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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/****************/
/* Module Setup */
/****************/
#include "H5Dmodule.h" /* This source code file is part of the H5D module */
#define H5O_FRIEND /*suppress error about including H5Opkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
#include "H5Dpkg.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free lists */
#include "H5Iprivate.h" /* IDs */
#include "H5Opkg.h" /* Object headers */
#include "H5VLprivate.h" /* Virtual Object Layer */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Local Prototypes */
/********************/
static void *H5O__dset_get_copy_file_udata(void);
static void H5O__dset_free_copy_file_udata(void *);
static htri_t H5O__dset_isa(const H5O_t *loc);
static void *H5O__dset_open(const H5G_loc_t *obj_loc, H5I_type_t *opened_type);
static void *H5O__dset_create(H5F_t *f, void *_crt_info, H5G_loc_t *obj_loc);
static H5O_loc_t *H5O__dset_get_oloc(hid_t obj_id);
static herr_t H5O__dset_bh_info(const H5O_loc_t *loc, H5O_t *oh, H5_ih_info_t *bh_info);
static herr_t H5O__dset_flush(void *_obj_ptr);
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* This message derives from H5O object class */
const H5O_obj_class_t H5O_OBJ_DATASET[1] = {{
H5O_TYPE_DATASET, /* object type */
"dataset", /* object name, for debugging */
H5O__dset_get_copy_file_udata, /* get 'copy file' user data */
H5O__dset_free_copy_file_udata, /* free 'copy file' user data */
H5O__dset_isa, /* "isa" message */
H5O__dset_open, /* open an object of this class */
H5O__dset_create, /* create an object of this class */
H5O__dset_get_oloc, /* get an object header location for an object */
H5O__dset_bh_info, /* get the index & heap info for an object */
H5O__dset_flush /* flush an opened object of this class */
}};
/* Declare a free list to manage the H5D_copy_file_ud_t struct */
H5FL_DEFINE(H5D_copy_file_ud_t);
/*-------------------------------------------------------------------------
* Function: H5O__dset_get_copy_file_udata
*
* Purpose: Allocates the user data needed for copying a dataset's
* object header from file to file.
*
* Return: Success: Non-NULL pointer to user data
*
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
static void *
H5O__dset_get_copy_file_udata(void)
{
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
/* Allocate space for the 'copy file' user data for copying datasets */
if (NULL == (ret_value = H5FL_CALLOC(H5D_copy_file_ud_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_get_copy_file_udata() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_free_copy_file_udata
*
* Purpose: Release the user data needed for copying a dataset's
* object header from file to file.
*
* Return: <none>
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
static void
H5O__dset_free_copy_file_udata(void *_udata)
{
H5D_copy_file_ud_t *udata = (H5D_copy_file_ud_t *)_udata;
FUNC_ENTER_STATIC_NOERR
/* Sanity check */
HDassert(udata);
/* Release copy of dataset's dataspace extent, if it was set */
if (udata->src_space_extent)
H5O_msg_free(H5O_SDSPACE_ID, udata->src_space_extent);
/* Release copy of dataset's datatype, if it was set */
if (udata->src_dtype)
H5T_close_real(udata->src_dtype);
/* Release copy of dataset's filter pipeline, if it was set */
if (udata->common.src_pline)
H5O_msg_free(H5O_PLINE_ID, udata->common.src_pline);
/* Release space for 'copy file' user data */
udata = H5FL_FREE(H5D_copy_file_ud_t, udata);
FUNC_LEAVE_NOAPI_VOID
} /* end H5O__dset_free_copy_file_udata() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_isa
*
* Purpose: Determines if an object has the requisite messages for being
* a dataset.
*
* Return: Success: TRUE if the required dataset messages are
* present; FALSE otherwise.
*
* Failure: FAIL if the existence of certain messages
* cannot be determined.
*
* Programmer: Robb Matzke
* Monday, November 2, 1998
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O__dset_isa(const H5O_t *oh)
{
htri_t exists; /* Flag if header message of interest exists */
htri_t ret_value = TRUE; /* Return value */
FUNC_ENTER_STATIC
HDassert(oh);
/* Datatype */
if ((exists = H5O_msg_exists_oh(oh, H5O_DTYPE_ID)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
else if (!exists)
HGOTO_DONE(FALSE)
/* Layout */
if ((exists = H5O_msg_exists_oh(oh, H5O_SDSPACE_ID)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to read object header")
else if (!exists)
HGOTO_DONE(FALSE)
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_isa() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_open
*
* Purpose: Open a dataset at a particular location
*
* Return: Success: Open object identifier
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, November 6, 2006
*
*-------------------------------------------------------------------------
*/
static void *
H5O__dset_open(const H5G_loc_t *obj_loc, H5I_type_t *opened_type)
{
H5D_t *dset = NULL; /* Dataset opened */
hid_t dapl_id; /* dapl to use to open this dataset */
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
HDassert(obj_loc);
*opened_type = H5I_DATASET;
/* Get the LAPL (which is a superclass of DAPLs) from the API context, but
* if it's the default link access property list or a custom link access
* property list but not a dataset access property list, use the default
* dataset access property list instead. (Since LAPLs don't have the
* additional properties that DAPLs have)
*/
dapl_id = H5CX_get_lapl();
if (dapl_id == H5P_LINK_ACCESS_DEFAULT)
dapl_id = H5P_DATASET_ACCESS_DEFAULT;
else {
htri_t is_lapl, is_dapl; /* Class of LAPL from API context */
/* Check class of LAPL from API context */
if ((is_lapl = H5P_isa_class(dapl_id, H5P_LINK_ACCESS)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "unable to get LAPL status")
if ((is_dapl = H5P_isa_class(dapl_id, H5P_DATASET_ACCESS)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, NULL, "unable to get DAPL status")
/* Switch to default DAPL if not an actual DAPL in the API context */
if (!is_dapl && is_lapl)
dapl_id = H5P_DATASET_ACCESS_DEFAULT;
} /* end else */
/* Open the dataset */
if (NULL == (dset = H5D_open(obj_loc, dapl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTOPENOBJ, NULL, "unable to open dataset")
ret_value = (void *)dset;
done:
if (NULL == ret_value)
if (dset && H5D_close(dset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, NULL, "unable to release dataset")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_open() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_create
*
* Purpose: Create a dataset in a file
*
* Return: Success: Pointer to the dataset data structure
* Failure: NULL
*
* Programmer: Quincey Koziol
* Wednesday, April 11, 2007
*
*-------------------------------------------------------------------------
*/
static void *
H5O__dset_create(H5F_t *f, void *_crt_info, H5G_loc_t *obj_loc)
{
H5D_obj_create_t *crt_info = (H5D_obj_create_t *)_crt_info; /* Dataset creation parameters */
H5D_t *dset = NULL; /* New dataset created */
void *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
/* Sanity checks */
HDassert(f);
HDassert(crt_info);
HDassert(obj_loc);
/* Create the the dataset */
if (NULL ==
(dset = H5D__create(f, crt_info->type_id, crt_info->space, crt_info->dcpl_id, crt_info->dapl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, NULL, "unable to create dataset")
/* Set up the new dataset's location */
if (NULL == (obj_loc->oloc = H5D_oloc(dset)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get object location of dataset")
if (NULL == (obj_loc->path = H5D_nameof(dset)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "unable to get path of dataset")
/* Set the return value */
ret_value = dset;
done:
if (ret_value == NULL)
if (dset && H5D_close(dset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, NULL, "unable to release dataset")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_create() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_get_oloc
*
* Purpose: Retrieve the object header location for an open object
*
* Return: Success: Pointer to object header location
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 6, 2006
*
*-------------------------------------------------------------------------
*/
static H5O_loc_t *
H5O__dset_get_oloc(hid_t obj_id)
{
H5D_t *dset; /* Dataset opened */
H5O_loc_t *ret_value = NULL; /* Return value */
FUNC_ENTER_STATIC
/* Get the dataset */
if (NULL == (dset = (H5D_t *)H5VL_object(obj_id)))
HGOTO_ERROR(H5E_OHDR, H5E_BADATOM, NULL, "couldn't get object from ID")
/* Get the dataset's object header location */
if (NULL == (ret_value = H5D_oloc(dset)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from object")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_get_oloc() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_bh_info
*
* Purpose: Returns the amount of btree storage that is used for chunked
* dataset.
*
* Return: Success: non-negative
* Failure: negative
*
* Programmer: Vailin Choi
* July 11, 2007
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O__dset_bh_info(const H5O_loc_t *loc, H5O_t *oh, H5_ih_info_t *bh_info)
{
H5O_layout_t layout; /* Data storage layout message */
H5O_efl_t efl; /* External File List message */
hbool_t layout_read = FALSE; /* Whether the layout message was read */
hbool_t efl_read = FALSE; /* Whether the external file list message was read */
htri_t exists; /* Flag if header message of interest exists */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
/* Sanity check */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(oh);
HDassert(bh_info);
/* Get the layout message from the object header */
if (NULL == H5O_msg_read_oh(loc->file, oh, H5O_LAYOUT_ID, &layout))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find layout message")
layout_read = TRUE;
/* Check for chunked dataset storage */
if (layout.type == H5D_CHUNKED && H5D__chunk_is_space_alloc(&layout.storage)) {
/* Get size of chunk index */
if (H5D__chunk_bh_info(loc, oh, &layout, &(bh_info->index_size)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't determine chunked dataset btree info")
} /* end if */
else if (layout.type == H5D_VIRTUAL && (layout.storage.u.virt.serial_list_hobjid.addr != HADDR_UNDEF)) {
size_t virtual_heap_size;
/* Get size of global heap object for virtual dataset */
if (H5HG_get_obj_size(loc->file, &(layout.storage.u.virt.serial_list_hobjid), &virtual_heap_size) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL,
"can't get global heap size for virtual dataset mapping")
/* Return heap size */
bh_info->heap_size = (hsize_t)virtual_heap_size;
} /* end if */
/* Check for External File List message in the object header */
if ((exists = H5O_msg_exists_oh(oh, H5O_EFL_ID)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "unable to check for EFL message")
if (exists && H5D__efl_is_space_alloc(&layout.storage)) {
/* Start with clean EFL info */
HDmemset(&efl, 0, sizeof(efl));
/* Get External File List message from the object header */
if (NULL == H5O_msg_read_oh(loc->file, oh, H5O_EFL_ID, &efl))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't find EFL message")
efl_read = TRUE;
/* Get size of local heap for EFL message's file list */
if (H5D__efl_bh_info(loc->file, &efl, &(bh_info->heap_size)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "can't determine EFL heap info")
} /* end if */
done:
/* Free messages, if they've been read in */
if (layout_read && H5O_msg_reset(H5O_LAYOUT_ID, &layout) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset data storage layout message")
if (efl_read && H5O_msg_reset(H5O_EFL_ID, &efl) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRESET, FAIL, "unable to reset external file list message")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_bh_info() */
/*-------------------------------------------------------------------------
* Function: H5O__dset_flush
*
* Purpose: To flush any dataset information cached in memory
*
* Return: Success: non-negative
* Failure: negative
*
* Programmer: Vailin Choi
* February 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O__dset_flush(void *_obj_ptr)
{
H5D_t *dset = (H5D_t *)_obj_ptr; /* Pointer to dataset object */
H5O_type_t obj_type; /* Type of object at location */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
HDassert(dset);
HDassert(&dset->oloc);
/* Check that the object found is the correct type */
if (H5O_obj_type(&dset->oloc, &obj_type) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get object type")
if (obj_type != H5O_TYPE_DATASET)
HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a dataset")
if (H5D__flush_real(dset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "unable to flush cached dataset info")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O__dset_flush() */
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