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|
/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
*
* MODIFICATIONS
* Robb Matzke, 30 Aug 1997
* Added `ERRORS' fields to function prologues.
*
****************************************************************************/
#ifdef RCSID
static char RcsId[] = "@(#)$Revision$";
#endif
/* $Id$ */
/* Predefined file drivers */
#include <H5FDcore.h> /*temporary in-memory files */
#include <H5FDfamily.h> /*family of files */
#include <H5FDmpio.h> /*MPI-2 I/O */
#include <H5FDgass.h> /*GASS I/O */
#include <H5FDdpss.h> /*Grid Storage I/O */
#include <H5FDmulti.h> /*multiple files partitioned by mem usage */
#include <H5FDsec2.h> /*Posix unbuffered I/O */
#include <H5FDstdio.h> /* Standard C buffered I/O */
/* Packages needed by this file... */
#include <H5private.h> /*library functions */
#include <H5Aprivate.h> /*attributes */
#include <H5Dprivate.h> /*datasets */
#include <H5Iprivate.h> /*object IDs */
#include <H5ACprivate.h> /*cache */
#include <H5Eprivate.h> /*error handling */
#include <H5Fprivate.h> /*file access */
#include <H5FDprivate.h> /*file driver */
#include <H5Gprivate.h> /*symbol tables */
#include <H5MMprivate.h> /*core memory management */
#include <H5Pprivate.h> /*property lists */
#include <H5Tprivate.h> /*data types */
#define PABLO_MASK H5F_mask
/*
* Define the default file creation property list.
*/
const H5F_create_t H5F_create_dflt = {
0, /* Default user-block size */
4, /* Default 1/2 rank for symtab leaf nodes */
{ /* Default 1/2 rank for btree intern nodes */
16, /* Symbol table internal nodes */
32, /* Indexed storage internal nodes */
0, /* unused */
0, /* unused */
0, /* unused */
0, /* unused */
0, /* unused */
0, /* unused */
},
sizeof(haddr_t), /* Default offset size */
sizeof(hsize_t), /* Default length size */
HDF5_BOOTBLOCK_VERSION, /* Current Boot-Block version # */
HDF5_FREESPACE_VERSION, /* Current Free-Space info version # */
HDF5_OBJECTDIR_VERSION, /* Current Object Directory info version # */
HDF5_SHAREDHEADER_VERSION, /* Current Shared-Header format version # */
};
/*
* Define the default file access property list. The template is initialized
* by H5F_init_interface().
*/
H5F_access_t H5F_access_dflt;
/* Default data transfer property list */
/* Not const anymore before some of the VFL drivers modify this struct - QAK */
H5F_xfer_t H5F_xfer_dflt = {
1024*1024, /*Temporary buffer size */
NULL, /*Type conversion buffer or NULL */
NULL, /*Background buffer or NULL */
H5T_BKG_NO, /*Type of background buffer needed */
{0.1, 0.5, 0.9}, /*B-tree node splitting ratios */
#ifndef H5_HAVE_PARALLEL
1, /*Cache the hyperslab blocks */
#else
0, /*Don't cache the hyperslab blocks */
#endif /* H5_HAVE_PARALLEL */
0, /*No limit on hyperslab block size to cache */
NULL, /*Use malloc() for VL data allocations */
NULL, /*No information needed for malloc() calls */
NULL, /*Use free() for VL data frees */
NULL, /*No information needed for free() calls */
-2, /*See H5Pget_driver() */
NULL, /*No file driver-specific information yet */
#ifdef COALESCE_READS
0, /*coalesce single reads into a read */
/*transaction */
#endif
};
/*
* Define the default mount property list.
*/
const H5F_mprop_t H5F_mount_dflt = {
FALSE, /* Absolute symlinks are wrt mount root */
};
/* Interface initialization */
static intn interface_initialize_g = 0;
#define INTERFACE_INIT H5F_init_interface
static herr_t H5F_init_interface(void);
/* PRIVATE PROTOTYPES */
static H5F_t *H5F_new(H5F_file_t *shared, hid_t fcpl_id, hid_t fapl_id);
static herr_t H5F_dest(H5F_t *f);
static herr_t H5F_flush(H5F_t *f, H5F_scope_t scope, hbool_t invalidate,
hbool_t alloc_only);
static haddr_t H5F_locate_signature(H5FD_t *file);
static intn H5F_flush_all_cb(H5F_t *f, const void *_invalidate);
/*-------------------------------------------------------------------------
* Function: H5F_init
*
* Purpose: Initialize the interface from some other layer.
*
* Return: Success: non-negative
*
* Failure: negative
*
* Programmer: Robb Matzke
* Wednesday, December 16, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5F_init(void)
{
FUNC_ENTER(H5F_init, FAIL);
/* FUNC_ENTER() does all the work */
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_init_interface
*
* Purpose: Initialize interface-specific information.
*
* Return: Success: non-negative
*
* Failure: negative
*
* Programmer: Robb Matzke
* Friday, November 20, 1998
*
* Modifications:
* Robb Matzke, 4 Aug 1997
* Changed pablo mask from H5_mask to H5F_mask for the FUNC_LEAVE call.
* It was already H5F_mask for the PABLO_TRACE_ON call.
*
* Kim Yates, 1998-08-16
* Added .disp, .btype, .ftype to H5F_access_t.
*
* Robb Matzke, 1999-02-19
* Added initialization for the H5I_FILE_CLOSING ID group.
*-------------------------------------------------------------------------
*/
static herr_t
H5F_init_interface(void)
{
herr_t ret_value = SUCCEED;
herr_t status;
FUNC_ENTER(H5F_init_interface, FAIL);
#ifdef H5_HAVE_PARALLEL
{
/* Allow MPI buf-and-file-type optimizations? */
const char *s = HDgetenv ("HDF5_MPI_1_METAWRITE");
if (s && HDisdigit(*s)) {
H5_mpi_1_metawrite_g = (int)HDstrtol (s, NULL, 0);
}
}
#endif
/*
* Initialize the atom group for the file IDs. There are two groups:
* the H5I_FILE group contains all the ID's for files which are currently
* open at the public API level while the H5I_FILE_CLOSING group contains
* ID's for files for which the application has called H5Fclose() but
* which are pending completion because there are object headers still
* open within the file.
*/
if (H5I_init_group(H5I_FILE, H5I_FILEID_HASHSIZE, 0,
(H5I_free_t)H5F_close)<0 ||
H5I_init_group(H5I_FILE_CLOSING, H5I_FILEID_HASHSIZE, 0,
(H5I_free_t)H5F_close)<0) {
HRETURN_ERROR (H5E_FILE, H5E_CANTINIT, FAIL,
"unable to initialize interface");
}
/* Register predefined file drivers */
H5E_BEGIN_TRY {
if ((status=H5FD_SEC2)<0) goto end_registration;
if ((status=H5FD_STDIO)<0) goto end_registration;
if ((status=H5FD_FAMILY)<0) goto end_registration;
#ifdef H5_HAVE_GASS
if ((status=H5FD_GASS)<0) goto end_registration;
#endif
#ifdef H5_HAVE_GRIDSTORAGE
if ((status=H5FD_DPSS)<0) goto end_registration;
#endif
if ((status=H5FD_CORE)<0) goto end_registration;
if ((status=H5FD_MULTI)<0) goto end_registration;
#ifdef H5_HAVE_PARALLEL
if ((status=H5FD_MPIO)<0) goto end_registration;
#endif
end_registration: ;
} H5E_END_TRY;
if (status<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL,
"file driver registration failed");
}
/* Initialize the default file access property list */
H5F_access_dflt.mdc_nelmts = H5AC_NSLOTS;
H5F_access_dflt.rdcc_nelmts = 521;
H5F_access_dflt.rdcc_nbytes = 1024*1024; /*1MB*/
H5F_access_dflt.rdcc_w0 = 0.75; /*preempt fully read chunks*/
H5F_access_dflt.threshold = 1; /*alignment applies to everything*/
H5F_access_dflt.alignment = 1; /*no alignment*/
H5F_access_dflt.gc_ref = 0; /*don't garbage-collect references*/
H5F_access_dflt.driver_id = H5FD_SEC2; /*default driver*/
H5F_access_dflt.driver_info = NULL; /*driver file access properties*/
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_term_interface
*
* Purpose: Terminate this interface: free all memory and reset global
* variables to their initial values. Release all ID groups
* associated with this interface.
*
* Return: Success: Positive if anything was done that might
* have affected other interfaces; zero
* otherwise.
*
* Failure: Never fails.
*
* Programmer: Robb Matzke
* Friday, February 19, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
intn
H5F_term_interface(void)
{
intn n = 0;
if (interface_initialize_g) {
if ((n=H5I_nmembers(H5I_FILE))) {
H5F_close_all();
} else if (0==(n=H5I_nmembers(H5I_FILE_CLOSING))) {
H5I_destroy_group(H5I_FILE);
H5I_destroy_group(H5I_FILE_CLOSING);
interface_initialize_g = 0;
n = 1; /*H5I*/
}
}
return n;
}
/*-------------------------------------------------------------------------
* Function: H5F_flush_all_cb
*
* Purpose: Callback function for H5F_flush_all().
*
* Return: Always returns zero.
*
* Programmer: Robb Matzke
* Friday, February 19, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5F_flush_all_cb(H5F_t *f, const void *_invalidate)
{
hbool_t invalidate = *((const hbool_t*)_invalidate);
H5F_flush(f, H5F_SCOPE_LOCAL, invalidate, FALSE);
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5F_flush_all
*
* Purpose: Flush all open files. If INVALIDATE is true then also remove
* everything from the cache.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Thursday, February 18, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5F_flush_all(hbool_t invalidate)
{
FUNC_ENTER(H5F_flush_all, FAIL);
H5I_search(H5I_FILE, (H5I_search_func_t)H5F_flush_all_cb,
(void*)&invalidate);
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_close_all
*
* Purpose: Close all open files. Any file which has open object headers
* will be moved from the H5I_FILE group to the H5I_FILE_CLOSING
* group.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Friday, February 19, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5F_close_all(void)
{
FUNC_ENTER(H5F_close_all, FAIL);
if (H5I_clear_group(H5I_FILE, FALSE)<0) {
HRETURN_ERROR(H5E_FILE, H5E_CLOSEERROR, FAIL,
"unable to close one or more files");
}
FUNC_LEAVE(SUCCEED);
}
/*--------------------------------------------------------------------------
NAME
H5F_encode_length_unusual -- encode an unusual length size
USAGE
void H5F_encode_length_unusual(f, p, l)
const H5F_t *f; IN: pointer to the file record
uint8_t **p; IN: pointer to buffer pointer to encode length in
uint8_t *l; IN: pointer to length to encode
ERRORS
RETURNS
none
DESCRIPTION
Encode non-standard (i.e. not 2, 4 or 8-byte) lengths in file meta-data.
--------------------------------------------------------------------------*/
void
H5F_encode_length_unusual(const H5F_t *f, uint8_t **p, uint8_t *l)
{
intn i = (intn)H5F_SIZEOF_SIZE(f)-1;
#ifdef WORDS_BIGENDIAN
/*
* For non-little-endian platforms, encode each byte in memory backwards.
*/
for (/*void*/; i>=0; i--, (*p)++)*(*p) = *(l+i);
#else
/* platform has little-endian integers */
HDmemcpy(*p,l,(size_t)(i+1));
*p+=(i+1);
#endif
}
/*-------------------------------------------------------------------------
* Function: H5Fget_create_plist
*
* Purpose: Get an atom for a copy of the file-creation property list for
* this file. This function returns an atom with a copy of the
* properties used to create a file.
*
* Return: Success: template ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
* Modifications:
*
* Robb Matzke, 18 Feb 1998
* Calls H5P_copy() to copy the property list and H5P_close() to free
* that property list if an error occurs.
*
*-------------------------------------------------------------------------
*/
hid_t
H5Fget_create_plist(hid_t file_id)
{
H5F_t *file = NULL;
hid_t ret_value = FAIL;
H5F_create_t *plist = NULL;
FUNC_ENTER(H5Fget_create_plist, FAIL);
H5TRACE1("i","i",file_id);
/* check args */
if (H5I_FILE!=H5I_get_type(file_id) || NULL==(file=H5I_object(file_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
/* Create the property list object to return */
if (NULL==(plist=H5P_copy(H5P_FILE_CREATE, file->shared->fcpl))) {
HRETURN_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL,
"unable to copy file creation properties");
}
/* Create an atom */
if ((ret_value = H5P_create(H5P_FILE_CREATE, plist)) < 0) {
H5P_close(H5P_FILE_CREATE, plist);
HRETURN_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL,
"unable to register property list");
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Fget_access_plist
*
* Purpose: Returns a copy of the file access property list of the
* specified file.
*
* Return: Success: Object ID for a copy of the file access
* property list.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Wednesday, February 18, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5Fget_access_plist(hid_t file_id)
{
H5F_t *f = NULL;
H5F_access_t *fapl=NULL, _fapl;
hid_t ret_value = FAIL;
FUNC_ENTER(H5Fget_access_plist, FAIL);
H5TRACE1("i","i",file_id);
/* Check args */
if (H5I_FILE!=H5I_get_type(file_id) || NULL==(f=H5I_object(file_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
/* Initialize the property list */
HDmemset(&_fapl, 0, sizeof _fapl);
_fapl.mdc_nelmts = f->shared->mdc_nelmts;
_fapl.rdcc_nelmts = f->shared->rdcc_nelmts;
_fapl.rdcc_nbytes = f->shared->rdcc_nbytes;
_fapl.rdcc_w0 = f->shared->rdcc_w0;
_fapl.threshold = f->shared->threshold;
_fapl.alignment = f->shared->alignment;
_fapl.gc_ref = f->shared->gc_ref;
_fapl.driver_id = f->shared->lf->driver_id;
_fapl.driver_info = NULL; /*just for now */
/* Copy properties */
if (NULL==(fapl=H5P_copy(H5P_FILE_ACCESS, &_fapl))) {
HRETURN_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL,
"unable to copy file access properties");
}
/* Get the properties for the file driver */
fapl->driver_info = H5FD_fapl_get(f->shared->lf);
/* Create an atom */
if ((ret_value = H5P_create(H5P_FILE_ACCESS, fapl))<0) {
H5P_close(H5P_FILE_ACCESS, fapl);
HRETURN_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL,
"unable to register property list");
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_equal
*
* Purpose: Compares NEEDLE to a file from the HAYSTACK.
*
* Return: Success: Returns positive if two files are equal,
* zero otherwise.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Monday, August 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5F_equal(void *_haystack, const void *_needle)
{
H5F_t *haystack = (H5F_t*)_haystack;
const H5FD_t *needle = (const H5FD_t*)_needle;
intn retval;
FUNC_ENTER(H5F_equal, FAIL);
retval = (0==H5FD_cmp(haystack->shared->lf, needle));
FUNC_LEAVE(retval);
}
/*-------------------------------------------------------------------------
* Function: H5F_locate_signature
*
* Purpose: Finds the HDF5 boot block signature in a file. The signature
* can appear at address 0, or any power of two beginning with
* 512.
*
* Return: Success: The absolute format address of the signature.
*
* Failure: HADDR_UNDEF
*
* Programmer: Robb Matzke
* Friday, November 7, 1997
*
* Modifications:
* Robb Matzke, 1999-08-02
* Rewritten to use the virtual file layer.
*-------------------------------------------------------------------------
*/
static haddr_t
H5F_locate_signature(H5FD_t *file)
{
haddr_t addr, eoa;
uint8_t buf[H5F_SIGNATURE_LEN];
uintn n, maxpow;
FUNC_ENTER(H5F_locate_signature, HADDR_UNDEF);
/* Find the least N such that 2^N is larger than the file size */
if (HADDR_UNDEF==(addr=H5FD_get_eof(file)) ||
HADDR_UNDEF==(eoa=H5FD_get_eoa(file))) {
HRETURN_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF,
"unable to obtain EOF/EOA value");
}
for (maxpow=0; addr; maxpow++) addr>>=1;
maxpow = MAX(maxpow, 9);
/*
* Search for the file signature at format address zero followed by
* powers of two larger than 9.
*/
for (n=8; n<maxpow; n++) {
addr = (8==n) ? 0 : (haddr_t)1 << n;
if (H5FD_set_eoa(file, addr+H5F_SIGNATURE_LEN)<0) {
HRETURN_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF,
"unable to set EOA value for file signature");
}
if (H5FD_read(file, H5P_DEFAULT, addr, H5F_SIGNATURE_LEN, buf)<0) {
HRETURN_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF,
"unable to read file signature");
}
if (!HDmemcmp(buf, H5F_SIGNATURE, H5F_SIGNATURE_LEN)) break;
}
/*
* If the signature was not found then reset the EOA value and return
* failure.
*/
if (n>=maxpow) {
H5FD_set_eoa(file, eoa);
HRETURN_ERROR(H5E_IO, H5E_CANTINIT, HADDR_UNDEF,
"unable to find a valid file signature");
}
/* Success */
FUNC_LEAVE(addr);
}
/*-------------------------------------------------------------------------
* Function: H5Fis_hdf5
*
* Purpose: Check the file signature to detect an HDF5 file.
*
* Bugs: This function is not robust: it only uses the default file
* driver when attempting to open the file when in fact it
* should use all known file drivers.
*
* Return: Success: TRUE/FALSE
*
* Failure: Negative
*
* Programmer: Unknown
*
* Modifications:
* Robb Matzke, 1999-08-02
* Rewritten to use the virtual file layer.
*-------------------------------------------------------------------------
*/
htri_t
H5Fis_hdf5(const char *name)
{
H5FD_t *file = NULL;
htri_t ret_value = FAIL;
FUNC_ENTER(H5Fis_hdf5, FAIL);
H5TRACE1("b","s",name);
/* Check args and all the boring stuff. */
if (!name || !*name) {
HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "no file name specified");
}
/* Open the file at the virtual file layer */
if (NULL==(file=H5FD_open(name, H5F_ACC_RDONLY, H5P_DEFAULT,
HADDR_UNDEF))) {
HGOTO_ERROR(H5E_IO, H5E_CANTINIT, FAIL, "unable to open file");
}
/* The file is an hdf5 file if the hdf5 file signature can be found */
ret_value = (HADDR_UNDEF!=H5F_locate_signature(file));
done:
/* Close the file */
if (file) H5FD_close(file);
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_new
*
* Purpose: Creates a new file object and initializes it. The
* H5Fopen and H5Fcreate functions then fill in various
* fields. If SHARED is a non-null pointer then the shared info
* to which it points has the reference count incremented.
* Otherwise a new, empty shared info struct is created and
* initialized with the specified file access property list.
*
* Errors:
*
* Return: Success: Ptr to a new file struct.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 18 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static H5F_t *
H5F_new(H5F_file_t *shared, hid_t fcpl_id, hid_t fapl_id)
{
H5F_t *f=NULL, *ret_value=NULL;
intn n;
const H5F_create_t *fcpl=NULL;
const H5F_access_t *fapl=NULL;
FUNC_ENTER(H5F_new, NULL);
if (NULL==(f=H5MM_calloc(sizeof(H5F_t)))) {
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
if (shared) {
f->shared = shared;
} else {
f->shared = H5MM_calloc(sizeof(H5F_file_t));
f->shared->boot_addr = HADDR_UNDEF;
f->shared->base_addr = HADDR_UNDEF;
f->shared->freespace_addr = HADDR_UNDEF;
f->shared->driver_addr = HADDR_UNDEF;
/*
* Copy the file creation and file access property lists into the
* new file handle. We do this early because some values might need
* to change as the file is being opened.
*/
fcpl = (H5P_DEFAULT==fcpl_id)? &H5F_create_dflt : H5I_object(fcpl_id);
if (NULL==(f->shared->fcpl=H5P_copy(H5P_FILE_CREATE, fcpl))) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, NULL,
"unable to copy file creation property list");
}
fapl = (H5P_DEFAULT==fapl_id)? &H5F_access_dflt : H5I_object(fapl_id);
f->shared->mdc_nelmts = fapl->mdc_nelmts;
f->shared->rdcc_nelmts = fapl->rdcc_nelmts;
f->shared->rdcc_nbytes = fapl->rdcc_nbytes;
f->shared->rdcc_w0 = fapl->rdcc_w0;
f->shared->threshold = fapl->threshold;
f->shared->alignment = fapl->alignment;
f->shared->gc_ref = fapl->gc_ref;
#ifdef H5_HAVE_PARALLEL
/*
* Disable cache if file is open using MPIO driver. Parallel
* does not permit caching. (maybe able to relax it for
* read only open.)
*/
if (H5FD_MPIO==fapl->driver_id){
f->shared->rdcc_nbytes = 0;
f->shared->mdc_nelmts = 0;
}
#endif
/*
* Create a meta data cache with the specified number of elements.
* The cache might be created with a different number of elements and
* the access property list should be updated to reflect that.
*/
if ((n=H5AC_create(f, f->shared->mdc_nelmts))<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, NULL,
"unable to create meta data cache");
}
f->shared->mdc_nelmts = n;
/* Create the chunk cache */
H5F_istore_init(f);
}
f->shared->nrefs++;
f->nrefs = 1;
ret_value = f;
done:
if (!ret_value && f) {
if (!shared) H5MM_xfree(f->shared);
H5MM_xfree(f);
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_dest
*
* Purpose: Destroys a file structure. This function flushes the cache
* but doesn't do any other cleanup other than freeing memory
* for the file struct. The shared info for the file is freed
* only when its reference count reaches zero.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 18 1997
*
* Modifications:
*
* Robb Matzke, 1998-10-14
* Nothing happens unless the reference count for the H5F_t goes to
* zero. The reference counts are decremented here.
*
* Robb Matzke, 1999-02-19
* More careful about decrementing reference counts so they don't go
* negative or wrap around to some huge value. Nothing happens if a
* reference count is already zero.
*-------------------------------------------------------------------------
*/
static herr_t
H5F_dest(H5F_t *f)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER(H5F_dest, FAIL);
if (f && 1==f->nrefs) {
if (1==f->shared->nrefs) {
/*
* Do not close the root group since we didn't count it, but free
* the memory associated with it.
*/
H5MM_xfree(f->shared->root_grp);
f->shared->root_grp=NULL;
if (H5AC_dest(f)) {
HERROR(H5E_FILE, H5E_CANTINIT, "problems closing file");
ret_value = FAIL; /*but keep going*/
}
if (H5F_istore_dest (f)<0) {
HERROR(H5E_FILE, H5E_CANTINIT, "problems closing file");
ret_value = FAIL; /*but keep going*/
}
f->shared->cwfs = H5MM_xfree (f->shared->cwfs);
/* Destroy file creation properties */
H5P_close(H5P_FILE_CREATE, f->shared->fcpl);
/* Destroy shared file struct */
if (H5FD_close(f->shared->lf)<0) {
HERROR(H5E_FILE, H5E_CANTINIT, "problems closing file");
ret_value = FAIL; /*but keep going*/
}
f->shared = H5MM_xfree(f->shared);
} else if (f->shared->nrefs>0) {
/*
* There are other references to the shared part of the file.
* Only decrement the reference count.
*/
--f->shared->nrefs;
}
/* Free the non-shared part of the file */
f->name = H5MM_xfree(f->name);
f->mtab.child = H5MM_xfree(f->mtab.child);
f->mtab.nalloc = 0;
H5MM_xfree(f);
} else if (f && f->nrefs>0) {
/*
* There are other references to this file. Only decrement the
* reference count.
*/
--f->nrefs;
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_open
*
* Purpose: Opens (or creates) a file. This function understands the
* following flags which are similar in nature to the Posix
* open(2) flags.
*
* H5F_ACC_RDWR: Open with read/write access. If the file is
* currently open for read-only access then it
* will be reopened. Absence of this flag
* implies read-only access.
*
* H5F_ACC_CREAT: Create a new file if it doesn't exist yet.
* The permissions are 0666 bit-wise AND with
* the current umask. H5F_ACC_WRITE must also
* be specified.
*
* H5F_ACC_EXCL: This flag causes H5F_open() to fail if the
* file already exists.
*
* H5F_ACC_TRUNC: The file is truncated and a new HDF5 superblock
* is written. This operation will fail if the
* file is already open.
*
* Unlinking the file name from the group directed graph while
* the file is opened causes the file to continue to exist but
* one will not be able to upgrade the file from read-only
* access to read-write access by reopening it. Disk resources
* for the file are released when all handles to the file are
* closed. NOTE: This paragraph probably only applies to Unix;
* deleting the file name in other OS's has undefined results.
*
* The CREATE_PARMS argument is optional. A null pointer will
* cause the default file creation parameters to be used.
*
* The ACCESS_PARMS argument is optional. A null pointer will
* cause the default file access parameters to be used.
*
* Return: Success: A new file pointer.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Tuesday, September 23, 1997
*
* Modifications:
* Albert Cheng, 1998-02-05
* Added the access_parms argument to pass down access template
* information.
*
* Robb Matzke, 1998-02-18
* The H5F_access_t changed to allow more generality. The low
* level driver is part of the file access template so the TYPE
* argument has been removed.
*
* Robb Matzke, 1999-08-02
* Rewritten to use the virtual file layer.
*
* Robb Matzke, 1999-08-16
* Added decoding of file driver information block, which uses a
* formerly reserved address slot in the boot block in order to
* be compatible with previous versions of the file format.
*
* Robb Matzke, 1999-08-20
* Optimizations for opening a file. If the driver can't
* determine when two file handles refer to the same file then
* we open the file in one step. Otherwise if the first attempt
* to open the file fails then we skip the second attempt if the
* arguments would be the same.
*-------------------------------------------------------------------------
*/
H5F_t *
H5F_open(const char *name, uintn flags, hid_t fcpl_id, hid_t fapl_id)
{
H5F_t *file=NULL; /*the success return value */
H5F_t *ret_value=NULL;/*actual return value */
H5F_file_t *shared=NULL; /*shared part of `file' */
H5FD_t *lf=NULL; /*file driver part of `shared' */
uint8_t buf[256]; /*temporary I/O buffer */
const uint8_t *p; /*ptr into temp I/O buffer */
size_t fixed_size=24; /*fixed sizeof superblock */
size_t variable_size; /*variable sizeof superblock */
size_t driver_size; /*size of driver info block */
H5G_entry_t root_ent; /*root symbol table entry */
haddr_t eof; /*end of file address */
haddr_t stored_eoa; /*relative end-of-addr in file */
uintn tent_flags; /*tentative flags */
char driver_name[9]; /*file driver name/version */
hbool_t driver_has_cmp; /*`cmp' callback defined? */
FUNC_ENTER(H5F_open, NULL);
/*
* If the driver has a `cmp' method then the driver is capable of
* determining when two file handles refer to the same file and the
* library can insure that when the application opens a file twice that
* the two handles coordinate their operations appropriately. Otherwise
* it is the application's responsibility to never open the same file
* more than once at a time.
*/
driver_has_cmp = H5FD_has_cmp(fapl_id);
/*
* Opening a file is a two step process. First we try to open the file in
* a way which doesn't affect its state (like not truncating or creating
* it) so we can compare it with files that are already open. If that
* fails then we try again with the full set of flags (only if they're
* different than the original failed attempt). However, if the file
* driver can't distinquish between files then there's no reason to open
* the file tentatively because it's the application's responsibility to
* prevent this situation (there's no way for us to detect it here
* anyway).
*/
if (driver_has_cmp) {
tent_flags = flags & ~(H5F_ACC_CREAT|H5F_ACC_TRUNC|H5F_ACC_EXCL);
} else {
tent_flags = flags;
}
if (NULL==(lf=H5FD_open(name, tent_flags, fapl_id, HADDR_UNDEF))) {
if (tent_flags == flags) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to open file");
}
H5E_clear();
tent_flags = flags;
if (NULL==(lf=H5FD_open(name, tent_flags, fapl_id, HADDR_UNDEF))) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to open file");
}
}
/* Is the file already open? */
if ((file=H5I_search(H5I_FILE, H5F_equal, lf)) ||
(file=H5I_search(H5I_FILE_CLOSING, H5F_equal, lf))) {
/*
* The file is already open, so use that one instead of the one we
* just opened. We only one one H5FD_t* per file so one doesn't
* confuse the other. But fail if this request was to truncate the
* file (since we can't do that while the file is open), or if the
* request was to create a non-existent file (since the file already
* exists), or if the new request adds write access (since the
* readers don't expect the file to change under them).
*/
H5FD_close(lf);
if (flags & H5F_ACC_TRUNC) {
file = NULL; /*to prevent destruction of wrong file*/
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to truncate a file which is already open");
}
if (flags & H5F_ACC_EXCL) {
file = NULL; /*to prevent destruction of wrong file*/
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"file exists");
}
if ((flags & H5F_ACC_RDWR) && 0==(file->intent & H5F_ACC_RDWR)) {
file = NULL; /*to prevent destruction of wrong file*/
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"file is already open for read-only");
}
file = H5F_new(file->shared, fcpl_id, fapl_id);
lf = file->shared->lf;
} else if (flags!=tent_flags) {
/*
* This file is not yet open by the library and the flags we used to
* open it are different than the desired flags. Close the tentative
* file and open it for real.
*/
H5FD_close(lf);
if (NULL==(lf=H5FD_open(name, flags, fapl_id, HADDR_UNDEF))) {
file = NULL; /*to prevent destruction of wrong file*/
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to open file");
}
file = H5F_new(NULL, fcpl_id, fapl_id);
file->shared->flags = flags;
file->shared->lf = lf;
} else {
/*
* This file is not yet open by the library and our tentative opening
* above is good enough.
*/
file = H5F_new(NULL, fcpl_id, fapl_id);
file->shared->flags = flags;
file->shared->lf = lf;
}
/* Short cuts */
shared = file->shared;
lf = shared->lf;
/*
* The intent at the top level file struct are not necessarily the same as
* the flags at the bottom. The top level describes how the file can be
* accessed through the HDF5 library. The bottom level describes how the
* file can be accessed through the C library.
*/
file->intent = flags;
file->name = H5MM_xstrdup(name);
/*
* Read or write the file superblock, depending on whether the file is
* empty or not.
*/
if (0==H5FD_get_eof(lf) && (flags & H5F_ACC_RDWR)) {
/*
* The superblock starts immediately after the user-defined header,
* which we have already insured is a proper size. The base address
* is set to the same thing as the superblock for now.
*/
shared->boot_addr = shared->fcpl->userblock_size;
shared->base_addr = shared->boot_addr;
shared->consist_flags = 0x03;
if (H5F_flush(file, H5F_SCOPE_LOCAL, FALSE, TRUE)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL,
"unable to write file superblock");
}
/* Create and open the root group */
if (H5G_mkroot(file, NULL)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL,
"unable to create/open root group");
}
} else if (1==shared->nrefs) {
/* Read the superblock if it hasn't been read before. */
if (HADDR_UNDEF==(shared->boot_addr=H5F_locate_signature(lf))) {
HGOTO_ERROR(H5E_FILE, H5E_NOTHDF5, NULL,
"unable to find file signature");
}
if (H5FD_set_eoa(lf, shared->boot_addr+fixed_size)<0 ||
H5FD_read(lf, H5P_DEFAULT, shared->boot_addr, fixed_size, buf)<0) {
HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL,
"unable to read superblock");
}
/* Signature, already checked */
p = buf + H5F_SIGNATURE_LEN;
/* Superblock version */
shared->fcpl->bootblock_ver = *p++;
if (HDF5_BOOTBLOCK_VERSION!=shared->fcpl->bootblock_ver) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad superblock version number");
}
/* Freespace version */
shared->fcpl->freespace_ver = *p++;
if (HDF5_FREESPACE_VERSION!=shared->fcpl->freespace_ver) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad free space version number");
}
/* Root group version number */
shared->fcpl->objectdir_ver = *p++;
if (HDF5_OBJECTDIR_VERSION!=shared->fcpl->objectdir_ver) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad root group version number");
}
/* reserved */
p++;
/* Shared header version number */
shared->fcpl->sharedheader_ver = *p++;
if (HDF5_SHAREDHEADER_VERSION!=shared->fcpl->sharedheader_ver) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad shared header version number");
}
/* Size of file addresses */
shared->fcpl->sizeof_addr = *p++;
if (shared->fcpl->sizeof_addr != 2 &&
shared->fcpl->sizeof_addr != 4 &&
shared->fcpl->sizeof_addr != 8 &&
shared->fcpl->sizeof_addr != 16 &&
shared->fcpl->sizeof_addr != 32) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad file sizeof(address)");
}
/* Size of file sizes */
shared->fcpl->sizeof_size = *p++;
if (shared->fcpl->sizeof_size != 2 &&
shared->fcpl->sizeof_size != 4 &&
shared->fcpl->sizeof_size != 8 &&
shared->fcpl->sizeof_size != 16 &&
shared->fcpl->sizeof_size != 32) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad file sizeof(size)");
}
/* Reserved byte */
p++;
/* Various B-tree sizes */
UINT16DECODE(p, shared->fcpl->sym_leaf_k);
if (shared->fcpl->sym_leaf_k < 1) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad symbol table leaf node 1/2 rank");
}
UINT16DECODE(p, shared->fcpl->btree_k[H5B_SNODE_ID]);
if (shared->fcpl->btree_k[H5B_SNODE_ID] < 1) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad symbol table internal node 1/2 rank");
}
/* File consistency flags. Not really used yet */
UINT32DECODE(p, shared->consist_flags);
assert((size_t)(p-buf) == fixed_size);
/* Decode the variable-length part of the superblock... */
variable_size = H5F_SIZEOF_ADDR(file) + /*base addr*/
H5F_SIZEOF_ADDR(file) + /*global free list*/
H5F_SIZEOF_ADDR(file) + /*end-of-address*/
H5F_SIZEOF_ADDR(file) + /*reserved address*/
H5G_SIZEOF_ENTRY(file); /*root group ptr*/
assert(variable_size<=sizeof buf);
if (H5FD_set_eoa(lf, shared->boot_addr+fixed_size+variable_size)<0 ||
H5FD_read(lf, H5P_DEFAULT, shared->boot_addr+fixed_size,
variable_size, buf)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to read superblock");
}
p = buf;
H5F_addr_decode(file, &p, &(shared->base_addr)/*out*/);
H5F_addr_decode(file, &p, &(shared->freespace_addr)/*out*/);
H5F_addr_decode(file, &p, &stored_eoa/*out*/);
H5F_addr_decode(file, &p, &(shared->driver_addr)/*out*/);
if (H5G_ent_decode(file, &p, &root_ent/*out*/)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to read root symbol entry");
}
/* Decode the optional driver information block */
if (H5F_addr_defined(shared->driver_addr)) {
haddr_t drv_addr = shared->base_addr + shared->driver_addr;
if (H5FD_set_eoa(lf, drv_addr+16)<0 ||
H5FD_read(lf, H5P_DEFAULT, drv_addr, 16, buf)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to read driver information block");
}
p = buf;
/* Version number */
if (HDF5_DRIVERINFO_VERSION!=*p++) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"bad driver information block version number");
}
/* Reserved */
p += 3;
/* Driver info size */
UINT32DECODE(p, driver_size);
/* Driver name and/or version */
strncpy(driver_name, (const char *)p, 8);
driver_name[8] = '\0';
/* Read driver information and decode */
if (H5FD_set_eoa(lf, drv_addr+16+driver_size)<0 ||
H5FD_read(lf, H5P_DEFAULT, drv_addr+16, driver_size, buf)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to read file driver information");
}
if (H5FD_sb_decode(lf, driver_name, buf)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to decode driver information");
}
}
/* Make sure we can open the root group */
if (H5G_mkroot(file, &root_ent)<0) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to read root group");
}
/*
* The user-defined data is the area of the file before the base
* address.
*/
shared->fcpl->userblock_size = shared->base_addr;
/*
* Make sure that the data is not truncated. One case where this is
* possible is if the first file of a family of files was opened
* individually.
*/
if (HADDR_UNDEF==(eof=H5FD_get_eof(lf))) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to determine file size");
}
if (eof<stored_eoa) {
HGOTO_ERROR(H5E_FILE, H5E_TRUNCATED, NULL, "truncated file");
}
/*
* Tell the file driver how much address space has already been
* allocated so that it knows how to allocated additional memory.
*/
if (H5FD_set_eoa(lf, stored_eoa)<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"unable to set end-of-address marker for file");
}
}
/* Success */
ret_value = file;
done:
if (!ret_value && file) H5F_dest(file);
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Fcreate
*
* Purpose: This is the primary function for creating HDF5 files . The
* flags parameter determines whether an existing file will be
* overwritten or not. All newly created files are opened for
* both reading and writing. All flags may be combined with the
* bit-wise OR operator (`|') to change the behavior of the file
* create call.
*
* The more complex behaviors of a file's creation and access
* are controlled through the file-creation and file-access
* property lists. The value of H5P_DEFAULT for a template
* value indicates that the library should use the default
* values for the appropriate template.
*
* See also: H5Fpublic.h for the list of supported flags. H5Ppublic.h for
* the list of file creation and file access properties.
*
* Return: Success: A file ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
* Modifications:
* Robb Matzke, 1997-07-18
* File struct creation and destruction is through H5F_new() and
* H5F_dest(). Writing the root symbol table entry is done with
* H5G_encode().
*
* Robb Matzke, 1997-08-29
* Moved creation of the boot block to H5F_flush().
*
* Robb Matzke, 1997-09-23
* Most of the work is now done by H5F_open() since H5Fcreate()
* and H5Fopen() originally contained almost identical code.
*
* Robb Matzke, 1998-02-18
* Better error checking for the creation and access property
* lists. It used to be possible to swap the two and core the
* library. Also, zero is no longer valid as a default property
* list; one must use H5P_DEFAULT instead.
*
* Robb Matzke, 1999-08-02
* The file creation and file access property lists are passed
* to the H5F_open() as object IDs.
*-------------------------------------------------------------------------
*/
hid_t
H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id,
hid_t fapl_id)
{
H5F_t *new_file = NULL; /*file struct for new file */
hid_t ret_value = FAIL; /*return value */
FUNC_ENTER(H5Fcreate, FAIL);
H5TRACE4("i","sIuii",filename,flags,fcpl_id,fapl_id);
/* Check/fix arguments */
if (!filename || !*filename) {
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name");
}
if (flags & ~(H5F_ACC_EXCL|H5F_ACC_TRUNC|H5F_ACC_DEBUG)) {
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid flags");
}
if ((flags & H5F_ACC_EXCL) && (flags & H5F_ACC_TRUNC)) {
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL,
"mutually exclusive flags for file creation");
}
if (H5P_DEFAULT!=fcpl_id &&
(H5P_FILE_CREATE!=H5P_get_class(fcpl_id) ||
NULL==H5I_object(fcpl_id))) {
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"not a file creation property list");
}
if (H5P_DEFAULT!=fapl_id &&
(H5P_FILE_ACCESS!=H5P_get_class(fapl_id) ||
NULL==H5I_object(fapl_id))) {
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"not a file access property list");
}
/*
* Adjust bit flags by turning on the creation bit and making sure that
* the EXCL or TRUNC bit is set. All newly-created files are opened for
* reading and writing.
*/
if (0==(flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC))) {
flags |= H5F_ACC_EXCL; /*default*/
}
flags |= H5F_ACC_RDWR | H5F_ACC_CREAT;
/*
* Create a new file or truncate an existing file.
*/
if (NULL==(new_file=H5F_open(filename, flags, fcpl_id, fapl_id))) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to create file");
}
/* Get an atom for the file */
if ((ret_value = H5I_register(H5I_FILE, new_file))<0) {
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL,
"unable to atomize file");
}
done:
if (ret_value<0 && new_file) H5F_close(new_file);
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Fopen
*
* Purpose: This is the primary function for accessing existing HDF5
* files. The FLAGS argument determines whether writing to an
* existing file will be allowed or not. All flags may be
* combined with the bit-wise OR operator (`|') to change the
* behavior of the file open call. The more complex behaviors
* of a file's access are controlled through the file-access
* property list.
*
* See Also: H5Fpublic.h for a list of possible values for FLAGS.
*
* Return: Success: A file ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
* Modifications:
* Robb Matzke, 1997-07-18
* File struct creation and destruction is through H5F_new() and
* H5F_dest(). Reading the root symbol table entry is done with
* H5G_decode().
*
* Robb Matzke, 1997-09-23
* Most of the work is now done by H5F_open() since H5Fcreate()
* and H5Fopen() originally contained almost identical code.
*
* Robb Matzke, 1998-02-18
* Added better error checking for the flags and the file access
* property list. It used to be possible to make the library
* dump core by passing an object ID that was not a file access
* property list.
*
* Robb Matzke, 1999-08-02
* The file access property list is passed to the H5F_open() as
* object IDs.
*-------------------------------------------------------------------------
*/
hid_t
H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
{
H5F_t *new_file = NULL; /*file struct for new file */
hid_t ret_value = FAIL; /*return value */
FUNC_ENTER(H5Fopen, FAIL);
H5TRACE3("i","sIui",filename,flags,fapl_id);
/* Check/fix arguments. */
if (!filename || !*filename) {
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name");
}
if ((flags & ~H5F_ACC_PUBLIC_FLAGS) ||
(flags & H5F_ACC_TRUNC) || (flags & H5F_ACC_EXCL)) {
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file open flags");
}
if (H5P_DEFAULT!=fapl_id &&
(H5P_FILE_ACCESS!=H5P_get_class(fapl_id) ||
NULL==H5I_object(fapl_id))) {
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"not a file access property list");
}
/* Open the file */
if (NULL==(new_file=H5F_open(filename, flags, H5P_DEFAULT, fapl_id))) {
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to open file");
}
/* Get an atom for the file */
if ((ret_value = H5I_register(H5I_FILE, new_file))<0) {
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL,
"unable to atomize file handle");
}
done:
if (ret_value<0 && new_file) H5F_close(new_file);
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5Fflush
*
* Purpose: Flushes all outstanding buffers of a file to disk but does
* not remove them from the cache. The OBJECT_ID can be a file,
* dataset, group, attribute, or named data type.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, August 6, 1998
*
* Modifications:
*
* Robb Matzke, 1998-10-16
* Added the `scope' argument.
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fflush(hid_t object_id, H5F_scope_t scope)
{
H5F_t *f = NULL;
H5G_t *grp = NULL;
H5T_t *type = NULL;
H5D_t *dset = NULL;
H5A_t *attr = NULL;
H5G_entry_t *ent = NULL;
FUNC_ENTER(H5Fflush, FAIL);
H5TRACE2("e","iFs",object_id,scope);
switch (H5I_get_type(object_id)) {
case H5I_FILE:
if (NULL==(f=H5I_object(object_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"invalid file identifier");
}
break;
case H5I_GROUP:
if (NULL==(grp=H5I_object(object_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"invalid group identifier");
}
ent = H5G_entof(grp);
break;
case H5I_DATATYPE:
if (NULL==(type=H5I_object(object_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"invalid type identifier");
}
ent = H5T_entof(type);
break;
case H5I_DATASET:
if (NULL==(dset=H5I_object(object_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"invalid dataset identifier");
}
ent = H5D_entof(dset);
break;
case H5I_ATTR:
if (NULL==(attr=H5I_object(object_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"invalid attribute identifier");
}
ent = H5A_entof(attr);
break;
default:
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"not a file or file object");
}
if (!f) {
if (!ent) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"object is not assocated with a file");
}
f = ent->file;
}
if (!f) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"object is not associated with a file");
}
/* Flush the file */
if (H5F_flush(f, scope, FALSE, FALSE)<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL,
"flush failed");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_flush
*
* Purpose: Flushes (and optionally invalidates) cached data plus the
* file boot block. If the logical file size field is zero
* then it is updated to be the length of the boot block.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 29 1997
*
* Modifications:
* rky 1998-08-28
* Only p0 writes metadata to disk.
*
* Robb Matzke, 1998-10-16
* Added the `scope' argument to indicate what should be
* flushed. If the value is H5F_SCOPE_GLOBAL then the entire
* virtual file is flushed; a value of H5F_SCOPE_LOCAL means
* that only the specified file is flushed. A value of
* H5F_SCOPE_DOWN means flush the specified file and all
* children.
*
* Robb Matzke, 1999-08-02
* If ALLOC_ONLY is non-zero then all this function does is
* allocate space for the userblock and superblock. Also
* rewritten to use the virtual file layer.
*
* Robb Matzke, 1999-08-16
* The driver information block is encoded and either allocated
* or written to disk.
*-------------------------------------------------------------------------
*/
static herr_t
H5F_flush(H5F_t *f, H5F_scope_t scope, hbool_t invalidate,
hbool_t alloc_only)
{
uint8_t sbuf[2048], dbuf[2048], *p=NULL;
uintn nerrors=0, i;
hsize_t superblock_size, driver_size;
char driver_name[9];
FUNC_ENTER(H5F_flush, FAIL);
/*
* Nothing to do if the file is read only. This determination is made at
* the shared open(2) flags level, implying that opening a file twice,
* once for read-only and once for read-write, and then calling
* H5F_flush() with the read-only handle, still causes data to be flushed.
*/
if (0 == (H5F_ACC_RDWR & f->shared->flags)) {
HRETURN(SUCCEED);
}
/* Flush other stuff depending on scope */
if (H5F_SCOPE_GLOBAL==scope) {
while (f->mtab.parent) f = f->mtab.parent;
scope = H5F_SCOPE_DOWN;
}
if (H5F_SCOPE_DOWN==scope) {
for (i=0; i<f->mtab.nmounts; i++) {
if (H5F_flush(f->mtab.child[i].file, scope, invalidate, FALSE)<0) {
nerrors++;
}
}
}
/* flush the entire raw data cache */
if (!alloc_only && H5F_istore_flush (f, invalidate)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush raw data cache");
}
/* flush (and invalidate) the entire meta data cache */
if (!alloc_only && H5AC_flush(f, NULL, HADDR_UNDEF, invalidate)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush meta data cache");
}
/* encode the file boot block */
p = sbuf;
HDmemcpy(p, H5F_SIGNATURE, H5F_SIGNATURE_LEN);
p += H5F_SIGNATURE_LEN;
*p++ = f->shared->fcpl->bootblock_ver;
*p++ = f->shared->fcpl->freespace_ver;
*p++ = f->shared->fcpl->objectdir_ver;
*p++ = 0; /*reserved*/
*p++ = f->shared->fcpl->sharedheader_ver;
assert (H5F_SIZEOF_ADDR(f)<=255);
*p++ = (uint8_t)H5F_SIZEOF_ADDR(f);
assert (H5F_SIZEOF_SIZE(f)<=255);
*p++ = (uint8_t)H5F_SIZEOF_SIZE(f);
*p++ = 0; /*reserved */
UINT16ENCODE(p, f->shared->fcpl->sym_leaf_k);
UINT16ENCODE(p, f->shared->fcpl->btree_k[H5B_SNODE_ID]);
UINT32ENCODE(p, f->shared->consist_flags);
H5F_addr_encode(f, &p, f->shared->base_addr);
H5F_addr_encode(f, &p, f->shared->freespace_addr);
H5F_addr_encode(f, &p, H5FD_get_eoa(f->shared->lf));
H5F_addr_encode(f, &p, f->shared->driver_addr);
H5G_ent_encode(f, &p, H5G_entof(f->shared->root_grp));
superblock_size = p-sbuf;
/*
* Encode the driver information block.
*/
if ((driver_size=H5FD_sb_size(f->shared->lf))) {
driver_size += 16; /*driver block header */
assert(driver_size<=sizeof dbuf);
p = dbuf;
/* Version */
*p++ = HDF5_DRIVERINFO_VERSION;
/* Reserved*/
p += 3;
/* Driver info size, excluding header */
UINT32ENCODE(p, driver_size-16);
/* Encode driver-specific data */
if (H5FD_sb_encode(f->shared->lf, driver_name, dbuf+16)<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL,
"unable to encode driver information");
}
/* Driver name */
HDmemcpy(dbuf+8, driver_name, 8);
}
if (alloc_only) {
/*
* Allocate space for the userblock, superblock, and driver info
* block. We do it with one allocation request because the userblock
* and superblock need to be at the beginning of the file and only
* the first allocation request is required to return memory at
* format address zero.
*/
haddr_t addr = H5FD_alloc(f->shared->lf, H5FD_MEM_SUPER,
(f->shared->base_addr +
superblock_size +
driver_size));
if (HADDR_UNDEF==addr) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL,
"unable to allocate file space for userblock "
"and/or superblock");
}
if (0!=addr) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL,
"file driver failed to allocate userblock "
"and/or superblock at address zero");
}
/*
* The file driver information block begins immediately after the
* superblock.
*/
if (driver_size>0) {
f->shared->driver_addr = superblock_size;
}
} else {
/* Write superblock */
#ifdef H5_HAVE_PARALLEL
H5FD_mpio_tas_allsame(f->shared->lf, TRUE); /*only p0 will write*/
#endif
if (H5FD_write(f->shared->lf, H5P_DEFAULT, f->shared->boot_addr,
superblock_size, sbuf)<0) {
HRETURN_ERROR(H5E_IO, H5E_WRITEERROR, FAIL,
"unable to write superblock");
}
/* Write driver information block */
if (HADDR_UNDEF!=f->shared->driver_addr) {
#ifdef H5_HAVE_PARALLEL
H5FD_mpio_tas_allsame(f->shared->lf, TRUE); /*only p0 will write*/
#endif
if (H5FD_write(f->shared->lf, H5P_DEFAULT,
f->shared->base_addr+superblock_size, driver_size,
dbuf)<0) {
HRETURN_ERROR(H5E_IO, H5E_WRITEERROR, FAIL,
"unable to write driver information block");
}
}
}
/* Flush file buffers to disk */
if (!alloc_only && H5FD_flush(f->shared->lf)<0) {
HRETURN_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "low level flush failed");
}
/* Check flush errors for children - errors are already on the stack */
if (nerrors) HRETURN(FAIL);
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_close
*
* Purpose: Closes a file or causes the close operation to be pended.
* This function is called two ways: from the API it gets called
* by H5Fclose->H5I_dec_ref->H5F_close when H5I_dec_ref()
* decrements the file ID reference count to zero. The file ID
* is removed from the H5I_FILE group by H5I_dec_ref() just
* before H5F_close() is called. If there are open object
* headers then the close is pended by moving the file to the
* H5I_FILE_CLOSING ID group (the f->closing contains the ID
* assigned to file).
*
* This function is also called directly from H5O_close() when
* the last object header is closed for the file and the file
* has a pending close.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, September 23, 1997
*
* Modifications:
* Robb Matzke, 1998-10-14
* Nothing happens unless the H5F_t reference count is one (the
* file is flushed anyway). The reference count is decremented
* by H5F_dest().
*
* Robb Matzke, 1999-08-02
* Modified to use the virtual file layer.
*-------------------------------------------------------------------------
*/
herr_t
H5F_close(H5F_t *f)
{
uintn i;
FUNC_ENTER(H5F_close, FAIL);
assert(f->nrefs>0);
/*
* If this file is referenced more than once then just decrement the
* count, flush the file, and return.
*/
if (f->nrefs>1) {
if (H5F_flush(f, H5F_SCOPE_LOCAL, FALSE, FALSE)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush cache");
}
H5F_dest(f); /*decrement reference counts*/
HRETURN(SUCCEED);
}
/*
* Unmount and close each child before closing the current file.
*/
assert(NULL==f->mtab.parent);
for (i=0; i<f->mtab.nmounts; i++) {
f->mtab.child[i].file->mtab.parent = NULL;
H5G_close(f->mtab.child[i].group);
H5F_close(f->mtab.child[i].file);
}
f->mtab.nmounts = 0;
/*
* If object headers are still open then delay deletion of resources until
* they have all been closed. Flush all caches and update the object
* header anyway so that failing to close all objects isn't a major
* problem. If the file is on the H5I_FILE list then move it to the
* H5I_FILE_CLOSING list instead.
*/
if (f->nopen_objs>0) {
if (H5F_flush(f, H5F_SCOPE_LOCAL, FALSE, FALSE)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush cache");
}
#ifdef H5F_DEBUG
if (H5DEBUG(F)) {
fprintf(H5DEBUG(F), "H5F: H5F_close(%s): %u object header%s still "
"open (file close will complete when %s closed)\n",
f->name,
f->nopen_objs,
1 == f->nopen_objs?" is":"s are",
1 == f->nopen_objs?"that header is":"those headers are");
}
#endif
if (!f->closing) {
f->closing = H5I_register(H5I_FILE_CLOSING, f);
}
HRETURN(SUCCEED);
} else if (f->closing) {
#ifdef H5F_DEBUG
if (H5DEBUG(F)) {
fprintf(H5DEBUG(F), "H5F: H5F_close: operation completing\n");
}
#endif
}
/*
* If this is the last reference to the shared part of the file then
* close it also.
*/
assert(1==f->nrefs);
if (1==f->shared->nrefs) {
/* Flush and destroy all caches */
if (H5F_flush(f, H5F_SCOPE_LOCAL, TRUE, FALSE)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush cache");
}
/* Dump debugging info */
H5AC_debug(f);
H5F_istore_stats(f, FALSE);
} else {
/*
* Flush all caches but do not destroy. As long as all handles for
* this file are closed the flush isn't really necessary, but lets
* just be safe.
*/
if (H5F_flush(f, H5F_SCOPE_LOCAL, TRUE, FALSE)<0) {
HRETURN_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL,
"unable to flush cache");
}
}
/*
* Destroy the H5F_t struct and decrement the reference count for the
* shared H5F_file_t struct. If the reference count for the H5F_file_t
* struct reaches zero then destroy it also.
*/
if (H5F_dest(f)<0) {
HRETURN_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "problems closing file");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Fclose
*
* Purpose: This function closes the file specified by FILE_ID by
* flushing all data to storage, and terminating access to the
* file through FILE_ID. If objects (e.g., datasets, groups,
* etc.) are open in the file then the underlying storage is not
* closed until those objects are closed; however, all data for
* the file and the open objects is flushed.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Saturday, February 20, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fclose(hid_t file_id)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER(H5Fclose, FAIL);
H5TRACE1("e","i",file_id);
/* Check/fix arguments. */
if (H5I_FILE != H5I_get_type(file_id)) {
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file atom");
}
if (NULL == H5I_object(file_id)) {
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "unable to unatomize file");
}
/*
* Decrement reference count on atom. When it reaches zero the file will
* be closed.
*/
if (H5I_dec_ref (file_id)<0) {
HGOTO_ERROR (H5E_ATOM, H5E_CANTINIT, FAIL, "problems closing file");
}
done:
FUNC_LEAVE(ret_value < 0 ? FAIL : SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_mount
*
* Purpose: Mount file CHILD onto the group specified by LOC and NAME,
* using mount properties in PLIST. CHILD must not already be
* mouted and must not be a mount ancestor of the mount-point.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, October 6, 1998
*
* Modifications:
*
* Robb Matzke, 1998-10-14
* The reference count for the mounted H5F_t is incremented.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_mount(H5G_entry_t *loc, const char *name, H5F_t *child,
const H5F_mprop_t UNUSED *plist)
{
H5G_t *mount_point = NULL; /*mount point group */
H5G_entry_t *mp_ent = NULL; /*mount point symbol table entry*/
H5F_t *ancestor = NULL; /*ancestor files */
H5F_t *parent = NULL; /*file containing mount point */
intn lt, rt, md, cmp; /*binary search indices */
H5G_entry_t *ent = NULL; /*temporary symbol table entry */
herr_t ret_value = FAIL; /*return value */
FUNC_ENTER(H5F_mount, FAIL);
assert(loc);
assert(name && *name);
assert(child);
assert(plist);
/*
* Check that the child isn't mounted, that the mount point exists, and
* that the mount wouldn't introduce a cycle in the mount tree.
*/
if (child->mtab.parent) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "file is already mounted");
}
if (NULL==(mount_point=H5G_open(loc, name))) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point not found");
}
parent = H5G_fileof(mount_point);
mp_ent = H5G_entof(mount_point);
for (ancestor=parent; ancestor; ancestor=ancestor->mtab.parent) {
if (ancestor==child) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL,
"mount would introduce a cycle");
}
}
/*
* Use a binary search to locate the position that the child should be
* inserted into the parent mount table. At the end of this paragraph
* `md' will be the index where the child should be inserted.
*/
lt = md = 0;
rt = parent->mtab.nmounts;
cmp = -1;
while (lt<rt && cmp) {
md = (lt+rt)/2;
ent = H5G_entof(parent->mtab.child[md].group);
cmp = H5F_addr_cmp(mp_ent->header, ent->header);
if (cmp<0) {
rt = md;
} else if (cmp>0) {
lt = md+1;
}
}
if (cmp>0) md++;
if (!cmp) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL,
"mount point is already in use");
}
/* Make room in the table */
if (parent->mtab.nmounts>=parent->mtab.nalloc) {
uintn n = MAX(16, 2*parent->mtab.nalloc);
H5F_mount_t *x = H5MM_realloc(parent->mtab.child,
n*sizeof(parent->mtab.child[0]));
if (!x) {
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,
"memory allocation failed for mount table");
}
parent->mtab.child = x;
parent->mtab.nalloc = n;
}
/* Insert into table */
HDmemmove(parent->mtab.child+md+1,
parent->mtab.child+md,
(parent->mtab.nmounts-md)*sizeof(parent->mtab.child[0]));
parent->mtab.nmounts++;
parent->mtab.child[md].group = mount_point;
parent->mtab.child[md].file = child;
child->mtab.parent = parent;
child->nrefs++;
ret_value = SUCCEED;
done:
if (ret_value<0 && mount_point) {
H5G_close(mount_point);
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_unmount
*
* Purpose: Unmount the child which is mounted at the group specified by
* LOC and NAME or fail if nothing is mounted there. Neither
* file is closed.
*
* Because the mount point is specified by name and opened as a
* group, the H5G_namei() will resolve it to the root of the
* mounted file, not the group where the file is mounted.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, October 6, 1998
*
* Modifications:
*
* Robb Matzke, 1998-10-14
* The ref count for the child is decremented by calling H5F_close().
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_unmount(H5G_entry_t *loc, const char *name)
{
H5G_t *mounted = NULL; /*mount point group */
H5G_entry_t *mnt_ent = NULL; /*mounted symbol table entry */
H5F_t *child = NULL; /*mounted file */
H5F_t *parent = NULL; /*file where mounted */
H5G_entry_t *ent = NULL; /*temporary symbol table entry */
herr_t ret_value = FAIL; /*return value */
uintn i; /*coutners */
intn lt, rt, md=(-1), cmp; /*binary search indices */
FUNC_ENTER(H5F_unmount, FAIL);
assert(loc);
assert(name && *name);
/*
* Get the mount point, or more precisely the root of the mounted file.
* If we get the root group and the file has a parent in the mount tree,
* then we must have found the mount point.
*/
if (NULL==(mounted=H5G_open(loc, name))) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point not found");
}
child = H5G_fileof(mounted);
mnt_ent = H5G_entof(mounted);
ent = H5G_entof(child->shared->root_grp);
if (child->mtab.parent &&
H5F_addr_eq(mnt_ent->header, ent->header)) {
/*
* We've been given the root group of the child. We do a reverse
* lookup in the parent's mount table to find the correct entry.
*/
parent = child->mtab.parent;
for (i=0; i<parent->mtab.nmounts; i++) {
if (parent->mtab.child[i].file==child) {
/* Unmount the child */
parent->mtab.nmounts -= 1;
H5G_close(parent->mtab.child[i].group);
child->mtab.parent = NULL;
H5F_close(child);
HDmemmove(parent->mtab.child+i,
parent->mtab.child+i+1,
((parent->mtab.nmounts-i)*
sizeof(parent->mtab.child[0])));
ret_value = SUCCEED;
}
}
assert(ret_value>=0);
} else {
/*
* We've been given the mount point in the parent. We use a binary
* search in the parent to locate the mounted file, if any.
*/
parent = child; /*we guessed wrong*/
lt = 0;
rt = parent->mtab.nmounts;
cmp = -1;
while (lt<rt && cmp) {
md = (lt+rt)/2;
ent = H5G_entof(parent->mtab.child[md].group);
cmp = H5F_addr_cmp(mnt_ent->header, ent->header);
if (cmp<0) {
rt = md;
} else {
lt = md+1;
}
}
if (cmp) {
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "not a mount point");
}
/* Unmount the child */
parent->mtab.nmounts -= 1;
H5G_close(parent->mtab.child[md].group);
parent->mtab.child[md].file->mtab.parent = NULL;
H5F_close(parent->mtab.child[md].file);
HDmemmove(parent->mtab.child+md,
parent->mtab.child+md+1,
(parent->mtab.nmounts-md)*sizeof(parent->mtab.child[0]));
ret_value = SUCCEED;
}
done:
if (mounted) H5G_close(mounted);
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_mountpoint
*
* Purpose: If ENT is a mount point then copy the entry for the root
* group of the mounted file into ENT.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, October 6, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5F_mountpoint(H5G_entry_t *find/*in,out*/)
{
H5F_t *parent = find->file;
intn lt, rt, md=(-1), cmp;
H5G_entry_t *ent = NULL;
FUNC_ENTER(H5F_mountpoint, FAIL);
assert(find);
/*
* The loop is necessary because we might have file1 mounted at the root
* of file2, which is mounted somewhere in file3.
*/
do {
/*
* Use a binary search to find the potential mount point in the mount
* table for the parent
*/
lt = 0;
rt = parent->mtab.nmounts;
cmp = -1;
while (lt<rt && cmp) {
md = (lt+rt)/2;
ent = H5G_entof(parent->mtab.child[md].group);
cmp = H5F_addr_cmp(find->header, ent->header);
if (cmp<0) {
rt = md;
} else {
lt = md+1;
}
}
/* Copy root info over to ENT */
if (0==cmp) {
ent = H5G_entof(parent->mtab.child[md].file->shared->root_grp);
*find = *ent;
parent = ent->file;
}
} while (!cmp);
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Fmount
*
* Purpose: Mount file CHILD_ID onto the group specified by LOC_ID and
* NAME using mount properties PLIST_ID.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, October 6, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fmount(hid_t loc_id, const char *name, hid_t child_id, hid_t plist_id)
{
H5G_entry_t *loc = NULL;
const H5F_mprop_t *plist = NULL;
H5F_t *child = NULL;
FUNC_ENTER(H5Fmount, FAIL);
H5TRACE4("e","isii",loc_id,name,child_id,plist_id);
/* Check arguments */
if (NULL==(loc=H5G_loc(loc_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location");
}
if (!name || !*name) {
HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name");
}
if (H5I_FILE!=H5I_get_type(child_id) ||
NULL==(child=H5I_object(child_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
if (H5P_DEFAULT==plist_id) {
plist = &H5F_mount_dflt;
} else if (H5P_MOUNT!=H5P_get_class(plist_id) ||
NULL==(plist=H5I_object(plist_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,
"not a mount property list");
}
/* Do the mount */
if (H5F_mount(loc, name, child, plist)<0) {
HRETURN_ERROR(H5E_FILE, H5E_MOUNT, FAIL,
"unable to mount file");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Funmount
*
* Purpose: Given a mount point, dissassociate the mount point's file
* from the file mounted there. Do not close either file.
*
* The mount point can either be the group in the parent or the
* root group of the mounted file (both groups have the same
* name). If the mount point was opened before the mount then
* it's the group in the parent, but if it was opened after the
* mount then it's the root group of the child.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, October 6, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Funmount(hid_t loc_id, const char *name)
{
H5G_entry_t *loc = NULL;
FUNC_ENTER(H5Funmount, FAIL);
H5TRACE2("e","is",loc_id,name);
/* Check args */
if (NULL==(loc=H5G_loc(loc_id))) {
HRETURN_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location");
}
if (!name || !*name) {
HRETURN_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name");
}
/* Unmount */
if (H5F_unmount(loc, name)<0) {
HRETURN_ERROR(H5E_FILE, H5E_MOUNT, FAIL,
"unable to unmount file");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5Freopen
*
* Purpose: Reopen a file. The new file handle which is returned points
* to the same file as the specified file handle. Both handles
* share caches and other information. The only difference
* between the handles is that the new handle is not mounted
* anywhere and no files are mounted on it.
*
* Return: Success: New file ID
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Friday, October 16, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5Freopen(hid_t file_id)
{
H5F_t *old_file=NULL;
H5F_t *new_file=NULL;
hid_t ret_value = -1;
FUNC_ENTER(H5Freopen, FAIL);
H5TRACE1("i","i",file_id);
if (H5I_FILE!=H5I_get_type(file_id) ||
NULL==(old_file=H5I_object(file_id))) {
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file");
}
if (NULL==(new_file=H5F_new(old_file->shared, H5P_DEFAULT, H5P_DEFAULT))) {
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to reopen file");
}
if ((ret_value=H5I_register(H5I_FILE, new_file))<0) {
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL,
"unable to atomize file handle");
}
done:
if (ret_value<0 && new_file) {
H5F_close(new_file);
}
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5F_block_read
*
* Purpose: Reads some data from a file/server/etc into a buffer.
* The data is contiguous. The address is relative to the base
* address for the file.
*
* Errors:
* IO READERROR Low-level read failed.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 10 1997
*
* Modifications:
* Albert Cheng, 1998-06-02
* Added XFER_MODE argument
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* Robb Matzke, 1999-08-02
* Modified to use the virtual file layer. The data transfer
* property list is passed in by object ID since that's how the
* virtual file layer needs it.
*-------------------------------------------------------------------------
*/
herr_t
H5F_block_read(H5F_t *f, haddr_t addr, hsize_t size, hid_t dxpl_id,
void *buf/*out*/)
{
haddr_t abs_addr;
FUNC_ENTER(H5F_block_read, FAIL);
assert(size<SIZET_MAX);
/* convert the relative address to an absolute address */
abs_addr = f->shared->base_addr + addr;
/* Read the data */
if (H5FD_read(f->shared->lf, dxpl_id, abs_addr, size, buf)<0) {
HRETURN_ERROR(H5E_IO, H5E_READERROR, FAIL, "file read failed");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_block_write
*
* Purpose: Writes some data from memory to a file/server/etc. The
* data is contiguous. The address is relative to the base
* address.
*
* Errors:
* IO WRITEERROR Low-level write failed.
* IO WRITEERROR No write intent.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 10 1997
*
* Modifications:
* Albert Cheng, 1998-06-02
* Added XFER_MODE argument
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* Robb Matzke, 1999-08-02
* Modified to use the virtual file layer. The data transfer
* property list is passed in by object ID since that's how the
* virtual file layer needs it.
*-------------------------------------------------------------------------
*/
herr_t
H5F_block_write(H5F_t *f, haddr_t addr, hsize_t size, hid_t dxpl_id,
const void *buf)
{
haddr_t abs_addr;
FUNC_ENTER(H5F_block_write, FAIL);
assert (size<SIZET_MAX);
if (0==(f->intent & H5F_ACC_RDWR)) {
HRETURN_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "no write intent");
}
/* Convert the relative address to an absolute address */
abs_addr = f->shared->base_addr + addr;
/* Write the data */
if (H5FD_write(f->shared->lf, dxpl_id, abs_addr, size, buf)) {
HRETURN_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "file write failed");
}
FUNC_LEAVE(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_addr_encode
*
* Purpose: Encodes an address into the buffer pointed to by *PP and
* then increments the pointer to the first byte after the
* address. An undefined value is stored as all 1's.
*
* Return: void
*
* Programmer: Robb Matzke
* Friday, November 7, 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
void
H5F_addr_encode(H5F_t *f, uint8_t **pp/*in,out*/, haddr_t addr)
{
uintn i;
haddr_t tmp;
assert(f);
assert(pp && *pp);
if (H5F_addr_defined(addr)) {
tmp = addr;
for (i=0; i<H5F_SIZEOF_ADDR(f); i++) {
*(*pp)++ = (uint8_t)(tmp & 0xff);
tmp >>= 8;
}
assert("overflow" && 0 == tmp);
} else {
for (i=0; i<H5F_SIZEOF_ADDR(f); i++) {
*(*pp)++ = 0xff;
}
}
}
/*-------------------------------------------------------------------------
* Function: H5F_addr_decode
*
* Purpose: Decodes an address from the buffer pointed to by *PP and
* updates the pointer to point to the next byte after the
* address.
*
* If the value read is all 1's then the address is returned
* with an undefined value.
*
* Return: void
*
* Programmer: Robb Matzke
* Friday, November 7, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void
H5F_addr_decode(H5F_t *f, const uint8_t **pp/*in,out*/, haddr_t *addr_p/*out*/)
{
uintn i;
haddr_t tmp;
uint8_t c;
hbool_t all_zero = TRUE;
assert(f);
assert(pp && *pp);
assert(addr_p);
*addr_p = 0;
for (i=0; i<H5F_SIZEOF_ADDR(f); i++) {
c = *(*pp)++;
if (c != 0xff) all_zero = FALSE;
if (i<sizeof(*addr_p)) {
tmp = c;
tmp <<= i * 8; /*use tmp to get casting right */
*addr_p |= tmp;
} else if (!all_zero) {
assert(0 == **pp); /*overflow */
}
}
if (all_zero) *addr_p = HADDR_UNDEF;
}
/*-------------------------------------------------------------------------
* Function: H5F_addr_pack
*
* Purpose: Converts a long[2] array (usually returned from
* H5G_get_objinfo) back into a haddr_t
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Tuesday, October 23, 1998
*
* Modifications:
* Albert Cheng, 1999-02-18
* Changed objno to unsigned long type to be consistent with
* addr->offset and how it is being called.
*-------------------------------------------------------------------------
*/
herr_t
H5F_addr_pack(H5F_t UNUSED *f, haddr_t *addr_p/*out*/,
const unsigned long objno[2])
{
assert(f);
assert(objno);
assert(addr_p);
*addr_p = objno[0];
#if SIZEOF_LONG<SIZEOF_UINT64_T
*addr_p |= ((uint64_t)objno[1]) << (8*sizeof(long));
#endif
return(SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5F_debug
*
* Purpose: Prints a file header to the specified stream. Each line
* is indented and the field name occupies the specified width
* number of characters.
*
* Errors:
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 1 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
herr_t
H5F_debug(H5F_t *f, haddr_t UNUSED addr, FILE * stream, intn indent,
intn fwidth)
{
FUNC_ENTER(H5F_debug, FAIL);
/* check args */
assert(f);
assert(H5F_addr_defined(addr));
assert(stream);
assert(indent >= 0);
assert(fwidth >= 0);
/* debug */
HDfprintf(stream, "%*sFile Boot Block...\n", indent, "");
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
"File name:",
f->name);
HDfprintf(stream, "%*s%-*s 0x%08x\n", indent, "", fwidth,
"Flags",
(unsigned) (f->shared->flags));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Reference count:",
(unsigned) (f->shared->nrefs));
HDfprintf(stream, "%*s%-*s 0x%08lx\n", indent, "", fwidth,
"Consistency flags:",
(unsigned long) (f->shared->consist_flags));
HDfprintf(stream, "%*s%-*s %a (abs)\n", indent, "", fwidth,
"Address of boot block:", f->shared->boot_addr);
HDfprintf(stream, "%*s%-*s %a (abs)\n", indent, "", fwidth,
"Base address:", f->shared->base_addr);
HDfprintf(stream, "%*s%-*s %a (rel)\n", indent, "", fwidth,
"Free list address:", f->shared->freespace_addr);
HDfprintf(stream, "%*s%-*s %a (rel)\n", indent, "", fwidth,
"Driver information block:", f->shared->driver_addr);
HDfprintf(stream, "%*s%-*s %lu bytes\n", indent, "", fwidth,
"Size of user block:",
(unsigned long) (f->shared->fcpl->userblock_size));
HDfprintf(stream, "%*s%-*s %u bytes\n", indent, "", fwidth,
"Size of file size_t type:",
(unsigned) (f->shared->fcpl->sizeof_size));
HDfprintf(stream, "%*s%-*s %u bytes\n", indent, "", fwidth,
"Size of file haddr_t type:",
(unsigned) (f->shared->fcpl->sizeof_addr));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Symbol table leaf node 1/2 rank:",
(unsigned) (f->shared->fcpl->sym_leaf_k));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Symbol table internal node 1/2 rank:",
(unsigned) (f->shared->fcpl->btree_k[H5B_SNODE_ID]));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Boot block version number:",
(unsigned) (f->shared->fcpl->bootblock_ver));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Free list version number:",
(unsigned) (f->shared->fcpl->freespace_ver));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Object directory version number:",
(unsigned) (f->shared->fcpl->objectdir_ver));
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Shared header version number:",
(unsigned) (f->shared->fcpl->sharedheader_ver));
HDfprintf(stream, "%*s%-*s %s\n", indent, "", fwidth,
"Root group symbol table entry:",
f->shared->root_grp ? "" : "(none)");
if (f->shared->root_grp) {
H5G_ent_debug(f, H5G_entof(f->shared->root_grp), stream,
indent+3, MAX(0, fwidth-3), HADDR_UNDEF);
}
FUNC_LEAVE(SUCCEED);
}
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