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|
/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
#ifdef RCSID
static char RcsId[] = "@(#)$Revision$";
#endif
/* $Id$ */
#include <H5private.h> /* Generic Functions */
#include <H5Aprivate.h> /* Atoms */
#include <H5ACprivate.h> /* Cache */
#include <H5Cprivate.h> /* Templates */
#include <H5Dprivate.h> /* Dataset functions */
#include <H5Eprivate.h> /* Error handling */
#include <H5Gprivate.h> /* Group headers */
#include <H5Mprivate.h> /* Meta data */
#include <H5MFprivate.h> /* File space allocation header */
#include <H5MMprivate.h> /* Memory management */
#include <H5Mprivate.h> /* Meta-Object API */
#include <H5Oprivate.h> /* Object headers */
#define PABLO_MASK H5D_mask
/*
* A dataset is the following struct.
*/
struct H5D_t {
H5F_t *file; /*file store for this object */
H5G_entry_t *ent; /*cached object header stuff */
H5T_t *type; /*datatype of this dataset */
H5P_t *space; /*dataspace of this dataset */
H5D_create_t create_parms; /*creation parameters */
union {
H5O_cstore_t cstore; /*contiguous storage info */
H5O_istore_t istore; /*chunked storage info */
} storage;
};
/* Default dataset creation template */
const H5D_create_t H5D_create_dflt = {
H5D_CONTIGUOUS, /* Layout */
1, /* Chunk dimensions */
{1, 1, 1, 1, 1, 1, 1, 1, /* Chunk size. These default values....*/
1, 1, 1, 1, 1, 1, 1, 1, /*...are quite useless. Larger chunks..*/
1, 1, 1, 1, 1, 1, 1, 1, /*...produces fewer, but larger I/O.....*/
1, 1, 1, 1, 1, 1, 1, 1}, /*...requests. */
};
/* Default dataset transfer template */
const H5D_xfer_t H5D_xfer_dflt = {
0, /* Place holder - remove this later */
};
/* Interface initialization? */
static hbool_t interface_initialize_g = FALSE;
#define INTERFACE_INIT H5D_init_interface
static herr_t H5D_init_interface(void);
static void H5D_term_interface (void);
/*--------------------------------------------------------------------------
NAME
H5D_init_interface -- Initialize interface-specific information
USAGE
herr_t H5D_init_interface()
RETURNS
SUCCEED/FAIL
DESCRIPTION
Initializes any interface-specific data or routines.
--------------------------------------------------------------------------*/
static herr_t
H5D_init_interface (void)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER (H5D_init_interface, FAIL);
/* Initialize the atom group for the dataset IDs */
if ((ret_value=H5Ainit_group (H5_DATASET, H5A_DATASETID_HASHSIZE,
H5D_RESERVED_ATOMS,
(herr_t (*)(void*))H5D_close))!=FAIL) {
ret_value = H5_add_exit (H5D_term_interface);
}
FUNC_LEAVE (ret_value);
}
/*--------------------------------------------------------------------------
NAME
H5D_term_interface
PURPOSE
Terminate various H5D objects
USAGE
void H5D_term_interface()
RETURNS
SUCCEED/FAIL
DESCRIPTION
Release the atom group and any other resources allocated.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
Can't report errors...
EXAMPLES
REVISION LOG
--------------------------------------------------------------------------*/
static void
H5D_term_interface (void)
{
H5Adestroy_group (H5_DATASET);
}
/*-------------------------------------------------------------------------
* Function: H5Dcreate
*
* Purpose: Creates a new dataset named NAME in file FILE_ID, opens the
* dataset for access, and associates with that dataset constant
* and initial persistent properties including the type of each
* datapoint as stored in the file (TYPE_ID), the size of the
* dataset (SPACE_ID), and other initial miscellaneous
* properties (CREATE_PARMS_ID).
*
* All arguments are copied into the dataset, so the caller is
* allowed to derive new types, data spaces, and creation
* parameters from the old ones and reuse them in calls to
* create other datasets.
*
* Return: Success: The object ID of the new dataset. At this
* point, the dataset is ready to receive its
* raw data. Attempting to read raw data from
* the dataset will probably return the fill
* value. The dataset should be closed when
* the caller is no longer interested in it.
*
* Failure: FAIL
*
* Errors:
* ARGS BADTYPE Not a data space.
* ARGS BADTYPE Not a dataset creation template.
* ARGS BADTYPE Not a file.
* ARGS BADTYPE Not a type.
* ARGS BADVALUE No name.
* DATASET CANTINIT Can't create dataset.
* DATASET CANTREGISTER Can't register dataset.
*
* Programmer: Robb Matzke
* Wednesday, December 3, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dcreate (hid_t file_id, const char *name, hid_t type_id, hid_t space_id,
hid_t create_parms_id)
{
H5F_t *f = NULL;
H5T_t *type = NULL;
H5P_t *space = NULL;
H5D_t *new_dset = NULL;
hid_t ret_value = FAIL;
const H5D_create_t *create_parms = NULL;
FUNC_ENTER (H5Dcreate, FAIL);
H5ECLEAR;
/* check arguments */
if (H5_FILE!=H5Aatom_group (file_id) ||
NULL==(f=H5Aatom_object (file_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
if (!name || !*name) {
HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "no name");
}
if (H5_DATATYPE!=H5Aatom_group (type_id) ||
NULL==(type=H5Aatom_object (type_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a type");
}
if (H5_DATASPACE!=H5Aatom_group (space_id) ||
NULL==(space=H5Aatom_object (space_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space");
}
if (create_parms_id>=0) {
if (H5C_DATASET_CREATE!=H5Cget_class (create_parms_id) ||
NULL==(create_parms=H5Aatom_object (create_parms_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL,
"not a dataset creation template");
}
} else {
create_parms = &H5D_create_dflt;
}
/* build and open the new dataset */
if (NULL==(new_dset=H5D_create (f, name, type, space, create_parms))) {
HRETURN_ERROR (H5E_DATASET, H5E_CANTINIT, FAIL, "can't create dataset");
}
/* Register the new datatype and get an ID for it */
if ((ret_value=H5Aregister_atom (H5_DATASET, new_dset))<0) {
H5D_close (new_dset);
HRETURN_ERROR (H5E_DATASET, H5E_CANTREGISTER, FAIL,
"can't register dataset");
}
FUNC_LEAVE (ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Dopen
*
* Purpose: Finds a dataset named NAME in file FILE_ID, opens it, and
* returns its ID. The dataset should be close when the caller
* is no longer interested in it.
*
* Return: Success: A new dataset ID
*
* Failure: FAIL
*
* Errors:
* ARGS BADTYPE Not a file.
* ARGS BADVALUE No name.
* DATASET CANTREGISTER Can't register dataset.
* DATASET NOTFOUND Dataset not found.
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5Dopen (hid_t file_id, const char *name)
{
H5F_t *file = NULL; /*file holding the dataset */
H5D_t *dataset = NULL; /*the dataset */
hid_t ret_value = FAIL;
FUNC_ENTER (H5Dopen, FAIL);
H5ECLEAR;
/* Check args */
if (H5_FILE!=H5Aatom_group (file_id) ||
NULL==(file=H5Aatom_object (file_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
if (!name || !*name) {
HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "no name");
}
/* Find the dataset */
if (NULL==(dataset=H5D_open (file, name))) {
HRETURN_ERROR (H5E_DATASET, H5E_NOTFOUND, FAIL, "dataset not found");
}
/* Create an atom for the dataset */
if ((ret_value=H5Aregister_atom (H5_DATASET, dataset))<0) {
H5D_close (dataset);
HRETURN_ERROR (H5E_DATASET, H5E_CANTREGISTER, FAIL,
"can't register dataset");
}
FUNC_LEAVE (ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Dclose
*
* Purpose: Closes access to a dataset (DATASET_ID) and releases
* resources used by it. It is illegal to subsequently use that
* same dataset ID in calls to other dataset functions.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Errors:
* ARGS BADTYPE Not a dataset.
* DATASET CANTINIT Can't free.
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dclose (hid_t dataset_id)
{
H5D_t *dataset = NULL; /* dataset object to release */
FUNC_ENTER (H5Dclose, FAIL);
H5ECLEAR;
/* Check args */
if (H5_DATASET!=H5Aatom_group (dataset_id) ||
NULL==(dataset=H5Aatom_object (dataset_id)) ||
NULL==dataset->file) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset");
}
/*
* Decrement the counter on the dataset. It will be freed if the count
* reaches zero.
*/
if (H5A_dec_ref (dataset_id)<0) {
HRETURN_ERROR (H5E_DATASET, H5E_CANTINIT, FAIL, "can't free");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Dread
*
* Purpose: Reads (part of) a DATASET from the file into application
* memory BUF. The part of the dataset to read is defined with
* SPACE_ID (if SPACE_ID is negative then we assume that the
* caller desires to read the entire dataset). The data points
* are converted from their file type to the TYPE_ID specified.
* Additional miscellaneous data transfer properties can be
* passed to this function with the XFER_PARMS_ID argument.
*
* The SPACE_ID can be the constant H5P_ALL in which case the
* destination (memory) data space is the same as the source
* (file) data space defined when the dataset was created.
*
* The XFER_PARMS_ID can be the constant H5C_DEFAULT in which
* case the default data transfer properties are used.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Errors:
* ARGS BADTYPE Not a data space.
* ARGS BADTYPE Not a data type.
* ARGS BADTYPE Not a dataset.
* ARGS BADTYPE Not xfer parms.
* ARGS BADVALUE No output buffer.
* DATASET READERROR Can't read data.
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dread (hid_t dataset_id, hid_t type_id, hid_t space_id,
hid_t xfer_parms_id, void *buf/*out*/)
{
H5D_t *dataset = NULL;
const H5T_t *type = NULL;
const H5P_t *space = NULL;
const H5D_xfer_t *xfer_parms = NULL;
FUNC_ENTER (H5Dread, FAIL);
H5ECLEAR;
/* check arguments */
if (H5_DATASET!=H5Aatom_group (dataset_id) ||
NULL==(dataset=H5Aatom_object (dataset_id)) ||
NULL==dataset->file) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset");
}
if (H5_DATATYPE!=H5Aatom_group (type_id) ||
NULL==(type=H5Aatom_object (type_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a data type");
}
if (H5P_ALL!=space_id) {
if (H5_DATASPACE!=H5Aatom_group (space_id) ||
NULL==(space=H5Aatom_object (space_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space");
}
}
if (H5C_DEFAULT==xfer_parms_id) {
xfer_parms = &H5D_xfer_dflt;
} else if (H5C_DATASET_XFER!=H5Cget_class (xfer_parms_id) ||
NULL==(xfer_parms=H5Aatom_object (xfer_parms_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms");
}
if (!buf) {
HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer");
}
/* read raw data */
if (H5D_read (dataset, type, space, xfer_parms, buf/*out*/)<0) {
HRETURN_ERROR (H5E_DATASET, H5E_READERROR, FAIL, "can't read data");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Dwrite
*
* Purpose: Writes (part of) a DATASET from application memory BUF to the
* file. The part of the dataset to write is defined with the
* SPACE_ID (if SPACE_ID is negative then we assume that the
* caller desires to write the entire dataset). The data points
* are converted from their current type (TYPE_ID) to their file
* data type. Additional miscellaneous data transfer properties
* can be passed to this function with the XFER_PARMS_ID
* argument.
*
* The SPACE_ID can be the constant H5P_ALL in which case the
* source (memory) data space is the same as the destination
* (file) memory space which was defined when the dataset was
* created.
*
* The XFER_PARMS_ID can be the constant H5C_DEFAULT in which
* case the default data transfer properties are used.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Errors:
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Dwrite (hid_t dataset_id, hid_t type_id, hid_t space_id,
hid_t xfer_parms_id, const void *buf)
{
H5D_t *dataset = NULL;
const H5T_t *type = NULL;
const H5P_t *space = NULL;
const H5D_xfer_t *xfer_parms = NULL;
FUNC_ENTER (H5Dwrite, FAIL);
H5ECLEAR;
/* check arguments */
if (H5_DATASET!=H5Aatom_group (dataset_id) ||
NULL==(dataset=H5Aatom_object (dataset_id)) ||
NULL==dataset->file) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset");
}
if (H5_DATATYPE!=H5Aatom_group (type_id) ||
NULL==(type=H5Aatom_object (type_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a data type");
}
if (H5P_ALL!=space_id) {
if (H5_DATASPACE!=H5Aatom_group (space_id) ||
NULL==(space=H5Aatom_object (space_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space");
}
}
if (H5C_DEFAULT==xfer_parms_id) {
xfer_parms = &H5D_xfer_dflt;
} else if (H5C_DATASET_XFER!=H5Cget_class (xfer_parms_id) ||
NULL==(xfer_parms=H5Aatom_object (xfer_parms_id))) {
HRETURN_ERROR (H5E_ARGS, H5E_BADTYPE, FAIL, "not xfer parms");
}
if (!buf) {
HRETURN_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer");
}
/* write raw data */
if (H5D_write (dataset, type, space, xfer_parms, buf)<0) {
HRETURN_ERROR (H5E_DATASET, H5E_READERROR, FAIL, "can't write data");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5D_find_name
*
* Purpose: This is a callback for H5Mfind_name(). It does the same
* thing as H5Dopen() except it takes an extra argument which
* isn't used.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Errors:
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5D_find_name (hid_t file_id, group_t UNUSED, const char *name)
{
return H5Dopen (file_id, name);
}
/*-------------------------------------------------------------------------
* Function: H5D_create
*
* Purpose: Creates a new dataset with name NAME in file F and associates
* with it a datatype TYPE for each element as stored in the
* file, dimensionality information or dataspace SPACE, and
* other miscellaneous properties CREATE_PARMS. All arguments
* are deep-copied before being associated with the new dataset,
* so the caller is free to subsequently modify them without
* affecting the dataset.
*
* Return: Success: Pointer to a new dataset
*
* Failure: NULL
*
* Errors:
* DATASET CANTINIT Can't update dataset header.
* DATASET CANTINIT Problem with the dataset name.
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
H5D_t *
H5D_create (H5F_t *f, const char *name, const H5T_t *type, const H5P_t *space,
const H5D_create_t *create_parms)
{
H5D_t *new_dset = NULL;
H5D_t *ret_value = NULL;
size_t nbytes;
intn ndims;
FUNC_ENTER (H5D_create, NULL);
/* check args */
assert (f);
assert (name && *name);
assert (type);
assert (space);
assert (create_parms);
/* Initialize the dataset object */
new_dset = H5MM_xcalloc (1, sizeof(H5D_t));
new_dset->file = f;
new_dset->type = H5T_copy (type);
new_dset->space = H5P_copy (space);
new_dset->create_parms = *create_parms;
/*
* Open (and create) a new file object and update the object header
* immediately with the new information so when others access the dataset
* they see the most current info. This `write through the dataset'
* policy is used throughout this package, and because the object header
* is cached it shouldn't cause any disk activity.
*/
if (NULL==(new_dset->ent = H5G_create (f, name, H5D_MINHDR_SIZE))) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"problem with the dataset name");
}
/* Update the type and space header messages */
if (H5O_modify (f, NO_ADDR, new_dset->ent, H5O_DTYPE, 0,
new_dset->type)<0 ||
H5P_modify (f, new_dset->ent, new_dset->space)<0) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"can't update type or space header messages");
}
/* Total raw data size */
nbytes = H5T_get_size (type) * H5P_get_npoints (space);
/* Initialize storage */
switch (new_dset->create_parms.layout) {
case H5D_CONTIGUOUS:
new_dset->storage.cstore.size = nbytes;
if (H5MF_alloc (f, H5MF_RAW, nbytes,
&(new_dset->storage.cstore.addr))<0) {
HGOTO_ERROR (H5E_DATASET, H5E_NOSPACE, NULL,
"can't allocate raw file storage");
}
if (H5O_modify (f, NO_ADDR, new_dset->ent, H5O_CSTORE, 0,
&(new_dset->storage.cstore))<0) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"can't update dataset object header");
}
break;
case H5D_CHUNKED:
/*
* The dimensionality of the chunk should match the dimensionality of
* the data space. We will add one more dimension here though, to
* describe the individual bytes of a data point. Therefore, there
* must be room in the template for one more dimension size.
*/
ndims = new_dset->create_parms.chunk_ndims;
if (ndims != H5P_get_ndims (space)) {
HGOTO_ERROR (H5E_DATASET, H5E_BADVALUE, NULL,
"dimensionality of chunks doesn't match the data space");
}
assert (ndims<NELMTS (new_dset->create_parms.chunk_size));
new_dset->create_parms.chunk_size[ndims] = H5T_get_size (type);
if (H5F_istore_create (f, &(new_dset->storage.istore), ndims+1,
new_dset->create_parms.chunk_size)<0) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"can't initialize chunked storage");
}
if (H5O_modify (f, NO_ADDR, new_dset->ent, H5O_ISTORE, 0,
&(new_dset->storage.istore))<0) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"can't update dataset object header");
}
break;
default:
assert ("not implemented yet" && 0);
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, NULL, "not implemented yet");
}
/* Success */
ret_value = new_dset;
done:
if (!ret_value && new_dset) {
if (new_dset->type) H5T_close (new_dset->type);
if (new_dset->space) H5P_close (new_dset->space);
if (new_dset->ent) H5G_close (f, new_dset->ent);
new_dset->file = NULL;
H5MM_xfree (new_dset);
}
FUNC_LEAVE (ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5D_open
*
* Purpose: Finds a dataset named NAME in file F and builds a descriptor
* for it, opening it for access.
*
* Return: Success: Pointer to a new dataset descriptor.
*
* Failure: NULL
*
* Errors:
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
H5D_t *
H5D_open (H5F_t *f, const char *name)
{
H5D_t *dataset = NULL; /*the dataset which was found */
H5D_t *ret_value = NULL; /*return value */
H5O_istore_t *istore = NULL;
intn i;
FUNC_ENTER (H5D_open, NULL);
/* check args */
assert (f);
assert (name && *name);
dataset = H5MM_xcalloc (1, sizeof(H5D_t));
dataset->file = f;
dataset->create_parms = H5D_create_dflt;
/* Open the dataset object */
if (NULL==(dataset->ent=H5G_open (f, name))) {
HGOTO_ERROR (H5E_DATASET, H5E_NOTFOUND, NULL, "not found");
}
/* Get the type and space */
if (NULL==(dataset->type = H5O_read (f, NO_ADDR, dataset->ent, H5O_DTYPE,
0, NULL)) ||
NULL==(dataset->space = H5P_read (f, dataset->ent))) {
HGOTO_ERROR (H5E_DATASET, H5E_CANTINIT, NULL,
"can't load type of space info from dataset header");
}
/*
* Get the raw data storage info. It's actually stored in two locations:
* the storage message of the dataset (dataset->storage) and certain
* values are copied to the dataset create template so the user can query
* them.
*/
if (H5O_read (dataset->file, NO_ADDR, dataset->ent, H5O_CSTORE, 0,
&(dataset->storage.cstore))) {
/* Contiguous storage */
dataset->create_parms.layout = H5D_CONTIGUOUS;
} else if (H5O_read (dataset->file, NO_ADDR, dataset->ent, H5O_ISTORE, 0,
&(dataset->storage.istore))) {
/*
* Chunked storage. The creation template's dimension is one less than
* the chunk dimension because the chunk includes a dimension for the
* individual bytes of the data type.
*/
istore = &(dataset->storage.istore);
dataset->create_parms.layout = H5D_CHUNKED;
dataset->create_parms.chunk_ndims = istore->ndims - 1;
assert (istore->ndims<=NELMTS (dataset->create_parms.chunk_size));
for (i=0; i<istore->ndims-1; i++) {
dataset->create_parms.chunk_size[i] = istore->alignment[i];
}
} else {
assert ("not implemented yet" && 0);
HGOTO_ERROR (H5E_DATASET, H5E_UNSUPPORTED, NULL, "not implemented yet");
}
/* Success */
ret_value = dataset;
done:
if (!ret_value && dataset) {
if (dataset->ent) H5G_close (f, dataset->ent);
if (dataset->type) H5T_close (dataset->type);
if (dataset->space) H5P_close (dataset->space);
dataset->file = NULL;
H5MM_xfree (dataset);
}
FUNC_LEAVE (ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5D_close
*
* Purpose: Insures that all data has been saved to the file, closes the
* dataset object header, and frees all resources used by the
* descriptor.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Errors:
* DATASET CANTINIT Couldn't free the type or space,
* but the dataset was freed anyway.
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5D_close (H5D_t *dataset)
{
hbool_t free_failed;
FUNC_ENTER (H5D_close, FAIL);
/* check args */
assert (dataset && dataset->file);
/* Close the dataset object */
H5G_close (dataset->file, dataset->ent);
dataset->ent = NULL;
/*
* Release dataset type and space - there isn't much we can do if one of
* these fails, so we just continue.
*/
free_failed = (H5T_close (dataset->type)<0 ||
H5P_close (dataset->space)<0);
/*
* Free memory. Before freeing the memory set the file pointer to NULL.
* We always check for a null file pointer in other H5D functions to be
* sure we're not accessing an already freed dataset (see the assert()
* above).
*/
dataset->file = NULL;
H5MM_xfree (dataset);
if (free_failed) {
HRETURN_ERROR (H5E_DATASET, H5E_CANTINIT, FAIL,
"couldn't free the type or space, but the dataset was "
"freed anyway.");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5D_read
*
* Purpose: Reads (part of) a DATASET into application memory BUF. The
* SPACE argument determines what part of the dataset to read
* (the whole thing is read if SPACE is null) and individual
* data points are translated from their file data type to the
* specified TYPE. The XFER_PARMS contains additional
* miscellaneous properties that control the data transfer.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5D_read (H5D_t *dataset, const H5T_t *type, const H5P_t *space,
const H5D_xfer_t *xfer_parms, void *buf/*out*/)
{
size_t nbytes;
size_t offset[H5O_ISTORE_NDIMS];
size_t size[H5O_ISTORE_NDIMS];
intn i;
FUNC_ENTER (H5D_read, FAIL);
/* check args */
assert (dataset && dataset->file);
assert (type);
assert (xfer_parms);
assert (buf);
if (H5D_CONTIGUOUS!=dataset->create_parms.layout) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"layout is not supported yet");
}
if (H5T_cmp (type, dataset->type)) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"type conversion not supported yet");
}
if (space && H5P_cmp (space, dataset->space)) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"space conversion not supported yet");
}
/* Compute the size of the request */
nbytes = H5T_get_size (dataset->type) * H5P_get_npoints (dataset->space);
switch (dataset->create_parms.layout) {
case H5D_CONTIGUOUS:
/*
* Read a block of contiguous data.
*/
if (H5F_block_read (dataset->file, &(dataset->storage.cstore.addr),
nbytes, buf)<0) {
HRETURN_ERROR (H5E_IO, H5E_READERROR, FAIL, "read failed");
}
break;
case H5D_CHUNKED:
/*
* Read one or more chunks from indexed storage.
*/
for (i=0; i<dataset->storage.istore.ndims; i++) offset[i] = 0;
H5P_get_dims (dataset->space, size);
size[dataset->storage.istore.ndims-1] = H5T_get_size (dataset->type);
if (H5F_istore_read (dataset->file, &(dataset->storage.istore),
offset, size, buf)<0) {
HRETURN_ERROR (H5E_IO, H5E_READERROR, FAIL, "read failed");
}
break;
default:
assert ("not implemented yet" && 0);
HRETURN_ERROR (H5E_INTERNAL, H5E_UNSUPPORTED, FAIL,
"not implemented yet");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5D_write
*
* Purpose: Writes (part of) a DATASET to a file from application memory
* BUF. The SPACE argument determines what part of the dataset
* to write (the whole thing is read if SPACE is null) and
* individual data points are translated from their memory data
* type (TYPE) to the file data type. The XFER_PARMS contains
* additional miscellaneous properties that control the data
* transfer.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Thursday, December 4, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5D_write (H5D_t *dataset, const H5T_t *type, const H5P_t *space,
const H5D_xfer_t *xfer_parms, const void *buf)
{
size_t nbytes;
size_t offset[H5O_ISTORE_NDIMS];
size_t size[H5O_ISTORE_NDIMS];
intn i;
FUNC_ENTER (H5D_write, FAIL);
/* check args */
assert (dataset && dataset->file);
assert (type);
assert (xfer_parms);
assert (buf);
if (H5D_CONTIGUOUS!=dataset->create_parms.layout) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"layout is not supported yet");
}
if (H5T_cmp (type, dataset->type)) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"type conversion not supported yet");
}
if (space && H5P_cmp (space, dataset->space)) {
HRETURN_ERROR (H5E_DATASET, H5E_UNSUPPORTED, FAIL,
"space conversion not supported yet");
}
/* Compute the size of the request */
nbytes = H5T_get_size (dataset->type) * H5P_get_npoints (dataset->space);
switch (dataset->create_parms.layout) {
case H5D_CONTIGUOUS:
/*
* Write a contiguous chunk of data.
*/
if (H5F_block_write (dataset->file, &(dataset->storage.cstore.addr),
nbytes, buf)<0) {
HRETURN_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "write failed");
}
break;
case H5D_CHUNKED:
/*
* Write one or more chunks to indexed storage.
*/
for (i=0; i<dataset->storage.istore.ndims; i++) offset[i] = 0;
H5P_get_dims (dataset->space, size);
size[dataset->storage.istore.ndims-1] = H5T_get_size (dataset->type);
if (H5F_istore_write (dataset->file, &(dataset->storage.istore),
offset, size, buf)<0) {
HRETURN_ERROR (H5E_IO, H5E_WRITEERROR, FAIL, "write failed");
}
break;
default:
assert ("not implemented yet" && 0);
HRETURN_ERROR (H5E_INTERNAL, H5E_UNSUPPORTED, FAIL,
"not implemented yet");
}
FUNC_LEAVE (SUCCEED);
}
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