1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
* Monday, April 14, 2003
*
* Purpose: This file contains declarations which are visible only within
* the H5D package. Source files outside the H5D package should
* include H5Dprivate.h instead.
*/
#ifndef H5D_PACKAGE
#error "Do not include this file outside the H5D package!"
#endif
#ifndef _H5Dpkg_H
#define _H5Dpkg_H
/* Get package's private header */
#include "H5Dprivate.h"
/* Other private headers needed by this file */
#include "H5Gprivate.h" /* Groups */
#include "H5Oprivate.h" /* Object headers */
#include "H5Sprivate.h" /* Dataspaces */
#include "H5Tprivate.h" /* Datatype functions */
/**************************/
/* Package Private Macros */
/**************************/
/* The number of reserved IDs in dataset ID group */
#define H5D_RESERVED_ATOMS 0
/* Set the minimum object header size to create objects with */
#define H5D_MINHDR_SIZE 256
/****************************/
/* Package Private Typedefs */
/****************************/
/* The raw data chunk cache */
typedef struct H5D_rdcc_t {
unsigned ninits; /* Number of chunk creations */
unsigned nhits; /* Number of cache hits */
unsigned nmisses;/* Number of cache misses */
unsigned nflushes;/* Number of cache flushes */
size_t nbytes; /* Current cached raw data in bytes */
size_t nslots; /* Number of chunk slots allocated */
struct H5D_rdcc_ent_t *head; /* Head of doubly linked list */
struct H5D_rdcc_ent_t *tail; /* Tail of doubly linked list */
int nused; /* Number of chunk slots in use */
struct H5D_rdcc_ent_t **slot; /* Chunk slots, each points to a chunk*/
} H5D_rdcc_t;
/* The raw data contiguous data cache */
typedef struct H5D_rdcdc_t {
unsigned char *sieve_buf; /* Buffer to hold data sieve buffer */
haddr_t sieve_loc; /* File location (offset) of the data sieve buffer */
size_t sieve_size; /* Size of the data sieve buffer used (in bytes) */
size_t sieve_buf_size; /* Size of the data sieve buffer allocated (in bytes) */
unsigned sieve_dirty; /* Flag to indicate that the data sieve buffer is dirty */
} H5D_rdcdc_t;
/*
* A dataset is made of two layers, an H5D_t struct that is unique to
* each instance of an opened datset, and a shared struct that is only
* created once for a given dataset. Thus, if a dataset is opened twice,
* there will be two IDs and two H5D_t structs, both sharing one H5D_shared_t.
*/
typedef struct H5D_shared_t {
size_t fo_count; /* reference count */
hid_t type_id; /* ID for dataset's datatype */
H5T_t *type; /* datatype of this dataset */
H5S_t *space; /* dataspace of this dataset */
hid_t dcpl_id; /* dataset creation property id */
H5D_dcpl_cache_t dcpl_cache; /* Cached DCPL values */
H5O_layout_t layout; /* data layout */
hbool_t checked_filters;/* TRUE if dataset passes can_apply check */
/* Cache some frequently accessed values from the DCPL */
H5O_efl_t efl; /* External file list information */
H5D_alloc_time_t alloc_time; /* Dataset allocation time */
H5D_fill_time_t fill_time; /* Dataset fill value writing time */
H5O_fill_t fill; /* Dataset fill value information */
/* Buffered/cached information for types of raw data storage*/
struct {
H5D_rdcdc_t contig; /* Information about contiguous data */
/* (Note that the "contig" cache
* information can be used by a chunked
* dataset in certain circumstances)
*/
H5D_rdcc_t chunk; /* Information about chunked data */
}cache;
} H5D_shared_t;
struct H5D_t {
H5G_entry_t ent; /* cached object header stuff */
H5D_shared_t *shared; /* cached information from file */
};
/* Enumerated type for allocating dataset's storage */
typedef enum {
H5D_ALLOC_CREATE, /* Dataset is being created */
H5D_ALLOC_OPEN, /* Dataset is being opened */
H5D_ALLOC_EXTEND, /* Dataset's dataspace is being extended */
H5D_ALLOC_WRITE /* Dataset is being extended */
} H5D_time_alloc_t;
/*****************************/
/* Package Private Variables */
/*****************************/
extern H5D_dxpl_cache_t H5D_def_dxpl_cache;
/******************************/
/* Package Private Prototypes */
/******************************/
H5_DLL herr_t H5D_alloc_storage (H5F_t *f, hid_t dxpl_id, H5D_t *dset, H5D_time_alloc_t time_alloc,
hbool_t update_time, hbool_t full_overwrite);
/* Functions that operate on contiguous storage */
H5_DLL herr_t H5D_contig_create(H5F_t *f, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_contig_fill(H5F_t *f, hid_t dxpl_id, H5D_t *dset);
/* Functions that operate on indexed storage */
H5_DLL herr_t H5D_istore_init (H5F_t *f, H5D_t *dset);
H5_DLL herr_t H5D_istore_flush (H5F_t *f, hid_t dxpl_id, H5D_t *dset, unsigned flags);
H5_DLL herr_t H5D_istore_create(H5F_t *f, hid_t dxpl_id,
H5O_layout_t *layout/*in,out*/);
H5_DLL herr_t H5D_istore_dest (H5F_t *f, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_istore_allocate (H5F_t *f, hid_t dxpl_id,
const H5D_t *dset, hbool_t full_overwrite);
H5_DLL hsize_t H5D_istore_allocated(H5F_t *f, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_istore_prune_by_extent( H5F_t *f,
const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_istore_initialize_by_extent( H5F_t *f,
const H5D_dxpl_cache_t *dxpl_cache, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_istore_update_cache(H5F_t *f, hid_t dxpl_id, H5D_t *dset);
H5_DLL herr_t H5D_istore_dump_btree(H5F_t *f, hid_t dxpl_id, FILE *stream, unsigned ndims,
haddr_t addr);
#ifdef H5D_ISTORE_DEBUG
H5_DLL herr_t H5D_istore_stats (H5D_t *dset, hbool_t headers);
#endif /* H5D_ISTORE_DEBUG */
/* Testing functions */
#ifdef H5D_TESTING
H5_DLL herr_t H5D_layout_version_test(hid_t did, unsigned *version);
H5_DLL herr_t H5D_layout_contig_size_test(hid_t did, hsize_t *size);
#endif /* H5D_TESTING */
#endif /*_H5Dpkg_H*/
|