1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Dfill.c
* Jun 19 2007
* Quincey Koziol
*
* Purpose: Fill value operations for datasets
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#include "H5Dmodule.h" /* This source code file is part of the H5D module */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
#include "H5Dpkg.h" /* Dataset functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5VMprivate.h" /* Vector and array functions */
#include "H5WBprivate.h" /* Wrapped Buffers */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static herr_t H5D__fill_release(H5D_fill_buf_info_t *fb_info);
/*********************/
/* Package Variables */
/*********************/
/* Declare extern the free list to manage blocks of type conversion data */
H5FL_BLK_EXTERN(type_conv);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Declare the free list to manage blocks of non-zero fill-value data */
H5FL_BLK_DEFINE_STATIC(non_zero_fill);
/* Declare the free list to manage blocks of zero fill-value data */
H5FL_BLK_DEFINE_STATIC(zero_fill);
/* Declare extern free list to manage the H5S_sel_iter_t struct */
H5FL_EXTERN(H5S_sel_iter_t);
/*--------------------------------------------------------------------------
NAME
H5D__fill
PURPOSE
Fill a selection in memory with a value (internal version)
USAGE
herr_t H5D__fill(fill, fill_type, buf, buf_type, space)
const void *fill; IN: Pointer to fill value to use
H5T_t *fill_type; IN: Datatype of the fill value
void *buf; IN/OUT: Memory buffer to fill selection within
H5T_t *buf_type; IN: Datatype of the elements in buffer
H5S_t *space; IN: Dataspace describing memory buffer &
containing selection to use.
RETURNS
Non-negative on success/Negative on failure.
DESCRIPTION
Use the selection in the dataspace to fill elements in a memory buffer.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
If "fill" parameter is NULL, use all zeros as fill value.
EXAMPLES
REVISION LOG
Raymond Lu - 20 March 2007
If there's VL type of data, the address of the data is copied multiple
times into the buffer, causing some trouble when the data is released.
Instead, make multiple copies of fill value first, then do conversion
on each element so that each of them has a copy of the VL data.
--------------------------------------------------------------------------*/
herr_t
H5D__fill(const void *fill, const H5T_t *fill_type, void *buf, const H5T_t *buf_type, const H5S_t *space)
{
H5S_sel_iter_t *mem_iter = NULL; /* Memory selection iteration info */
hbool_t mem_iter_init = FALSE; /* Whether the memory selection iterator has been initialized */
H5WB_t * elem_wb = NULL; /* Wrapped buffer for element data */
uint8_t elem_buf[H5T_ELEM_BUF_SIZE]; /* Buffer for element data */
H5WB_t * bkg_elem_wb = NULL; /* Wrapped buffer for background data */
uint8_t bkg_elem_buf[H5T_ELEM_BUF_SIZE]; /* Buffer for background data */
uint8_t * bkg_buf = NULL; /* Background conversion buffer */
uint8_t * tmp_buf = NULL; /* Temp conversion buffer */
hid_t src_id = -1, dst_id = -1; /* Temporary type IDs */
size_t dst_type_size; /* Size of destination type*/
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
HDassert(fill_type);
HDassert(buf);
HDassert(buf_type);
HDassert(space);
/* Make sure the dataspace has an extent set (or is NULL) */
if (!(H5S_has_extent(space)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "dataspace extent has not been set")
/* Get the memory datatype size */
dst_type_size = H5T_get_size(buf_type);
/* If there's no fill value, just use zeros */
if (fill == NULL) {
void *elem_ptr; /* Pointer to element to use for fill value */
/* Wrap the local buffer for elements */
if (NULL == (elem_wb = H5WB_wrap(elem_buf, sizeof(elem_buf))))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't wrap buffer")
/* Get a pointer to a buffer that's large enough for element */
if (NULL == (elem_ptr = H5WB_actual_clear(elem_wb, dst_type_size)))
HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't get actual buffer")
/* Fill the selection in the memory buffer */
if (H5S_select_fill(elem_ptr, dst_type_size, space, buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed")
} /* end if */
else {
H5T_path_t *tpath; /* Conversion path information */
size_t src_type_size; /* Size of source type */
size_t buf_size; /* Desired buffer size */
/* Get the file datatype size */
src_type_size = H5T_get_size(fill_type);
/* Get the maximum buffer size needed and allocate it */
buf_size = MAX(src_type_size, dst_type_size);
/* Set up type conversion function */
if (NULL == (tpath = H5T_path_find(fill_type, buf_type)))
HGOTO_ERROR(H5E_DATASET, H5E_UNSUPPORTED, FAIL, "unable to convert between src and dest datatype")
/* Construct source & destination datatype IDs, if we will need them */
if (!H5T_path_noop(tpath)) {
if ((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill_type, H5T_COPY_ALL), FALSE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
if ((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(buf_type, H5T_COPY_ALL), FALSE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register types for conversion")
} /* end if */
/* If there's VL type of data, make multiple copies of fill value first,
* then do conversion on each element so that each of them has a copy
* of the VL data.
*/
if (TRUE == H5T_detect_class(fill_type, H5T_VLEN, FALSE)) {
hsize_t nelmts; /* Number of data elements */
/* Get the number of elements in the selection */
nelmts = H5S_GET_SELECT_NPOINTS(space);
H5_CHECK_OVERFLOW(nelmts, hsize_t, size_t);
/* Allocate a temporary buffer */
if (NULL == (tmp_buf = H5FL_BLK_MALLOC(type_conv, (size_t)nelmts * buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Allocate a background buffer, if necessary */
if (H5T_path_bkg(tpath) &&
NULL == (bkg_buf = H5FL_BLK_CALLOC(type_conv, (size_t)nelmts * buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Replicate the file's fill value into the temporary buffer */
H5VM_array_fill(tmp_buf, fill, src_type_size, (size_t)nelmts);
/* Convert from file's fill value into memory form */
if (H5T_convert(tpath, src_id, dst_id, (size_t)nelmts, (size_t)0, (size_t)0, tmp_buf, bkg_buf) <
0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed")
/* Allocate the chunk selection iterator */
if (NULL == (mem_iter = H5FL_MALLOC(H5S_sel_iter_t)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "can't allocate memory selection iterator")
/* Create a selection iterator for scattering the elements to memory buffer */
if (H5S_select_iter_init(mem_iter, space, dst_type_size, 0) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL,
"unable to initialize memory selection information")
mem_iter_init = TRUE;
/* Scatter the data into memory */
if (H5D__scatter_mem(tmp_buf, mem_iter, (size_t)nelmts, buf /*out*/) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "scatter failed")
} /* end if */
else {
const uint8_t *fill_buf; /* Buffer to use for writing fill values */
/* Convert disk buffer into memory buffer */
if (!H5T_path_noop(tpath)) {
void *elem_ptr; /* Pointer to element to use for fill value */
void *bkg_ptr = NULL; /* Pointer to background element to use for fill value */
/* Wrap the local buffer for elements */
if (NULL == (elem_wb = H5WB_wrap(elem_buf, sizeof(elem_buf))))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't wrap buffer")
/* Get a pointer to a buffer that's large enough for element */
if (NULL == (elem_ptr = H5WB_actual(elem_wb, buf_size)))
HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't get actual buffer")
/* Copy the user's data into the buffer for conversion */
H5MM_memcpy(elem_ptr, fill, src_type_size);
/* If there's no VL type of data, do conversion first then fill the data into
* the memory buffer. */
if (H5T_path_bkg(tpath)) {
/* Wrap the local buffer for background elements */
if (NULL == (bkg_elem_wb = H5WB_wrap(bkg_elem_buf, sizeof(bkg_elem_buf))))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't wrap buffer")
/* Get a pointer to a buffer that's large enough for element */
if (NULL == (bkg_ptr = H5WB_actual_clear(bkg_elem_wb, buf_size)))
HGOTO_ERROR(H5E_DATASET, H5E_NOSPACE, FAIL, "can't get actual buffer")
} /* end if */
/* Perform datatype conversion */
if (H5T_convert(tpath, src_id, dst_id, (size_t)1, (size_t)0, (size_t)0, elem_ptr, bkg_ptr) <
0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed")
/* Point at element buffer */
fill_buf = (const uint8_t *)elem_ptr;
} /* end if */
else
fill_buf = (const uint8_t *)fill;
/* Fill the selection in the memory buffer */
if (H5S_select_fill(fill_buf, dst_type_size, space, buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTENCODE, FAIL, "filling selection failed")
} /* end else */
} /* end else */
done:
if (mem_iter_init && H5S_SELECT_ITER_RELEASE(mem_iter) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "Can't release selection iterator")
if (mem_iter)
mem_iter = H5FL_FREE(H5S_sel_iter_t, mem_iter);
if (src_id != (-1) && H5I_dec_ref(src_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "Can't decrement temporary datatype ID")
if (dst_id != (-1) && H5I_dec_ref(dst_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "Can't decrement temporary datatype ID")
if (tmp_buf)
tmp_buf = H5FL_BLK_FREE(type_conv, tmp_buf);
if (elem_wb && H5WB_unwrap(elem_wb) < 0)
HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, FAIL, "can't close wrapped buffer")
if (bkg_elem_wb && H5WB_unwrap(bkg_elem_wb) < 0)
HDONE_ERROR(H5E_ATTR, H5E_CLOSEERROR, FAIL, "can't close wrapped buffer")
if (bkg_buf)
bkg_buf = H5FL_BLK_FREE(type_conv, bkg_buf);
FUNC_LEAVE_NOAPI(ret_value)
} /* H5D__fill() */
/*-------------------------------------------------------------------------
* Function: H5D__fill_init
*
* Purpose: Initialize buffer filling operation
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* June 21, 2007
*
*-------------------------------------------------------------------------
*/
herr_t
H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf, H5MM_allocate_t alloc_func,
void *alloc_info, H5MM_free_t free_func, void *free_info, const H5O_fill_t *fill,
const H5T_t *dset_type, hid_t dset_type_id, size_t total_nelmts, size_t max_buf_size)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
HDassert(fb_info);
HDassert(fill);
HDassert(dset_type);
HDassert(dset_type_id > 0);
/* Reset fill buffer information */
HDmemset(fb_info, 0, sizeof(*fb_info));
/* Cache constant information from the dataset */
fb_info->fill = fill;
fb_info->file_type = dset_type;
fb_info->file_tid = dset_type_id;
fb_info->fill_alloc_func = alloc_func;
fb_info->fill_alloc_info = alloc_info;
fb_info->fill_free_func = free_func;
fb_info->fill_free_info = free_info;
/* Fill the buffer with the user's fill value */
if (fill->buf) {
htri_t has_vlen_type; /* Whether the datatype has a VL component */
/* Detect whether the datatype has a VL component */
if ((has_vlen_type = H5T_detect_class(dset_type, H5T_VLEN, FALSE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_BADVALUE, FAIL, "unable to detect vlen datatypes?")
fb_info->has_vlen_fill_type = (hbool_t)has_vlen_type;
/* If necessary, convert fill value datatypes (which copies VL components, etc.) */
if (fb_info->has_vlen_fill_type) {
/* Create temporary datatype for conversion operation */
if (NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_TRANSIENT)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTCOPY, FAIL, "unable to copy file datatype")
if ((fb_info->mem_tid = H5I_register(H5I_DATATYPE, fb_info->mem_type, FALSE)) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register memory datatype")
/* Retrieve sizes of memory & file datatypes */
fb_info->mem_elmt_size = H5T_get_size(fb_info->mem_type);
HDassert(fb_info->mem_elmt_size > 0);
fb_info->file_elmt_size = H5T_get_size(dset_type);
HDassert(fb_info->file_elmt_size == (size_t)fill->size);
/* If fill value is not library default, use it to set the element size */
fb_info->max_elmt_size = MAX(fb_info->mem_elmt_size, fb_info->file_elmt_size);
/* Compute the number of elements that fit within a buffer to write */
if (total_nelmts > 0)
fb_info->elmts_per_buf = MIN(total_nelmts, MAX(1, (max_buf_size / fb_info->max_elmt_size)));
else
fb_info->elmts_per_buf = max_buf_size / fb_info->max_elmt_size;
HDassert(fb_info->elmts_per_buf > 0);
/* Compute the buffer size to use */
fb_info->fill_buf_size = MIN(max_buf_size, (fb_info->elmts_per_buf * fb_info->max_elmt_size));
/* Allocate fill buffer */
if (caller_fill_buf) {
fb_info->fill_buf = caller_fill_buf;
fb_info->use_caller_fill_buf = TRUE;
} /* end if */
else {
if (alloc_func)
fb_info->fill_buf = alloc_func(fb_info->fill_buf_size, alloc_info);
else
fb_info->fill_buf = H5FL_BLK_MALLOC(non_zero_fill, fb_info->fill_buf_size);
if (NULL == fb_info->fill_buf)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for fill buffer")
} /* end else */
/* Get the datatype conversion path for this operation */
if (NULL == (fb_info->fill_to_mem_tpath = H5T_path_find(dset_type, fb_info->mem_type)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL,
"unable to convert between src and dst datatypes")
/* Get the inverse datatype conversion path for this operation */
if (NULL == (fb_info->mem_to_dset_tpath = H5T_path_find(fb_info->mem_type, dset_type)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL,
"unable to convert between src and dst datatypes")
/* Check if we need to allocate a background buffer */
if (H5T_path_bkg(fb_info->fill_to_mem_tpath) || H5T_path_bkg(fb_info->mem_to_dset_tpath)) {
/* Check for inverse datatype conversion needing a background buffer */
/* (do this first, since it needs a larger buffer) */
if (H5T_path_bkg(fb_info->mem_to_dset_tpath))
fb_info->bkg_buf_size = fb_info->elmts_per_buf * fb_info->max_elmt_size;
else
fb_info->bkg_buf_size = fb_info->max_elmt_size;
/* Allocate the background buffer */
if (NULL == (fb_info->bkg_buf = H5FL_BLK_MALLOC(type_conv, fb_info->bkg_buf_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
} /* end if */
} /* end if */
else {
/* If fill value is not library default, use it to set the element size */
HDassert(fill->size >= 0);
fb_info->max_elmt_size = fb_info->file_elmt_size = fb_info->mem_elmt_size = (size_t)fill->size;
/* Compute the number of elements that fit within a buffer to write */
if (total_nelmts > 0)
fb_info->elmts_per_buf = MIN(total_nelmts, MAX(1, (max_buf_size / fb_info->max_elmt_size)));
else
fb_info->elmts_per_buf = max_buf_size / fb_info->max_elmt_size;
HDassert(fb_info->elmts_per_buf > 0);
/* Compute the buffer size to use */
fb_info->fill_buf_size = MIN(max_buf_size, fb_info->elmts_per_buf * fb_info->max_elmt_size);
/* Allocate temporary buffer */
if (caller_fill_buf) {
fb_info->fill_buf = caller_fill_buf;
fb_info->use_caller_fill_buf = TRUE;
} /* end if */
else {
if (alloc_func)
fb_info->fill_buf = alloc_func(fb_info->fill_buf_size, alloc_info);
else
fb_info->fill_buf = H5FL_BLK_MALLOC(non_zero_fill, fb_info->fill_buf_size);
if (NULL == fb_info->fill_buf)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for fill buffer")
} /* end else */
/* Replicate the fill value into the cached buffer */
H5VM_array_fill(fb_info->fill_buf, fill->buf, fb_info->max_elmt_size, fb_info->elmts_per_buf);
} /* end else */
} /* end if */
else { /* Fill the buffer with the default fill value */
/* Retrieve size of elements */
fb_info->max_elmt_size = fb_info->file_elmt_size = fb_info->mem_elmt_size = H5T_get_size(dset_type);
HDassert(fb_info->max_elmt_size > 0);
/* Compute the number of elements that fit within a buffer to write */
if (total_nelmts > 0)
fb_info->elmts_per_buf = MIN(total_nelmts, MAX(1, (max_buf_size / fb_info->max_elmt_size)));
else
fb_info->elmts_per_buf = max_buf_size / fb_info->max_elmt_size;
HDassert(fb_info->elmts_per_buf > 0);
/* Compute the buffer size to use */
fb_info->fill_buf_size = MIN(max_buf_size, (fb_info->elmts_per_buf * fb_info->max_elmt_size));
/* Use (and zero) caller's buffer, if provided */
if (caller_fill_buf) {
fb_info->fill_buf = caller_fill_buf;
fb_info->use_caller_fill_buf = TRUE;
HDmemset(fb_info->fill_buf, 0, fb_info->fill_buf_size);
} /* end if */
else {
if (alloc_func) {
fb_info->fill_buf = alloc_func(fb_info->fill_buf_size, alloc_info);
HDmemset(fb_info->fill_buf, 0, fb_info->fill_buf_size);
} /* end if */
else {
htri_t buf_avail = H5FL_BLK_AVAIL(
zero_fill,
fb_info->fill_buf_size); /* Check if there is an already zeroed out buffer available */
HDassert(buf_avail != FAIL);
/* Allocate temporary buffer (zeroing it if no buffer is available) */
if (!buf_avail)
fb_info->fill_buf = H5FL_BLK_CALLOC(zero_fill, fb_info->fill_buf_size);
else
fb_info->fill_buf = H5FL_BLK_MALLOC(zero_fill, fb_info->fill_buf_size);
} /* end else */
if (fb_info->fill_buf == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for fill buffer")
} /* end else */
} /* end else */
done:
/* Cleanup on error */
if (ret_value < 0)
if (H5D__fill_term(fb_info) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "Can't release fill buffer info")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__fill_init() */
/*-------------------------------------------------------------------------
* Function: H5D__fill_refill_vl
*
* Purpose: Refill fill value buffer that contains VL-datatype fill values
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* June 21, 2007
*
*-------------------------------------------------------------------------
*/
herr_t
H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts)
{
herr_t ret_value = SUCCEED; /* Return value */
void * buf = NULL; /* Temporary fill buffer */
FUNC_ENTER_PACKAGE
/* Check args */
HDassert(fb_info);
HDassert(fb_info->has_vlen_fill_type);
HDassert(fb_info->fill_buf);
/* Make a copy of the (disk-based) fill value into the buffer */
H5MM_memcpy(fb_info->fill_buf, fb_info->fill->buf, fb_info->file_elmt_size);
/* Reset first element of background buffer, if necessary */
if (H5T_path_bkg(fb_info->fill_to_mem_tpath))
HDmemset(fb_info->bkg_buf, 0, fb_info->max_elmt_size);
/* Type convert the dataset buffer, to copy any VL components */
if (H5T_convert(fb_info->fill_to_mem_tpath, fb_info->file_tid, fb_info->mem_tid, (size_t)1, (size_t)0,
(size_t)0, fb_info->fill_buf, fb_info->bkg_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed")
/* Replicate the fill value into the cached buffer */
if (nelmts > 1)
H5VM_array_fill((void *)((unsigned char *)fb_info->fill_buf + fb_info->mem_elmt_size),
fb_info->fill_buf, fb_info->mem_elmt_size, (nelmts - 1));
/* Reset the entire background buffer, if necessary */
if (H5T_path_bkg(fb_info->mem_to_dset_tpath))
HDmemset(fb_info->bkg_buf, 0, fb_info->bkg_buf_size);
/* Make a copy of the fill buffer so we can free dynamic elements after conversion */
if (fb_info->fill_alloc_func)
buf = fb_info->fill_alloc_func(fb_info->fill_buf_size, fb_info->fill_alloc_info);
else
buf = H5FL_BLK_MALLOC(non_zero_fill, fb_info->fill_buf_size);
if (!buf)
HGOTO_ERROR(H5E_DATASET, H5E_CANTALLOC, FAIL, "memory allocation failed for temporary fill buffer")
H5MM_memcpy(buf, fb_info->fill_buf, fb_info->fill_buf_size);
/* Type convert the dataset buffer, to copy any VL components */
if (H5T_convert(fb_info->mem_to_dset_tpath, fb_info->mem_tid, fb_info->file_tid, nelmts, (size_t)0,
(size_t)0, fb_info->fill_buf, fb_info->bkg_buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTCONVERT, FAIL, "data type conversion failed")
done:
if (buf) {
/* Free dynamically allocated VL elements in fill buffer */
if (fb_info->fill->type) {
if (H5T_vlen_reclaim_elmt(buf, fb_info->fill->type) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't reclaim vlen element")
} /* end if */
else {
if (H5T_vlen_reclaim_elmt(buf, fb_info->mem_type) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTFREE, FAIL, "can't reclaim vlen element")
} /* end else */
/* Free temporary fill buffer */
if (fb_info->fill_free_func)
fb_info->fill_free_func(buf, fb_info->fill_free_info);
else
buf = H5FL_BLK_FREE(non_zero_fill, buf);
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5D__fill_refill_vl() */
/*-------------------------------------------------------------------------
* Function: H5D__fill_release
*
* Purpose: Release fill value buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* June 22, 2007
*
*-------------------------------------------------------------------------
*/
static herr_t
H5D__fill_release(H5D_fill_buf_info_t *fb_info)
{
FUNC_ENTER_STATIC_NOERR
/* Check args */
HDassert(fb_info);
HDassert(fb_info->fill);
/* Free the buffer for fill values */
if (!fb_info->use_caller_fill_buf && fb_info->fill_buf) {
if (fb_info->fill_free_func)
fb_info->fill_free_func(fb_info->fill_buf, fb_info->fill_free_info);
else {
if (fb_info->fill->buf)
fb_info->fill_buf = H5FL_BLK_FREE(non_zero_fill, fb_info->fill_buf);
else
fb_info->fill_buf = H5FL_BLK_FREE(zero_fill, fb_info->fill_buf);
} /* end else */
fb_info->fill_buf = NULL;
} /* end if */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__fill_release() */
/*-------------------------------------------------------------------------
* Function: H5D__fill_term
*
* Purpose: Release fill value buffer info
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* June 21, 2007
*
*-------------------------------------------------------------------------
*/
herr_t
H5D__fill_term(H5D_fill_buf_info_t *fb_info)
{
FUNC_ENTER_PACKAGE_NOERR
/* Check args */
HDassert(fb_info);
/* Free the buffer for fill values */
H5D__fill_release(fb_info);
/* Free other resources for vlen fill values */
if (fb_info->has_vlen_fill_type) {
if (fb_info->mem_tid > 0)
H5I_dec_ref(fb_info->mem_tid);
else if (fb_info->mem_type)
(void)H5T_close_real(fb_info->mem_type);
if (fb_info->bkg_buf)
fb_info->bkg_buf = H5FL_BLK_FREE(type_conv, fb_info->bkg_buf);
} /* end if */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5D__fill_term() */
|