1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Bcache.c
* Oct 31 2005
* Quincey Koziol
*
* Purpose: Implement B-tree metadata cache methods.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#include "H5Bmodule.h" /* This source code file is part of the H5B module */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Bpkg.h" /* B-link trees */
#include "H5Eprivate.h" /* Error handling */
#include "H5MMprivate.h" /* Memory management */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Local Prototypes */
/********************/
/* Metadata cache callbacks */
static herr_t H5B__cache_get_initial_load_size(void *udata, size_t *image_len);
static void * H5B__cache_deserialize(const void *image, size_t len, void *udata, hbool_t *dirty);
static herr_t H5B__cache_image_len(const void *thing, size_t *image_len);
static herr_t H5B__cache_serialize(const H5F_t *f, void *image, size_t len, void *thing);
static herr_t H5B__cache_free_icr(void *thing);
/*********************/
/* Package Variables */
/*********************/
/* H5B inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_BT[1] = {{
H5AC_BT_ID, /* Metadata client ID */
"v1 B-tree", /* Metadata client name (for debugging) */
H5FD_MEM_BTREE, /* File space memory type for client */
H5AC__CLASS_NO_FLAGS_SET, /* Client class behavior flags */
H5B__cache_get_initial_load_size, /* 'get_initial_load_size' callback */
NULL, /* 'get_final_load_size' callback */
NULL, /* 'verify_chksum' callback */
H5B__cache_deserialize, /* 'deserialize' callback */
H5B__cache_image_len, /* 'image_len' callback */
NULL, /* 'pre_serialize' callback */
H5B__cache_serialize, /* 'serialize' callback */
NULL, /* 'notify' callback */
H5B__cache_free_icr, /* 'free_icr' callback */
NULL, /* 'fsf_size' callback */
}};
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5B__cache_get_initial_load_size
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* May 18, 2010
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B__cache_get_initial_load_size(void *_udata, size_t *image_len)
{
H5B_cache_ud_t *udata = (H5B_cache_ud_t *)_udata; /* User data for callback */
H5B_shared_t * shared; /* Pointer to shared B-tree info */
FUNC_ENTER_PACKAGE_NOERR
/* Check arguments */
HDassert(udata);
HDassert(image_len);
/* Get shared info for B-tree */
shared = (H5B_shared_t *)H5UC_GET_OBJ(udata->rc_shared);
HDassert(shared);
/* Set the image length size */
*image_len = shared->sizeof_rnode;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5B__cache_get_initial_load_size() */
/*-------------------------------------------------------------------------
* Function: H5B__cache_deserialize
*
* Purpose: Deserialize the data structure from disk.
*
* Return: Success: Pointer to a new B-tree node.
* Failure: NULL
*
* Programmer: Quincey Koziol
* Mar 24, 2008
*
*-------------------------------------------------------------------------
*/
static void *
H5B__cache_deserialize(const void *_image, size_t H5_ATTR_UNUSED len, void *_udata,
hbool_t H5_ATTR_UNUSED *dirty)
{
H5B_t * bt = NULL; /* Pointer to the deserialized B-tree node */
H5B_cache_ud_t *udata = (H5B_cache_ud_t *)_udata; /* User data for callback */
H5B_shared_t * shared; /* Pointer to shared B-tree info */
const uint8_t * image = (const uint8_t *)_image; /* Pointer into image buffer */
uint8_t * native; /* Pointer to native keys */
unsigned u; /* Local index variable */
H5B_t * ret_value = NULL; /* Return value */
FUNC_ENTER_PACKAGE
/* check arguments */
HDassert(image);
HDassert(udata);
/* Allocate the B-tree node in memory */
if (NULL == (bt = H5FL_MALLOC(H5B_t)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "can't allocate B-tree struct")
HDmemset(&bt->cache_info, 0, sizeof(H5AC_info_t));
/* Set & increment the ref-counted "shared" B-tree information for the node */
bt->rc_shared = udata->rc_shared;
H5UC_INC(bt->rc_shared);
/* Get a pointer to the shared info, for convenience */
shared = (H5B_shared_t *)H5UC_GET_OBJ(bt->rc_shared);
HDassert(shared);
/* Allocate space for the native keys and child addresses */
if (NULL == (bt->native = H5FL_BLK_MALLOC(native_block, shared->sizeof_keys)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "can't allocate buffer for native keys")
if (NULL == (bt->child = H5FL_SEQ_MALLOC(haddr_t, (size_t)shared->two_k)))
HGOTO_ERROR(H5E_BTREE, H5E_CANTALLOC, NULL, "can't allocate buffer for child addresses")
/* magic number */
if (HDmemcmp(image, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC) != 0)
HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "wrong B-tree signature")
image += H5_SIZEOF_MAGIC;
/* node type and level */
if (*image++ != (uint8_t)udata->type->id)
HGOTO_ERROR(H5E_BTREE, H5E_CANTLOAD, NULL, "incorrect B-tree node type")
bt->level = *image++;
/* entries used */
UINT16DECODE(image, bt->nchildren);
/* Check if bt->nchildren is greater than two_k */
if (bt->nchildren > shared->two_k)
HGOTO_ERROR(H5E_BTREE, H5E_BADVALUE, NULL, "number of children is greater than maximum")
/* sibling pointers */
H5F_addr_decode(udata->f, (const uint8_t **)&image, &(bt->left));
H5F_addr_decode(udata->f, (const uint8_t **)&image, &(bt->right));
/* the child/key pairs */
native = bt->native;
for (u = 0; u < bt->nchildren; u++) {
/* Decode native key value */
if ((udata->type->decode)(shared, image, native) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTDECODE, NULL, "unable to decode key")
image += shared->sizeof_rkey;
native += udata->type->sizeof_nkey;
/* Decode address value */
H5F_addr_decode(udata->f, (const uint8_t **)&image, bt->child + u);
} /* end for */
/* Decode final key */
if (bt->nchildren > 0) {
/* Decode native key value */
if ((udata->type->decode)(shared, image, native) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTDECODE, NULL, "unable to decode key")
} /* end if */
/* Sanity check */
HDassert((size_t)((const uint8_t *)image - (const uint8_t *)_image) <= len);
/* Set return value */
ret_value = bt;
done:
if (!ret_value && bt)
if (H5B__node_dest(bt) < 0)
HDONE_ERROR(H5E_BTREE, H5E_CANTFREE, NULL, "unable to destroy B-tree node")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B__cache_deserialize() */
/*-------------------------------------------------------------------------
* Function: H5B__cache_image_len
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* May 20, 2010
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B__cache_image_len(const void *_thing, size_t *image_len)
{
const H5B_t * bt = (const H5B_t *)_thing; /* Pointer to the B-tree node */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
FUNC_ENTER_PACKAGE_NOERR
/* Check arguments */
HDassert(bt);
HDassert(image_len);
/* Get shared info for B-tree */
shared = (H5B_shared_t *)H5UC_GET_OBJ(bt->rc_shared);
HDassert(shared);
/* Set the image length size */
*image_len = shared->sizeof_rnode;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5B__cache_image_len() */
/*-------------------------------------------------------------------------
* Function: H5B__cache_serialize
*
* Purpose: Serialize the data structure for writing to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Mar 24, 2008
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B__cache_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len, void *_thing)
{
H5B_t * bt = (H5B_t *)_thing; /* Pointer to the B-tree node */
H5B_shared_t *shared; /* Pointer to shared B-tree info */
uint8_t * image = (uint8_t *)_image; /* Pointer into image buffer */
uint8_t * native; /* Pointer to native keys */
unsigned u; /* Local index counter */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* check arguments */
HDassert(image);
HDassert(bt);
HDassert(bt->rc_shared);
shared = (H5B_shared_t *)H5UC_GET_OBJ(bt->rc_shared);
HDassert(shared);
HDassert(shared->type);
HDassert(shared->type->encode);
/* magic number */
H5MM_memcpy(image, H5B_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += 4;
/* node type and level */
*image++ = (uint8_t)shared->type->id;
/* 2^8 limit: only 1 byte is used to store node level */
if (bt->level >= HDpow(2, LEVEL_BITS))
HGOTO_ERROR(H5E_BTREE, H5E_CANTENCODE, FAIL, "unable to encode node level")
H5_CHECK_OVERFLOW(bt->level, unsigned, uint8_t);
*image++ = (uint8_t)bt->level;
/* entries used */
UINT16ENCODE(image, bt->nchildren);
/* sibling pointers */
H5F_addr_encode(f, &image, bt->left);
H5F_addr_encode(f, &image, bt->right);
/* child keys and pointers */
native = bt->native;
for (u = 0; u < bt->nchildren; ++u) {
/* encode the key */
if (shared->type->encode(shared, image, native) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTENCODE, FAIL, "unable to encode B-tree key")
image += shared->sizeof_rkey;
native += shared->type->sizeof_nkey;
/* encode the child address */
H5F_addr_encode(f, &image, bt->child[u]);
} /* end for */
if (bt->nchildren > 0) {
/* Encode the final key */
if (shared->type->encode(shared, image, native) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTENCODE, FAIL, "unable to encode B-tree key")
image += shared->sizeof_rkey;
} /* end if */
/* Sanity check */
HDassert((size_t)(image - (uint8_t *)_image) <= len);
/* Clear rest of node */
HDmemset(image, 0, len - (size_t)(image - (uint8_t *)_image));
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B__cache_serialize() */
/*-------------------------------------------------------------------------
* Function: H5B__cache_free_icr
*
* Purpose: Destroy/release an "in core representation" of a data structure
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Mar 26, 2008
*
*-------------------------------------------------------------------------
*/
static herr_t
H5B__cache_free_icr(void *thing)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check arguments */
HDassert(thing);
/* Destroy B-tree node */
if (H5B__node_dest((H5B_t *)thing) < 0)
HGOTO_ERROR(H5E_BTREE, H5E_CANTFREE, FAIL, "unable to destroy B-tree node")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5B__cache_free_icr() */
|