1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5B.c
* Jul 10 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Implements balanced, sibling-linked, N-ary trees
* capable of storing any type of data with unique key
* values.
*
* A B-link-tree is a balanced tree where each node has
* a pointer to its left and right siblings. A
* B-link-tree is a rooted tree having the following
* properties:
*
* 1. Every node, x, has the following fields:
*
* a. level[x], the level in the tree at which node
* x appears. Leaf nodes are at level zero.
*
* b. n[x], the number of children pointed to by the
* node. Internal nodes point to subtrees while
* leaf nodes point to arbitrary data.
*
* c. The child pointers themselves, child[x,i] such
* that 0 <= i < n[x].
*
* d. n[x]+1 key values stored in increasing
* order:
*
* key[x,0] < key[x,1] < ... < key[x,n[x]].
*
* e. left[x] is a pointer to the node's left sibling
* or the null pointer if this is the left-most
* node at this level in the tree.
*
* f. right[x] is a pointer to the node's right
* sibling or the null pointer if this is the
* right-most node at this level in the tree.
*
* 3. The keys key[x,i] partition the key spaces of the
* children of x:
*
* key[x,i] <= key[child[x,i],j] <= key[x,i+1]
*
* for any valid combination of i and j.
*
* 4. There are lower and upper bounds on the number of
* child pointers a node can contain. These bounds
* can be expressed in terms of a fixed integer k>=2
* called the `minimum degree' of the B-tree.
*
* a. Every node other than the root must have at least
* k child pointers and k+1 keys. If the tree is
* nonempty, the root must have at least one child
* pointer and two keys.
*
* b. Every node can contain at most 2k child pointers
* and 2k+1 keys. A node is `full' if it contains
* exactly 2k child pointers and 2k+1 keys.
*
* 5. When searching for a particular value, V, and
* key[V] = key[x,i] for some node x and entry i,
* then:
*
* a. If i=0 the child[0] is followed.
*
* b. If i=n[x] the child[n[x]-1] is followed.
*
* c. Otherwise, the child that is followed
* (either child[x,i-1] or child[x,i]) is
* determined by the type of object to which the
* leaf nodes of the tree point and is controlled
* by the key comparison function registered for
* that type of B-tree.
*
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5B_PACKAGE /*suppress error about including H5Bpkg */
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5ACprivate.h" /* Metadata cache */
#include "H5Bpkg.h" /* B-link trees */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File memory management */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
/****************/
/* Local Macros */
/****************/
#define H5B_SIZEOF_HDR(F) \
(H5B_SIZEOF_MAGIC + /*magic number */ \
4 + /*type, level, num entries */ \
2*H5F_SIZEOF_ADDR(F)) /*left and right sibling addresses */
#define H5B_NKEY(b,shared,idx) ((b)->native+(shared)->nkey[(idx)])
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Local Prototypes */
/********************/
static H5B_ins_t H5B_insert_helper(H5F_t *f, hid_t dxpl_id, haddr_t addr,
const H5B_class_t *type,
uint8_t *lt_key,
hbool_t *lt_key_changed,
uint8_t *md_key, void *udata,
uint8_t *rt_key,
hbool_t *rt_key_changed,
haddr_t *retval);
static herr_t H5B_insert_child(H5B_t *bt, unsigned *bt_flags,
unsigned idx, haddr_t child,
H5B_ins_t anchor, const void *md_key);
static herr_t H5B_split(H5F_t *f, hid_t dxpl_id, H5B_t *old_bt,
unsigned *old_bt_flags, haddr_t old_addr,
unsigned idx, void *udata, haddr_t *new_addr/*out*/);
static H5B_t * H5B_copy(const H5B_t *old_bt);
#ifdef H5B_DEBUG
static herr_t H5B_assert(H5F_t *f, hid_t dxpl_id, haddr_t addr, const H5B_class_t *type,
void *udata);
#endif
/*********************/
/* Package Variables */
/*********************/
/* Declare a free list to manage the haddr_t sequence information */
H5FL_SEQ_DEFINE(haddr_t);
/* Declare a PQ free list to manage the native block information */
H5FL_BLK_DEFINE(native_block);
/* Declare a free list to manage the H5B_t struct */
H5FL_DEFINE(H5B_t);
/*****************************/
/* Library Private Variables */
/*****************************/
/* Declare a free list to manage the H5B_shared_t struct */
H5FL_DEFINE(H5B_shared_t);
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5B_create
*
* Purpose: Creates a new empty B-tree leaf node. The UDATA pointer is
* passed as an argument to the sizeof_rkey() method for the
* B-tree.
*
* Return: Success: Non-negative, and the address of new node is
* returned through the ADDR_P argument.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jun 23 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* Changed the name of the ADDR argument to ADDR_P to make it
* obvious that the address is passed by reference unlike most
* other functions that take addresses.
*
* John Mainzer 6/9/05
* Removed code setting the is_dirty field of the cache info.
* This is no longer pemitted, as the cache code is now
* manageing this field. Since this function uses a call to
* H5AC_set() (which marks the entry dirty automaticly), no
* other change is required.
*
*-------------------------------------------------------------------------
*/
herr_t
H5B_create(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, void *udata,
haddr_t *addr_p/*out*/)
{
H5B_t *bt = NULL;
H5B_shared_t *shared=NULL; /* Pointer to shared B-tree info */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5B_create, FAIL)
/*
* Check arguments.
*/
assert(f);
assert(type);
assert(addr_p);
/*
* Allocate file and memory data structures.
*/
if (NULL==(bt = H5FL_MALLOC(H5B_t)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B-tree root node")
HDmemset(&bt->cache_info,0,sizeof(H5AC_info_t));
bt->level = 0;
bt->left = HADDR_UNDEF;
bt->right = HADDR_UNDEF;
bt->nchildren = 0;
if((bt->rc_shared=(type->get_shared)(f, udata))==NULL)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't retrieve B-tree node buffer")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
if (NULL==(bt->native=H5FL_BLK_MALLOC(native_block,shared->sizeof_keys)) ||
NULL==(bt->child=H5FL_SEQ_MALLOC(haddr_t,(size_t)shared->two_k)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for B-tree root node")
if (HADDR_UNDEF==(*addr_p=H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)shared->sizeof_rnode)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for B-tree root node")
/*
* Cache the new B-tree node.
*/
if (H5AC_set(f, dxpl_id, H5AC_BT, *addr_p, bt, H5AC__NO_FLAGS_SET) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "can't add B-tree root node to cache")
#ifdef H5B_DEBUG
H5B_assert(f, dxpl_id, *addr_p, shared->type, udata);
#endif
done:
if (ret_value<0) {
if(shared && shared->sizeof_rnode>0) {
H5_CHECK_OVERFLOW(shared->sizeof_rnode,size_t,hsize_t);
(void)H5MF_xfree(f, H5FD_MEM_BTREE, dxpl_id, *addr_p, (hsize_t)shared->sizeof_rnode);
} /* end if */
if (bt)
(void)H5B_dest(f,bt);
}
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_create() */ /*lint !e818 Can't make udata a pointer to const */
/*-------------------------------------------------------------------------
* Function: H5B_find
*
* Purpose: Locate the specified information in a B-tree and return
* that information by filling in fields of the caller-supplied
* UDATA pointer depending on the type of leaf node
* requested. The UDATA can point to additional data passed
* to the key comparison function.
*
* Note: This function does not follow the left/right sibling
* pointers since it assumes that all nodes can be reached
* from the parent node.
*
* Return: Non-negative on success (if found, values returned through the
* UDATA argument). Negative on failure (if not found, UDATA is
* undefined).
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jun 23 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
herr_t
H5B_find(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void *udata)
{
H5B_t *bt = NULL;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned idx=0, lt = 0, rt; /* Final, left & right key indices */
int cmp = 1; /* Key comparison value */
int ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5B_find, FAIL)
/*
* Check arguments.
*/
assert(f);
assert(type);
assert(type->decode);
assert(type->cmp3);
assert(type->found);
assert(H5F_addr_defined(addr));
/*
* Perform a binary search to locate the child which contains
* the thing for which we're searching.
*/
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree node")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
rt = bt->nchildren;
while (lt < rt && cmp) {
idx = (lt + rt) / 2;
/* compare */
if ((cmp = (type->cmp3) (f, dxpl_id, H5B_NKEY(bt,shared,idx), udata,
H5B_NKEY(bt,shared,idx+1))) < 0) {
rt = idx;
} else {
lt = idx+1;
}
}
if (cmp)
/* Note: don't push error on stack, leave that to next higher level,
* since many times the B-tree is searched in order to determine
* if an object exists in the B-tree or not. -QAK
*/
#ifdef OLD_WAY
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "B-tree key not found")
#else /* OLD_WAY */
HGOTO_DONE(FAIL)
#endif /* OLD_WAY */
/*
* Follow the link to the subtree or to the data node.
*/
assert(idx < bt->nchildren);
if (bt->level > 0) {
if (H5B_find(f, dxpl_id, type, bt->child[idx], udata) < 0)
/* Note: don't push error on stack, leave that to next higher level,
* since many times the B-tree is searched in order to determine
* if an object exists in the B-tree or not. -QAK
*/
#ifdef OLD_WAY
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "key not found in subtree")
#else /* OLD_WAY */
HGOTO_DONE(FAIL)
#endif /* OLD_WAY */
} else {
if ((type->found) (f, dxpl_id, bt->child[idx], H5B_NKEY(bt,shared,idx), udata) < 0)
/* Note: don't push error on stack, leave that to next higher level,
* since many times the B-tree is searched in order to determine
* if an object exists in the B-tree or not. -QAK
*/
#ifdef OLD_WAY
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "key not found in leaf node")
#else /* OLD_WAY */
HGOTO_DONE(FAIL)
#endif /* OLD_WAY */
}
done:
if (bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET)
< 0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release node")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_find() */
/*-------------------------------------------------------------------------
* Function: H5B_split
*
* Purpose: Split a single node into two nodes. The old node will
* contain the left children and the new node will contain the
* right children.
*
* The UDATA pointer is passed to the sizeof_rkey() method but is
* otherwise unused.
*
* The OLD_BT argument is a pointer to a protected B-tree
* node.
*
* Return: Non-negative on success (The address of the new node is
* returned through the NEW_ADDR argument). Negative on failure.
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 3 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The OLD_ADDR argument is passed by value. The NEW_ADDR
* argument has been renamed to NEW_ADDR_P
*
* John Mainzer, 6/9/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
* In this case, that required adding the new
* old_bt_dirtied_ptr parameter to the function's argument
* list.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B_split(H5F_t *f, hid_t dxpl_id, H5B_t *old_bt, unsigned *old_bt_flags,
haddr_t old_addr, unsigned idx, void *udata, haddr_t *new_addr_p/*out*/)
{
H5P_genplist_t *dx_plist; /* Data transfer property list */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned new_bt_flags = H5AC__NO_FLAGS_SET;
H5B_t *new_bt = NULL;
unsigned nleft, nright; /* Number of keys in left & right halves */
double split_ratios[3]; /* B-tree split ratios */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5B_split)
/*
* Check arguments.
*/
assert(f);
assert(old_bt);
assert(old_bt_flags);
assert(H5F_addr_defined(old_addr));
/*
* Initialize variables.
*/
shared=H5RC_GET_OBJ(old_bt->rc_shared);
HDassert(shared);
assert(old_bt->nchildren == shared->two_k);
/* Get the dataset transfer property list */
if (NULL == (dx_plist = H5I_object(dxpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list")
/* Get B-tree split ratios */
if(H5P_get(dx_plist, H5D_XFER_BTREE_SPLIT_RATIO_NAME, &split_ratios[0])<0)
HGOTO_ERROR (H5E_PLIST, H5E_CANTGET, FAIL, "Can't retrieve B-tree split ratios")
#ifdef H5B_DEBUG
if (H5DEBUG(B)) {
const char *side;
if (!H5F_addr_defined(old_bt->left) &&
!H5F_addr_defined(old_bt->right)) {
side = "ONLY";
} else if (!H5F_addr_defined(old_bt->right)) {
side = "RIGHT";
} else if (!H5F_addr_defined(old_bt->left)) {
side = "LEFT";
} else {
side = "MIDDLE";
}
fprintf(H5DEBUG(B), "H5B_split: %3u {%5.3f,%5.3f,%5.3f} %6s",
shared->two_k, split_ratios[0], split_ratios[1], split_ratios[2], side);
}
#endif
/*
* Decide how to split the children of the old node among the old node
* and the new node.
*/
if (!H5F_addr_defined(old_bt->right)) {
nleft = (unsigned)((double)shared->two_k * split_ratios[2]); /*right*/
} else if (!H5F_addr_defined(old_bt->left)) {
nleft = (unsigned)((double)shared->two_k * split_ratios[0]); /*left*/
} else {
nleft = (unsigned)((double)shared->two_k * split_ratios[1]); /*middle*/
}
/*
* Keep the new child in the same node as the child that split. This can
* result in nodes that have an unused child when data is written
* sequentially, but it simplifies stuff below.
*/
if (idx<nleft && nleft==shared->two_k) {
--nleft;
} else if (idx>=nleft && 0==nleft) {
nleft++;
}
nright = shared->two_k - nleft;
#ifdef H5B_DEBUG
if (H5DEBUG(B))
fprintf(H5DEBUG(B), " split %3d/%-3d\n", nleft, nright);
#endif
/*
* Create the new B-tree node.
*/
if (H5B_create(f, dxpl_id, shared->type, udata, new_addr_p/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to create B-tree")
if (NULL==(new_bt=H5AC_protect(f, dxpl_id, H5AC_BT, *new_addr_p, shared->type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to protect B-tree")
new_bt->level = old_bt->level;
/*
* Copy data from the old node to the new node.
*/
/* this function didn't used to mark the new bt entry as dirty. Since
* we just inserted the entry, this doesn't matter unless the entry
* somehow gets flushed between the insert and the protect. At present,
* I don't think this can happen, but it doesn't hurt to mark the entry
* dirty again.
* -- JRM
*/
new_bt_flags |= H5AC__DIRTIED_FLAG;
HDmemcpy(new_bt->native,
old_bt->native + nleft * shared->type->sizeof_nkey,
(nright+1) * shared->type->sizeof_nkey);
HDmemcpy(new_bt->child,
&old_bt->child[nleft],
nright*sizeof(haddr_t));
new_bt->nchildren = nright;
/*
* Truncate the old node.
*/
*old_bt_flags |= H5AC__DIRTIED_FLAG;
old_bt->nchildren = nleft;
/*
* Update sibling pointers.
*/
new_bt->left = old_addr;
new_bt->right = old_bt->right;
if (H5F_addr_defined(old_bt->right)) {
H5B_t *tmp_bt;
if (NULL == (tmp_bt = H5AC_protect(f, dxpl_id, H5AC_BT, old_bt->right, shared->type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load right sibling")
tmp_bt->left = *new_addr_p;
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, old_bt->right, tmp_bt,
H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
}
old_bt->right = *new_addr_p;
done:
if (new_bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, *new_addr_p, new_bt,
new_bt_flags) < 0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_split() */
/*-------------------------------------------------------------------------
* Function: H5B_insert
*
* Purpose: Adds a new item to the B-tree. If the root node of
* the B-tree splits then the B-tree gets a new address.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jun 23 1997
*
* Modifications:
* Robb Matzke, 28 Sep 1998
* The optional SPLIT_RATIOS[] indicates what percent of the child
* pointers should go in the left node when a node splits. There are
* three possibilities and a separate split ratio can be specified for
* each: [0] The node that split is the left-most node at its level of
* the tree, [1] the node that split has left and right siblings, [2]
* the node that split is the right-most node at its level of the tree.
* When a node is an only node at its level then we use the right-most
* rule. If SPLIT_RATIOS is null then default values are used.
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* John Mainzer, 6/9/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
herr_t
H5B_insert(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr,
void *udata)
{
/*
* These are defined this way to satisfy alignment constraints.
*/
uint64_t _lt_key[128], _md_key[128], _rt_key[128];
uint8_t *lt_key=(uint8_t*)_lt_key;
uint8_t *md_key=(uint8_t*)_md_key;
uint8_t *rt_key=(uint8_t*)_rt_key;
hbool_t lt_key_changed = FALSE, rt_key_changed = FALSE;
haddr_t child, old_root;
unsigned level;
H5B_t *bt;
H5B_t *new_bt; /* Copy of B-tree info */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_ins_t my_ins = H5B_INS_ERROR;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5B_insert, FAIL)
/* Check arguments. */
assert(f);
assert(type);
assert(type->sizeof_nkey <= sizeof _lt_key);
assert(H5F_addr_defined(addr));
if ((int)(my_ins = H5B_insert_helper(f, dxpl_id, addr, type, lt_key,
<_key_changed, md_key, udata, rt_key, &rt_key_changed, &child/*out*/))<0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to insert key")
if (H5B_INS_NOOP == my_ins)
HGOTO_DONE(SUCCEED)
assert(H5B_INS_RIGHT == my_ins);
/* the current root */
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to locate root of B-tree")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
level = bt->level;
if (!lt_key_changed)
HDmemcpy(lt_key, H5B_NKEY(bt,shared,0), type->sizeof_nkey);
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release new child")
bt = NULL;
/* the new node */
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, child, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load new node")
if (!rt_key_changed)
HDmemcpy(rt_key, H5B_NKEY(bt,shared,bt->nchildren), type->sizeof_nkey);
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, child, bt, H5AC__NO_FLAGS_SET) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release new child")
bt = NULL;
/*
* Copy the old root node to some other file location and make the new
* root at the old root's previous address. This prevents the B-tree
* from "moving".
*/
H5_CHECK_OVERFLOW(shared->sizeof_rnode,size_t,hsize_t);
if (HADDR_UNDEF==(old_root=H5MF_alloc(f, H5FD_MEM_BTREE, dxpl_id, (hsize_t)shared->sizeof_rnode)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "unable to allocate file space to move root")
/* update the new child's left pointer */
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, child, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load new child")
bt->left = old_root;
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, child, bt, H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release new child")
bt=NULL; /* Make certain future references will be caught */
/*
* Move the node to the new location by checking it out & checking it in
* at the new location -QAK
*/
/* Bring the old root into the cache if it's not already */
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load new child")
/* Make certain the old root info is marked as dirty before moving it, */
/* so it is certain to be written out at the new location */
/* Make a copy of the old root information */
if (NULL == (new_bt = H5B_copy(bt))) {
HCOMMON_ERROR(H5E_BTREE, H5E_CANTLOAD, "unable to copy old root");
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release new child")
HGOTO_DONE(FAIL)
}
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release new child")
bt=NULL; /* Make certain future references will be caught */
/* Move the location of the old root on the disk */
if (H5AC_rename(f, H5AC_BT, addr, old_root) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTSPLIT, FAIL, "unable to move B-tree root node")
/* clear the old root info at the old address (we already copied it) */
new_bt->left = HADDR_UNDEF;
new_bt->right = HADDR_UNDEF;
/* Set the new information for the copy */
new_bt->level = level + 1;
new_bt->nchildren = 2;
new_bt->child[0] = old_root;
HDmemcpy(H5B_NKEY(new_bt,shared,0), lt_key, shared->type->sizeof_nkey);
new_bt->child[1] = child;
HDmemcpy(H5B_NKEY(new_bt,shared,1), md_key, shared->type->sizeof_nkey);
HDmemcpy(H5B_NKEY(new_bt,shared,2), rt_key, shared->type->sizeof_nkey);
/* Insert the modified copy of the old root into the file again */
if (H5AC_set(f, dxpl_id, H5AC_BT, addr, new_bt, H5AC__NO_FLAGS_SET) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTFLUSH, FAIL, "unable to flush old B-tree root node")
#ifdef H5B_DEBUG
H5B_assert(f, dxpl_id, addr, type, udata);
#endif
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_insert() */
/*-------------------------------------------------------------------------
* Function: H5B_insert_child
*
* Purpose: Insert a child to the left or right of child[IDX] depending
* on whether ANCHOR is H5B_INS_LEFT or H5B_INS_RIGHT. The BT
* argument is a pointer to a protected B-tree node.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 8 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The CHILD argument is passed by value.
*
* John Mainzer, 6/9/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
* In this case, that required adding the new dirtied_ptr
* parameter to the function's argument list.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B_insert_child(H5B_t *bt, unsigned *bt_flags, unsigned idx,
haddr_t child, H5B_ins_t anchor, const void *md_key)
{
H5B_shared_t *shared; /* Pointer to shared B-tree info */
uint8_t *base; /* Base offset for move */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5B_insert_child)
assert(bt);
assert(bt_flags);
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
assert(bt->nchildren<shared->two_k);
/* Check for inserting right-most key into node (common when just appending
* records to an unlimited dimension chunked dataset)
*/
base=H5B_NKEY(bt,shared,(idx+1));
if((idx+1)==bt->nchildren) {
/* Make room for the new key */
HDmemcpy(base + shared->type->sizeof_nkey, base,
shared->type->sizeof_nkey); /* No overlap possible - memcpy() OK */
HDmemcpy(base, md_key, shared->type->sizeof_nkey);
/* The MD_KEY is the left key of the new node */
if (H5B_INS_RIGHT == anchor)
idx++; /* Don't have to memmove() child addresses down, just add new child */
else
/* Make room for the new child address */
bt->child[idx+1] = bt->child[idx];
} /* end if */
else {
/* Make room for the new key */
HDmemmove(base + shared->type->sizeof_nkey, base,
(bt->nchildren - idx) * shared->type->sizeof_nkey);
HDmemcpy(base, md_key, shared->type->sizeof_nkey);
/* The MD_KEY is the left key of the new node */
if (H5B_INS_RIGHT == anchor)
idx++;
/* Make room for the new child address */
HDmemmove(bt->child + idx + 1, bt->child + idx,
(bt->nchildren - idx) * sizeof(haddr_t));
} /* end if */
bt->child[idx] = child;
bt->nchildren += 1;
/* Mark node as dirty */
*bt_flags |= H5AC__DIRTIED_FLAG;
FUNC_LEAVE_NOAPI(SUCCEED)
}
/*-------------------------------------------------------------------------
* Function: H5B_insert_helper
*
* Purpose: Inserts the item UDATA into the tree rooted at ADDR and having
* the specified type.
*
* On return, if LT_KEY_CHANGED is non-zero, then LT_KEY is
* the new native left key. Similarily for RT_KEY_CHANGED
* and RT_KEY.
*
* If the node splits, then MD_KEY contains the key that
* was split between the two nodes (that is, the key that
* appears as the max key in the left node and the min key
* in the right node).
*
* Return: Success: A B-tree operation. The address of the new
* node, if the node splits, is returned through
* the NEW_NODE_P argument. The new node is always
* to the right of the previous node. This
* function is called recursively and the return
* value influences the behavior of the caller.
* See also, declaration of H5B_ins_t.
*
* Failure: H5B_INS_ERROR
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 9 1997
*
* Modifications:
*
* Robb Matzke, 28 Sep 1998
* The optional SPLIT_RATIOS[] indicates what percent of the child
* pointers should go in the left node when a node splits. There are
* three possibilities and a separate split ratio can be specified for
* each: [0] The node that split is the left-most node at its level of
* the tree, [1] the node that split has left and right siblings, [2]
* the node that split is the right-most node at its level of the tree.
* When a node is an only node at its level then we use the right-most
* rule. If SPLIT_RATIOS is null then default values are used.
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value. The NEW_NODE argument is
* renamed NEW_NODE_P
*
* John Mainzer, 6/9/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
static H5B_ins_t
H5B_insert_helper(H5F_t *f, hid_t dxpl_id, haddr_t addr, const H5B_class_t *type,
uint8_t *lt_key, hbool_t *lt_key_changed,
uint8_t *md_key, void *udata,
uint8_t *rt_key, hbool_t *rt_key_changed,
haddr_t *new_node_p/*out*/)
{
unsigned bt_flags = H5AC__NO_FLAGS_SET, twin_flags = H5AC__NO_FLAGS_SET;
H5B_t *bt = NULL, *twin = NULL;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned lt = 0, idx = 0, rt; /* Left, final & right index values */
int cmp = -1; /* Key comparison value */
haddr_t child_addr = HADDR_UNDEF;
H5B_ins_t my_ins = H5B_INS_ERROR;
H5B_ins_t ret_value = H5B_INS_ERROR; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5B_insert_helper)
/*
* Check arguments
*/
assert(f);
assert(H5F_addr_defined(addr));
assert(type);
assert(type->decode);
assert(type->cmp3);
assert(type->new_node);
assert(lt_key);
assert(lt_key_changed);
assert(rt_key);
assert(rt_key_changed);
assert(new_node_p);
*lt_key_changed = FALSE;
*rt_key_changed = FALSE;
/*
* Use a binary search to find the child that will receive the new
* data. When the search completes IDX points to the child that
* should get the new data.
*/
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to load node")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
rt = bt->nchildren;
while (lt < rt && cmp) {
idx = (lt + rt) / 2;
if ((cmp = (type->cmp3) (f, dxpl_id, H5B_NKEY(bt,shared,idx), udata,
H5B_NKEY(bt,shared,idx+1))) < 0) {
rt = idx;
} else {
lt = idx + 1;
}
}
if (0 == bt->nchildren) {
/*
* The value being inserted will be the only value in this tree. We
* must necessarily be at level zero.
*/
assert(0 == bt->level);
if ((type->new_node)(f, dxpl_id, H5B_INS_FIRST, H5B_NKEY(bt,shared,0), udata,
H5B_NKEY(bt,shared,1), bt->child + 0/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, H5B_INS_ERROR, "unable to create leaf node")
bt->nchildren = 1;
bt_flags |= H5AC__DIRTIED_FLAG;
idx = 0;
if (type->follow_min) {
if ((int)(my_ins = (type->insert)(f, dxpl_id, bt->child[idx], H5B_NKEY(bt,shared,idx),
lt_key_changed, md_key, udata, H5B_NKEY(bt,shared,idx+1),
rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "unable to insert first leaf node")
} else {
my_ins = H5B_INS_NOOP;
}
} else if (cmp < 0 && idx == 0 && bt->level > 0) {
/*
* The value being inserted is less than any value in this tree.
* Follow the minimum branch out of this node to a subtree.
*/
if ((int)(my_ins = H5B_insert_helper(f, dxpl_id, bt->child[idx], type,
H5B_NKEY(bt,shared,idx), lt_key_changed, md_key,
udata, H5B_NKEY(bt,shared,idx+1), rt_key_changed,
&child_addr/*out*/))<0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert minimum subtree")
} else if (cmp < 0 && idx == 0 && type->follow_min) {
/*
* The value being inserted is less than any leaf node out of this
* current node. Follow the minimum branch to a leaf node and let the
* subclass handle the problem.
*/
if ((int)(my_ins = (type->insert)(f, dxpl_id, bt->child[idx], H5B_NKEY(bt,shared,idx),
lt_key_changed, md_key, udata, H5B_NKEY(bt,shared,idx+1),
rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert minimum leaf node")
} else if (cmp < 0 && idx == 0) {
/*
* The value being inserted is less than any leaf node out of the
* current node. Create a new minimum leaf node out of this B-tree
* node. This node is not empty (handled above).
*/
my_ins = H5B_INS_LEFT;
HDmemcpy(md_key, H5B_NKEY(bt,shared,idx), type->sizeof_nkey);
if ((type->new_node)(f, dxpl_id, H5B_INS_LEFT, H5B_NKEY(bt,shared,idx), udata,
md_key, &child_addr/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert minimum leaf node")
*lt_key_changed = TRUE;
} else if (cmp > 0 && idx + 1 >= bt->nchildren && bt->level > 0) {
/*
* The value being inserted is larger than any value in this tree.
* Follow the maximum branch out of this node to a subtree.
*/
idx = bt->nchildren - 1;
if ((int)(my_ins = H5B_insert_helper(f, dxpl_id, bt->child[idx], type,
H5B_NKEY(bt,shared,idx), lt_key_changed, md_key, udata,
H5B_NKEY(bt,shared,idx+1), rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert maximum subtree")
} else if (cmp > 0 && idx + 1 >= bt->nchildren && type->follow_max) {
/*
* The value being inserted is larger than any leaf node out of the
* current node. Follow the maximum branch to a leaf node and let the
* subclass handle the problem.
*/
idx = bt->nchildren - 1;
if ((int)(my_ins = (type->insert)(f, dxpl_id, bt->child[idx], H5B_NKEY(bt,shared,idx),
lt_key_changed, md_key, udata, H5B_NKEY(bt,shared,idx+1),
rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert maximum leaf node")
} else if (cmp > 0 && idx + 1 >= bt->nchildren) {
/*
* The value being inserted is larger than any leaf node out of the
* current node. Create a new maximum leaf node out of this B-tree
* node.
*/
idx = bt->nchildren - 1;
my_ins = H5B_INS_RIGHT;
HDmemcpy(md_key, H5B_NKEY(bt,shared,idx+1), type->sizeof_nkey);
if ((type->new_node)(f, dxpl_id, H5B_INS_RIGHT, md_key, udata,
H5B_NKEY(bt,shared,idx+1), &child_addr/*out*/) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert maximum leaf node")
*rt_key_changed = TRUE;
} else if (cmp) {
/*
* We couldn't figure out which branch to follow out of this node. THIS
* IS A MAJOR PROBLEM THAT NEEDS TO BE FIXED --rpm.
*/
assert("INTERNAL HDF5 ERROR (contact rpm)" && 0);
#ifdef NDEBUG
HDabort();
#endif /* NDEBUG */
} else if (bt->level > 0) {
/*
* Follow a branch out of this node to another subtree.
*/
assert(idx < bt->nchildren);
if ((int)(my_ins = H5B_insert_helper(f, dxpl_id, bt->child[idx], type,
H5B_NKEY(bt,shared,idx), lt_key_changed, md_key, udata,
H5B_NKEY(bt,shared,idx+1), rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert subtree")
} else {
/*
* Follow a branch out of this node to a leaf node of some other type.
*/
assert(idx < bt->nchildren);
if ((int)(my_ins = (type->insert)(f, dxpl_id, bt->child[idx], H5B_NKEY(bt,shared,idx),
lt_key_changed, md_key, udata, H5B_NKEY(bt,shared,idx+1),
rt_key_changed, &child_addr/*out*/)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert leaf node")
}
assert((int)my_ins >= 0);
/*
* Update the left and right keys of the current node.
*/
if (*lt_key_changed) {
bt_flags |= H5AC__DIRTIED_FLAG;
if (idx > 0)
*lt_key_changed = FALSE;
else
HDmemcpy(lt_key, H5B_NKEY(bt,shared,idx), type->sizeof_nkey);
}
if (*rt_key_changed) {
bt_flags |= H5AC__DIRTIED_FLAG;
if (idx+1 < bt->nchildren)
*rt_key_changed = FALSE;
else
HDmemcpy(rt_key, H5B_NKEY(bt,shared,idx+1), type->sizeof_nkey);
}
if (H5B_INS_CHANGE == my_ins) {
/*
* The insertion simply changed the address for the child.
*/
bt->child[idx] = child_addr;
bt_flags |= H5AC__DIRTIED_FLAG;
ret_value = H5B_INS_NOOP;
} else if (H5B_INS_LEFT == my_ins || H5B_INS_RIGHT == my_ins) {
hbool_t *tmp_bt_flags_ptr = NULL;
H5B_t *tmp_bt;
/*
* If this node is full then split it before inserting the new child.
*/
if (bt->nchildren == shared->two_k) {
if (H5B_split(f, dxpl_id, bt, &bt_flags, addr, idx, udata, new_node_p/*out*/)<0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTSPLIT, H5B_INS_ERROR, "unable to split node")
if (NULL == (twin = H5AC_protect(f, dxpl_id, H5AC_BT, *new_node_p, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to load node")
if (idx<bt->nchildren) {
tmp_bt = bt;
tmp_bt_flags_ptr = &bt_flags;
} else {
idx -= bt->nchildren;
tmp_bt = twin;
tmp_bt_flags_ptr = &twin_flags;
}
} else {
tmp_bt = bt;
tmp_bt_flags_ptr = &bt_flags;
}
/* Insert the child */
if (H5B_insert_child(tmp_bt, tmp_bt_flags_ptr, idx, child_addr, my_ins, md_key) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINSERT, H5B_INS_ERROR, "can't insert child")
}
/*
* If this node split, return the mid key (the one that is shared
* by the left and right node).
*/
if (twin) {
HDmemcpy(md_key, H5B_NKEY(twin,shared,0), type->sizeof_nkey);
ret_value = H5B_INS_RIGHT;
#ifdef H5B_DEBUG
/*
* The max key in the original left node must be equal to the min key
* in the new node.
*/
cmp = (type->cmp2) (f, dxpl_id, H5B_NKEY(bt,shared,bt->nchildren), udata,
H5B_NKEY(twin,shared,0));
assert(0 == cmp);
#endif
} else {
ret_value = H5B_INS_NOOP;
}
done:
{
herr_t e1 = (bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt,
bt_flags) < 0);
herr_t e2 = (twin && H5AC_unprotect(f, dxpl_id, H5AC_BT, *new_node_p,
twin, twin_flags)<0);
if (e1 || e2) /*use vars to prevent short-circuit of side effects */
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node(s)")
}
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5B_iterate
*
* Purpose: Calls the list callback for each leaf node of the
* B-tree, passing it the UDATA structure.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jun 23 1997
*
* Modifications:
* Robb Matzke, 1999-04-21
* The key values are passed to the function which is called.
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* Quincey Koziol, 2002-04-22
* Changed callback to function pointer from static function
*
* John Mainzer, 6/10/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
herr_t
H5B_iterate(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, H5B_operator_t op, haddr_t addr, void *udata)
{
H5B_t *bt = NULL; /* Pointer to current B-tree node */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5B_iterate, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(type);
HDassert(op);
HDassert(H5F_addr_defined(addr));
HDassert(udata);
/* Protect the initial/current node */
if(NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree node")
if(bt->level > 0) {
/* Keep following the left-most child until we reach a leaf node. */
if((ret_value = H5B_iterate(f, dxpl_id, type, op, bt->child[0], udata)) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTLIST, FAIL, "unable to list B-tree node")
} /* end if */
else {
/*
* We've reached the left-most leaf. Now follow the right-sibling
* pointer from leaf to leaf until we've processed all leaves.
*/
ret_value = H5_ITER_CONT;
while(bt && ret_value == H5_ITER_CONT) {
haddr_t *child; /* Pointer to node's child addresses */
uint8_t *key; /* Pointer to node's native keys */
unsigned u; /* Local index variable */
/*
* Perform the iteration operator, which might invoke an
* application callback.
*/
for(u = 0, child = bt->child, key = bt->native; u < bt->nchildren && ret_value == H5_ITER_CONT; u++, child++, key += type->sizeof_nkey) {
ret_value = (*op)(f, dxpl_id, key, *child, key + type->sizeof_nkey, udata);
if(ret_value < 0)
HERROR(H5E_BTREE, H5E_CANTLIST, "iterator function failed");
} /* end for */
/* Check for continuing iteration */
if(ret_value == H5_ITER_CONT) {
H5B_t *next_bt; /* Pointer to next B-tree node */
haddr_t next_addr; /* Address of next node to iterate over */
/* Protect the next node to the right, if there is one */
if(H5F_addr_defined(bt->right)) {
next_addr = bt->right;
if(NULL == (next_bt = H5AC_protect(f, dxpl_id, H5AC_BT, next_addr, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "B-tree node")
} /* end if */
else {
next_addr = HADDR_UNDEF;
next_bt = NULL;
} /* end if */
/* Unprotect this node */
if(H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0) {
if(next_bt) {
HDassert(H5F_addr_defined(next_addr));
if(H5AC_unprotect(f, dxpl_id, H5AC_BT, next_addr, next_bt, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
} /* end if */
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
} /* end if */
/* Advance to the next node */
bt = next_bt;
addr = next_addr;
} /* end if */
} /* end for */
} /* end else */
done:
if(bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_iterate() */
/*-------------------------------------------------------------------------
* Function: H5B_remove_helper
*
* Purpose: The recursive part of removing an item from a B-tree. The
* sub B-tree that is being considered is located at ADDR and
* the item to remove is described by UDATA. If the removed
* item falls at the left or right end of the current level then
* it might be necessary to adjust the left and/or right keys
* (LT_KEY and/or RT_KEY) to to indicate that they changed by
* setting LT_KEY_CHANGED and/or RT_KEY_CHANGED.
*
* Return: Success: A B-tree operation, see comments for
* H5B_ins_t declaration. This function is
* called recursively and the return value
* influences the actions of the caller. It is
* also called by H5B_remove().
*
* Failure: H5B_INS_ERROR, a negative value.
*
* Programmer: Robb Matzke
* Wednesday, September 16, 1998
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* John Mainzer, 6/10/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
static H5B_ins_t
H5B_remove_helper(H5F_t *f, hid_t dxpl_id, haddr_t addr, const H5B_class_t *type,
int level, uint8_t *lt_key/*out*/,
hbool_t *lt_key_changed/*out*/, void *udata,
uint8_t *rt_key/*out*/, hbool_t *rt_key_changed/*out*/)
{
H5B_t *bt = NULL, *sibling = NULL;
unsigned bt_flags = H5AC__NO_FLAGS_SET;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned idx=0, lt=0, rt; /* Final, left & right indices */
int cmp=1; /* Key comparison value */
H5B_ins_t ret_value = H5B_INS_ERROR;
FUNC_ENTER_NOAPI(H5B_remove_helper, H5B_INS_ERROR)
assert(f);
assert(H5F_addr_defined(addr));
assert(type);
assert(type->decode);
assert(type->cmp3);
assert(lt_key && lt_key_changed);
assert(udata);
assert(rt_key && rt_key_changed);
/*
* Perform a binary search to locate the child which contains the thing
* for which we're searching.
*/
if (NULL==(bt=H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to load B-tree node")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
rt = bt->nchildren;
while (lt<rt && cmp) {
idx = (lt+rt)/2;
if ((cmp=(type->cmp3)(f, dxpl_id, H5B_NKEY(bt,shared,idx), udata,
H5B_NKEY(bt,shared,idx+1)))<0) {
rt = idx;
} else {
lt = idx+1;
}
}
if (cmp)
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, H5B_INS_ERROR, "B-tree key not found")
/*
* Follow the link to the subtree or to the data node. The return value
* will be one of H5B_INS_ERROR, H5B_INS_NOOP, or H5B_INS_REMOVE.
*/
assert(idx<bt->nchildren);
if (bt->level>0) {
/* We're at an internal node -- call recursively */
if ((int)(ret_value=H5B_remove_helper(f, dxpl_id,
bt->child[idx], type, level+1, H5B_NKEY(bt,shared,idx)/*out*/,
lt_key_changed/*out*/, udata, H5B_NKEY(bt,shared,idx+1)/*out*/,
rt_key_changed/*out*/))<0)
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, H5B_INS_ERROR, "key not found in subtree")
} else if (type->remove) {
/*
* We're at a leaf node but the leaf node points to an object that
* has a removal method. Pass the removal request to the pointed-to
* object and let it decide how to progress.
*/
if ((int)(ret_value=(type->remove)(f, dxpl_id,
bt->child[idx], H5B_NKEY(bt,shared,idx), lt_key_changed, udata,
H5B_NKEY(bt,shared,idx+1), rt_key_changed))<0)
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, H5B_INS_ERROR, "key not found in leaf node")
} else {
/*
* We're at a leaf node which points to an object that has no removal
* method. The best we can do is to leave the object alone but
* remove the B-tree reference to the object.
*/
*lt_key_changed = FALSE;
*rt_key_changed = FALSE;
ret_value = H5B_INS_REMOVE;
}
/*
* Update left and right key dirty bits if the subtree indicates that they
* have changed. If the subtree's left key changed and the subtree is the
* left-most child of the current node then we must update the key in our
* parent and indicate that it changed. Similarly, if the right subtree
* key changed and it's the right most key of this node we must update
* our right key and indicate that it changed.
*/
if (*lt_key_changed) {
bt_flags |= H5AC__DIRTIED_FLAG;
if (idx>0)
/* Don't propagate change out of this B-tree node */
*lt_key_changed = FALSE;
else
HDmemcpy(lt_key, H5B_NKEY(bt,shared,idx), type->sizeof_nkey);
}
if (*rt_key_changed) {
bt_flags |= H5AC__DIRTIED_FLAG;
if (idx+1<bt->nchildren) {
/* Don't propagate change out of this B-tree node */
*rt_key_changed = FALSE;
} else {
HDmemcpy(rt_key, H5B_NKEY(bt,shared,idx+1), type->sizeof_nkey);
/* Since our right key was changed, we must check for a right
* sibling and change it's left-most key as well.
* (Handle the ret_value==H5B_INS_REMOVE case below)
*/
if (ret_value!=H5B_INS_REMOVE && level>0) {
if (H5F_addr_defined(bt->right)) {
if (NULL == (sibling = H5AC_protect(f, dxpl_id, H5AC_BT, bt->right, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to unlink node from tree")
/* Make certain the native key for the right sibling is set up */
HDmemcpy(H5B_NKEY(sibling,shared,0), H5B_NKEY(bt,shared,idx+1), type->sizeof_nkey);
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, bt->right, sibling,
H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node from tree")
sibling=NULL; /* Make certain future references will be caught */
}
}
}
}
/*
* If the subtree returned H5B_INS_REMOVE then we should remove the
* subtree entry from the current node. There are four cases:
*/
if (H5B_INS_REMOVE==ret_value && 1==bt->nchildren) {
/*
* The subtree is the only child of this node. Discard both
* keys and the subtree pointer. Free this node (unless it's the
* root node) and return H5B_INS_REMOVE.
*/
bt_flags |= H5AC__DIRTIED_FLAG;
bt->nchildren = 0;
if (level>0) {
if (H5F_addr_defined(bt->left)) {
if (NULL == (sibling = H5AC_protect(f, dxpl_id, H5AC_BT, bt->left, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to load node from tree")
sibling->right = bt->right;
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, bt->left, sibling,
H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node from tree")
sibling=NULL; /* Make certain future references will be caught */
}
if (H5F_addr_defined(bt->right)) {
if (NULL == (sibling = H5AC_protect(f, dxpl_id, H5AC_BT, bt->right, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to unlink node from tree")
/* Copy left-most key from deleted node to left-most key in it's right neighbor */
HDmemcpy(H5B_NKEY(sibling,shared,0), H5B_NKEY(bt,shared,0), type->sizeof_nkey);
sibling->left = bt->left;
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, bt->right, sibling,
H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node from tree")
sibling=NULL; /* Make certain future references will be caught */
}
bt->left = HADDR_UNDEF;
bt->right = HADDR_UNDEF;
H5_CHECK_OVERFLOW(shared->sizeof_rnode,size_t,hsize_t);
if (H5MF_xfree(f, H5FD_MEM_BTREE, dxpl_id, addr, (hsize_t)shared->sizeof_rnode)<0
|| H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, bt_flags | H5C__DELETED_FLAG)<0) {
bt = NULL;
bt_flags = H5AC__NO_FLAGS_SET;
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to free B-tree node")
}
bt = NULL;
bt_flags = H5AC__NO_FLAGS_SET;
}
} else if (H5B_INS_REMOVE==ret_value && 0==idx) {
/*
* The subtree is the left-most child of this node. We discard the
* left-most key and the left-most child (the child has already been
* freed) and shift everything down by one. We copy the new left-most
* key into lt_key and notify the caller that the left key has
* changed. Return H5B_INS_NOOP.
*/
bt_flags |= H5AC__DIRTIED_FLAG;
bt->nchildren -= 1;
HDmemmove(bt->native,
bt->native + type->sizeof_nkey,
(bt->nchildren+1) * type->sizeof_nkey);
HDmemmove(bt->child,
bt->child+1,
bt->nchildren * sizeof(haddr_t));
HDmemcpy(lt_key, H5B_NKEY(bt,shared,0), type->sizeof_nkey);
*lt_key_changed = TRUE;
ret_value = H5B_INS_NOOP;
} else if (H5B_INS_REMOVE==ret_value && idx+1==bt->nchildren) {
/*
* The subtree is the right-most child of this node. We discard the
* right-most key and the right-most child (the child has already been
* freed). We copy the new right-most key into rt_key and notify the
* caller that the right key has changed. Return H5B_INS_NOOP.
*/
bt_flags |= H5AC__DIRTIED_FLAG;
bt->nchildren -= 1;
HDmemcpy(rt_key, H5B_NKEY(bt,shared,bt->nchildren), type->sizeof_nkey);
*rt_key_changed = TRUE;
/* Since our right key was changed, we must check for a right
* sibling and change it's left-most key as well.
* (Handle the ret_value==H5B_INS_REMOVE case below)
*/
if (level>0) {
if (H5F_addr_defined(bt->right)) {
if (NULL == (sibling = H5AC_protect(f, dxpl_id, H5AC_BT, bt->right, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, H5B_INS_ERROR, "unable to unlink node from tree")
HDmemcpy(H5B_NKEY(sibling,shared,0), H5B_NKEY(bt,shared,bt->nchildren), type->sizeof_nkey);
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, bt->right, sibling,
H5AC__DIRTIED_FLAG) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node from tree")
sibling=NULL; /* Make certain future references will be caught */
}
}
ret_value = H5B_INS_NOOP;
} else if (H5B_INS_REMOVE==ret_value) {
/*
* There are subtrees out of this node to both the left and right of
* the subtree being removed. The key to the left of the subtree and
* the subtree are removed from this node and all keys and nodes to
* the right are shifted left by one place. The subtree has already
* been freed). Return H5B_INS_NOOP.
*/
bt_flags |= H5AC__DIRTIED_FLAG;
bt->nchildren -= 1;
HDmemmove(bt->native + idx * type->sizeof_nkey,
bt->native + (idx+1) * type->sizeof_nkey,
(bt->nchildren+1-idx) * type->sizeof_nkey);
HDmemmove(bt->child+idx,
bt->child+idx+1,
(bt->nchildren-idx) * sizeof(haddr_t));
ret_value = H5B_INS_NOOP;
} else {
ret_value = H5B_INS_NOOP;
}
done:
if (bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, bt_flags)<0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, H5B_INS_ERROR, "unable to release node")
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5B_remove
*
* Purpose: Removes an item from a B-tree.
*
* Note: The current version does not attempt to rebalance the tree.
* (Read the paper Yao & Lehman paper for details on why)
*
* Return: Non-negative on success/Negative on failure (failure includes
* not being able to find the object which is to be removed).
*
* Programmer: Robb Matzke
* Wednesday, September 16, 1998
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* John Mainzer, 6/8/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
herr_t
H5B_remove(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void *udata)
{
/* These are defined this way to satisfy alignment constraints */
uint64_t _lt_key[128], _rt_key[128];
uint8_t *lt_key = (uint8_t*)_lt_key; /*left key*/
uint8_t *rt_key = (uint8_t*)_rt_key; /*right key*/
hbool_t lt_key_changed = FALSE; /*left key changed?*/
hbool_t rt_key_changed = FALSE; /*right key changed?*/
unsigned bt_flags = H5AC__NO_FLAGS_SET;
H5B_t *bt = NULL; /*btree node */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5B_remove, FAIL)
/* Check args */
assert(f);
assert(type);
assert(type->sizeof_nkey <= sizeof _lt_key);
assert(H5F_addr_defined(addr));
/* The actual removal */
if (H5B_remove_helper(f, dxpl_id, addr, type, 0, lt_key, <_key_changed,
udata, rt_key, &rt_key_changed)==H5B_INS_ERROR)
HGOTO_ERROR(H5E_BTREE, H5E_CANTINIT, FAIL, "unable to remove entry from B-tree")
/*
* If the B-tree is now empty then make sure we mark the root node as
* being at level zero
*/
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree root node")
if (0==bt->nchildren && 0!=bt->level) {
bt->level = 0;
bt_flags |= H5AC__DIRTIED_FLAG;
}
if (H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, bt_flags) != SUCCEED)
HGOTO_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release node")
bt=NULL; /* Make certain future references will be caught */
#ifdef H5B_DEBUG
H5B_assert(f, dxpl_id, addr, type, udata);
#endif
done:
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5B_delete
*
* Purpose: Deletes an entire B-tree from the file, calling the 'remove'
* callbacks for each node.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Thursday, March 20, 2003
*
* Modifications:
*
* John Mainzer, 6/10/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
herr_t
H5B_delete(H5F_t *f, hid_t dxpl_id, const H5B_class_t *type, haddr_t addr, void *udata)
{
H5B_t *bt; /* B-tree node being operated on */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned u; /* Local index variable */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5B_delete, FAIL)
/* Check args */
assert(f);
assert(type);
assert(H5F_addr_defined(addr));
/* Lock this B-tree node into memory for now */
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_WRITE)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree node")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
/* Iterate over all children in tree, deleting them */
if (bt->level > 0) {
/* Iterate over all children in node, deleting them */
for (u=0; u<bt->nchildren; u++)
if (H5B_delete(f, dxpl_id, type, bt->child[u], udata)<0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTLIST, FAIL, "unable to delete B-tree node")
} else {
hbool_t lt_key_changed, rt_key_changed; /* Whether key changed (unused here, just for callback) */
/* Check for removal callback */
if(type->remove) {
/* Iterate over all entries in node, calling callback */
for (u=0; u<bt->nchildren; u++) {
/* Call user's callback for each entry */
if ((type->remove)(f, dxpl_id,
bt->child[u], H5B_NKEY(bt,shared,u), <_key_changed, udata,
H5B_NKEY(bt,shared,u+1), &rt_key_changed)<H5B_INS_NOOP)
HGOTO_ERROR(H5E_BTREE, H5E_NOTFOUND, FAIL, "can't remove B-tree node")
} /* end for */
} /* end if */
} /* end else */
/* Delete this node from disk */
if (H5MF_xfree(f, H5FD_MEM_BTREE, dxpl_id, addr, (hsize_t)shared->sizeof_rnode)<0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTFREE, FAIL, "unable to free B-tree node")
done:
if (bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5C__DELETED_FLAG)<0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node in cache")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B_delete() */
/*-------------------------------------------------------------------------
* Function: H5B_nodesize
*
* Purpose: Returns the number of bytes needed for this type of
* B-tree node. The size is the size of the header plus
* enough space for 2t child pointers and 2t+1 keys.
*
* If TOTAL_NKEY_SIZE is non-null, what it points to will
* be initialized with the total number of bytes required to
* hold all the key values in native order.
*
* Return: Success: Size of node in file.
*
* Failure: 0
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 3 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
size_t
H5B_nodesize(const H5F_t *f, const H5B_shared_t *shared,
size_t *total_nkey_size/*out*/)
{
size_t size;
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5B_nodesize)
/*
* Check arguments.
*/
assert(f);
assert(shared);
assert(shared->two_k > 0);
assert(shared->sizeof_rkey > 0);
/*
* Total native key size.
*/
if (total_nkey_size)
*total_nkey_size = (shared->two_k + 1) * shared->type->sizeof_nkey;
/*
* Total node size.
*/
size = (H5B_SIZEOF_HDR(f) + /*node header */
shared->two_k * H5F_SIZEOF_ADDR(f) + /*child pointers */
(shared->two_k + 1) * shared->sizeof_rkey); /*keys */
FUNC_LEAVE_NOAPI(size)
}
/*-------------------------------------------------------------------------
* Function: H5B_copy
*
* Purpose: Deep copies an existing H5B_t node.
*
* Return: Success: Pointer to H5B_t object.
*
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Apr 18 2000
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static H5B_t *
H5B_copy(const H5B_t *old_bt)
{
H5B_t *new_node = NULL;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
H5B_t *ret_value;
FUNC_ENTER_NOAPI(H5B_copy, NULL)
/*
* Check arguments.
*/
assert(old_bt);
shared=H5RC_GET_OBJ(old_bt->rc_shared);
HDassert(shared);
/* Allocate memory for the new H5B_t object */
if (NULL==(new_node = H5FL_MALLOC(H5B_t)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for B-tree root node")
/* Copy the main structure */
HDmemcpy(new_node,old_bt,sizeof(H5B_t));
if ( NULL==(new_node->native=H5FL_BLK_MALLOC(native_block,shared->sizeof_keys)) ||
NULL==(new_node->child=H5FL_SEQ_MALLOC(haddr_t,(size_t)shared->two_k)))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed for B-tree root node")
/* Copy the other structures */
HDmemcpy(new_node->native,old_bt->native,shared->sizeof_keys);
HDmemcpy(new_node->child,old_bt->child,(sizeof(haddr_t)*shared->two_k));
/* Increment the ref-count on the raw page */
H5RC_INC(new_node->rc_shared);
/* Set return value */
ret_value=new_node;
done:
if(ret_value==NULL) {
if(new_node) {
H5FL_BLK_FREE (native_block,new_node->native);
H5FL_SEQ_FREE (haddr_t,new_node->child);
H5FL_FREE (H5B_t,new_node);
} /* end if */
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* H5B_copy */
/*-------------------------------------------------------------------------
* Function: H5B_debug
*
* Purpose: Prints debugging info about a B-tree.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 4 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
herr_t
H5B_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr, FILE *stream, int indent, int fwidth,
const H5B_class_t *type, void *udata)
{
H5B_t *bt = NULL;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
unsigned u; /* Local index variable */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5B_debug, FAIL)
/*
* Check arguments.
*/
assert(f);
assert(H5F_addr_defined(addr));
assert(stream);
assert(indent >= 0);
assert(fwidth >= 0);
assert(type);
/*
* Load the tree node.
*/
if (NULL == (bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_READ)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, FAIL, "unable to load B-tree node")
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
/*
* Print the values.
*/
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
"Tree type ID:",
((shared->type->id)==H5B_SNODE_ID ? "H5B_SNODE_ID" :
((shared->type->id)==H5B_ISTORE_ID ? "H5B_ISTORE_ID" : "Unknown!")));
HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth,
"Size of node:",
shared->sizeof_rnode);
HDfprintf(stream, "%*s%-*s %Zu\n", indent, "", fwidth,
"Size of raw (disk) key:",
shared->sizeof_rkey);
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
"Dirty flag:",
bt->cache_info.is_dirty ? "True" : "False");
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Level:",
bt->level);
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
"Address of left sibling:",
bt->left);
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
"Address of right sibling:",
bt->right);
HDfprintf(stream, "%*s%-*s %u (%u)\n", indent, "", fwidth,
"Number of children (max):",
bt->nchildren, shared->two_k);
/*
* Print the child addresses
*/
for (u = 0; u < bt->nchildren; u++) {
HDfprintf(stream, "%*sChild %d...\n", indent, "", u);
HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3),
"Address:", bt->child[u]);
/* If there is a key debugging routine, use it to display the left & right keys */
if (type->debug_key) {
/* Decode the 'left' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Left Key:");
assert(H5B_NKEY(bt,shared,u));
(void)(type->debug_key)(stream, f, dxpl_id, indent+6, MAX (0, fwidth-6),
H5B_NKEY(bt,shared,u), udata);
/* Decode the 'right' key & print it */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Right Key:");
assert(H5B_NKEY(bt,shared,u+1));
(void)(type->debug_key)(stream, f, dxpl_id, indent+6, MAX (0, fwidth-6),
H5B_NKEY(bt,shared,u+1), udata);
}
}
done:
if (bt && H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_BTREE, H5E_PROTECT, FAIL, "unable to release B-tree node")
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5B_assert
*
* Purpose: Verifies that the tree is structured correctly.
*
* Return: Success: SUCCEED
*
* Failure: aborts if something is wrong.
*
* Programmer: Robb Matzke
* Tuesday, November 4, 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* John Mainzer, 6/8/05
* Modified the function to use the new dirtied parameter of
* of H5AC_unprotect() instead of modifying the is_dirty
* field of the cache info.
*
*-------------------------------------------------------------------------
*/
#ifdef H5B_DEBUG
static herr_t
H5B_assert(H5F_t *f, hid_t dxpl_id, haddr_t addr, const H5B_class_t *type, void *udata)
{
H5B_t *bt = NULL;
H5B_shared_t *shared; /* Pointer to shared B-tree info */
int i, ncell, cmp;
static int ncalls = 0;
herr_t status;
herr_t ret_value=SUCCEED; /* Return value */
/* A queue of child data */
struct child_t {
haddr_t addr;
unsigned level;
struct child_t *next;
} *head = NULL, *tail = NULL, *prev = NULL, *cur = NULL, *tmp = NULL;
FUNC_ENTER_NOAPI(H5B_assert, FAIL)
if (0==ncalls++) {
if (H5DEBUG(B)) {
fprintf(H5DEBUG(B), "H5B: debugging B-trees (expensive)\n");
}
}
/* Initialize the queue */
bt = H5AC_protect(f, dxpl_id, H5AC_BT, addr, type, udata, H5AC_READ);
assert(bt);
shared=H5RC_GET_OBJ(bt->rc_shared);
HDassert(shared);
cur = H5MM_calloc(sizeof(struct child_t));
assert (cur);
cur->addr = addr;
cur->level = bt->level;
head = tail = cur;
status = H5AC_unprotect(f, dxpl_id, H5AC_BT, addr, bt, H5AC__NO_FLAGS_SET);
assert(status >= 0);
bt=NULL; /* Make certain future references will be caught */
/*
* Do a breadth-first search of the tree. New nodes are added to the end
* of the queue as the `cur' pointer is advanced toward the end. We don't
* remove any nodes from the queue because we need them in the uniqueness
* test.
*/
for (ncell = 0; cur; ncell++) {
bt = H5AC_protect(f, dxpl_id, H5AC_BT, cur->addr, type, udata, H5AC_READ);
assert(bt);
/* Check node header */
assert(bt->level == cur->level);
if (cur->next && cur->next->level == bt->level) {
assert(H5F_addr_eq(bt->right, cur->next->addr));
} else {
assert(!H5F_addr_defined(bt->right));
}
if (prev && prev->level == bt->level) {
assert(H5F_addr_eq(bt->left, prev->addr));
} else {
assert(!H5F_addr_defined(bt->left));
}
if (cur->level > 0) {
for (i = 0; i < bt->nchildren; i++) {
/*
* Check that child nodes haven't already been seen. If they
* have then the tree has a cycle.
*/
for (tmp = head; tmp; tmp = tmp->next) {
assert(H5F_addr_ne(tmp->addr, bt->child[i]));
}
/* Add the child node to the end of the queue */
tmp = H5MM_calloc(sizeof(struct child_t));
assert (tmp);
tmp->addr = bt->child[i];
tmp->level = bt->level - 1;
tail->next = tmp;
tail = tmp;
/* Check that the keys are monotonically increasing */
cmp = (type->cmp2) (f, dxpl_id, H5B_NKEY(bt,shared,i), udata,
H5B_NKEY(bt,shared,i+1));
assert(cmp < 0);
}
}
/* Release node */
status = H5AC_unprotect(f, dxpl_id, H5AC_BT, cur->addr, bt, H5AC__NO_FLAGS_SET);
assert(status >= 0);
bt=NULL; /* Make certain future references will be caught */
/* Advance current location in queue */
prev = cur;
cur = cur->next;
}
/* Free all entries from queue */
while (head) {
tmp = head->next;
H5MM_xfree(head);
head = tmp;
}
done:
FUNC_LEAVE_NOAPI(ret_value)
}
#endif /* H5B_DEBUG */
|