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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Cmpio.c
* June 20 2015
* Quincey Koziol
*
* Purpose: Functions in this file implement support for parallel I/O for
* generic cache code.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#include "H5Cmodule.h" /* This source code file is part of the H5C module */
#define H5F_FRIEND /*suppress error about including H5Fpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5ACprivate.h" /* Metadata cache */
#include "H5Cpkg.h" /* Cache */
#include "H5CXprivate.h" /* API Contexts */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* Files */
#include "H5FDprivate.h" /* File drivers */
#include "H5MMprivate.h" /* Memory management */
#ifdef H5_HAVE_PARALLEL
/****************/
/* Local Macros */
/****************/
#define H5C_APPLY_CANDIDATE_LIST__DEBUG 0
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Local Prototypes */
/********************/
static herr_t H5C__collective_write(H5F_t *f);
static herr_t H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES],
unsigned entries_to_clear[H5C_RING_NTYPES]);
static herr_t H5C__flush_candidates_in_ring(H5F_t *f, H5C_ring_t ring,
unsigned entries_to_flush, unsigned entries_to_clear);
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5C_apply_candidate_list
*
* Purpose: Apply the supplied candidate list.
*
* We used to do this by simply having each process write
* every mpi_size-th entry in the candidate list, starting
* at index mpi_rank, and mark all the others clean.
*
* However, this can cause unnecessary contention in a file
* system by increasing the number of processes writing to
* adjacent locations in the HDF5 file.
*
* To attempt to minimize this, we now arange matters such
* that each process writes n adjacent entries in the
* candidate list, and marks all others clean. We must do
* this in such a fashion as to guarantee that each entry
* on the candidate list is written by exactly one process,
* and marked clean by all others.
*
* To do this, first construct a table mapping mpi_rank
* to the index of the first entry in the candidate list to
* be written by the process of that mpi_rank, and then use
* the table to control which entries are written and which
* are marked as clean as a function of the mpi_rank.
*
* Note that the table must be identical on all processes, as
* all see the same candidate list, mpi_size, and mpi_rank --
* the inputs used to construct the table.
*
* We construct the table as follows. Let:
*
* n = num_candidates / mpi_size;
*
* m = num_candidates % mpi_size;
*
* Now allocate an array of integers of length mpi_size + 1,
* and call this array candidate_assignment_table.
*
* Conceptually, if the number of candidates is a multiple
* of the mpi_size, we simply pass through the candidate list
* and assign n entries to each process to flush, with the
* index of the first entry to flush in the location in
* the candidate_assignment_table indicated by the mpi_rank
* of the process.
*
* In the more common case in which the candidate list isn't
* isn't a multiple of the mpi_size, we pretend it is, and
* give num_candidates % mpi_size processes one extra entry
* each to make things work out.
*
* Once the table is constructed, we determine the first and
* last entry this process is to flush as follows:
*
* first_entry_to_flush = candidate_assignment_table[mpi_rank]
*
* last_entry_to_flush =
* candidate_assignment_table[mpi_rank + 1] - 1;
*
* With these values determined, we simply scan through the
* candidate list, marking all entries in the range
* [first_entry_to_flush, last_entry_to_flush] for flush,
* and all others to be cleaned.
*
* Finally, we scan the LRU from tail to head, flushing
* or marking clean the candidate entries as indicated.
* If necessary, we scan the pinned list as well.
*
* Note that this function will fail if any protected or
* clean entries appear on the candidate list.
*
* This function is used in managing sync points, and
* shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/17/10
*
* Changes: Updated sanity checks to allow for the possibility that
* the slist is disabled.
* JRM -- 8/3/20
*
*-------------------------------------------------------------------------
*/
herr_t
H5C_apply_candidate_list(H5F_t * f,
H5C_t * cache_ptr,
unsigned num_candidates,
haddr_t * candidates_list_ptr,
int mpi_rank,
int mpi_size)
{
int i;
int m;
unsigned n;
unsigned first_entry_to_flush;
unsigned last_entry_to_flush;
unsigned total_entries_to_clear = 0;
unsigned total_entries_to_flush = 0;
unsigned * candidate_assignment_table = NULL;
unsigned entries_to_flush[H5C_RING_NTYPES];
unsigned entries_to_clear[H5C_RING_NTYPES];
haddr_t addr;
H5C_cache_entry_t * entry_ptr = NULL;
#if H5C_DO_SANITY_CHECKS
haddr_t last_addr;
#endif /* H5C_DO_SANITY_CHECKS */
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
char tbl_buf[1024];
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(cache_ptr != NULL);
HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC);
HDassert(num_candidates > 0);
HDassert( ( ! cache_ptr->slist_enabled ) ||
( num_candidates <= cache_ptr->slist_len ));
HDassert(candidates_list_ptr != NULL);
HDassert(0 <= mpi_rank);
HDassert(mpi_rank < mpi_size);
/* Initialize the entries_to_flush and entries_to_clear arrays */
HDmemset(entries_to_flush, 0, sizeof(entries_to_flush));
HDmemset(entries_to_clear, 0, sizeof(entries_to_clear));
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
HDfprintf(stdout, "%s:%d: setting up candidate assignment table.\n", FUNC, mpi_rank);
HDmemset(tbl_buf, 0, sizeof(tbl_buf));
HDsprintf(&(tbl_buf[0]), "candidate list = ");
for(u = 0; u < num_candidates; u++)
HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), " 0x%llx", (long long)(*(candidates_list_ptr + u)));
HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), "\n");
HDfprintf(stdout, "%s", tbl_buf);
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
if(f->shared->coll_md_write) {
/* Sanity check */
HDassert(NULL == cache_ptr->coll_write_list);
/* Create skip list of entries for collective write */
if(NULL == (cache_ptr->coll_write_list = H5SL_create(H5SL_TYPE_HADDR, NULL)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, FAIL, "can't create skip list for entries")
} /* end if */
n = num_candidates / (unsigned)mpi_size;
if(num_candidates % (unsigned)mpi_size > INT_MAX)
HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "m overflow")
m = (int)(num_candidates % (unsigned)mpi_size);
if(NULL == (candidate_assignment_table = (unsigned *)H5MM_malloc(sizeof(unsigned) * (size_t)(mpi_size + 1))))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for candidate assignment table")
candidate_assignment_table[0] = 0;
candidate_assignment_table[mpi_size] = num_candidates;
if(m == 0) { /* mpi_size is an even divisor of num_candidates */
for(i = 1; i < mpi_size; i++)
candidate_assignment_table[i] = candidate_assignment_table[i - 1] + n;
} /* end if */
else {
for(i = 1; i <= m; i++)
candidate_assignment_table[i] = candidate_assignment_table[i - 1] + n + 1;
if(num_candidates < (unsigned)mpi_size) {
for(i = m + 1; i < mpi_size; i++)
candidate_assignment_table[i] = num_candidates;
} /* end if */
else {
for(i = m + 1; i < mpi_size; i++)
candidate_assignment_table[i] = candidate_assignment_table[i - 1] + n;
} /* end else */
} /* end else */
HDassert((candidate_assignment_table[mpi_size - 1] + n) == num_candidates);
#if H5C_DO_SANITY_CHECKS
/* Verify that the candidate assignment table has the expected form */
for(i = 1; i < mpi_size - 1; i++) {
unsigned a, b;
a = candidate_assignment_table[i] - candidate_assignment_table[i - 1];
b = candidate_assignment_table[i + 1] - candidate_assignment_table[i];
HDassert( n + 1 >= a );
HDassert( a >= b );
HDassert( b >= n );
}
#endif /* H5C_DO_SANITY_CHECKS */
first_entry_to_flush = candidate_assignment_table[mpi_rank];
last_entry_to_flush = candidate_assignment_table[mpi_rank + 1] - 1;
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
for ( i = 0; i < 1024; i++ )
tbl_buf[i] = '\0';
HDsprintf(&(tbl_buf[0]), "candidate assignment table = ");
for(i = 0; i <= mpi_size; i++)
HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), " %u", candidate_assignment_table[i]);
HDsprintf(&(tbl_buf[HDstrlen(tbl_buf)]), "\n");
HDfprintf(stdout, "%s", tbl_buf);
HDfprintf(stdout, "%s:%d: flush entries [%u, %u].\n",
FUNC, mpi_rank, first_entry_to_flush, last_entry_to_flush);
HDfprintf(stdout, "%s:%d: marking entries.\n", FUNC, mpi_rank);
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
for(u = 0; u < num_candidates; u++) {
addr = candidates_list_ptr[u];
HDassert(H5F_addr_defined(addr));
#if H5C_DO_SANITY_CHECKS
if(u > 0) {
if(last_addr == addr)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "duplicate entry in cleaned list")
else if(last_addr > addr)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "candidate list not sorted")
} /* end if */
last_addr = addr;
#endif /* H5C_DO_SANITY_CHECKS */
H5C__SEARCH_INDEX(cache_ptr, addr, entry_ptr, FAIL)
if(entry_ptr == NULL)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "listed candidate entry not in cache?!?!?")
if(!entry_ptr->is_dirty)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Listed entry not dirty?!?!?")
if(entry_ptr->is_protected)
/* For now at least, we can't deal with protected entries.
* If we encounter one, scream and die. If it becomes an
* issue, we should be able to work around this.
*/
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Listed entry is protected?!?!?")
/* Sanity checks */
HDassert(entry_ptr->magic == H5C__H5C_CACHE_ENTRY_T_MAGIC);
HDassert(entry_ptr->ring >= H5C_RING_USER);
HDassert(entry_ptr->ring <= H5C_RING_SB);
HDassert(!entry_ptr->flush_immediately);
HDassert(!entry_ptr->clear_on_unprotect);
/* Determine whether the entry is to be cleared or flushed,
* and mark it accordingly. We will scan the protected and
* pinned list shortly, and clear or flush according to these
* markings.
*/
if(u >= first_entry_to_flush && u <= last_entry_to_flush) {
total_entries_to_flush++;
entries_to_flush[entry_ptr->ring]++;
entry_ptr->flush_immediately = TRUE;
} /* end if */
else {
total_entries_to_clear++;
entries_to_clear[entry_ptr->ring]++;
entry_ptr->clear_on_unprotect = TRUE;
} /* end else */
/* Entries marked as collectively accessed and are in the
* candidate list to clear from the cache have to be
* removed from the coll list. This is OK since the
* candidate list is collective and uniform across all
* ranks.
*/
if(entry_ptr->coll_access) {
entry_ptr->coll_access = FALSE;
H5C__REMOVE_FROM_COLL_LIST(cache_ptr, entry_ptr, FAIL)
} /* end if */
} /* end for */
#if H5C_DO_SANITY_CHECKS
m = 0;
n = 0;
for(i = 0; i < H5C_RING_NTYPES; i++) {
m += (int)entries_to_flush[i];
n += entries_to_clear[i];
} /* end if */
HDassert((unsigned)m == total_entries_to_flush);
HDassert(n == total_entries_to_clear);
#endif /* H5C_DO_SANITY_CHECKS */
#if H5C_APPLY_CANDIDATE_LIST__DEBUG
HDfprintf(stdout, "%s:%d: num candidates/to clear/to flush = %u/%u/%u.\n",
FUNC, mpi_rank, num_candidates, total_entries_to_clear,
total_entries_to_flush);
#endif /* H5C_APPLY_CANDIDATE_LIST__DEBUG */
/* We have now marked all the entries on the candidate list for
* either flush or clear -- now scan the LRU and the pinned list
* for these entries and do the deed. Do this via a call to
* H5C__flush_candidate_entries().
*
* Note that we are doing things in this round about manner so as
* to preserve the order of the LRU list to the best of our ability.
* If we don't do this, my experiments indicate that we will have a
* noticeably poorer hit ratio as a result.
*/
if(H5C__flush_candidate_entries(f, entries_to_flush, entries_to_clear) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "flush candidates failed")
/* If we've deferred writing to do it collectively, take care of that now */
if(f->shared->coll_md_write) {
/* Sanity check */
HDassert(cache_ptr->coll_write_list);
/* Write collective list */
if(H5C__collective_write(f) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_WRITEERROR, FAIL, "can't write metadata collectively")
} /* end if */
done:
if(candidate_assignment_table != NULL)
candidate_assignment_table = (unsigned *)H5MM_xfree((void *)candidate_assignment_table);
if(cache_ptr->coll_write_list) {
if(H5SL_close(cache_ptr->coll_write_list) < 0)
HDONE_ERROR(H5E_CACHE, H5E_CANTFREE, FAIL, "failed to destroy skip list")
cache_ptr->coll_write_list = NULL;
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C_apply_candidate_list() */
/*-------------------------------------------------------------------------
*
* Function: H5C_construct_candidate_list__clean_cache
*
* Purpose: Construct the list of entries that should be flushed to
* clean all entries in the cache.
*
* This function is used in managing sync points, and
* shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/17/10
*
* Changes: With the slist optimization, the slist is not maintained
* unless a flush is in progress. Thus we can not longer use
* cache_ptr->slist_size to determine the total size of
* the entries we must insert in the candidate list.
*
* To address this, we now use cache_ptr->dirty_index_size
* instead.
*
* JRM -- 7/27/20
*
*-------------------------------------------------------------------------
*/
herr_t
H5C_construct_candidate_list__clean_cache(H5C_t * cache_ptr)
{
size_t space_needed;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
HDassert( cache_ptr != NULL );
HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC );
/* As a sanity check, set space needed to the dirty_index_size. This
* should be the sum total of the sizes of all the dirty entries
* in the metadata cache. Note that if the slist is enabled,
* cache_ptr->slist_size should equal cache_ptr->dirty_index_size.
*/
space_needed = cache_ptr->dirty_index_size;
HDassert( ( ! cache_ptr->slist_enabled ) ||
( space_needed == cache_ptr->slist_size ) );
/* Recall that while we shouldn't have any protected entries at this
* point, it is possible that some dirty entries may reside on the
* pinned list at this point.
*/
HDassert( cache_ptr->dirty_index_size <=
(cache_ptr->dLRU_list_size + cache_ptr->pel_size) );
HDassert( ( ! cache_ptr->slist_enabled ) ||
( cache_ptr->slist_len <=
(cache_ptr->dLRU_list_len + cache_ptr->pel_len) ) );
if(space_needed > 0) { /* we have work to do */
H5C_cache_entry_t *entry_ptr;
unsigned nominated_entries_count = 0;
size_t nominated_entries_size = 0;
haddr_t nominated_addr;
HDassert( ( ! cache_ptr->slist_enabled ) ||
( cache_ptr->slist_len > 0 ) );
/* Scan the dirty LRU list from tail forward and nominate sufficient
* entries to free up the necessary space.
*/
entry_ptr = cache_ptr->dLRU_tail_ptr;
while ( ( nominated_entries_size < space_needed ) &&
( ( ! cache_ptr->slist_enabled ) ||
( nominated_entries_count < cache_ptr->slist_len ) ) &&
( entry_ptr != NULL ) ) {
HDassert( ! (entry_ptr->is_protected) );
HDassert( ! (entry_ptr->is_read_only) );
HDassert( entry_ptr->ro_ref_count == 0 );
HDassert( entry_ptr->is_dirty );
HDassert( ( ! cache_ptr->slist_enabled ) ||
( entry_ptr->in_slist ) );
nominated_addr = entry_ptr->addr;
if(H5AC_add_candidate((H5AC_t *)cache_ptr, nominated_addr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
"H5AC_add_candidate() failed")
nominated_entries_size += entry_ptr->size;
nominated_entries_count++;
entry_ptr = entry_ptr->aux_prev;
} /* end while */
HDassert( entry_ptr == NULL );
/* it is possible that there are some dirty entries on the
* protected entry list as well -- scan it too if necessary
*/
entry_ptr = cache_ptr->pel_head_ptr;
while ( ( nominated_entries_size < space_needed ) &&
( ( ! cache_ptr->slist_enabled ) ||
( nominated_entries_count < cache_ptr->slist_len ) ) &&
( entry_ptr != NULL ) ) {
if(entry_ptr->is_dirty) {
HDassert( ! (entry_ptr->is_protected) );
HDassert( ! (entry_ptr->is_read_only) );
HDassert( entry_ptr->ro_ref_count == 0 );
HDassert( entry_ptr->is_dirty );
HDassert( entry_ptr->in_slist );
nominated_addr = entry_ptr->addr;
if(H5AC_add_candidate((H5AC_t *)cache_ptr, nominated_addr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
"H5AC_add_candidate() failed")
nominated_entries_size += entry_ptr->size;
nominated_entries_count++;
} /* end if */
entry_ptr = entry_ptr->next;
} /* end while */
HDassert( ( ! cache_ptr->slist_enabled ) ||
( nominated_entries_count == cache_ptr->slist_len ) );
HDassert( nominated_entries_size == space_needed );
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C_construct_candidate_list__clean_cache() */
/*-------------------------------------------------------------------------
* Function: H5C_construct_candidate_list__min_clean
*
* Purpose: Construct the list of entries that should be flushed to
* get the cache back within its min clean constraints.
*
* This function is used in managing sync points, and
* shouldn't be used elsewhere.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/17/10
*
* Changes: With the slist optimization, the slist is not maintained
* unless a flush is in progress. Updated sanity checks to
* reflect this.
*
* JRM -- 7/27/20
*
*-------------------------------------------------------------------------
*/
herr_t
H5C_construct_candidate_list__min_clean(H5C_t * cache_ptr)
{
size_t space_needed = 0;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
HDassert( cache_ptr != NULL );
HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC );
/* compute the number of bytes (if any) that must be flushed to get the
* cache back within its min clean constraints.
*/
if(cache_ptr->max_cache_size > cache_ptr->index_size) {
if ( ( (cache_ptr->max_cache_size - cache_ptr->index_size) +
cache_ptr->cLRU_list_size) >= cache_ptr->min_clean_size ) {
space_needed = 0;
} else {
space_needed = cache_ptr->min_clean_size -
((cache_ptr->max_cache_size - cache_ptr->index_size) +
cache_ptr->cLRU_list_size);
}
} /* end if */
else {
if(cache_ptr->min_clean_size <= cache_ptr->cLRU_list_size) {
space_needed = 0;
} else {
space_needed = cache_ptr->min_clean_size -
cache_ptr->cLRU_list_size;
}
} /* end else */
if(space_needed > 0) { /* we have work to do */
H5C_cache_entry_t *entry_ptr;
unsigned nominated_entries_count = 0;
size_t nominated_entries_size = 0;
HDassert( ( ! cache_ptr->slist_enabled ) ||
( cache_ptr->slist_len > 0 ) );
/* Scan the dirty LRU list from tail forward and nominate sufficient
* entries to free up the necessary space.
*/
entry_ptr = cache_ptr->dLRU_tail_ptr;
while ( ( nominated_entries_size < space_needed ) &&
( ( ! cache_ptr->slist_enabled ) ||
( nominated_entries_count < cache_ptr->slist_len ) ) &&
( entry_ptr != NULL ) &&
( ! entry_ptr->flush_me_last ) ) {
haddr_t nominated_addr;
HDassert( ! (entry_ptr->is_protected) );
HDassert( ! (entry_ptr->is_read_only) );
HDassert( entry_ptr->ro_ref_count == 0 );
HDassert( entry_ptr->is_dirty );
HDassert( ( ! cache_ptr->slist_enabled ) ||
( entry_ptr->in_slist ) );
nominated_addr = entry_ptr->addr;
if(H5AC_add_candidate((H5AC_t *)cache_ptr, nominated_addr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, \
"H5AC_add_candidate() failed")
nominated_entries_size += entry_ptr->size;
nominated_entries_count++;
entry_ptr = entry_ptr->aux_prev;
} /* end while */
HDassert( ( ! cache_ptr->slist_enabled ) ||
( nominated_entries_count <= cache_ptr->slist_len ) );
HDassert( nominated_entries_size <= cache_ptr->dirty_index_size );
HDassert( nominated_entries_size >= space_needed );
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C_construct_candidate_list__min_clean() */
/*-------------------------------------------------------------------------
*
* Function: H5C_mark_entries_as_clean
*
* Purpose: When the H5C code is used to implement the metadata caches
* in PHDF5, only the cache with MPI_rank 0 is allowed to
* actually write entries to disk -- all other caches must
* retain dirty entries until they are advised that the
* entries are clean.
*
* This function exists to allow the H5C code to receive these
* notifications.
*
* The function receives a list of entry base addresses
* which must refer to dirty entries in the cache. If any
* of the entries are either clean or don't exist, the
* function flags an error.
*
* The function scans the list of entries and flushes all
* those that are currently unprotected with the
* H5C__FLUSH_CLEAR_ONLY_FLAG. Those that are currently
* protected are flagged for clearing when they are
* unprotected.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer
* 7/5/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5C_mark_entries_as_clean(H5F_t * f,
unsigned ce_array_len,
haddr_t * ce_array_ptr)
{
H5C_t * cache_ptr;
unsigned entries_cleared;
unsigned pinned_entries_cleared;
hbool_t progress;
unsigned entries_examined;
unsigned initial_list_len;
haddr_t addr;
unsigned pinned_entries_marked = 0;
#if H5C_DO_SANITY_CHECKS
unsigned protected_entries_marked = 0;
unsigned other_entries_marked = 0;
haddr_t last_addr;
#endif /* H5C_DO_SANITY_CHECKS */
H5C_cache_entry_t * clear_ptr = NULL;
H5C_cache_entry_t * entry_ptr = NULL;
unsigned u;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
HDassert( f );
HDassert( f->shared );
cache_ptr = f->shared->cache;
HDassert( cache_ptr );
HDassert( cache_ptr->magic == H5C__H5C_T_MAGIC );
HDassert( ce_array_len > 0 );
HDassert( ce_array_ptr != NULL );
#if H5C_DO_EXTREME_SANITY_CHECKS
if(H5C_validate_protected_entry_list(cache_ptr) < 0 ||
H5C_validate_pinned_entry_list(cache_ptr) < 0 ||
H5C_validate_lru_list(cache_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry")
#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
for(u = 0; u < ce_array_len; u++) {
addr = ce_array_ptr[u];
#if H5C_DO_SANITY_CHECKS
if(u == 0)
last_addr = addr;
else {
if(last_addr == addr)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Duplicate entry in cleaned list")
if(last_addr > addr)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "cleaned list not sorted")
} /* end else */
#if H5C_DO_EXTREME_SANITY_CHECKS
if(H5C_validate_protected_entry_list(cache_ptr) < 0
|| H5C_validate_pinned_entry_list(cache_ptr) < 0
|| H5C_validate_lru_list(cache_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed in for loop")
#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
#endif /* H5C_DO_SANITY_CHECKS */
HDassert( H5F_addr_defined(addr) );
H5C__SEARCH_INDEX(cache_ptr, addr, entry_ptr, FAIL)
if(entry_ptr == NULL) {
#if H5C_DO_SANITY_CHECKS
HDfprintf(stdout,
"H5C_mark_entries_as_clean: entry[%u] = %a not in cache.\n",
u,
addr);
#endif /* H5C_DO_SANITY_CHECKS */
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Listed entry not in cache?!?!?")
} /* end if */
else if(!entry_ptr->is_dirty) {
#if H5C_DO_SANITY_CHECKS
HDfprintf(stdout,
"H5C_mark_entries_as_clean: entry %a is not dirty!?!\n",
addr);
#endif /* H5C_DO_SANITY_CHECKS */
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "Listed entry not dirty?!?!?")
} /* end else-if */
else {
/* Mark the entry to be cleared on unprotect. We will
* scan the LRU list shortly, and clear all those entries
* not currently protected.
*/
/* Make sure first that we clear the collective flag from
it so it can be cleared */
if(TRUE == entry_ptr->coll_access) {
entry_ptr->coll_access = FALSE;
H5C__REMOVE_FROM_COLL_LIST(cache_ptr, entry_ptr, FAIL)
} /* end if */
entry_ptr->clear_on_unprotect = TRUE;
if(entry_ptr->is_pinned)
pinned_entries_marked++;
#if H5C_DO_SANITY_CHECKS
else if(entry_ptr->is_protected)
protected_entries_marked++;
else
other_entries_marked++;
#endif /* H5C_DO_SANITY_CHECKS */
}
}
/* Scan through the LRU list from back to front, and flush the
* entries whose clear_on_unprotect flags are set. Observe that
* any protected entries will not be on the LRU, and therefore
* will not be flushed at this time.
*
* Note that unlike H5C_apply_candidate_list(),
* H5C_mark_entries_as_clean() makes all its calls to
* H5C__flush_single_entry() with the H5C__FLUSH_CLEAR_ONLY_FLAG
* set. As a result, the pre_serialize() and serialize calls are
* not made.
*
* This then implies that (assuming such actions were
* permitted in the parallel case) no loads, dirties,
* resizes, or removals of other entries can occur as
* a side effect of the flush. Hence, there is no need
* for the checks for entry removal / status change
* that I ported to H5C_apply_candidate_list().
*
* However, if (in addition to allowing such operations
* in the parallel case), we allow such operations outside
* of the pre_serialize / serialize routines, this may
* cease to be the case -- requiring a review of this
* point.
* JRM -- 4/7/15
*/
entries_cleared = 0;
entries_examined = 0;
initial_list_len = cache_ptr->LRU_list_len;
entry_ptr = cache_ptr->LRU_tail_ptr;
while(entry_ptr != NULL && entries_examined <= initial_list_len &&
entries_cleared < ce_array_len) {
if(entry_ptr->clear_on_unprotect) {
entry_ptr->clear_on_unprotect = FALSE;
clear_ptr = entry_ptr;
entry_ptr = entry_ptr->prev;
entries_cleared++;
if(H5C__flush_single_entry(f, clear_ptr,
(H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG | H5C__UPDATE_PAGE_BUFFER_FLAG)) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear entry")
} /* end if */
else
entry_ptr = entry_ptr->prev;
entries_examined++;
} /* end while */
#if H5C_DO_SANITY_CHECKS
HDassert( entries_cleared == other_entries_marked );
#endif /* H5C_DO_SANITY_CHECKS */
/* It is also possible that some of the cleared entries are on the
* pinned list. Must scan that also.
*/
pinned_entries_cleared = 0;
progress = TRUE;
while((pinned_entries_cleared < pinned_entries_marked) && progress) {
progress = FALSE;
entry_ptr = cache_ptr->pel_head_ptr;
while(entry_ptr != NULL) {
if(entry_ptr->clear_on_unprotect && entry_ptr->flush_dep_ndirty_children == 0) {
entry_ptr->clear_on_unprotect = FALSE;
clear_ptr = entry_ptr;
entry_ptr = entry_ptr->next;
entries_cleared++;
pinned_entries_cleared++;
progress = TRUE;
if(H5C__flush_single_entry(f, clear_ptr,
(H5C__FLUSH_CLEAR_ONLY_FLAG | H5C__GENERATE_IMAGE_FLAG | H5C__UPDATE_PAGE_BUFFER_FLAG)) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't clear entry")
} /* end if */
else
entry_ptr = entry_ptr->next;
} /* end while */
} /* end while */
#if H5C_DO_SANITY_CHECKS
HDassert( entries_cleared == pinned_entries_marked + other_entries_marked );
HDassert( entries_cleared + protected_entries_marked == ce_array_len );
#endif /* H5C_DO_SANITY_CHECKS */
HDassert( ( entries_cleared == ce_array_len ) ||
( (ce_array_len - entries_cleared) <= cache_ptr->pl_len ) );
#if H5C_DO_SANITY_CHECKS
u = 0;
entry_ptr = cache_ptr->pl_head_ptr;
while ( entry_ptr != NULL )
{
if ( entry_ptr->clear_on_unprotect ) {
u++;
}
entry_ptr = entry_ptr->next;
}
HDassert( (entries_cleared + u) == ce_array_len );
#endif /* H5C_DO_SANITY_CHECKS */
done:
#if H5C_DO_EXTREME_SANITY_CHECKS
if(H5C_validate_protected_entry_list(cache_ptr) < 0
|| H5C_validate_pinned_entry_list(cache_ptr) < 0
|| H5C_validate_lru_list(cache_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on exit")
#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C_mark_entries_as_clean() */
/*-------------------------------------------------------------------------
*
* Function: H5C_clear_coll_entries
*
* Purpose: Clear half or the entire list of collective entries and
* mark them as independent.
*
* Return: FAIL if error is detected, SUCCEED otherwise.
*
* Programmer: Mohamad Chaarawi
* April, 2015
*
*-------------------------------------------------------------------------
*/
herr_t
H5C_clear_coll_entries(H5C_t *cache_ptr, hbool_t partial)
{
uint32_t clear_cnt;
H5C_cache_entry_t * entry_ptr = NULL;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT
entry_ptr = cache_ptr->coll_tail_ptr;
clear_cnt = (partial ? cache_ptr->coll_list_len / 2 : cache_ptr->coll_list_len);
while(entry_ptr && clear_cnt > 0) {
H5C_cache_entry_t *prev_ptr = entry_ptr->coll_prev;
/* Sanity check */
HDassert(entry_ptr->coll_access);
/* Mark entry as independent */
entry_ptr->coll_access = FALSE;
H5C__REMOVE_FROM_COLL_LIST(cache_ptr, entry_ptr, FAIL)
/* Decrement entry count */
clear_cnt--;
/* Advance to next entry */
entry_ptr = prev_ptr;
} /* end while */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C_clear_coll_entries */
/*-------------------------------------------------------------------------
*
* Function: H5C__collective_write
*
* Purpose: Perform a collective write of a list of metadata entries.
*
* Return: FAIL if error is detected, SUCCEED otherwise.
*
* Programmer: Mohamad Chaarawi
* February, 2016
*
*-------------------------------------------------------------------------
*/
static herr_t
H5C__collective_write(H5F_t *f)
{
H5AC_t *cache_ptr;
H5FD_mpio_xfer_t orig_xfer_mode = H5FD_MPIO_COLLECTIVE;
int count;
int *length_array = NULL;
MPI_Aint *buf_array = NULL;
MPI_Aint *offset_array = NULL;
MPI_Datatype btype;
hbool_t btype_created = FALSE;
MPI_Datatype ftype;
hbool_t ftype_created = FALSE;
int mpi_code;
herr_t ret_value = SUCCEED;
FUNC_ENTER_STATIC
/* Sanity checks */
HDassert(f != NULL);
cache_ptr = f->shared->cache;
HDassert(cache_ptr != NULL);
HDassert(cache_ptr->coll_write_list != NULL);
/* Get original transfer mode */
if(H5CX_get_io_xfer_mode(&orig_xfer_mode) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "can't get MPI-I/O transfer mode")
/* Get number of entries in collective write list */
count = (int)H5SL_count(cache_ptr->coll_write_list);
if(count > 0) {
H5FD_mpio_xfer_t xfer_mode = H5FD_MPIO_COLLECTIVE;
H5SL_node_t *node;
H5C_cache_entry_t *entry_ptr;
void *base_buf;
int i;
/* Set new transfer mode */
if(H5CX_set_io_xfer_mode(xfer_mode) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTSET, FAIL, "can't set MPI-I/O transfer mode")
/* Allocate arrays */
if(NULL == (length_array = (int *)H5MM_malloc((size_t)count * sizeof(int))) )
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for collective write table length array")
if(NULL == (buf_array = (MPI_Aint *)H5MM_malloc((size_t)count * sizeof(MPI_Aint))) )
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for collective buf table length array")
if(NULL == (offset_array = (MPI_Aint *)H5MM_malloc((size_t)count * sizeof(MPI_Aint))) )
HGOTO_ERROR(H5E_CACHE, H5E_CANTALLOC, FAIL, "memory allocation failed for collective offset table length array")
/* Fill arrays */
node = H5SL_first(cache_ptr->coll_write_list);
HDassert(node);
if(NULL == (entry_ptr = (H5C_cache_entry_t *)H5SL_item(node)))
HGOTO_ERROR(H5E_CACHE, H5E_NOTFOUND, FAIL, "can't retrieve skip list item")
/* Set up initial array position & buffer base address */
length_array[0] = (int)entry_ptr->size;
base_buf = entry_ptr->image_ptr;
buf_array[0] = (MPI_Aint)0;
offset_array[0] = (MPI_Aint)entry_ptr->addr;
node = H5SL_next(node);
i = 1;
while(node) {
if(NULL == (entry_ptr = (H5C_cache_entry_t *)H5SL_item(node)))
HGOTO_ERROR(H5E_CACHE, H5E_NOTFOUND, FAIL, "can't retrieve skip list item")
/* Set up array position */
length_array[i] = (int)entry_ptr->size;
buf_array[i] = (MPI_Aint)entry_ptr->image_ptr - (MPI_Aint)base_buf;
offset_array[i] = (MPI_Aint)entry_ptr->addr;
/* Advance to next node & array location */
node = H5SL_next(node);
i++;
} /* end while */
/* Create memory MPI type */
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed(count, length_array, buf_array, MPI_BYTE, &btype)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed failed", mpi_code)
btype_created = TRUE;
if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(&btype)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
/* Create file MPI type */
if(MPI_SUCCESS != (mpi_code = MPI_Type_create_hindexed(count, length_array, offset_array, MPI_BYTE, &ftype)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_create_hindexed failed", mpi_code)
ftype_created = TRUE;
if(MPI_SUCCESS != (mpi_code = MPI_Type_commit(&ftype)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code)
/* Pass buf type, file type to the file driver */
if(H5CX_set_mpi_coll_datatypes(btype, ftype) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTSET, FAIL, "can't set MPI-I/O properties")
/* Write data */
if(H5F_block_write(f, H5FD_MEM_DEFAULT, (haddr_t)0, (size_t)1, base_buf) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to write entries collectively")
} /* end if */
else {
MPI_Status mpi_stat;
MPI_File *mpi_fh_p;
MPI_File mpi_fh;
MPI_Info *info_p;
MPI_Info info;
/* This should be rewritten to call H5F_block_write, with the correct
* buffer and file datatypes (null ones). -QAK, 2018/02/21
*/
if(H5F_get_mpi_handle(f, (MPI_File **)&mpi_fh_p) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTGET, FAIL, "can't get mpi file handle")
mpi_fh = *(MPI_File*)mpi_fh_p;
if(H5F_get_mpi_info(f, &info_p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't get mpi file info")
info = *info_p;
/* just to match up with the 1st MPI_File_set_view from
* H5FD_mpio_write()
*/
if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(mpi_fh, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, "native", info)))
HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)
/* just to match up with MPI_File_write_at_all from H5FD_mpio_write() */
HDmemset(&mpi_stat, 0, sizeof(MPI_Status));
if(MPI_SUCCESS != (mpi_code = MPI_File_write_at_all(mpi_fh, (MPI_Offset)0, NULL, 0, MPI_BYTE, &mpi_stat)))
HMPI_GOTO_ERROR(FAIL, "MPI_File_write_at_all failed", mpi_code)
/* just to match up with the 2nd MPI_File_set_view (reset) in
* H5FD_mpio_write()
*/
if(MPI_SUCCESS != (mpi_code = MPI_File_set_view(mpi_fh, (MPI_Offset)0, MPI_BYTE, MPI_BYTE, "native", info)))
HMPI_GOTO_ERROR(FAIL, "MPI_File_set_view failed", mpi_code)
} /* end else */
done:
/* Free arrays */
length_array = (int *)H5MM_xfree(length_array);
buf_array = (MPI_Aint *)H5MM_xfree(buf_array);
offset_array = (MPI_Aint *)H5MM_xfree(offset_array);
/* Free MPI Types */
if(btype_created && MPI_SUCCESS != (mpi_code = MPI_Type_free(&btype)))
HMPI_DONE_ERROR(FAIL, "MPI_Type_free failed", mpi_code)
if(ftype_created && MPI_SUCCESS != (mpi_code = MPI_Type_free(&ftype)))
HMPI_DONE_ERROR(FAIL, "MPI_Type_free failed", mpi_code)
/* Reset transfer mode in API context, if changed */
if(orig_xfer_mode != H5FD_MPIO_COLLECTIVE)
if(H5CX_set_io_xfer_mode(orig_xfer_mode) < 0)
HDONE_ERROR(H5E_CACHE, H5E_CANTSET, FAIL, "can't set MPI-I/O transfer mode")
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5C__collective_write() */
/*-------------------------------------------------------------------------
* Function: H5C__flush_candidate_entries
*
* Purpose: Flush or clear (as indicated) the candidate entries that
* have been marked in the metadata cache. In so doing,
* observe rings and flush dependencies.
*
* Note that this function presumes that:
*
* 1) no candidate entries are protected,
*
* 2) all candidate entries are dirty, and
*
* 3) if a candidate entry has a dirty flush dependency
* child, that child is also a candidate entry.
*
* The function will fail if any of these preconditions are
* not met.
*
* Candidate entries are marked by setting either the
* flush_immediately or the clear_on_unprotect flags in the
* cache entry (but not both). Entries marked flush_immediately
* will be flushed, those marked clear_on_unprotect will be
* cleared.
*
* Note that this function is a modified version of
* H5C_flush_cache() -- any changes there may need to be
* reflected here and vise versa.
*
* Return: Non-negative on success/Negative on failure.
*
* Programmer: John Mainzer
* 2/10/17
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5C__flush_candidate_entries(H5F_t *f, unsigned entries_to_flush[H5C_RING_NTYPES],
unsigned entries_to_clear[H5C_RING_NTYPES])
{
#if H5C_DO_SANITY_CHECKS
int i;
uint32_t index_len = 0;
size_t index_size = (size_t)0;
size_t clean_index_size = (size_t)0;
size_t dirty_index_size = (size_t)0;
size_t slist_size = (size_t)0;
uint32_t slist_len = 0;
#endif /* H5C_DO_SANITY_CHECKS */
H5C_ring_t ring;
H5C_t * cache_ptr;
herr_t ret_value = SUCCEED;
FUNC_ENTER_STATIC
HDassert(f);
HDassert(f->shared);
cache_ptr = f->shared->cache;
HDassert(cache_ptr);
HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC);
HDassert(cache_ptr->slist_ptr);
HDassert(entries_to_flush[H5C_RING_UNDEFINED] == 0);
HDassert(entries_to_clear[H5C_RING_UNDEFINED] == 0);
#if H5C_DO_SANITY_CHECKS
HDassert(cache_ptr->index_ring_len[H5C_RING_UNDEFINED] == 0);
HDassert(cache_ptr->index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
HDassert(cache_ptr->clean_index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
HDassert(cache_ptr->dirty_index_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
HDassert(cache_ptr->slist_ring_len[H5C_RING_UNDEFINED] == 0);
HDassert(cache_ptr->slist_ring_size[H5C_RING_UNDEFINED] == (size_t)0);
for(i = H5C_RING_USER; i < H5C_RING_NTYPES; i++) {
index_len += cache_ptr->index_ring_len[i];
index_size += cache_ptr->index_ring_size[i];
clean_index_size += cache_ptr->clean_index_ring_size[i];
dirty_index_size += cache_ptr->dirty_index_ring_size[i];
slist_len += cache_ptr->slist_ring_len[i];
slist_size += cache_ptr->slist_ring_size[i];
} /* end for */
HDassert(cache_ptr->index_len == index_len);
HDassert(cache_ptr->index_size == index_size);
HDassert(cache_ptr->clean_index_size == clean_index_size);
HDassert(cache_ptr->dirty_index_size == dirty_index_size);
HDassert(cache_ptr->slist_len == slist_len);
HDassert(cache_ptr->slist_size == slist_size);
#endif /* H5C_DO_SANITY_CHECKS */
#if H5C_DO_EXTREME_SANITY_CHECKS
if(H5C_validate_protected_entry_list(cache_ptr) < 0
|| H5C_validate_pinned_entry_list(cache_ptr) < 0
|| H5C_validate_lru_list(cache_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry")
#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
cache_ptr->flush_in_progress = TRUE;
/* flush each ring, starting from the outermost ring and
* working inward.
*/
ring = H5C_RING_USER;
while(ring < H5C_RING_NTYPES) {
if(H5C__flush_candidates_in_ring(f, ring, entries_to_flush[ring], entries_to_clear[ring]) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "flush candidates in ring failed")
ring++;
} /* end while */
done:
cache_ptr->flush_in_progress = FALSE;
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C__flush_candidate_entries() */
/*-------------------------------------------------------------------------
* Function: H5C__flush_candidates_in_ring
*
* Purpose: Flush or clear (as indicated) the candidate entries
* contained in the specified cache and ring. All candidate
* entries in rings outside the specified ring must have been
* flushed (or cleared) on entry.
*
* Note that this function presumes that:
*
* 1) no candidate entries are protected,
*
* 2) all candidate entries are dirty, and
*
* 3) if a candidate entry has a dirty flush dependency
* child, that child is also a candidate entry.
*
* The function will fail if any of these preconditions are
* not met.
*
* Candidate entries are marked by setting either the
* flush_immediately or the clear_on_unprotect flags in the
* cache entry (but not both). Entries marked flush_immediately
* will be flushed, those marked clear_on_unprotect will be
* cleared.
*
* Candidate entries residing in the LRU must be flushed
* (or cleared) in LRU order to avoid performance issues.
*
* Return: Non-negative on success/Negative on failure.
*
* Programmer: John Mainzer
* 2/10/17
*
*-------------------------------------------------------------------------
*/
static herr_t
H5C__flush_candidates_in_ring(H5F_t *f, H5C_ring_t ring,
unsigned entries_to_flush, unsigned entries_to_clear)
{
H5C_t * cache_ptr;
hbool_t progress;
hbool_t restart_scan = FALSE;
unsigned entries_flushed = 0;
unsigned entries_cleared = 0;
#if H5C_DO_SANITY_CHECKS
unsigned init_index_len;
#endif /* H5C_DO_SANITY_CHECKS */
unsigned clear_flags = H5C__FLUSH_CLEAR_ONLY_FLAG |
H5C__GENERATE_IMAGE_FLAG |
H5C__UPDATE_PAGE_BUFFER_FLAG;
unsigned flush_flags = H5C__NO_FLAGS_SET;
unsigned op_flags;
H5C_cache_entry_t *op_ptr;
H5C_cache_entry_t *entry_ptr;
herr_t ret_value = SUCCEED;
FUNC_ENTER_STATIC
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
cache_ptr = f->shared->cache;
HDassert(cache_ptr);
HDassert(cache_ptr->magic == H5C__H5C_T_MAGIC);
HDassert(cache_ptr->slist_ptr);
HDassert(ring > H5C_RING_UNDEFINED);
HDassert(ring < H5C_RING_NTYPES);
#if H5C_DO_EXTREME_SANITY_CHECKS
if((H5C_validate_protected_entry_list(cache_ptr) < 0) ||
(H5C_validate_pinned_entry_list(cache_ptr) < 0) ||
(H5C_validate_lru_list(cache_ptr) < 0))
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "an extreme sanity check failed on entry")
#endif /* H5C_DO_EXTREME_SANITY_CHECKS */
#if H5C_DO_SANITY_CHECKS
/* index len should not change */
init_index_len = cache_ptr->index_len;
#endif /* H5C_DO_SANITY_CHECKS */
/* Examine entries in the LRU list, and flush or clear all entries
* so marked in the target ring.
*
* With the current implementation of flush dependencies, no entry
* in the LRU can have flush dependency children -- thus one pass
* through the LRU will be sufficient.
*
* It is possible that this will change -- hence the assertion.
*/
restart_scan = FALSE;
entry_ptr = cache_ptr->LRU_tail_ptr;
while(((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))
&& (entry_ptr != NULL)) {
hbool_t prev_is_dirty = FALSE;
H5C_cache_entry_t *next_ptr;
/* Entries in the LRU must not have flush dependency children */
HDassert(entry_ptr->flush_dep_nchildren == 0);
/* Remember dirty state of entry to advance to */
if(entry_ptr->prev != NULL)
prev_is_dirty = entry_ptr->prev->is_dirty;
/* If the entry is in the ring */
if(entry_ptr->ring == ring) {
/* If this process needs to clear this entry. */
if(entry_ptr->clear_on_unprotect) {
HDassert(entry_ptr->is_dirty);
/* Set entry and flags for operation */
op_ptr = entry_ptr;
op_flags = clear_flags;
/* Set next entry appropriately */
next_ptr = entry_ptr->next;
/* Reset entry flag */
entry_ptr->clear_on_unprotect = FALSE;
entries_cleared++;
} /* end if */
else if(entry_ptr->flush_immediately) {
HDassert(entry_ptr->is_dirty);
/* Set entry and flags for operation */
op_ptr = entry_ptr;
op_flags = flush_flags;
/* Set next entry appropriately */
next_ptr = entry_ptr->next;
/* Reset entry flag */
entry_ptr->flush_immediately = FALSE;
entries_flushed++;
} /* end else-if */
else {
/* No operation for this entry */
op_ptr = NULL;
/* Set next entry appropriately */
next_ptr = entry_ptr;
} /* end else */
/* Advance to next entry */
entry_ptr = entry_ptr->prev;
/* Check for operation */
if(op_ptr) {
/* reset entries_removed_counter and
* last_entry_removed_ptr prior to the call to
* H5C__flush_single_entry() so that we can spot
* unexpected removals of entries from the cache,
* and set the restart_scan flag if proceeding
* would be likely to cause us to scan an entry
* that is no longer in the cache.
*
* Note that as of this writing, this
* case cannot occur in the parallel case.
*
* Note also that there is no test code to verify
* that this code actually works (although similar code
* in the serial version exists and is tested).
*/
cache_ptr->entries_removed_counter = 0;
cache_ptr->last_entry_removed_ptr = NULL;
if(H5C__flush_single_entry(f, op_ptr, op_flags) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush entry")
if(cache_ptr->entries_removed_counter != 0
|| cache_ptr->last_entry_removed_ptr != NULL)
restart_scan = TRUE;
} /* end if */
} /* end if */
else {
/* Remember "next" pointer (after advancing entries) */
next_ptr = entry_ptr;
/* Advance to next entry */
entry_ptr = entry_ptr->prev;
} /* end else */
/* Check for restarts, etc. */
if((entry_ptr != NULL) &&
(restart_scan || (entry_ptr->is_dirty != prev_is_dirty)
|| (entry_ptr->next != next_ptr) || entry_ptr->is_protected
|| entry_ptr->is_pinned)) {
/* Something has happened to the LRU -- start over
* from the tail.
*
* Recall that this code should be un-reachable at present,
* as all the operations by entries on flush that could cause
* it to be reachable are disallowed in the parallel case at
* present. Hence the following assertion which should be
* removed if the above changes.
*/
HDassert(!restart_scan);
HDassert(entry_ptr->is_dirty == prev_is_dirty);
HDassert(entry_ptr->next == next_ptr);
HDassert(!entry_ptr->is_protected);
HDassert(!entry_ptr->is_pinned);
HDassert(FALSE); /* see comment above */
restart_scan = FALSE;
entry_ptr = cache_ptr->LRU_tail_ptr;
H5C__UPDATE_STATS_FOR_LRU_SCAN_RESTART(cache_ptr)
} /* end if */
} /* end while */
/* It is also possible that some of the cleared entries are on the
* pinned list. Must scan that also.
*
* Observe that in the case of the pinned entry list, most of the
* entries will have flush dependency children. As entries with
* flush dependency children may not be flushed until all of their
* children are clean, multiple passes throguh the pinned entry list
* may be required.
*
* WARNING:
*
* As we now allow unpinning, and removal of other entries as a side
* effect of flushing an entry, it is possible that the next entry
* in a PEL scan could either be no longer pinned, or no longer in
* the cache by the time we get to it.
*
* At present, this should not be possible in this case, as we disallow
* such operations in the parallel version of the library. However,
* this may change, and to that end, I have included code to detect
* such changes and cause this function to fail if they are detected.
*/
progress = TRUE;
while(progress && ((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))) {
progress = FALSE;
entry_ptr = cache_ptr->pel_head_ptr;
while((entry_ptr != NULL) &&
((entries_flushed < entries_to_flush) || (entries_cleared < entries_to_clear))) {
H5C_cache_entry_t *prev_ptr;
hbool_t next_is_dirty = FALSE;
HDassert(entry_ptr->is_pinned);
/* Remember dirty state of entry to advance to */
if(entry_ptr->next != NULL)
next_is_dirty = entry_ptr->next->is_dirty;
if(entry_ptr->ring == ring && entry_ptr->flush_dep_ndirty_children == 0) {
if(entry_ptr->clear_on_unprotect) {
HDassert(entry_ptr->is_dirty);
/* Set entry and flags for operation */
op_ptr = entry_ptr;
op_flags = clear_flags;
/* Reset entry flag */
entry_ptr->clear_on_unprotect = FALSE;
entries_cleared++;
progress = TRUE;
} /* end if */
else if(entry_ptr->flush_immediately) {
HDassert(entry_ptr->is_dirty);
/* Set entry and flags for operation */
op_ptr = entry_ptr;
op_flags = flush_flags;
/* Reset entry flag */
entry_ptr->flush_immediately = FALSE;
entries_flushed++;
progress = TRUE;
} /* end else-if */
else
/* No operation for this entry */
op_ptr = NULL;
/* Check for operation */
if(op_ptr) {
/* reset entries_removed_counter and
* last_entry_removed_ptr prior to the call to
* H5C__flush_single_entry() so that we can spot
* unexpected removals of entries from the cache,
* and set the restart_scan flag if proceeding
* would be likely to cause us to scan an entry
* that is no longer in the cache.
*
* Note that as of this writing, this
* case cannot occur in the parallel case.
*
* Note also that there is no test code to verify
* that this code actually works (although similar code
* in the serial version exists and is tested).
*/
cache_ptr->entries_removed_counter = 0;
cache_ptr->last_entry_removed_ptr = NULL;
/* Add this entry to the list of entries to collectively write
*
* This comment is misleading -- the entry will be added to the
* collective write list only if said list exists.
*
* JRM -- 2/9/17
*/
if(H5C__flush_single_entry(f, op_ptr, op_flags) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush entry")
if(cache_ptr->entries_removed_counter != 0
|| cache_ptr->last_entry_removed_ptr != NULL)
restart_scan = TRUE;
} /* end if */
} /* end if */
/* Remember "previous" pointer (after advancing entries) */
prev_ptr = entry_ptr;
/* Advance to next entry */
entry_ptr = entry_ptr->next;
/* Check for restarts, etc. */
if((entry_ptr != NULL) &&
(restart_scan || (entry_ptr->is_dirty != next_is_dirty)
|| (entry_ptr->prev != prev_ptr) || entry_ptr->is_protected
|| !entry_ptr->is_pinned)) {
/* Something has happened to the pinned entry list -- start
* over from the head.
*
* Recall that this code should be un-reachable at present,
* as all the operations by entries on flush that could cause
* it to be reachable are disallowed in the parallel case at
* present. Hence the following assertion which should be
* removed if the above changes.
*/
HDassert(!restart_scan);
HDassert(entry_ptr->is_dirty == next_is_dirty);
HDassert(entry_ptr->prev == prev_ptr);
HDassert(!entry_ptr->is_protected);
HDassert(entry_ptr->is_pinned);
HDassert(FALSE); /* see comment above */
restart_scan = FALSE;
entry_ptr = cache_ptr->pel_head_ptr;
/* we don't keeps stats for pinned entry list scan
* restarts. If this code ever becomes reachable,
* define the necessary field, and implement the
* the following macro:
*
* H5C__UPDATE_STATS_FOR_PEL_SCAN_RESTART(cache_ptr)
*/
} /* end if */
} /* end while ( ( entry_ptr != NULL ) &&
* ( ( entries_flushed > entries_to_flush ) ||
* ( entries_cleared > entries_to_clear ) ) )
*/
} /* end while ( ( ( entries_flushed > entries_to_flush ) ||
* ( entries_cleared > entries_to_clear ) ) &&
* ( progress ) )
*/
#if H5C_DO_SANITY_CHECKS
HDassert(init_index_len == cache_ptr->index_len);
#endif /* H5C_DO_SANITY_CHECKS */
if(entries_flushed != entries_to_flush || entries_cleared != entries_to_clear) {
entry_ptr = cache_ptr->il_head;
while(entry_ptr != NULL) {
HDassert(!entry_ptr->clear_on_unprotect || (entry_ptr->ring > ring));
HDassert(!entry_ptr->flush_immediately || (entry_ptr->ring > ring));
entry_ptr = entry_ptr->il_next;
} /* end while */
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "can't flush/clear all entries")
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5C__flush_candidates_in_ring() */
#endif /* H5_HAVE_PARALLEL */
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