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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5EAcache.c
* Aug 26 2008
* Quincey Koziol <koziol@hdfgroup.org>
*
* Purpose: Implement extensible array metadata cache methods.
*
*-------------------------------------------------------------------------
*/
/**********************/
/* Module Declaration */
/**********************/
#define H5EA_MODULE
/***********************/
/* Other Packages Used */
/***********************/
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5EApkg.h" /* Extensible Arrays */
#include "H5MFprivate.h" /* File memory management */
#include "H5Vprivate.h" /* Vectors and arrays */
#include "H5WBprivate.h" /* Wrapped Buffers */
/****************/
/* Local Macros */
/****************/
/* Fractal heap format version #'s */
#define H5EA_HDR_VERSION 0 /* Header */
#define H5EA_IBLOCK_VERSION 0 /* Index block */
#define H5EA_DBLOCK_VERSION 0 /* Data block */
/* Size of stack buffer for serialization buffers */
#define H5EA_HDR_BUF_SIZE 512
#define H5EA_IBLOCK_BUF_SIZE 512
#define H5EA_DBLOCK_BUF_SIZE 512
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/* Metadata cache (H5AC) callbacks */
static H5EA_hdr_t *H5EA__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *udata, void *udata2);
static herr_t H5EA__cache_hdr_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5EA_hdr_t *hdr, unsigned * flags_ptr);
static herr_t H5EA__cache_hdr_clear(H5F_t *f, H5EA_hdr_t *hdr, hbool_t destroy);
static herr_t H5EA__cache_hdr_size(const H5F_t *f, const H5EA_hdr_t *hdr, size_t *size_ptr);
static herr_t H5EA__cache_hdr_dest(H5F_t *f, H5EA_hdr_t *hdr);
static H5EA_iblock_t *H5EA__cache_iblock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *udata, void *udata2);
static herr_t H5EA__cache_iblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5EA_iblock_t *iblock, unsigned * flags_ptr);
static herr_t H5EA__cache_iblock_clear(H5F_t *f, H5EA_iblock_t *iblock, hbool_t destroy);
static herr_t H5EA__cache_iblock_size(const H5F_t *f, const H5EA_iblock_t *iblock, size_t *size_ptr);
static herr_t H5EA__cache_iblock_dest(H5F_t *f, H5EA_iblock_t *iblock);
static H5EA_dblock_t *H5EA__cache_dblock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *udata, void *udata2);
static herr_t H5EA__cache_dblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5EA_dblock_t *dblock, unsigned * flags_ptr);
static herr_t H5EA__cache_dblock_clear(H5F_t *f, H5EA_dblock_t *dblock, hbool_t destroy);
static herr_t H5EA__cache_dblock_size(const H5F_t *f, const H5EA_dblock_t *dblock, size_t *size_ptr);
static herr_t H5EA__cache_dblock_dest(H5F_t *f, H5EA_dblock_t *dblock);
/*********************/
/* Package Variables */
/*********************/
/* H5EA header inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_EARRAY_HDR[1] = {{
H5AC_EARRAY_HDR_ID,
(H5AC_load_func_t)H5EA__cache_hdr_load,
(H5AC_flush_func_t)H5EA__cache_hdr_flush,
(H5AC_dest_func_t)H5EA__cache_hdr_dest,
(H5AC_clear_func_t)H5EA__cache_hdr_clear,
(H5AC_size_func_t)H5EA__cache_hdr_size,
}};
/* H5EA index block inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_EARRAY_IBLOCK[1] = {{
H5AC_EARRAY_IBLOCK_ID,
(H5AC_load_func_t)H5EA__cache_iblock_load,
(H5AC_flush_func_t)H5EA__cache_iblock_flush,
(H5AC_dest_func_t)H5EA__cache_iblock_dest,
(H5AC_clear_func_t)H5EA__cache_iblock_clear,
(H5AC_size_func_t)H5EA__cache_iblock_size,
}};
/* H5EA data block inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_EARRAY_DBLOCK[1] = {{
H5AC_EARRAY_DBLOCK_ID,
(H5AC_load_func_t)H5EA__cache_dblock_load,
(H5AC_flush_func_t)H5EA__cache_dblock_flush,
(H5AC_dest_func_t)H5EA__cache_dblock_dest,
(H5AC_clear_func_t)H5EA__cache_dblock_clear,
(H5AC_size_func_t)H5EA__cache_dblock_size,
}};
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5EA__cache_hdr_load
*
* Purpose: Loads an extensible array header from the disk.
*
* Return: Success: Pointer to a new extensible array
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Aug 26 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
H5EA_hdr_t *, NULL, NULL,
H5EA__cache_hdr_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, const void *_cls,
void UNUSED *udata2))
/* Local variables */
const H5EA_class_t *cls = (const H5EA_class_t *)_cls; /* Extensible array class */
H5EA_hdr_t *hdr = NULL; /* Extensible array info */
size_t size; /* Header size */
H5WB_t *wb = NULL; /* Wrapped buffer for header data */
uint8_t hdr_buf[H5EA_HDR_BUF_SIZE]; /* Buffer for header */
uint8_t *buf; /* Pointer to header buffer */
const uint8_t *p; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
/* Check arguments */
HDassert(f);
HDassert(H5F_addr_defined(addr));
/* Allocate space for the extensible array data structure */
if(NULL == (hdr = H5EA__hdr_alloc(f, cls)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array shared header")
/* Set the extensible array header's address */
hdr->addr = addr;
/* Wrap the local buffer for serialized info */
if(NULL == (wb = H5WB_wrap(hdr_buf, sizeof(hdr_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the 'base' size of the extensible array header on disk */
size = H5EA_HEADER_SIZE(hdr);
/* Get a pointer to a buffer that's large enough for serialized header */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Read header from disk */
if(H5F_block_read(f, H5FD_MEM_EARRAY_HDR, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_READERROR, "can't read extensible array header")
/* Get temporary pointer to serialized header */
p = buf;
/* Magic number */
if(HDmemcmp(p, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC))
H5E_THROW(H5E_BADVALUE, "wrong extensible array header signature")
p += H5_SIZEOF_MAGIC;
/* Version */
if(*p++ != H5EA_HDR_VERSION)
H5E_THROW(H5E_VERSION, "wrong extensible array header version")
/* Extensible array type */
if(*p++ != (uint8_t)cls->id)
H5E_THROW(H5E_BADTYPE, "incorrect extensible array class")
/* General array creation/configuration information */
hdr->cparam.raw_elmt_size = *p++; /* Element size in file (in bytes) */
hdr->cparam.max_nelmts_bits = *p++; /* Log2(Max. # of elements in array) - i.e. # of bits needed to store max. # of elements */
hdr->cparam.idx_blk_elmts = *p++; /* # of elements to store in index block */
hdr->cparam.data_blk_min_elmts = *p++; /* Min. # of elements per data block */
hdr->cparam.sup_blk_min_data_ptrs = *p++; /* Min. # of data block pointers for a super block */
/* Internal information */
H5F_addr_decode(f, &p, &hdr->idx_blk_addr); /* Address of index block */
H5F_DECODE_LENGTH(f, p, hdr->stats.max_idx_set); /* Max. index set (+1) */
H5F_DECODE_LENGTH(f, p, hdr->stats.nsuper_blks); /* Number of super blocks created */
H5F_DECODE_LENGTH(f, p, hdr->stats.ndata_blks); /* Number of data blocks created */
H5F_DECODE_LENGTH(f, p, hdr->stats.nelmts); /* Number of elements 'realized' */
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(p - buf) == (size - H5EA_SIZEOF_CHKSUM));
/* Compute checksum on entire header */
/* (including the filter information, if present) */
computed_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32DECODE(p, stored_chksum);
/* Sanity check */
HDassert((size_t)(p - buf) == size);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for extensible array header")
/* Finish initializing extensible array header */
if(H5EA__hdr_init(hdr) < 0)
H5E_THROW(H5E_CANTINIT, "initialization failed for extensible array header")
HDassert(hdr->size == size);
/* Set return value */
ret_value = hdr;
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
if(!ret_value)
if(hdr && H5EA__cache_hdr_dest(f, hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array header")
END_FUNC(STATIC) /* end H5EA__cache_hdr_load() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_hdr_flush
*
* Purpose: Flushes a dirty extensible array header to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Aug 26 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_hdr_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr,
H5EA_hdr_t *hdr, unsigned UNUSED * flags_ptr))
H5WB_t *wb = NULL; /* Wrapped buffer for header data */
uint8_t hdr_buf[H5EA_HDR_BUF_SIZE]; /* Buffer for header */
/* check arguments */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(hdr);
if(hdr->cache_info.is_dirty) {
uint8_t *buf; /* Temporary raw data buffer */
uint8_t *p; /* Pointer into raw data buffer */
size_t size; /* Header size on disk */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* Wrap the local buffer for serialized header info */
if(NULL == (wb = H5WB_wrap(hdr_buf, sizeof(hdr_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the size of the array header on disk */
size = hdr->size;
/* Get a pointer to a buffer that's large enough for serialized header */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Get temporary pointer to serialized header */
p = buf;
/* Magic number */
HDmemcpy(p, H5EA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC);
p += H5_SIZEOF_MAGIC;
/* Version # */
*p++ = H5EA_HDR_VERSION;
/* Extensible array type */
*p++ = hdr->cparam.cls->id;
/* General array creation/configuration information */
*p++ = hdr->cparam.raw_elmt_size; /* Element size in file (in bytes) */
*p++ = hdr->cparam.max_nelmts_bits; /* Log2(Max. # of elements in array) - i.e. # of bits needed to store max. # of elements */
*p++ = hdr->cparam.idx_blk_elmts; /* # of elements to store in index block */
*p++ = hdr->cparam.data_blk_min_elmts; /* Min. # of elements per data block */
*p++ = hdr->cparam.sup_blk_min_data_ptrs; /* Min. # of data block pointers for a super block */
/* Internal information */
H5F_addr_encode(f, &p, hdr->idx_blk_addr); /* Address of index block */
H5F_ENCODE_LENGTH(f, p, hdr->stats.max_idx_set); /* Max. index set (+1) */
H5F_ENCODE_LENGTH(f, p, hdr->stats.nsuper_blks); /* Number of super blocks created */
H5F_ENCODE_LENGTH(f, p, hdr->stats.ndata_blks); /* Number of data blocks created */
H5F_ENCODE_LENGTH(f, p, hdr->stats.nelmts); /* Number of elements 'realized' */
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32ENCODE(p, metadata_chksum);
/* Write the array header. */
HDassert((size_t)(p - buf) == size);
if(H5F_block_write(f, H5FD_MEM_EARRAY_HDR, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_WRITEERROR, "unable to save extensible array header to disk")
hdr->cache_info.is_dirty = FALSE;
} /* end if */
if(destroy)
if(H5EA__cache_hdr_dest(f, hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array header")
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
END_FUNC(STATIC) /* end H5EA__cache_hdr_flush() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_hdr_clear
*
* Purpose: Mark a extensible array header in memory as non-dirty.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Aug 26 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_hdr_clear(H5F_t *f, H5EA_hdr_t *hdr, hbool_t destroy))
/* Sanity check */
HDassert(hdr);
/* Reset the dirty flag. */
hdr->cache_info.is_dirty = FALSE;
if(destroy)
if(H5EA__cache_hdr_dest(f, hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array header")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_hdr_clear() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_hdr_size
*
* Purpose: Compute the size in bytes of a extensible array header
* on disk, and return it in *size_ptr. On failure,
* the value of *size_ptr is undefined.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Aug 26 2008
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5EA__cache_hdr_size(const H5F_t UNUSED *f, const H5EA_hdr_t *hdr,
size_t *size_ptr))
/* Sanity check */
HDassert(f);
HDassert(hdr);
HDassert(size_ptr);
/* Set size value */
*size_ptr = hdr->size;
END_FUNC(STATIC) /* end H5EA__cache_hdr_size() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_hdr_dest
*
* Purpose: Destroys an extensible array header in memory.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Aug 26 2008
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_hdr_dest(H5F_t UNUSED *f, H5EA_hdr_t *hdr))
/* Check arguments */
HDassert(hdr);
/* Release the extensible array header */
if(H5EA__hdr_dest(hdr) < 0)
H5E_THROW(H5E_CANTFREE, "can't free extensible array header")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_hdr_dest() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_iblock_load
*
* Purpose: Loads an extensible array index block from the disk.
*
* Return: Success: Pointer to a new extensible array index block
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 9 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
H5EA_iblock_t *, NULL, NULL,
H5EA__cache_iblock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr,
const void UNUSED *udata1, void *_hdr))
/* Local variables */
H5EA_hdr_t *hdr = (H5EA_hdr_t *)_hdr; /* Shared extensible array information */
H5EA_iblock_t *iblock = NULL; /* Index block info */
size_t size; /* Index block size */
H5WB_t *wb = NULL; /* Wrapped buffer for index block data */
uint8_t iblock_buf[H5EA_IBLOCK_BUF_SIZE]; /* Buffer for index block */
uint8_t *buf; /* Pointer to index block buffer */
const uint8_t *p; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
/* Sanity check */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(hdr);
/* Allocate the extensible array index block */
if(NULL == (iblock = H5EA__iblock_alloc(hdr)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array index block")
/* Set the extensible array index block's address */
iblock->addr = addr;
/* Wrap the local buffer for serialized info */
if(NULL == (wb = H5WB_wrap(iblock_buf, sizeof(iblock_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the size of the extensible array index block on disk */
size = H5EA_IBLOCK_SIZE(iblock);
/* Get a pointer to a buffer that's large enough for serialized info */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Read index block from disk */
if(H5F_block_read(f, H5FD_MEM_EARRAY_IBLOCK, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_READERROR, "can't read extensible array index block")
/* Get temporary pointer to serialized header */
p = buf;
/* Magic number */
if(HDmemcmp(p, H5EA_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC))
H5E_THROW(H5E_BADVALUE, "wrong extensible array index block signature")
p += H5_SIZEOF_MAGIC;
/* Version */
if(*p++ != H5EA_IBLOCK_VERSION)
H5E_THROW(H5E_VERSION, "wrong extensible array index block version")
/* Extensible array type */
if(*p++ != (uint8_t)hdr->cparam.cls->id)
H5E_THROW(H5E_BADTYPE, "incorrect extensible array class")
/* Internal information */
/* Decode elements in index block */
if(hdr->cparam.idx_blk_elmts > 0) {
/* Convert from raw elements on disk into native elements in memory */
if((hdr->cparam.cls->decode)(p, iblock->elmts, (size_t)hdr->cparam.idx_blk_elmts) < 0)
H5E_THROW(H5E_CANTDECODE, "can't decode extensible array index elements")
p += (hdr->cparam.idx_blk_elmts * hdr->cparam.raw_elmt_size);
} /* end if */
/* Decode data block addresses in index block */
if(iblock->ndblk_addrs > 0) {
size_t u; /* Local index variable */
/* Decode addresses of data blocks in index block */
for(u = 0; u < iblock->ndblk_addrs; u++)
H5F_addr_decode(f, &p, &iblock->dblk_addrs[u]);
} /* end if */
/* Decode super block addresses in index block */
if(iblock->nsblk_addrs > 0) {
size_t u; /* Local index variable */
/* Decode addresses of super blocks in index block */
for(u = 0; u < iblock->nsblk_addrs; u++)
H5F_addr_decode(f, &p, &iblock->sblk_addrs[u]);
} /* end if */
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(p - buf) == (size - H5EA_SIZEOF_CHKSUM));
/* Save the index block's size */
iblock->size = size;
/* Compute checksum on index block */
computed_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32DECODE(p, stored_chksum);
/* Sanity check */
HDassert((size_t)(p - buf) == iblock->size);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for extensible array index block")
/* Set return value */
ret_value = iblock;
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
if(!ret_value)
if(iblock && H5EA__cache_iblock_dest(f, iblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
END_FUNC(STATIC) /* end H5EA__cache_iblock_load() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_iblock_flush
*
* Purpose: Flushes a dirty extensible array index block to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 9 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_iblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr,
H5EA_iblock_t *iblock, unsigned UNUSED * flags_ptr))
/* Local variables */
H5WB_t *wb = NULL; /* Wrapped buffer for serializing data */
uint8_t ser_buf[H5EA_IBLOCK_BUF_SIZE]; /* Serialization buffer */
/* Sanity check */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(iblock);
HDassert(iblock->hdr);
if(iblock->cache_info.is_dirty) {
uint8_t *buf; /* Temporary raw data buffer */
uint8_t *p; /* Pointer into raw data buffer */
size_t size; /* Index block size on disk */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* Wrap the local buffer for serialized info */
if(NULL == (wb = H5WB_wrap(ser_buf, sizeof(ser_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the size of the index block on disk */
size = iblock->size;
/* Get a pointer to a buffer that's large enough for serialized info */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Get temporary pointer to serialized info */
p = buf;
/* Magic number */
HDmemcpy(p, H5EA_IBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC);
p += H5_SIZEOF_MAGIC;
/* Version # */
*p++ = H5EA_IBLOCK_VERSION;
/* Extensible array type */
*p++ = iblock->hdr->cparam.cls->id;
/* Internal information */
/* Encode elements in index block */
if(iblock->hdr->cparam.idx_blk_elmts > 0) {
/* Convert from native elements in memory into raw elements on disk */
if((iblock->hdr->cparam.cls->encode)(p, iblock->elmts, (size_t)iblock->hdr->cparam.idx_blk_elmts) < 0)
H5E_THROW(H5E_CANTENCODE, "can't encode extensible array index elements")
p += (iblock->hdr->cparam.idx_blk_elmts * iblock->hdr->cparam.raw_elmt_size);
} /* end if */
/* Encode data block addresses in index block */
if(iblock->ndblk_addrs > 0) {
size_t u; /* Local index variable */
/* Encode addresses of data blocks in index block */
for(u = 0; u < iblock->ndblk_addrs; u++)
H5F_addr_encode(f, &p, iblock->dblk_addrs[u]);
} /* end if */
/* Encode data block addresses in index block */
if(iblock->nsblk_addrs > 0) {
size_t u; /* Local index variable */
/* Encode addresses of super blocks in index block */
for(u = 0; u < iblock->nsblk_addrs; u++)
H5F_addr_encode(f, &p, iblock->sblk_addrs[u]);
} /* end if */
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32ENCODE(p, metadata_chksum);
/* Write the index block */
HDassert((size_t)(p - buf) == size);
if(H5F_block_write(f, H5FD_MEM_EARRAY_IBLOCK, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_WRITEERROR, "unable to save extensible array index block to disk")
iblock->cache_info.is_dirty = FALSE;
} /* end if */
if(destroy)
if(H5EA__cache_iblock_dest(f, iblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
END_FUNC(STATIC) /* end H5EA__cache_iblock_flush() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_iblock_clear
*
* Purpose: Mark a extensible array index block in memory as non-dirty.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sept 9 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_iblock_clear(H5F_t *f, H5EA_iblock_t *iblock, hbool_t destroy))
/* Sanity check */
HDassert(iblock);
/* Reset the dirty flag */
iblock->cache_info.is_dirty = FALSE;
if(destroy)
if(H5EA__cache_iblock_dest(f, iblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array index block")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_iblock_clear() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_iblock_size
*
* Purpose: Compute the size in bytes of a extensible array index block
* on disk, and return it in *size_ptr. On failure,
* the value of *size_ptr is undefined.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sept 9 2008
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5EA__cache_iblock_size(const H5F_t UNUSED *f, const H5EA_iblock_t *iblock,
size_t *size_ptr))
/* Sanity check */
HDassert(f);
HDassert(iblock);
HDassert(size_ptr);
/* Set size value */
*size_ptr = iblock->size;
END_FUNC(STATIC) /* end H5EA__cache_iblock_size() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_iblock_dest
*
* Purpose: Destroys an extensible array index block in memory.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 9 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_iblock_dest(H5F_t *f, H5EA_iblock_t *iblock))
/* Sanity check */
HDassert(iblock);
/* Release the index block */
if(H5EA__iblock_dest(f, iblock) < 0)
H5E_THROW(H5E_CANTFREE, "can't free extensible array index block")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_iblock_dest() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_dblock_load
*
* Purpose: Loads an extensible array data block from the disk.
*
* Return: Success: Pointer to a new extensible array data block
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 16 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
H5EA_dblock_t *, NULL, NULL,
H5EA__cache_dblock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr,
const void *_nelmts, void *_hdr))
/* Local variables */
H5EA_hdr_t *hdr = (H5EA_hdr_t *)_hdr; /* Shared extensible array information */
const size_t *nelmts = (const size_t *)_nelmts; /* Number of elements in data block */
H5EA_dblock_t *dblock = NULL; /* Data block info */
size_t size; /* Data block size */
H5WB_t *wb = NULL; /* Wrapped buffer for data block data */
uint8_t dblock_buf[H5EA_DBLOCK_BUF_SIZE]; /* Buffer for data block */
uint8_t *buf; /* Pointer to data block buffer */
const uint8_t *p; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
/* Sanity check */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(nelmts && *nelmts > 0);
HDassert(hdr);
/* Allocate the extensible array data block */
if(NULL == (dblock = H5EA__dblock_alloc(hdr, *nelmts)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for extensible array data block")
/* Set the extensible array data block's information */
dblock->addr = addr;
/* Wrap the local buffer for serialized info */
if(NULL == (wb = H5WB_wrap(dblock_buf, sizeof(dblock_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the size of the extensible array data block on disk */
size = H5EA_DBLOCK_SIZE(dblock);
/* Get a pointer to a buffer that's large enough for serialized info */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Read data block from disk */
if(H5F_block_read(f, H5FD_MEM_EARRAY_DBLOCK, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_READERROR, "can't read extensible array data block")
/* Get temporary pointer to serialized header */
p = buf;
/* Magic number */
if(HDmemcmp(p, H5EA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC))
H5E_THROW(H5E_BADVALUE, "wrong extensible array data block signature")
p += H5_SIZEOF_MAGIC;
/* Version */
if(*p++ != H5EA_DBLOCK_VERSION)
H5E_THROW(H5E_VERSION, "wrong extensible array data block version")
/* Extensible array type */
if(*p++ != (uint8_t)hdr->cparam.cls->id)
H5E_THROW(H5E_BADTYPE, "incorrect extensible array class")
/* Internal information */
/* Decode elements in data block */
/* Convert from raw elements on disk into native elements in memory */
if((hdr->cparam.cls->decode)(p, dblock->elmts, *nelmts) < 0)
H5E_THROW(H5E_CANTDECODE, "can't decode extensible array data elements")
p += (*nelmts * hdr->cparam.raw_elmt_size);
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(p - buf) == (size - H5EA_SIZEOF_CHKSUM));
/* Save the data block's size */
dblock->size = size;
/* Compute checksum on data block */
computed_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32DECODE(p, stored_chksum);
/* Sanity check */
HDassert((size_t)(p - buf) == dblock->size);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for extensible array data block")
/* Set return value */
ret_value = dblock;
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
if(!ret_value)
if(dblock && H5EA__cache_dblock_dest(f, dblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array data block")
END_FUNC(STATIC) /* end H5EA__cache_dblock_load() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_dblock_flush
*
* Purpose: Flushes a dirty extensible array data block to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 18 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_dblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr,
H5EA_dblock_t *dblock, unsigned UNUSED * flags_ptr))
/* Local variables */
H5WB_t *wb = NULL; /* Wrapped buffer for serializing data */
uint8_t ser_buf[H5EA_DBLOCK_BUF_SIZE]; /* Serialization buffer */
/* Sanity check */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(dblock);
HDassert(dblock->hdr);
if(dblock->cache_info.is_dirty) {
uint8_t *buf; /* Temporary raw data buffer */
uint8_t *p; /* Pointer into raw data buffer */
size_t size; /* Index block size on disk */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* Wrap the local buffer for serialized info */
if(NULL == (wb = H5WB_wrap(ser_buf, sizeof(ser_buf))))
H5E_THROW(H5E_CANTINIT, "can't wrap buffer")
/* Compute the size of the data block on disk */
size = dblock->size;
/* Get a pointer to a buffer that's large enough for serialized info */
if(NULL == (buf = (uint8_t *)H5WB_actual(wb, size)))
H5E_THROW(H5E_CANTGET, "can't get actual buffer")
/* Get temporary pointer to serialized info */
p = buf;
/* Magic number */
HDmemcpy(p, H5EA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC);
p += H5_SIZEOF_MAGIC;
/* Version # */
*p++ = H5EA_DBLOCK_VERSION;
/* Extensible array type */
*p++ = dblock->hdr->cparam.cls->id;
/* Internal information */
/* Encode elements in data block */
/* Convert from native elements in memory into raw elements on disk */
if((dblock->hdr->cparam.cls->encode)(p, dblock->elmts, dblock->nelmts) < 0)
H5E_THROW(H5E_CANTENCODE, "can't encode extensible array data elements")
p += (dblock->nelmts * dblock->hdr->cparam.raw_elmt_size);
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(buf, (size_t)(p - buf), 0);
/* Metadata checksum */
UINT32ENCODE(p, metadata_chksum);
/* Write the index block */
HDassert((size_t)(p - buf) == size);
if(H5F_block_write(f, H5FD_MEM_EARRAY_DBLOCK, addr, size, dxpl_id, buf) < 0)
H5E_THROW(H5E_WRITEERROR, "unable to save extensible array data block to disk")
dblock->cache_info.is_dirty = FALSE;
} /* end if */
if(destroy)
if(H5EA__cache_dblock_dest(f, dblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array data block")
CATCH
/* Release resources */
if(wb && H5WB_unwrap(wb) < 0)
H5E_THROW(H5E_CLOSEERROR, "can't close wrapped buffer")
END_FUNC(STATIC) /* end H5EA__cache_dblock_flush() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_dblock_clear
*
* Purpose: Mark a extensible array data block in memory as non-dirty.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sept 18 2008
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_dblock_clear(H5F_t *f, H5EA_dblock_t *dblock, hbool_t destroy))
/* Sanity check */
HDassert(dblock);
/* Reset the dirty flag */
dblock->cache_info.is_dirty = FALSE;
if(destroy)
if(H5EA__cache_dblock_dest(f, dblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy extensible array data block")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_dblock_clear() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_dblock_size
*
* Purpose: Compute the size in bytes of a extensible array data block
* on disk, and return it in *size_ptr. On failure,
* the value of *size_ptr is undefined.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sept 18 2008
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5EA__cache_dblock_size(const H5F_t UNUSED *f, const H5EA_dblock_t *dblock,
size_t *size_ptr))
/* Sanity check */
HDassert(f);
HDassert(dblock);
HDassert(size_ptr);
/* Set size value */
*size_ptr = dblock->size;
END_FUNC(STATIC) /* end H5EA__cache_dblock_size() */
/*-------------------------------------------------------------------------
* Function: H5EA__cache_dblock_dest
*
* Purpose: Destroys an extensible array data block in memory.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 18 2008
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5EA__cache_dblock_dest(H5F_t *f, H5EA_dblock_t *dblock))
/* Sanity check */
HDassert(dblock);
/* Release the data block */
if(H5EA__dblock_dest(f, dblock) < 0)
H5E_THROW(H5E_CANTFREE, "can't free extensible array data block")
CATCH
END_FUNC(STATIC) /* end H5EA__cache_dblock_dest() */
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