        - Corrected bugs in H5Gget_num_objs, H5Gget_objname_by_idx and
            H5Gget_objtype_by_idx to allow them to accept location IDs, not just
            group IDs.  QAK - 2003/08/21
        - Corrected bug when using scalar dataspace for memory selection and
            operating on chunked dataset.  QAK - 2003/08/18
        - Corrected bugs with multiple '/' characters in names for H5Glink
            and H5Gunlink.  QAK - 2003/08/16
        - Corrected bug with user blocks that didn't allow a user block to
            be inserted in front of a file after the file was created.
            QAK - 2003/08/13
        - Corrected errors with using point selections to access data in
            chunked datasets.  QAK - 2003/07/23
        - Corrected error with variable-length datatypes and chunked datasets
            caused H5Dwrite to fail sometimes.  QAK - 2003/07/19
        - Modified library and file format to support storing indexed storage
            (chunked dataset) B-tree's with non-default internal 'K' values.
            QAK - 2003/07/15
        - Returned H5T_BKG_TEMP support to library after it was accidentally
            removed.  QAK - 2003/07/14

    Configuration
    -------------
        - Fixed the error that cause "make install" to fail because of the
            macro definition syntax of "prefix?=..."  AKC - 2003/07/22

    Performance
    -------------

    Tools
    -----
	- Fixed a segmentation fault of h5diff when percentage option is used.
	    AKC - 2003/08/27

        - Switched away from tools using internal "fixtype" function(s) to use
            H5Tget_native_type() internally.  QAK - 2003/08/25

    Documentation 
    ------------- 


Platforms Tested
================

    AIX 5.1  (32 and 64-bit)      xlc 6.0.0.2
                                  xlf 8.1.0.3
    				  xlC 6.0.0.4
				  xlc 5.0.2.5
				  xlf 7.1.1.2
				  xlC 5.0.2.5
				  mpcc_r 5.0.2.5
				  mpxlf_r 7.1.1.2
                                  poe 3.2.0.10
    Cray T3E sn6606 2.0.6.08      Cray Standard C Version 6.6.0.2
                                  Cray Fortran Version 3.6.0.0.2
                                  mpt 2.2.0.0
    Cray SV1 sn9617 10.0.1.2      Cray Standard C Version 6.6.0.2
                                  mpt 2.2.0.0
                                  Cray Fortran Version 3.6.0.0.2
    Cray T90IEEE 10.0.1.01y       Cray Standard C Version 6.4.0.2.3
                                  Cray Fortran Version 3.4.0.3
                                  mpt 2.1.0.0
    FreeBSD 4.7                   gcc 2.95.4
                                  g++ 2.95.5
    HP-UX B.11.00                 HP C  HP92453-01 A.11.01.20 
                                  HP F90 v2.4
                                  HP ANSI C++ B3910B A.03.13
                                  MPIch 1.2.4
    IRIX 6.5                      MIPSpro cc 7.30
    IRIX64 6.5 (64 & n32)         MIPSpro cc 7.3.1.3m
                                  F90 MIPSpro 7.3.1.3m (64 only)
                                  MPIch 1.2.4
    Linux 2.4.18                  gcc 2.96, 3.2.2, 3.2.3
                                  g++ 3.2.2, 3.2.3
                                  Intel(R) C++ Version 7.1
                                  Intel(R) Fortran Compiler Version 7.1
                                  PGI compilers (pgcc, pgf90, pgCC) version 4.0-2
                                  MPIch 1.2.4
    OSF1 V5.1                     Compaq C V6.4-014
                                  Compaq C V6.3-027
				  Compaq Fortran V5.5-1877
				  Compaq C++ V6.5-014
				  MPI_64bit_R5
                                  g++ version 3.0 for C++
    SunOS 5.7                     WorkShop Compilers 5.0 98/12/15 C 5.0
     (Solaris 2.7)                WorkShop Compilers 5.0 98/12/15 C++ 5.0 
                                  WorkShop Compilers 5.0 98/10/25 
                                  FORTRAN 90 2.0 Patch 107356-04 
    SunOS 5.8/32                  Sun WorkShop 6 update 2 C 5.3
     (Solaris 2.8)                Sun WorkShop 6 update 2 Fortran 90
                                  Sun WorkShop 6 update 2 C++ 5.3
    SunOS 5.8/64                  Sun WorkShop 6 update 2 C 5.3
     (Solaris 2.8)                Sun WorkShop 6 update 2 Fortran 90
                                  Sun WorkShop 6 update 2 C++ 5.3
    TFLOPS r1.0.4 v4.3.3 i386     pgcc Rel 3.1-4i with mpich-1.2.4 with
                                          local modifications
    IA-32 Linux 2.4.9             gcc 2.96
                                  Intel(R) C++ Version 7.0
                                  Intel(R) Fortran Compiler Version 7.0
                                  
    IA-64 Linux 2.4.16 ia64       gcc version 2.96 20000731
                                  Intel(R) C++ Version 7.0
                                  Intel(R) Fortran Compiler Version 7.0
    Windows 2000 (NT5.0)          MSVC++ 6.0
                                  DEC Visual Fortran 6.0
                                  Intel C and F90 compilers version 7.1
				  Code Warrior 8.0
    Windows XP                    MSVC++.NET
    MAC OS X                      Darwin 6.5
                                  gcc and g++ Apple Computer, Inc. GCC 
                                  version 1161, based on gcc version 3.1
                                  


Supported Configuration Features Summary
========================================

    In the tables below
          y   = tested and supported
          n   = not supported or not tested in this release
          x   = not working in this release
          dna = does not apply
          ( ) = footnote appears below second table

Platform              C   C         F90      F90       C++  Shared        zlib
                          parallel           parallel       libraries (4)
Solaris2.7 64-bit     y   y (1)     y        y (1)     y    y             y
Solaris2.7 32-bit     y   y (1)     y        y (1)     y    y             y
Solaris2.8 64-bit     y   y (1)     y        y (1)     y    y             y
Solaris2.8 32-bit     y   y         y        y (1)     y    y             y
IRIX6.5               y   y (1)     n        n         n    y             y 
IRIX64_6.5 64-bit     y   y (2)     y        y         y    y             y
IRIX64_6.5 32-bit     y   y (2)     n        n         n    y             y
HPUX11.00             y   y (1)     y        y         y    y             y
OSF1 v5.1             y   y         y        y         y    y             y
T3E                   y   y (5)     y        y (5)     n    n             y
SV1                   y   y (5)     y        y (5)     n    n             y
T90 IEEE              y   y (5)     y        y (5)     n    n             y
TFLOPS                n   y (1)     n        n         n    n             y
AIX-5.1 32-bit        y   y         y        y         y    n             y
AIX-5.1 64-bit        y   y         y        y         y    n             y
WinXP           (6)   y   n         n        n         y    y             y
WinXP Intel           y   n         n        n         y    y             y
Win2000               y   n         y        n         y    y             y
Win2000 Intel         y   n         y        n         y    y             y
WinNT CW              y   n         n        n         n    n             y
Mac OS X 10.2         y   n         n        n         y    y             y
FreeBSD               y   y (1)     n        n         y    y             y
Linux 2.4 gcc   (3)   y   y (1)     y (PGI)  n         y    y             y
Linux 2.4 Intel (3)   y   n         y        n         y    n             y
Linux 2.4 PGI   (3)   y   n         y        n         y    n             y
Linux 2.4 IA32 Intel  y   n         y        n         y    n             y
Linux 2.4 IA64 Intel  y   n         y        n         y    n             y


ASCII Table 2 -- for RELEASE.txt

Platform              static- Thread- SZIP GASS STREAM-  High-level  H4/H5 
                      exec    safe              VFD      APIs        tools (7)
Solaris2.7 64-bit     x       y       y    n    y        y           n
Solaris2.7 32-bit     x       y       y    n    y        y           y
Solaris2.8 64-bit     x       y       y    n    y        y           n
Solaris2.8 32-bit     x       y       y    n    y        y           y
IRIX6.5               x       n       y    n    y        y           y
IRIX64_6.5 64-bit     x       y       y    y    y        y           y
IRIX64_6.5 32-bit     x       y       y    y    y        y           y
HPUX11.00             x       n       y    n    y        y           y
OSF1 v5.1             y       n       y    n    y        y           y
T3E                   y       n       n    n    y        y           y
SV1                   y       n       n    n    y        y           y
T90 IEEE              y       n       n    n    y        y           n
TFLOPS                y       n       n    n    n        n           n
AIX-5.1 32-bit        y       n       y    n    y        y           y
AIX-5.1 64-bit        y       n       y    n    y        y           y
WinXP           (6)   y       n       y    n    n        y           y
WinXP Intel           y       n       y    n    n        y           y
Win2000               y       n       y    n    n        y           y
Win2000 Intel         y       n       y    n    n        y           y
WinNT CW              y       n       y    n    n        y           y
Mac OS X 10.2         y       n       y    n    y        y           n
FreeBSD               y       y       y    n    y        y           y
Linux 2.4 gcc   (3)   y       y       y    n    y        y           y
Linux 2.4 Intel (3)   y       n       y    n    y        n           n
Linux 2.4 PGI   (3)   y       n       y    n    y        n           n
Linux 2.4 IA32 Intel  y       n       y    n    y        y           y
Linux 2.4 IA64 Intel  y       n       y    n    y        y           y

    Notes: (1) Using mpich 1.2.4.
           (2) Using mpt and mpich 1.2.4.
           (3) Linux 2.4 with GNU, Intel, and PGI compilers, respectively.
           (4) Shared libraries are provided only for the C library, except 
               on Windows where they are provided for C and C++.
           (5) Using mpt.
           (6) Binaries only; source code for this platform is not being 
               released at this time.
           (7) Includes the H4toH5 Library and the h4toh5 and h5toh4 
               utilities.
    Compiler versions for each platform are listed in the preceding
    "Platforms Tested" table.



Known Problems
==============

* PGI C++ compiler fails when compiling the C++ library's tests.
  Therefore, we cannot verify that the C++ library built with the PGI C++
  compiler is correct.

* The h5dump tests may fail to match the expected output on some platforms
  (e.g. parallel jobs, Windows) where the error messages directed to
  "stderr" do not appear in the "right order" with output from stdout.
  This is not an error.

* The stream-vfd test uses ip port 10007 for testing. If another
  application is already using that port address, the test will hang
  indefinitely and has to be terminated by the kill command. To try the
  test again, change the port address in test/stream_test.c to one not
  being used in the host.

* The --enable-static-exec configure flag fails to compile for Solaris
  platforms. This is due to the fact that not all of the system
  libraries on Solaris are available in a static format.

  The --enable-static-exec configure flag also fails to correctly compile
  on IBM SP2 platform for the serial mode. The parallel mode works fine
  with this option.
  
  It is suggested that you don't use this option on these platforms
  during configuration.

* With the gcc 2.95.2 compiler, HDF 5 uses the `-ansi' flag during
  compilation. The ANSI version of the compiler complains about not being
  able to handle the `long long' datatype with the warning:

        warning: ANSI C does not support `long long'
  
  This warning is innocuous and can be safely ignored.


* The Stream VFD was not tested yet under Windows. It is not supported
  in the TFLOPS machine.


* The ./dsets tests failed in the TFLOPS machine if the test program,
  dsets.c, is compiled with the -O option.  The hdf5 library still works
  correctly with the -O option.  The test program works fine if it is
  compiled with -O1 or -O0.  Only -O (same as -O2) causes the test
  program to fail.

* Certain platforms give false negatives when testing h5ls:
    - Cray J90 and Cray T90IEEE give errors during testing when displaying
      some floating-point values. These are benign differences due to
      the different precision in the values displayed and h5ls appears to
      be dumping floating-point numbers correctly.

* Before building HDF5 F90 Library from source on Crays 
  replace H5Aff.f90, H5Dff.f90 and H5Pff.f90 files in the fortran/src
  subdirectory in the top level directory with the Cray-specific files
  from the site:

* On some platforms that use Intel compilers to build HDF5 fortran library,
  compilation may fail for fortranlib_test.f90, fflush1.f90 and fflush2.f90
  complaining about exit subroutine. Comment out the line 
  IF (total_error .ne. 0) CALL exit (total_error)

  ftp://hdf.ncsa.uiuc.edu/pub/outgoing/hdf5/hdf5-1.6.0/F90_source_for_Crays

* On IA32 and IA64 systems, if you use a compiler other than GCC (such as
  Intel's ecc or icc compilers), you will need to modify the generated
  "libtool" program after configuration is finished. On or around line 104 of
  the libtool file, there are lines which look like:

      # How to pass a linker flag through the compiler.
      wl=""

  change these lines to this:

      # How to pass a linker flag through the compiler.
      wl="-Wl,"

  UPDATE: This is now done automatically by the configure script. However, if
  you still experience a problem, you may want to check this line in the
  libtool file and make sure that it has the correct value.

* Information about building with PGI and Intel compilers is available in
  INSTALL file sections 5.7 and 5.8