1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/****************/
/* Module Setup */
/****************/
#include "H5Dmodule.h" /* This source code file is part of the H5D module */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
#include "H5Dpkg.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5ESprivate.h" /* Event Sets */
#include "H5FLprivate.h" /* Free lists */
#include "H5Iprivate.h" /* IDs */
#include "H5VLprivate.h" /* Virtual Object Layer */
#include "H5VLnative_private.h" /* Native VOL connector */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Local Prototypes */
/********************/
/* Helper routines for sync/async API calls */
static hid_t H5D__create_api_common(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id,
hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id, void **token_ptr,
H5VL_object_t **_vol_obj_ptr);
static hid_t H5D__open_api_common(hid_t loc_id, const char *name, hid_t dapl_id, void **token_ptr,
H5VL_object_t **_vol_obj_ptr);
static hid_t H5D__get_space_api_common(hid_t dset_id, void **token_ptr, H5VL_object_t **_vol_obj_ptr);
static herr_t H5D__read_api_common(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id,
hid_t dxpl_id, void *buf, void **token_ptr, H5VL_object_t **_vol_obj_ptr);
static herr_t H5D__write_api_common(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id,
hid_t dxpl_id, const void *buf, void **token_ptr,
H5VL_object_t **_vol_obj_ptr);
static herr_t H5D__set_extent_api_common(hid_t dset_id, const hsize_t size[], void **token_ptr,
H5VL_object_t **_vol_obj_ptr);
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/* Declare extern free list to manage the H5S_sel_iter_t struct */
H5FL_EXTERN(H5S_sel_iter_t);
/* Declare extern the free list to manage blocks of type conversion data */
H5FL_BLK_EXTERN(type_conv);
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5D__create_api_common
*
* Purpose: This is the common function for creating HDF5 datasets.
*
* Return: Success: A dataset ID
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
static hid_t
H5D__create_api_common(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id,
hid_t dcpl_id, hid_t dapl_id, void **token_ptr, H5VL_object_t **_vol_obj_ptr)
{
void *dset = NULL; /* New dataset's info */
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
H5VL_loc_params_t loc_params; /* Location parameters for object access */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_PACKAGE
/* Check arguments */
if (!name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "name parameter cannot be NULL")
if (!*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "name parameter cannot be an empty string")
/* Set up object access arguments */
if (H5VL_setup_acc_args(loc_id, H5P_CLS_DACC, TRUE, &dapl_id, vol_obj_ptr, &loc_params) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, H5I_INVALID_HID, "can't set object access arguments")
/* Get link creation property list */
if (H5P_DEFAULT == lcpl_id)
lcpl_id = H5P_LINK_CREATE_DEFAULT;
else if (TRUE != H5P_isa_class(lcpl_id, H5P_LINK_CREATE))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "lcpl_id is not a link creation property list")
/* Get dataset creation property list */
if (H5P_DEFAULT == dcpl_id)
dcpl_id = H5P_DATASET_CREATE_DEFAULT;
else if (TRUE != H5P_isa_class(dcpl_id, H5P_DATASET_CREATE))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID,
"dcpl_id is not a dataset create property list ID")
/* Set the DCPL for the API context */
H5CX_set_dcpl(dcpl_id);
/* Set the LCPL for the API context */
H5CX_set_lcpl(lcpl_id);
/* Create the dataset */
if (NULL == (dset = H5VL_dataset_create(*vol_obj_ptr, &loc_params, name, lcpl_id, type_id, space_id,
dcpl_id, dapl_id, H5P_DATASET_XFER_DEFAULT, token_ptr)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, H5I_INVALID_HID, "unable to create dataset")
/* Get an ID for the dataset */
if ((ret_value = H5VL_register(H5I_DATASET, dset, (*vol_obj_ptr)->connector, TRUE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataset")
done:
if (H5I_INVALID_HID == ret_value)
if (dset && H5VL_dataset_close(*vol_obj_ptr, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release dataset")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__create_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dcreate2
*
* Purpose: Creates a new dataset named NAME at LOC_ID, opens the
* dataset for access, and associates with that dataset constant
* and initial persistent properties including the type of each
* datapoint as stored in the file (TYPE_ID), the size of the
* dataset (SPACE_ID), and other initial miscellaneous
* properties (DCPL_ID).
*
* All arguments are copied into the dataset, so the caller is
* allowed to derive new types, dataspaces, and creation
* parameters from the old ones and reuse them in calls to
* create other datasets.
*
* Return: Success: The object ID of the new dataset. At this
* point, the dataset is ready to receive its
* raw data. Attempting to read raw data from
* the dataset will probably return the fill
* value. The dataset should be closed when the
* caller is no longer interested in it.
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id,
hid_t dapl_id)
{
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE7("i", "i*siiiii", loc_id, name, type_id, space_id, lcpl_id, dcpl_id, dapl_id);
/* Create the dataset synchronously */
if ((ret_value = H5D__create_api_common(loc_id, name, type_id, space_id, lcpl_id, dcpl_id, dapl_id, NULL,
NULL)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, H5I_INVALID_HID, "unable to synchronously create dataset")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dcreate2() */
/*-------------------------------------------------------------------------
* Function: H5Dcreate_async
*
* Purpose: Asynchronous version of H5Dcreate
*
* Return: Success: A dataset ID
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dcreate_async(const char *app_file, const char *app_func, unsigned app_line, hid_t loc_id, const char *name,
hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id, hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Object for loc_id */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE11("i", "*s*sIui*siiiiii", app_file, app_func, app_line, loc_id, name, type_id, space_id, lcpl_id,
dcpl_id, dapl_id, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Create the dataset asynchronously */
if ((ret_value = H5D__create_api_common(loc_id, name, type_id, space_id, lcpl_id, dcpl_id, dapl_id,
token_ptr, &vol_obj)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCREATE, H5I_INVALID_HID, "unable to asynchronously create dataset")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE11(__func__, "*s*sIui*siiiiii", app_file, app_func, app_line, loc_id, name, type_id, space_id, lcpl_id, dcpl_id, dapl_id, es_id)) < 0) {
/* clang-format on */
if (H5I_dec_app_ref_always_close(ret_value) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, H5I_INVALID_HID, "can't decrement count on dataset ID")
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, H5I_INVALID_HID, "can't insert token into event set")
} /* end if */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dcreate_async() */
/*-------------------------------------------------------------------------
* Function: H5Dcreate_anon
*
* Purpose: Creates a new dataset named NAME at LOC_ID, opens the
* dataset for access, and associates with that dataset constant
* and initial persistent properties including the type of each
* datapoint as stored in the file (TYPE_ID), the size of the
* dataset (SPACE_ID), and other initial miscellaneous
* properties (DCPL_ID).
*
* All arguments are copied into the dataset, so the caller is
* allowed to derive new types, dataspaces, and creation
* parameters from the old ones and reuse them in calls to
* create other datasets.
*
* The resulting ID should be linked into the file with
* H5Olink or it will be deleted when closed.
*
* Return: Success: The object ID of the new dataset. At this
* point, the dataset is ready to receive its
* raw data. Attempting to read raw data from
* the dataset will probably return the fill
* value. The dataset should be linked into
* the group hierarchy before being closed or
* it will be deleted. The dataset should be
* closed when the caller is no longer interested
* in it.
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dcreate_anon(hid_t loc_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, hid_t dapl_id)
{
void *dset = NULL; /* dset object from VOL connector */
H5VL_object_t *vol_obj = NULL; /* Object for loc_id */
H5VL_loc_params_t loc_params; /* Location parameters for object access */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE5("i", "iiiii", loc_id, type_id, space_id, dcpl_id, dapl_id);
/* Check arguments */
if (H5P_DEFAULT == dcpl_id)
dcpl_id = H5P_DATASET_CREATE_DEFAULT;
else if (TRUE != H5P_isa_class(dcpl_id, H5P_DATASET_CREATE))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "not dataset create property list ID")
/* Set the DCPL for the API context */
H5CX_set_dcpl(dcpl_id);
/* Verify access property list and set up collective metadata if appropriate */
if (H5CX_set_apl(&dapl_id, H5P_CLS_DACC, loc_id, TRUE) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, H5I_INVALID_HID, "can't set access property list info")
/* get the location object */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object(loc_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid location identifier")
/* Set location parameters */
loc_params.type = H5VL_OBJECT_BY_SELF;
loc_params.obj_type = H5I_get_type(loc_id);
/* Create the dataset */
if (NULL ==
(dset = H5VL_dataset_create(vol_obj, &loc_params, NULL, H5P_LINK_CREATE_DEFAULT, type_id, space_id,
dcpl_id, dapl_id, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, H5I_INVALID_HID, "unable to create dataset")
/* Get an ID for the dataset */
if ((ret_value = H5VL_register(H5I_DATASET, dset, vol_obj->connector, TRUE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, H5I_INVALID_HID, "unable to register dataset")
done:
/* Cleanup on failure */
if (H5I_INVALID_HID == ret_value)
if (dset && H5VL_dataset_close(vol_obj, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release dataset")
FUNC_LEAVE_API(ret_value)
} /* end H5Dcreate_anon() */
/*-------------------------------------------------------------------------
* Function: H5D__open_api_common
*
* Purpose: This is the common function for opening a dataset
*
* Return: Success: Object ID of the dataset
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
static hid_t
H5D__open_api_common(hid_t loc_id, const char *name, hid_t dapl_id, void **token_ptr,
H5VL_object_t **_vol_obj_ptr)
{
void *dset = NULL; /* dset object from VOL connector */
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
H5VL_loc_params_t loc_params; /* Location parameters for object access */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
if (!name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "name parameter cannot be NULL")
if (!*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5I_INVALID_HID, "name parameter cannot be an empty string")
/* Set up object access arguments */
if (H5VL_setup_acc_args(loc_id, H5P_CLS_DACC, FALSE, &dapl_id, vol_obj_ptr, &loc_params) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, H5I_INVALID_HID, "can't set object access arguments")
/* Open the dataset */
if (NULL == (dset = H5VL_dataset_open(*vol_obj_ptr, &loc_params, name, dapl_id, H5P_DATASET_XFER_DEFAULT,
token_ptr)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to open dataset")
/* Register an atom for the dataset */
if ((ret_value = H5VL_register(H5I_DATASET, dset, (*vol_obj_ptr)->connector, TRUE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, H5I_INVALID_HID, "can't register dataset ID")
done:
if (H5I_INVALID_HID == ret_value)
if (dset && H5VL_dataset_close(*vol_obj_ptr, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, H5I_INVALID_HID, "unable to release dataset")
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__open_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dopen2
*
* Purpose: Finds a dataset named NAME at LOC_ID, opens it, and returns
* its ID. The dataset should be close when the caller is no
* longer interested in it.
*
* Takes a dataset access property list
*
* Return: Success: Object ID of the dataset
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dopen2(hid_t loc_id, const char *name, hid_t dapl_id)
{
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE3("i", "i*si", loc_id, name, dapl_id);
/* Open the dataset synchronously */
if ((ret_value = H5D__open_api_common(loc_id, name, dapl_id, NULL, NULL)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to synchronously open dataset")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dopen2() */
/*-------------------------------------------------------------------------
* Function: H5Dopen_async
*
* Purpose: Asynchronous version of H5Dopen2
*
* Return: Success: A group ID
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dopen_async(const char *app_file, const char *app_func, unsigned app_line, hid_t loc_id, const char *name,
hid_t dapl_id, hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Object for loc_id */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE7("i", "*s*sIui*sii", app_file, app_func, app_line, loc_id, name, dapl_id, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Open the dataset asynchronously */
if ((ret_value = H5D__open_api_common(loc_id, name, dapl_id, token_ptr, &vol_obj)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, H5I_INVALID_HID, "unable to asynchronously open dataset")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE7(__func__, "*s*sIui*sii", app_file, app_func, app_line, loc_id, name, dapl_id, es_id)) < 0) {
/* clang-format on */
if (H5I_dec_app_ref_always_close(ret_value) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, H5I_INVALID_HID, "can't decrement count on dataset ID")
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, H5I_INVALID_HID, "can't insert token into event set")
} /* end if */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dopen_async() */
/*-------------------------------------------------------------------------
* Function: H5Dclose
*
* Purpose: Closes access to a dataset and releases resources used by
* it. It is illegal to subsequently use that same dataset
* ID in calls to other dataset functions.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dclose(hid_t dset_id)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", dset_id);
/* Check args */
if (H5I_DATASET != H5I_get_type(dset_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset ID")
/* Decrement the counter on the dataset. It will be freed if the count
* reaches zero.
*/
if (H5I_dec_app_ref_always_close(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't decrement count on dataset ID")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dclose() */
/*-------------------------------------------------------------------------
* Function: H5Dclose_async
*
* Purpose: Asynchronous version of H5Dclose
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dclose_async(const char *app_file, const char *app_func, unsigned app_line, hid_t dset_id, hid_t es_id)
{
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
H5VL_object_t *vol_obj = NULL; /* VOL object of dset_id */
H5VL_t *connector = NULL; /* VOL connector */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "*s*sIuii", app_file, app_func, app_line, dset_id, es_id);
/* Check args */
if (H5I_DATASET != H5I_get_type(dset_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset ID")
/* Get dataset object's connector */
if (NULL == (vol_obj = H5VL_vol_object(dset_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get VOL object for dataset")
/* Prepare for possible asynchronous operation */
if (H5ES_NONE != es_id) {
/* Increase connector's refcount, so it doesn't get closed if closing
* the dataset closes the file */
connector = vol_obj->connector;
H5VL_conn_inc_rc(connector);
/* Point at token for operation to set up */
token_ptr = &token;
} /* end if */
/* Decrement the counter on the dataset. It will be freed if the count
* reaches zero.
*/
if (H5I_dec_app_ref_always_close_async(dset_id, token_ptr) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't decrement count on dataset ID")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE5(__func__, "*s*sIuii", app_file, app_func, app_line, dset_id, es_id)) < 0)
/* clang-format on */
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "can't insert token into event set")
done:
if (connector && H5VL_conn_dec_rc(connector) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't decrement ref count on connector")
FUNC_LEAVE_API(ret_value)
} /* end H5Dclose_async() */
/*-------------------------------------------------------------------------
* Function: H5D__get_space_api_common
*
* Purpose: This is the common function for getting a dataset's dataspace
*
* Return: Success: ID for a copy of the dataspace.
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
static hid_t
H5D__get_space_api_common(hid_t dset_id, void **token_ptr, H5VL_object_t **_vol_obj_ptr)
{
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
if (NULL == (*vol_obj_ptr = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_SPACE;
vol_cb_args.args.get_space.space_id = H5I_INVALID_HID;
/* Get the dataspace */
if (H5VL_dataset_get(*vol_obj_ptr, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, token_ptr) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to get dataspace")
/* Set return value */
ret_value = vol_cb_args.args.get_space.space_id;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__get_space_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dget_space
*
* Purpose: Returns a copy of the file dataspace for a dataset.
*
* Return: Success: ID for a copy of the dataspace. The data
* space should be released by calling
* H5Sclose().
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dget_space(hid_t dset_id)
{
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "i", dset_id);
/* Get the dataset's dataspace synchronously */
if ((ret_value = H5D__get_space_api_common(dset_id, NULL, NULL)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to synchronously get dataspace")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_space() */
/*-------------------------------------------------------------------------
* Function: H5Dget_space_async
*
* Purpose: Asynchronous version of H5Dget_space
*
* Return: Success: ID for a copy of the dataspace. The data
* space should be released by calling
* H5Sclose().
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dget_space_async(const char *app_file, const char *app_func, unsigned app_line, hid_t dset_id, hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Object for loc_id */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE5("i", "*s*sIuii", app_file, app_func, app_line, dset_id, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Get the dataset's dataspace asynchronously */
if ((ret_value = H5D__get_space_api_common(dset_id, token_ptr, &vol_obj)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to asynchronously get dataspace")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE5(__func__, "*s*sIuii", app_file, app_func, app_line, dset_id, es_id)) < 0) {
/* clang-format on */
if (H5I_dec_app_ref(ret_value) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, H5I_INVALID_HID,
"can't decrement count on dataspace ID")
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, H5I_INVALID_HID, "can't insert token into event set")
} /* end if */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_space_async() */
/*-------------------------------------------------------------------------
* Function: H5Dget_space_status
*
* Purpose: Returns the status of dataspace allocation.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation /*out*/)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "ix", dset_id, allocation);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_SPACE_STATUS;
vol_cb_args.args.get_space_status.status = allocation;
/* Get dataspace status */
if (H5VL_dataset_get(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get space status")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dget_space_status() */
/*-------------------------------------------------------------------------
* Function: H5Dget_type
*
* Purpose: Returns a copy of the file datatype for a dataset.
*
* Return: Success: ID for a copy of the datatype. The data
* type should be released by calling
* H5Tclose().
*
* Failure: H5I_INVALID_HID
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dget_type(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_TYPE;
vol_cb_args.args.get_type.type_id = H5I_INVALID_HID;
/* Get the datatype */
if (H5VL_dataset_get(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to get datatype")
/* Set return value */
ret_value = vol_cb_args.args.get_type.type_id;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_type() */
/*-------------------------------------------------------------------------
* Function: H5Dget_create_plist
*
* Purpose: Returns a copy of the dataset creation property list.
*
* Return: Success: ID for a copy of the dataset creation
* property list. The template should be
* released by calling H5P_close().
*
* Failure: H5I_INVALID_HID
*
* Programmer: Robb Matzke
* Tuesday, February 3, 1998
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dget_create_plist(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_DCPL;
vol_cb_args.args.get_dcpl.dcpl_id = H5I_INVALID_HID;
/* Get the dataset creation property list */
if (H5VL_dataset_get(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to get dataset creation properties")
/* Set return value */
ret_value = vol_cb_args.args.get_dcpl.dcpl_id;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_create_plist() */
/*-------------------------------------------------------------------------
* Function: H5Dget_access_plist
*
* Purpose: Returns a copy of the dataset access property list.
*
* Description: H5Dget_access_plist returns the dataset access property
* list identifier of the specified dataset.
*
* The chunk cache parameters in the returned property lists will be
* those used by the dataset. If the properties in the file access
* property list were used to determine the dataset’s chunk cache
* configuration, then those properties will be present in the
* returned dataset access property list. If the dataset does not
* use a chunked layout, then the chunk cache properties will be set
* to the default. The chunk cache properties in the returned list
* are considered to be “set”, and any use of this list will override
* the corresponding properties in the file’s file access property
* list.
*
* All link access properties in the returned list will be set to the
* default values.
*
* Return: Success: ID for a copy of the dataset access
* property list. The template should be
* released by calling H5Pclose().
*
* Failure: H5I_INVALID_HID
*
* Programmer: Neil Fortner
* Wednesday, October 29, 2008
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dget_access_plist(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
hid_t ret_value = H5I_INVALID_HID; /* Return value */
FUNC_ENTER_API(H5I_INVALID_HID)
H5TRACE1("i", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, H5I_INVALID_HID, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_DAPL;
vol_cb_args.args.get_dapl.dapl_id = H5I_INVALID_HID;
/* Get the dataset access property list */
if (H5VL_dataset_get(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, H5I_INVALID_HID, "unable to get dataset access properties")
/* Set return value */
ret_value = vol_cb_args.args.get_dapl.dapl_id;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_access_plist() */
/*-------------------------------------------------------------------------
* Function: H5Dget_storage_size
*
* Purpose: Returns the amount of storage that is required for the
* dataset. For chunked datasets this is the number of allocated
* chunks times the chunk size.
*
* Return: Success: The amount of storage space allocated for the
* dataset, not counting meta data. The return
* value may be zero if no data has been stored.
*
* Failure: Zero
*
*-------------------------------------------------------------------------
*/
hsize_t
H5Dget_storage_size(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_get_args_t vol_cb_args; /* Arguments to VOL callback */
hsize_t storage_size = 0; /* Storage size of dataset */
hsize_t ret_value = 0; /* Return value */
FUNC_ENTER_API(0)
H5TRACE1("h", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "invalid dataset identifier")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_GET_STORAGE_SIZE;
vol_cb_args.args.get_storage_size.storage_size = &storage_size;
/* Get the storage size */
if (H5VL_dataset_get(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, 0, "unable to get storage size")
/* Set return value */
ret_value = storage_size;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_storage_size() */
/*-------------------------------------------------------------------------
* Function: H5Dget_offset
*
* Purpose: Returns the address of dataset in file.
*
* Return: Success: The address of dataset
*
* Failure: HADDR_UNDEF (can also be a valid return value!)
*
*-------------------------------------------------------------------------
*/
haddr_t
H5Dget_offset(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
haddr_t dset_offset = HADDR_UNDEF; /* Dataset's offset */
haddr_t ret_value = HADDR_UNDEF; /* Return value */
FUNC_ENTER_API(HADDR_UNDEF)
H5TRACE1("a", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, HADDR_UNDEF, "invalid dataset identifier")
/* Set up VOL callback arguments */
dset_opt_args.get_offset.offset = &dset_offset;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_OFFSET;
vol_cb_args.args = &dset_opt_args;
/* Get the offset */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, HADDR_UNDEF, "unable to get offset")
/* Set return value */
ret_value = dset_offset;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_offset() */
/*-------------------------------------------------------------------------
* Function: H5D__read_api_common
*
* Purpose: Common helper routine for sync/async dataset read operations.
*
* Return: SUCCEED/FAIL
*
*-------------------------------------------------------------------------
*/
static herr_t
H5D__read_api_common(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id,
void *buf, void **token_ptr, H5VL_object_t **_vol_obj_ptr)
{
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check arguments */
if (mem_space_id < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid memory dataspace ID")
if (file_space_id < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file dataspace ID")
/* Get dataset pointer */
if (NULL == (*vol_obj_ptr = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID")
/* Get the default dataset transfer property list if the user didn't provide one */
if (H5P_DEFAULT == dxpl_id)
dxpl_id = H5P_DATASET_XFER_DEFAULT;
else if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms")
/* Read the data */
if (H5VL_dataset_read(*vol_obj_ptr, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, token_ptr) <
0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__read_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dread
*
* Purpose: Reads (part of) a DSET from the file into application
* memory BUF. The part of the dataset to read is defined with
* MEM_SPACE_ID and FILE_SPACE_ID. The data points are
* converted from their file type to the MEM_TYPE_ID specified.
* Additional miscellaneous data transfer properties can be
* passed to this function with the PLIST_ID argument.
*
* The FILE_SPACE_ID can be the constant H5S_ALL which indicates
* that the entire file dataspace is to be referenced.
*
* The MEM_SPACE_ID can be the constant H5S_ALL in which case
* the memory dataspace is the same as the file dataspace
* defined when the dataset was created. The MEM_SPACE_ID can
* also be the constant H5S_BLOCK, which indicates that the
* buffer provided is a single contiguous block of memory, with
* the same # of elements as specified in the FILE_SPACE_ID
* selection.
*
* The number of elements in the memory dataspace must match
* the number of elements in the file dataspace.
*
* The PLIST_ID can be the constant H5P_DEFAULT in which
* case the default data transfer properties are used.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id,
void *buf /*out*/)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE6("e", "iiiiix", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf);
/* Read the data */
if (H5D__read_api_common(dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, NULL, NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't synchronously read data")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dread() */
/*-------------------------------------------------------------------------
* Function: H5Dread_async
*
* Purpose: Asynchronously read dataset elements.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Houjun Tang
* Oct 15, 2019
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dread_async(const char *app_file, const char *app_func, unsigned app_line, hid_t dset_id, hid_t mem_type_id,
hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, void *buf /*out*/, hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Dataset VOL object */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE10("e", "*s*sIuiiiiixi", app_file, app_func, app_line, dset_id, mem_type_id, mem_space_id,
file_space_id, dxpl_id, buf, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Read the data */
if (H5D__read_api_common(dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, token_ptr,
&vol_obj) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't asynchronously read data")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE10(__func__, "*s*sIuiiiiixi", app_file, app_func, app_line, dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, es_id)) < 0)
/* clang-format on */
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "can't insert token into event set")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dread_async() */
/*-------------------------------------------------------------------------
* Function: H5Dread_chunk
*
* Purpose: Reads an entire chunk from the file directly.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Matthew Strong (GE Healthcare)
* 14 February 2016
*
*---------------------------------------------------------------------------
*/
herr_t
H5Dread_chunk(hid_t dset_id, hid_t dxpl_id, const hsize_t *offset, uint32_t *filters, void *buf /*out*/)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "ii*h*Iux", dset_id, dxpl_id, offset, filters, buf);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID")
if (!buf)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buf cannot be NULL")
if (!offset)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "offset cannot be NULL")
if (!filters)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "filters cannot be NULL")
/* Get the default dataset transfer property list if the user didn't provide one */
if (H5P_DEFAULT == dxpl_id)
dxpl_id = H5P_DATASET_XFER_DEFAULT;
else if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dxpl_id is not a dataset transfer property list ID")
/* Set up VOL callback arguments */
dset_opt_args.chunk_read.offset = offset;
dset_opt_args.chunk_read.filters = 0;
dset_opt_args.chunk_read.buf = buf;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_CHUNK_READ;
vol_cb_args.args = &dset_opt_args;
/* Read the raw chunk */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, dxpl_id, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read unprocessed chunk data")
/* Set return value */
*filters = dset_opt_args.chunk_read.filters;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dread_chunk() */
/*-------------------------------------------------------------------------
* Function: H5D__write_api_common
*
* Purpose: Common helper routine for sync/async dataset write operations.
*
* Return: SUCCEED/FAIL
*
*-------------------------------------------------------------------------
*/
static herr_t
H5D__write_api_common(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id,
hid_t dxpl_id, const void *buf, void **token_ptr, H5VL_object_t **_vol_obj_ptr)
{
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check arguments */
if (mem_space_id < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid memory dataspace ID")
if (file_space_id < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file dataspace ID")
/* Get dataset pointer */
if (NULL == (*vol_obj_ptr = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id is not a dataset ID")
/* Get the default dataset transfer property list if the user didn't provide one */
if (H5P_DEFAULT == dxpl_id)
dxpl_id = H5P_DATASET_XFER_DEFAULT;
else if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms")
/* Write the data */
if (H5VL_dataset_write(*vol_obj_ptr, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, token_ptr) <
0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__write_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dwrite
*
* Purpose: Writes (part of) a DSET from application memory BUF to the
* file. The part of the dataset to write is defined with the
* MEM_SPACE_ID and FILE_SPACE_ID arguments. The data points
* are converted from their current type (MEM_TYPE_ID) to their
* file datatype. Additional miscellaneous data transfer
* properties can be passed to this function with the
* PLIST_ID argument.
*
* The FILE_SPACE_ID can be the constant H5S_ALL which indicates
* that the entire file dataspace is to be referenced.
*
* The MEM_SPACE_ID can be the constant H5S_ALL in which case
* the memory dataspace is the same as the file dataspace
* defined when the dataset was created. The MEM_SPACE_ID can
* also be the constant H5S_BLOCK, which indicates that the
* buffer provided is a single contiguous block of memory, with
* the same # of elements as specified in the FILE_SPACE_ID
* selection.
*
* The number of elements in the memory dataspace must match
* the number of elements in the file dataspace.
*
* The PLIST_ID can be the constant H5P_DEFAULT in which
* case the default data transfer properties are used.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id,
const void *buf)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE6("e", "iiiii*x", dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf);
/* Write the data */
if (H5D__write_api_common(dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, NULL, NULL) <
0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't synchronously write data")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dwrite() */
/*-------------------------------------------------------------------------
* Function: H5Dwrite_async
*
* Purpose: For asynchronous VOL with request token
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Houjun Tang
* Oct 15, 2019
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dwrite_async(const char *app_file, const char *app_func, unsigned app_line, hid_t dset_id,
hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t dxpl_id, const void *buf,
hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Dataset VOL object */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE10("e", "*s*sIuiiiii*xi", app_file, app_func, app_line, dset_id, mem_type_id, mem_space_id,
file_space_id, dxpl_id, buf, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Write the data */
if (H5D__write_api_common(dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, token_ptr,
&vol_obj) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't asynchronously write data")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE10(__func__, "*s*sIuiiiii*xi", app_file, app_func, app_line, dset_id, mem_type_id, mem_space_id, file_space_id, dxpl_id, buf, es_id)) < 0)
/* clang-format on */
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "can't insert token into event set")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dwrite_async() */
/*-------------------------------------------------------------------------
* Function: H5Dwrite_chunk
*
* Purpose: Writes an entire chunk to the file directly.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Raymond Lu
* 30 July 2012
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dwrite_chunk(hid_t dset_id, hid_t dxpl_id, uint32_t filters, const hsize_t *offset, size_t data_size,
const void *buf)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
uint32_t data_size_32; /* Chunk data size (limited to 32-bits currently) */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE6("e", "iiIu*hz*x", dset_id, dxpl_id, filters, offset, data_size, buf);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset ID")
if (!buf)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buf cannot be NULL")
if (!offset)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "offset cannot be NULL")
if (0 == data_size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "data_size cannot be zero")
/* Make sure data size is less than 4 GiB */
data_size_32 = (uint32_t)data_size;
if (data_size != (size_t)data_size_32)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid data_size - chunks cannot be > 4 GiB")
/* Get the default dataset transfer property list if the user didn't provide one */
if (H5P_DEFAULT == dxpl_id)
dxpl_id = H5P_DATASET_XFER_DEFAULT;
else if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dxpl_id is not a dataset transfer property list ID")
/* Set up VOL callback arguments */
dset_opt_args.chunk_write.offset = offset;
dset_opt_args.chunk_write.filters = filters;
dset_opt_args.chunk_write.size = data_size_32;
dset_opt_args.chunk_write.buf = buf;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_CHUNK_WRITE;
vol_cb_args.args = &dset_opt_args;
/* Write chunk */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, dxpl_id, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write unprocessed chunk data")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dwrite_chunk() */
/*-------------------------------------------------------------------------
* Function: H5Dscatter
*
* Purpose: Scatters data provided by the callback op to the
* destination buffer dst_buf, where the dimensions of
* dst_buf and the selection to be scattered to are specified
* by the dataspace dst_space_id. The type of the data to be
* scattered is specified by type_id.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Neil Fortner
* 14 Jan 2013
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf /*out*/)
{
H5T_t *type; /* Datatype */
H5S_t *dst_space; /* Dataspace */
H5S_sel_iter_t *iter = NULL; /* Selection iteration info*/
hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */
const void *src_buf = NULL; /* Source (contiguous) data buffer */
size_t src_buf_nbytes = 0; /* Size of src_buf */
size_t type_size; /* Datatype element size */
hssize_t nelmts; /* Number of remaining elements in selection */
size_t nelmts_scatter = 0; /* Number of elements to scatter to dst_buf */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "DS*xiix", op, op_data, type_id, dst_space_id, dst_buf);
/* Check args */
if (op == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid callback function pointer")
if (NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
if (NULL == (dst_space = (H5S_t *)H5I_object_verify(dst_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
if (dst_buf == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no destination buffer provided")
/* Get datatype element size */
if (0 == (type_size = H5T_GET_SIZE(type)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get datatype size")
/* Get number of elements in dataspace */
if ((nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(dst_space)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "unable to get number of elements in selection")
/* Allocate the selection iterator */
if (NULL == (iter = H5FL_MALLOC(H5S_sel_iter_t)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate selection iterator")
/* Initialize selection iterator */
if (H5S_select_iter_init(iter, dst_space, type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize selection iterator information")
iter_init = TRUE;
/* Loop until all data has been scattered */
while (nelmts > 0) {
/* Make callback to retrieve data */
if (op(&src_buf, &src_buf_nbytes, op_data) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CALLBACK, FAIL, "callback operator returned failure")
/* Calculate number of elements */
nelmts_scatter = src_buf_nbytes / type_size;
/* Check callback results */
if (!src_buf)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "callback did not return a buffer")
if (src_buf_nbytes == 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "callback returned a buffer size of 0")
if (src_buf_nbytes % type_size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "buffer size is not a multiple of datatype size")
if (nelmts_scatter > (size_t)nelmts)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "callback returned more elements than in selection")
/* Scatter data */
if (H5D__scatter_mem(src_buf, iter, nelmts_scatter, dst_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "scatter failed")
nelmts -= (hssize_t)nelmts_scatter;
} /* end while */
done:
/* Release selection iterator */
if (iter_init && H5S_SELECT_ITER_RELEASE(iter) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't release selection iterator")
if (iter)
iter = H5FL_FREE(H5S_sel_iter_t, iter);
FUNC_LEAVE_API(ret_value)
} /* H5Dscatter() */
/*-------------------------------------------------------------------------
* Function: H5Dgather
*
* Purpose: Gathers data provided from the source buffer src_buf to
* contiguous buffer dst_buf, then calls the callback op.
* The dimensions of src_buf and the selection to be gathered
* are specified by the dataspace src_space_id. The type of
* the data to be gathered is specified by type_id.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Neil Fortner
* 16 Jan 2013
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id, size_t dst_buf_size, void *dst_buf /*out*/,
H5D_gather_func_t op, void *op_data)
{
H5T_t *type; /* Datatype */
H5S_t *src_space; /* Dataspace */
H5S_sel_iter_t *iter = NULL; /* Selection iteration info*/
hbool_t iter_init = FALSE; /* Selection iteration info has been initialized */
size_t type_size; /* Datatype element size */
hssize_t nelmts; /* Number of remaining elements in selection */
size_t dst_buf_nelmts; /* Number of elements that can fit in dst_buf */
size_t nelmts_gathered; /* Number of elements gathered from src_buf */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE7("e", "i*xizxDg*x", src_space_id, src_buf, type_id, dst_buf_size, dst_buf, op, op_data);
/* Check args */
if (NULL == (src_space = (H5S_t *)H5I_object_verify(src_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace")
if (src_buf == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no source buffer provided")
if (NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
if (dst_buf_size == 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "destination buffer size is 0")
if (dst_buf == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no destination buffer provided")
/* Get datatype element size */
if (0 == (type_size = H5T_GET_SIZE(type)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get datatype size")
/* Get number of elements in dst_buf_size */
dst_buf_nelmts = dst_buf_size / type_size;
if (dst_buf_nelmts == 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"destination buffer is not large enough to hold one element")
/* Get number of elements in dataspace */
if ((nelmts = (hssize_t)H5S_GET_SELECT_NPOINTS(src_space)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOUNT, FAIL, "unable to get number of elements in selection")
/* If dst_buf is not large enough to hold all the elements, make sure there
* is a callback */
if (((size_t)nelmts > dst_buf_nelmts) && (op == NULL))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no callback supplied and destination buffer too small")
/* Allocate the selection iterator */
if (NULL == (iter = H5FL_MALLOC(H5S_sel_iter_t)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate selection iterator")
/* Initialize selection iterator */
if (H5S_select_iter_init(iter, src_space, type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to initialize selection iterator information")
iter_init = TRUE;
/* Loop until all data has been scattered */
while (nelmts > 0) {
/* Gather data */
if (0 ==
(nelmts_gathered = H5D__gather_mem(src_buf, iter, MIN(dst_buf_nelmts, (size_t)nelmts), dst_buf)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "gather failed")
HDassert(nelmts_gathered == MIN(dst_buf_nelmts, (size_t)nelmts));
/* Make callback to process dst_buf */
if (op && op(dst_buf, nelmts_gathered * type_size, op_data) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CALLBACK, FAIL, "callback operator returned failure")
nelmts -= (hssize_t)nelmts_gathered;
HDassert(op || (nelmts == 0));
} /* end while */
done:
/* Release selection iterator */
if (iter_init && H5S_SELECT_ITER_RELEASE(iter) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't release selection iterator")
if (iter)
iter = H5FL_FREE(H5S_sel_iter_t, iter);
FUNC_LEAVE_API(ret_value)
} /* H5Dgather() */
/*--------------------------------------------------------------------------
NAME
H5Dfill
PURPOSE
Fill a selection in memory with a value
USAGE
herr_t H5Dfill(fill, fill_type, space, buf, buf_type)
const void *fill; IN: Pointer to fill value to use
hid_t fill_type_id; IN: Datatype of the fill value
void *buf; IN/OUT: Memory buffer to fill selection within
hid_t buf_type_id; IN: Datatype of the elements in buffer
hid_t space_id; IN: Dataspace describing memory buffer &
containing selection to use.
RETURNS
Non-negative on success/Negative on failure.
DESCRIPTION
Use the selection in the dataspace to fill elements in a memory buffer.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
If "fill" parameter is NULL, use all zeros as fill value
EXAMPLES
REVISION LOG
--------------------------------------------------------------------------*/
herr_t
H5Dfill(const void *fill, hid_t fill_type_id, void *buf, hid_t buf_type_id, hid_t space_id)
{
H5S_t *space; /* Dataspace */
H5T_t *fill_type; /* Fill-value datatype */
H5T_t *buf_type; /* Buffer datatype */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "*xi*xii", fill, fill_type_id, buf, buf_type_id, space_id);
/* Check args */
if (buf == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid buffer")
if (NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "not a dataspace")
if (NULL == (fill_type = (H5T_t *)H5I_object_verify(fill_type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "not a datatype")
if (NULL == (buf_type = (H5T_t *)H5I_object_verify(buf_type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, 0, "not a datatype")
/* Fill the selection in the memory buffer */
if (H5D__fill(fill, fill_type, buf, buf_type, space) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dfill() */
/*-------------------------------------------------------------------------
* Function: H5Diterate
*
* Purpose: This routine iterates over all the elements selected in a memory
* buffer. The callback function is called once for each element selected
* in the dataspace. The selection in the dataspace is modified so
* that any elements already iterated over are removed from the selection
* if the iteration is interrupted (by the H5D_operator_t function
* returning non-zero) in the "middle" of the iteration and may be
* re-started by the user where it left off.
*
* NOTE: Until "subtracting" elements from a selection is implemented,
* the selection is not modified.
*
* Parameters:
* void *buf; IN/OUT: Pointer to the buffer in memory containing
* the elements to iterate over.
* hid_t type_id; IN: Datatype ID for the elements stored in BUF.
* hid_t space_id; IN: Dataspace ID for BUF, also contains the
* selection to iterate over.
* H5D_operator_t op; IN: Function pointer to the routine to be
* called for each element in BUF iterated over.
* void *operator_data; IN/OUT: Pointer to any user-defined data
* associated with the operation.
*
* Operation information:
* H5D_operator_t is defined as:
* typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id,
* unsigned ndim, const hsize_t *point, void *operator_data);
*
* H5D_operator_t parameters:
* void *elem; IN/OUT: Pointer to the element in memory containing
* the current point.
* hid_t type_id; IN: Datatype ID for the elements stored in ELEM.
* unsigned ndim; IN: Number of dimensions for POINT array
* const hsize_t *point; IN: Array containing the location of the element
* within the original dataspace.
* void *operator_data; IN/OUT: Pointer to any user-defined data
* associated with the operation.
*
* The return values from an operator are:
* Zero causes the iterator to continue, returning zero when all
* elements have been processed.
* Positive causes the iterator to immediately return that positive
* value, indicating short-circuit success. The iterator can be
* restarted at the next element.
* Negative causes the iterator to immediately return that value,
* indicating failure. The iterator can be restarted at the next
* element.
*
* Return: Returns the return value of the last operator if it was non-zero,
* or zero if all elements were processed. Otherwise returns a
* negative value.
*
* Programmer: Quincey Koziol
* Friday, June 11, 1999
*
*-------------------------------------------------------------------------
*/
herr_t
H5Diterate(void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data)
{
H5T_t *type; /* Datatype */
H5S_t *space; /* Dataspace for iteration */
H5S_sel_iter_op_t dset_op; /* Operator for iteration */
herr_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "*xiiDO*x", buf, type_id, space_id, op, operator_data);
/* Check args */
if (NULL == op)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid operator")
if (NULL == buf)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid buffer")
if (H5I_DATATYPE != H5I_get_type(type_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid datatype")
if (NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an valid base datatype")
if (NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataspace")
if (!(H5S_has_extent(space)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dataspace does not have extent set")
dset_op.op_type = H5S_SEL_ITER_OP_APP;
dset_op.u.app_op.op = op;
dset_op.u.app_op.type_id = type_id;
ret_value = H5S_select_iterate(buf, type, space, &dset_op, operator_data);
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Diterate() */
/*-------------------------------------------------------------------------
* Function: H5Dvlen_get_buf_size
*
* Purpose: This routine checks the number of bytes required to store the VL
* data from the dataset, using the space_id for the selection in the
* dataset on disk and the type_id for the memory representation of the
* VL data, in memory. The *size value is modified according to how many
* bytes are required to store the VL data in memory.
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, August 11, 1999
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size /*out*/)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
uint64_t supported; /* Whether 'get vlen buf size' operation is supported by VOL connector */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE4("e", "iiix", dataset_id, type_id, space_id, size);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object(dataset_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
if (H5I_DATATYPE != H5I_get_type(type_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid datatype identifier")
if (H5I_DATASPACE != H5I_get_type(space_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataspace identifier")
if (size == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid 'size' pointer")
/* Check if the 'get_vlen_buf_size' callback is supported */
supported = 0;
if (H5VL_introspect_opt_query(vol_obj, H5VL_SUBCLS_DATASET, H5VL_NATIVE_DATASET_GET_VLEN_BUF_SIZE,
&supported) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't check for 'get vlen buf size' operation")
if (supported & H5VL_OPT_QUERY_SUPPORTED) {
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
/* Set up VOL callback arguments */
dset_opt_args.get_vlen_buf_size.type_id = type_id;
dset_opt_args.get_vlen_buf_size.space_id = space_id;
dset_opt_args.get_vlen_buf_size.size = size;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_VLEN_BUF_SIZE;
vol_cb_args.args = &dset_opt_args;
/* Make the 'get_vlen_buf_size' callback */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get vlen buf size")
} /* end if */
else {
/* Perform a generic operation that will work with all VOL connectors */
if (H5D__vlen_get_buf_size_gen(vol_obj, type_id, space_id, size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get vlen buf size")
} /* end else */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dvlen_get_buf_size() */
/*-------------------------------------------------------------------------
* Function: H5D__set_extent_api_common
*
* Purpose: This is the common function for changing a dataset's dimensions
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5D__set_extent_api_common(hid_t dset_id, const hsize_t size[], void **token_ptr,
H5VL_object_t **_vol_obj_ptr)
{
H5VL_object_t *tmp_vol_obj = NULL; /* Object for loc_id */
H5VL_object_t **vol_obj_ptr =
(_vol_obj_ptr ? _vol_obj_ptr : &tmp_vol_obj); /* Ptr to object ptr for loc_id */
H5VL_dataset_specific_args_t vol_cb_args; /* Arguments to VOL callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
if (NULL == (*vol_obj_ptr = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
if (!size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "size array cannot be NULL")
/* Set up collective metadata if appropriate */
if (H5CX_set_loc(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set collective metadata read info")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_SET_EXTENT;
vol_cb_args.args.set_extent.size = size;
/* Set the extent */
if (H5VL_dataset_specific(*vol_obj_ptr, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, token_ptr) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to set dataset extent")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__set_extent_api_common() */
/*-------------------------------------------------------------------------
* Function: H5Dset_extent
*
* Purpose: Modifies the dimensions of a dataset.
* Can change to a smaller dimension.
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dset_extent(hid_t dset_id, const hsize_t size[])
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*h", dset_id, size);
/* Change a datset's dimensions synchronously */
if ((ret_value = H5D__set_extent_api_common(dset_id, size, NULL, NULL)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to synchronously change a dataset's dimensions")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dset_extent() */
/*-------------------------------------------------------------------------
* Function: H5Dset_extent_async
*
* Purpose: Asynchronous version of H5Dset_extent
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dset_extent_async(const char *app_file, const char *app_func, unsigned app_line, hid_t dset_id,
const hsize_t size[], hid_t es_id)
{
H5VL_object_t *vol_obj = NULL; /* Object for loc_id */
void *token = NULL; /* Request token for async operation */
void **token_ptr = H5_REQUEST_NULL; /* Pointer to request token for async operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE6("e", "*s*sIui*hi", app_file, app_func, app_line, dset_id, size, es_id);
/* Set up request token pointer for asynchronous operation */
if (H5ES_NONE != es_id)
token_ptr = &token; /* Point at token for VOL connector to set up */
/* Change a datset's dimensions asynchronously */
if (H5D__set_extent_api_common(dset_id, size, token_ptr, &vol_obj) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "unable to asynchronously change a dataset's dimensions")
/* If a token was created, add the token to the event set */
if (NULL != token)
/* clang-format off */
if (H5ES_insert(es_id, vol_obj->connector, token,
H5ARG_TRACE6(__func__, "*s*sIui*hi", app_file, app_func, app_line, dset_id, size, es_id)) < 0)
/* clang-format on */
HGOTO_ERROR(H5E_DATASET, H5E_CANTINSERT, FAIL, "can't insert token into event set")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dset_extent_async() */
/*-------------------------------------------------------------------------
* Function: H5Dflush
*
* Purpose: Flushes all buffers associated with a dataset.
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dflush(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_specific_args_t vol_cb_args; /* Arguments to VOL callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id parameter is not a valid dataset identifier")
/* Set up collective metadata if appropriate */
if (H5CX_set_loc(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set collective metadata read info")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_FLUSH;
vol_cb_args.args.flush.dset_id = dset_id;
/* Flush dataset information cached in memory
* XXX: Note that we need to pass the ID to the VOL since the H5F_flush_cb_t
* callback needs it and that's in the public API.
*/
if (H5VL_dataset_specific(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTFLUSH, FAIL, "unable to flush dataset")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dflush */
/*-------------------------------------------------------------------------
* Function: H5Drefresh
*
* Purpose: Refreshes all buffers associated with a dataset.
*
* Return: Non-negative on success, negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5Drefresh(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Object for loc_id */
H5VL_dataset_specific_args_t vol_cb_args; /* Arguments to VOL callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id parameter is not a valid dataset identifier")
/* Set up collective metadata if appropriate */
if (H5CX_set_loc(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set collective metadata read info")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_DATASET_REFRESH;
vol_cb_args.args.refresh.dset_id = dset_id;
/* Refresh the dataset object */
if (H5VL_dataset_specific(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTLOAD, FAIL, "unable to refresh dataset")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Drefresh() */
/*-------------------------------------------------------------------------
* Function: H5Dformat_convert (Internal)
*
* Purpose: For chunked:
* Convert the chunk indexing type to version 1 B-tree if not
* For compact/contiguous:
* Downgrade layout version to 3 if greater than 3
* For virtual:
* No conversion
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Vailin Choi
* Feb 2015
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dformat_convert(hid_t dset_id)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", dset_id);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id parameter is not a valid dataset identifier")
/* Set up collective metadata if appropriate */
if (H5CX_set_loc(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTSET, FAIL, "can't set collective metadata read info")
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_NATIVE_DATASET_FORMAT_CONVERT;
vol_cb_args.args = NULL;
/* Convert the dataset */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_INTERNAL, FAIL, "can't convert dataset format")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dformat_convert */
/*-------------------------------------------------------------------------
* Function: H5Dget_chunk_index_type (Internal)
*
* Purpose: Retrieve a dataset's chunk indexing type
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Vailin Choi
* Feb 2015
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_chunk_index_type(hid_t dset_id, H5D_chunk_index_t *idx_type /*out*/)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "ix", dset_id, idx_type);
/* Check args */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id parameter is not a valid dataset identifier")
if (NULL == idx_type)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "idx_type parameter cannot be NULL")
/* Set up VOL callback arguments */
dset_opt_args.get_chunk_idx_type.idx_type = idx_type;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_CHUNK_INDEX_TYPE;
vol_cb_args.args = &dset_opt_args;
/* Get the chunk indexing type */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk index type")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Dget_chunk_index_type() */
/*-------------------------------------------------------------------------
* Function: H5Dget_chunk_storage_size
*
* Purpose: Returns the size of an allocated chunk.
*
* Intended for use with the H5D(O)read_chunk API call so
* the caller can construct an appropriate buffer.
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Matthew Strong (GE Healthcare)
* 20 October 2016
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_chunk_storage_size(hid_t dset_id, const hsize_t *offset, hsize_t *chunk_nbytes /*out*/)
{
H5VL_object_t *vol_obj; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE3("e", "i*hx", dset_id, offset, chunk_nbytes);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dset_id parameter is not a valid dataset identifier")
if (NULL == offset)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "offset parameter cannot be NULL")
if (NULL == chunk_nbytes)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "chunk_nbytes parameter cannot be NULL")
/* Set up VOL callback arguments */
dset_opt_args.get_chunk_storage_size.offset = offset;
dset_opt_args.get_chunk_storage_size.size = chunk_nbytes;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_CHUNK_STORAGE_SIZE;
vol_cb_args.args = &dset_opt_args;
/* Get the dataset creation property list */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get storage size of chunk")
done:
FUNC_LEAVE_API(ret_value);
} /* H5Dget_chunk_storage_size() */
/*-------------------------------------------------------------------------
* Function: H5Dget_num_chunks
*
* Purpose: Retrieves the number of chunks that have non-empty intersection
* with a specified selection.
*
* Note: Currently, this function only gets the number of all written
* chunks, regardless the dataspace.
*
* Parameters:
* hid_t dset_id; IN: Chunked dataset ID
* hid_t fspace_id; IN: File dataspace ID
* hsize_t *nchunks; OUT: Number of non-empty chunks
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Binh-Minh Ribler
* May 2019 (HDFFV-10677)
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_num_chunks(hid_t dset_id, hid_t fspace_id, hsize_t *nchunks /*out*/)
{
H5VL_object_t *vol_obj = NULL; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE3("e", "iix", dset_id, fspace_id, nchunks);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
if (NULL == nchunks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument (null)")
/* Set up VOL callback arguments */
dset_opt_args.get_num_chunks.space_id = fspace_id;
dset_opt_args.get_num_chunks.nchunks = nchunks;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_NUM_CHUNKS;
vol_cb_args.args = &dset_opt_args;
/* Get the number of written chunks */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get number of chunks")
done:
FUNC_LEAVE_API(ret_value);
} /* H5Dget_num_chunks() */
/*-------------------------------------------------------------------------
* Function: H5Dget_chunk_info
*
* Purpose: Retrieves information about a chunk specified by its index.
*
* Parameters:
* hid_t dset_id; IN: Chunked dataset ID
* hid_t fspace_id; IN: File dataspace ID
* hsize_t index; IN: Index of written chunk
* hsize_t *offset OUT: Logical position of the chunk’s
* first element in the dataspace
* unsigned *filter_mask OUT: Mask for identifying the filters in use
* haddr_t *addr OUT: Address of the chunk
* hsize_t *size OUT: Size of the chunk
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Binh-Minh Ribler
* May 2019 (HDFFV-10677)
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_chunk_info(hid_t dset_id, hid_t fspace_id, hsize_t chk_index, hsize_t *offset /*out*/,
unsigned *filter_mask /*out*/, haddr_t *addr /*out*/, hsize_t *size /*out*/)
{
H5VL_object_t *vol_obj = NULL; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
hsize_t nchunks = 0; /* Number of chunks */
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE7("e", "iihxxxx", dset_id, fspace_id, chk_index, offset, filter_mask, addr, size);
/* Check arguments */
if (NULL == offset && NULL == filter_mask && NULL == addr && NULL == size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"invalid arguments, must have at least one non-null output argument")
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
/* Set up VOL callback arguments */
dset_opt_args.get_num_chunks.space_id = fspace_id;
dset_opt_args.get_num_chunks.nchunks = &nchunks;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_NUM_CHUNKS;
vol_cb_args.args = &dset_opt_args;
/* Get the number of written chunks to check range */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get number of chunks")
/* Check range for chunk index */
if (chk_index >= nchunks)
HGOTO_ERROR(H5E_DATASET, H5E_BADRANGE, FAIL, "chunk index is out of range")
/* Set up VOL callback arguments */
dset_opt_args.get_chunk_info_by_idx.space_id = fspace_id;
dset_opt_args.get_chunk_info_by_idx.chk_index = chk_index;
dset_opt_args.get_chunk_info_by_idx.offset = offset;
dset_opt_args.get_chunk_info_by_idx.filter_mask = filter_mask;
dset_opt_args.get_chunk_info_by_idx.addr = addr;
dset_opt_args.get_chunk_info_by_idx.size = size;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_IDX;
vol_cb_args.args = &dset_opt_args;
/* Call private function to get the chunk info given the chunk's index */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk info by index")
done:
FUNC_LEAVE_API(ret_value);
} /* H5Dget_chunk_info() */
/*-------------------------------------------------------------------------
* Function: H5Dget_chunk_info_by_coord
*
* Purpose: Retrieves information about a chunk specified by its logical
* coordinates.
*
* Parameters:
* hid_t dset_id; IN: Chunked dataset ID
* hsize_t *offset IN: Logical position of the chunk’s
* first element in the dataspace
* unsigned *filter_mask OUT: Mask for identifying the filters in use
* haddr_t *addr OUT: Address of the chunk
* hsize_t *size OUT: Size of the chunk
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Binh-Minh Ribler
* May 2019 (HDFFV-10677)
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dget_chunk_info_by_coord(hid_t dset_id, const hsize_t *offset, unsigned *filter_mask /*out*/,
haddr_t *addr /*out*/, hsize_t *size /*out*/)
{
H5VL_object_t *vol_obj = NULL; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "i*hxxx", dset_id, offset, filter_mask, addr, size);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
if (NULL == filter_mask && NULL == addr && NULL == size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"invalid arguments, must have at least one non-null output argument")
if (NULL == offset)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid argument (null)")
/* Set up VOL callback arguments */
dset_opt_args.get_chunk_info_by_coord.offset = offset;
dset_opt_args.get_chunk_info_by_coord.filter_mask = filter_mask;
dset_opt_args.get_chunk_info_by_coord.addr = addr;
dset_opt_args.get_chunk_info_by_coord.size = size;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_GET_CHUNK_INFO_BY_COORD;
vol_cb_args.args = &dset_opt_args;
/* Call private function to get the chunk info given the chunk's index */
if (H5VL_dataset_optional(vol_obj, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get chunk info by its logical coordinates")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dget_chunk_info_by_coord() */
/*-------------------------------------------------------------------------
* Function: H5Dchunk_iter
*
* Purpose: Iterates over all chunks in dataset with given callback and user data.
*
* Parameters:
* hid_t dset_id; IN: Chunked dataset ID
* hid_t dxpl_id; IN: Dataset transfer property list ID
* H5D_chunk_iter_op_t cb IN: User callback function, called for every chunk.
* void *op_data IN/OUT: Optional user data passed on to user callback.
*
* Callback information:
* H5D_chunk_iter_op_t is defined as:
*
* typedef int (*H5D_chunk_iter_op_t)(
* const hsize_t *offset,
* uint32_t filter_mask,
* haddr_t addr,
* uint32_t nbytes,
* void *op_data);
*
* H5D_chunk_iter_op_t parameters:
* hsize_t *offset; IN/OUT: Array of starting logical coordinates of chunk.
* uint32_t filter_mask; IN: Filter mask of chunk.
* haddr_t addr; IN: Offset in file of chunk data.
* uint32_t nbytes; IN: Size in number of bytes of chunk data in file.
* void *op_data; IN/OUT: Pointer to any user-defined data
* associated with the operation.
*
* The return values from an operator are:
* Zero (H5_ITER_CONT) causes the iterator to continue, returning zero when all
* elements have been processed.
* Positive (H5_ITER_STOP) causes the iterator to immediately return that positive
* value, indicating short-circuit success.
* Negative (H5_ITER_ERROR) causes the iterator to immediately return that value,
* indicating failure.
*
* Return: Non-negative on success, negative on failure
*
* Programmer: Gaute Hope
* August 2020
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dchunk_iter(hid_t dset_id, hid_t dxpl_id, H5D_chunk_iter_op_t op, void *op_data)
{
H5VL_object_t *vol_obj = NULL; /* Dataset for this operation */
H5VL_optional_args_t vol_cb_args; /* Arguments to VOL callback */
H5VL_native_dataset_optional_args_t dset_opt_args; /* Arguments for optional operation */
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE4("e", "iix*x", dset_id, dxpl_id, op, op_data);
/* Check arguments */
if (NULL == (vol_obj = (H5VL_object_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
if (NULL == op)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid callback to chunk iteration")
/* Get the default dataset transfer property list if the user didn't provide one */
if (H5P_DEFAULT == dxpl_id)
dxpl_id = H5P_DATASET_XFER_DEFAULT;
else if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "dxpl_id is not a dataset transfer property list ID")
/* Set up VOL callback arguments */
dset_opt_args.chunk_iter.op = op;
dset_opt_args.chunk_iter.op_data = op_data;
vol_cb_args.op_type = H5VL_NATIVE_DATASET_CHUNK_ITER;
vol_cb_args.args = &dset_opt_args;
/* Iterate over the chunks */
if ((ret_value = H5VL_dataset_optional(vol_obj, &vol_cb_args, dxpl_id, H5_REQUEST_NULL)) < 0)
HERROR(H5E_BADITER, H5E_BADITER, "error iterating over dataset chunks");
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Dchunk_iter() */
|