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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/****************/
/* Module Setup */
/****************/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
/* Interface initialization */
#define H5_INTERFACE_INIT_FUNC H5F__init_pub_interface
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Aprivate.h" /* Attributes */
#include "H5ACprivate.h" /* Metadata cache */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5FDprivate.h" /* File drivers */
#include "H5Gprivate.h" /* Groups */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File memory management */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
#include "H5SMprivate.h" /* Shared Object Header Messages */
#include "H5Tprivate.h" /* Datatypes */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* File ID class */
static const H5I_class_t H5I_FILE_CLS[1] = {{
H5I_FILE, /* ID class value */
H5I_CLASS_REUSE_IDS, /* Class flags */
0, /* # of reserved IDs for class */
(H5I_free_t)H5F_close /* Callback routine for closing objects of this class */
}};
/*--------------------------------------------------------------------------
NAME
H5F__init_pub_interface -- Initialize interface-specific information
USAGE
herr_t H5F__init_pub_interface()
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
Initializes any interface-specific data or routines. (Just calls
H5F_init() currently).
--------------------------------------------------------------------------*/
static herr_t
H5F__init_pub_interface(void)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_STATIC
/*
* Initialize the atom group for the file IDs.
*/
if(H5I_register_type(H5I_FILE_CLS) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to initialize interface")
ret_value = H5F_init();
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5F__init_pub_interface() */
/*-------------------------------------------------------------------------
* Function: H5F_init
*
* Purpose: Initialize the interface from some other layer.
*
* Return: Success: non-negative
* Failure: negative
*
* Programmer: Robb Matzke
* Wednesday, December 16, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5F_init(void)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* FUNC_ENTER() does all the work */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5F_init() */
/*-------------------------------------------------------------------------
* Function: H5F_term_interface
*
* Purpose: Terminate this interface: free all memory and reset global
* variables to their initial values. Release all ID groups
* associated with this interface.
*
* Return: Success: Positive if anything was done that might
* have affected other interfaces; zero
* otherwise.
*
* Failure: Never fails.
*
* Programmer: Robb Matzke
* Friday, February 19, 1999
*
*-------------------------------------------------------------------------
*/
int
H5F_term_interface(void)
{
int n = 0;
FUNC_ENTER_NOAPI_NOINIT_NOERR
if(H5_interface_initialize_g) {
if(H5I_nmembers(H5I_FILE) > 0) {
(void)H5I_clear_type(H5I_FILE, FALSE, FALSE);
n++; /*H5I*/
} /* end if */
else {
/* Make certain we've cleaned up all the shared file objects */
H5F_sfile_assert_num(0);
/* Destroy the file object id group */
(void)H5I_dec_type_ref(H5I_FILE);
n++; /*H5I*/
/* Mark closed */
H5_interface_initialize_g = 0;
} /* end else */
} /* end if */
FUNC_LEAVE_NOAPI(n)
} /* end H5F_term_interface() */
/*-------------------------------------------------------------------------
* Function: H5Fget_create_plist
*
* Purpose: Get an atom for a copy of the file-creation property list for
* this file. This function returns an atom with a copy of the
* properties used to create a file.
*
* Return: Success: template ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
*-------------------------------------------------------------------------
*/
hid_t
H5Fget_create_plist(hid_t file_id)
{
H5F_t *file; /* File info */
H5P_genplist_t *plist; /* Property list */
hid_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("i", "i", file_id);
/* check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
if(NULL == (plist = (H5P_genplist_t *)H5I_object(file->shared->fcpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
/* Create the property list object to return */
if((ret_value = H5P_copy_plist(plist, TRUE)) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "unable to copy file creation properties")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_create_plist() */
/*-------------------------------------------------------------------------
* Function: H5Fget_access_plist
*
* Purpose: Returns a copy of the file access property list of the
* specified file.
*
* NOTE: Make sure that, if you are going to overwrite
* information in the copied property list that was
* previously opened and assigned to the property list, then
* you must close it before overwriting the values.
*
* Return: Success: Object ID for a copy of the file access
* property list.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Wednesday, February 18, 1998
*
*-------------------------------------------------------------------------
*/
hid_t
H5Fget_access_plist(hid_t file_id)
{
H5F_t *f; /* File info */
hid_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("i", "i", file_id);
/* Check args */
if(NULL == (f = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
/* Retrieve the file's access property list */
if((ret_value = H5F_get_access_plist(f, TRUE)) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get file access property list")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_access_plist() */
/*-------------------------------------------------------------------------
* Function: H5Fget_obj_count
*
* Purpose: Public function returning the number of opened object IDs
* (files, datasets, groups and datatypes) in the same file.
*
* Return: Non-negative on success; negative on failure.
*
* Programmer: Raymond Lu
* Wednesday, Dec 5, 2001
*
*-------------------------------------------------------------------------
*/
ssize_t
H5Fget_obj_count(hid_t file_id, unsigned types)
{
H5F_t *f = NULL; /* File to query */
size_t obj_count = 0; /* Number of opened objects */
ssize_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("Zs", "iIu", file_id, types);
/* Check arguments */
if(file_id != (hid_t)H5F_OBJ_ALL && (NULL == (f = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id")
if(0 == (types & H5F_OBJ_ALL))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not an object type")
/* Perform the query */
if(H5F_get_obj_count(f, types, TRUE, &obj_count) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_BADITER, FAIL, "H5F_get_obj_count failed")
/* Set the return value */
ret_value = (ssize_t)obj_count;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_obj_count() */
/*-------------------------------------------------------------------------
* Function: H5Fget_object_ids
*
* Purpose: Public function to return a list of opened object IDs.
*
* Return: Non-negative on success; negative on failure.
*
* Programmer: Raymond Lu
* Wednesday, Dec 5, 2001
*
* Modification:
* Raymond Lu
* 24 September 2008
* Changed the return value to ssize_t and MAX_OBJTS to size_t to
* accommadate potential large number of objects.
*
*-------------------------------------------------------------------------
*/
ssize_t
H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *oid_list)
{
H5F_t *f = NULL; /* File to query */
size_t obj_id_count = 0; /* Number of open objects */
ssize_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE4("Zs", "iIuz*i", file_id, types, max_objs, oid_list);
/* Check arguments */
if(file_id != (hid_t)H5F_OBJ_ALL && (NULL == (f = (H5F_t *)H5I_object_verify(file_id, H5I_FILE))))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id")
if(0 == (types & H5F_OBJ_ALL))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not an object type")
if(!oid_list)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "object ID list is NULL")
/* Perform the query */
if(H5F_get_obj_ids(f, types, max_objs, oid_list, TRUE, &obj_id_count) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_BADITER, FAIL, "H5F_get_obj_ids failed")
/* Set the return value */
ret_value = (ssize_t)obj_id_count;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_obj_ids() */
/*-------------------------------------------------------------------------
* Function: H5Fget_vfd_handle
*
* Purpose: Returns a pointer to the file handle of the low-level file
* driver.
*
* Return: Success: non-negative value.
* Failure: negative.
*
* Programmer: Raymond Lu
* Sep. 16, 2002
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle)
{
H5F_t *file; /* File to query */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE3("e", "ii**x", file_id, fapl, file_handle);
/* Check args */
if(!file_handle)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file handle pointer")
/* Get the file */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file id")
/* Retrieve the VFD handle for the file */
if(H5F_get_vfd_handle(file, fapl, file_handle) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't retrieve VFD handle")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_vfd_handle() */
/*-------------------------------------------------------------------------
* Function: H5Fis_hdf5
*
* Purpose: Check the file signature to detect an HDF5 file.
*
* Bugs: This function is not robust: it only uses the default file
* driver when attempting to open the file when in fact it
* should use all known file drivers.
*
* Return: Success: TRUE/FALSE
*
* Failure: Negative
*
* Programmer: Unknown
*
* Modifications:
* Robb Matzke, 1999-08-02
* Rewritten to use the virtual file layer.
*-------------------------------------------------------------------------
*/
htri_t
H5Fis_hdf5(const char *name)
{
htri_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("t", "*s", name);
/* Check args and all the boring stuff. */
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADRANGE, FAIL, "no file name specified")
/* call the private is_HDF5 function */
if((ret_value = H5F_is_hdf5(name)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_NOTHDF5, FAIL, "unable open file")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fis_hdf5() */
/*-------------------------------------------------------------------------
* Function: H5Fcreate
*
* Purpose: This is the primary function for creating HDF5 files . The
* flags parameter determines whether an existing file will be
* overwritten or not. All newly created files are opened for
* both reading and writing. All flags may be combined with the
* bit-wise OR operator (`|') to change the behavior of the file
* create call.
*
* The more complex behaviors of a file's creation and access
* are controlled through the file-creation and file-access
* property lists. The value of H5P_DEFAULT for a template
* value indicates that the library should use the default
* values for the appropriate template.
*
* See also: H5Fpublic.h for the list of supported flags. H5Ppublic.h for
* the list of file creation and file access properties.
*
* Return: Success: A file ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
*-------------------------------------------------------------------------
*/
hid_t
H5Fcreate(const char *filename, unsigned flags, hid_t fcpl_id, hid_t fapl_id)
{
H5F_t *new_file = NULL; /*file struct for new file */
hid_t ret_value; /*return value */
FUNC_ENTER_API(FAIL)
H5TRACE4("i", "*sIuii", filename, flags, fcpl_id, fapl_id);
/* Check/fix arguments */
if(!filename || !*filename)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name")
/* In this routine, we only accept the following flags:
* H5F_ACC_EXCL and H5F_ACC_TRUNC
*/
if(flags & ~(H5F_ACC_EXCL | H5F_ACC_TRUNC))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid flags")
/* The H5F_ACC_EXCL and H5F_ACC_TRUNC flags are mutually exclusive */
if((flags & H5F_ACC_EXCL) && (flags & H5F_ACC_TRUNC))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "mutually exclusive flags for file creation")
/* Check file creation property list */
if(H5P_DEFAULT == fcpl_id)
fcpl_id = H5P_FILE_CREATE_DEFAULT;
else
if(TRUE != H5P_isa_class(fcpl_id, H5P_FILE_CREATE))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file create property list")
/* Check the file access property list */
if(H5P_DEFAULT == fapl_id)
fapl_id = H5P_FILE_ACCESS_DEFAULT;
else
if(TRUE != H5P_isa_class(fapl_id, H5P_FILE_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file access property list")
/*
* Adjust bit flags by turning on the creation bit and making sure that
* the EXCL or TRUNC bit is set. All newly-created files are opened for
* reading and writing.
*/
if (0==(flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC)))
flags |= H5F_ACC_EXCL; /*default*/
flags |= H5F_ACC_RDWR | H5F_ACC_CREAT;
/*
* Create a new file or truncate an existing file.
*/
if(NULL == (new_file = H5F_open(filename, flags, fcpl_id, fapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to create file")
/* Get an atom for the file */
if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file")
/* Keep this ID in file object structure */
new_file->file_id = ret_value;
done:
if(ret_value < 0 && new_file)
if(H5F_close(new_file) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file")
FUNC_LEAVE_API(ret_value)
} /* end H5Fcreate() */
/*-------------------------------------------------------------------------
* Function: H5Fopen
*
* Purpose: This is the primary function for accessing existing HDF5
* files. The FLAGS argument determines whether writing to an
* existing file will be allowed or not. All flags may be
* combined with the bit-wise OR operator (`|') to change the
* behavior of the file open call. The more complex behaviors
* of a file's access are controlled through the file-access
* property list.
*
* See Also: H5Fpublic.h for a list of possible values for FLAGS.
*
* Return: Success: A file ID
*
* Failure: FAIL
*
* Programmer: Unknown
*
* Modifications:
* Robb Matzke, 1997-07-18
* File struct creation and destruction is through H5F_new() and
* H5F_dest(). Reading the root symbol table entry is done with
* H5G_decode().
*
* Robb Matzke, 1997-09-23
* Most of the work is now done by H5F_open() since H5Fcreate()
* and H5Fopen() originally contained almost identical code.
*
* Robb Matzke, 1998-02-18
* Added better error checking for the flags and the file access
* property list. It used to be possible to make the library
* dump core by passing an object ID that was not a file access
* property list.
*
* Robb Matzke, 1999-08-02
* The file access property list is passed to the H5F_open() as
* object IDs.
*-------------------------------------------------------------------------
*/
hid_t
H5Fopen(const char *filename, unsigned flags, hid_t fapl_id)
{
H5F_t *new_file = NULL; /*file struct for new file */
hid_t ret_value; /*return value */
FUNC_ENTER_API(FAIL)
H5TRACE3("i", "*sIui", filename, flags, fapl_id);
/* Check/fix arguments. */
if(!filename || !*filename)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file name")
/* Reject undefined flags (~H5F_ACC_PUBLIC_FLAGS) and the H5F_ACC_TRUNC & H5F_ACC_EXCL flags */
if((flags & ~H5F_ACC_PUBLIC_FLAGS) ||
(flags & H5F_ACC_TRUNC) || (flags & H5F_ACC_EXCL))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid file open flags")
if(H5P_DEFAULT == fapl_id)
fapl_id = H5P_FILE_ACCESS_DEFAULT;
else
if(TRUE != H5P_isa_class(fapl_id, H5P_FILE_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not file access property list")
/* Open the file */
if(NULL == (new_file = H5F_open(filename, flags, H5P_FILE_CREATE_DEFAULT, fapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to open file")
/* Get an atom for the file */
if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle")
/* Keep this ID in file object structure */
new_file->file_id = ret_value;
done:
if(ret_value < 0 && new_file && H5F_try_close(new_file) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file")
FUNC_LEAVE_API(ret_value)
} /* end H5Fopen() */
/*-------------------------------------------------------------------------
* Function: H5Fflush
*
* Purpose: Flushes all outstanding buffers of a file to disk but does
* not remove them from the cache. The OBJECT_ID can be a file,
* dataset, group, attribute, or named data type.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, August 6, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fflush(hid_t object_id, H5F_scope_t scope)
{
H5F_t *f = NULL; /* File to flush */
H5O_loc_t *oloc = NULL; /* Object location for ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "iFs", object_id, scope);
switch(H5I_get_type(object_id)) {
case H5I_FILE:
if(NULL == (f = (H5F_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier")
break;
case H5I_GROUP:
{
H5G_t *grp;
if(NULL == (grp = (H5G_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid group identifier")
oloc = H5G_oloc(grp);
}
break;
case H5I_DATATYPE:
{
H5T_t *type;
if(NULL == (type = (H5T_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid type identifier")
oloc = H5T_oloc(type);
}
break;
case H5I_DATASET:
{
H5D_t *dset;
if(NULL == (dset = (H5D_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
oloc = H5D_oloc(dset);
}
break;
case H5I_ATTR:
{
H5A_t *attr;
if(NULL == (attr = (H5A_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid attribute identifier")
oloc = H5A_oloc(attr);
}
break;
case H5I_UNINIT:
case H5I_BADID:
case H5I_DATASPACE:
case H5I_REFERENCE:
case H5I_VFL:
case H5I_GENPROP_CLS:
case H5I_GENPROP_LST:
case H5I_ERROR_CLASS:
case H5I_ERROR_MSG:
case H5I_ERROR_STACK:
case H5I_NTYPES:
default:
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object")
} /* end switch */
if(!f) {
if(!oloc)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not assocated with a file")
f = oloc->file;
} /* end if */
if(!f)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not associated with a file")
/* Flush the file */
/*
* Nothing to do if the file is read only. This determination is
* made at the shared open(2) flags level, implying that opening a
* file twice, once for read-only and once for read-write, and then
* calling H5Fflush() with the read-only handle, still causes data
* to be flushed.
*/
if(H5F_ACC_RDWR & H5F_INTENT(f)) {
/* Flush other files, depending on scope */
if(H5F_SCOPE_GLOBAL == scope) {
/* Call the flush routine for mounted file hierarchies */
if(H5F_flush_mounts(f, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush mounted file hierarchy")
} /* end if */
else {
/* Call the flush routine, for this file */
if(H5F_flush(f, H5AC_dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information")
} /* end else */
} /* end if */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fflush() */
/*-------------------------------------------------------------------------
* Function: H5Fclose
*
* Purpose: This function closes the file specified by FILE_ID by
* flushing all data to storage, and terminating access to the
* file through FILE_ID. If objects (e.g., datasets, groups,
* etc.) are open in the file then the underlying storage is not
* closed until those objects are closed; however, all data for
* the file and the open objects is flushed.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Saturday, February 20, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fclose(hid_t file_id)
{
H5F_t *f = NULL;
int nref;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", file_id);
/* Check/fix arguments. */
if(H5I_FILE != H5I_get_type(file_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file ID")
/* Flush file if this is the last reference to this id and we have write
* intent, unless it will be flushed by the "shared" file being closed.
* This is only necessary to replicate previous behaviour, and could be
* disabled by an option/property to improve performance. */
if(NULL == (f = (H5F_t *)H5I_object(file_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier")
if((f->shared->nrefs > 1) && (H5F_INTENT(f) & H5F_ACC_RDWR)) {
if((nref = H5I_get_ref(file_id, FALSE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID ref count")
if(nref == 1)
if(H5F_flush(f, H5AC_dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache")
} /* end if */
/*
* Decrement reference count on atom. When it reaches zero the file will
* be closed.
*/
if(H5I_dec_app_ref(file_id) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTCLOSEFILE, FAIL, "decrementing file ID failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fclose() */
/*-------------------------------------------------------------------------
* Function: H5Freopen
*
* Purpose: Reopen a file. The new file handle which is returned points
* to the same file as the specified file handle. Both handles
* share caches and other information. The only difference
* between the handles is that the new handle is not mounted
* anywhere and no files are mounted on it.
*
* Return: Success: New file ID
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* Friday, October 16, 1998
*
*-------------------------------------------------------------------------
*/
hid_t
H5Freopen(hid_t file_id)
{
H5F_t *old_file = NULL;
H5F_t *new_file = NULL;
hid_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE1("i", "i", file_id);
/* Check arguments */
if(NULL == (old_file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
/* Get a new "top level" file struct, sharing the same "low level" file struct */
if(NULL == (new_file = H5F_new(old_file->shared, 0, H5P_FILE_CREATE_DEFAULT, H5P_FILE_ACCESS_DEFAULT, NULL)))
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to reopen file")
/* Duplicate old file's names */
new_file->open_name = H5MM_xstrdup(old_file->open_name);
new_file->actual_name = H5MM_xstrdup(old_file->actual_name);
new_file->extpath = H5MM_xstrdup(old_file->extpath);
if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle")
/* Keep this ID in file object structure */
new_file->file_id = ret_value;
done:
if(ret_value < 0 && new_file)
if(H5F_dest(new_file, H5AC_dxpl_id, FALSE) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file")
FUNC_LEAVE_API(ret_value)
} /* end H5Freopen() */
/*-------------------------------------------------------------------------
* Function: H5Fget_intent
*
* Purpose: Public API to retrieve the file's 'intent' flags passed
* during H5Fopen()
*
* Return: Non-negative on success/negative on failure
*
* Programmer: James Laird
* August 23, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_intent(hid_t file_id, unsigned *intent_flags)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*Iu", file_id, intent_flags);
/* If no intent flags were passed in, exit quietly */
if(intent_flags) {
H5F_t * file; /* Pointer to file structure */
/* Get the internal file structure */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
/* HDF5 uses some flags internally that users don't know about.
* Simplify things for them so that they only get either H5F_ACC_RDWR
* or H5F_ACC_RDONLY.
*/
if(H5F_INTENT(file) & H5F_ACC_RDWR)
*intent_flags = H5F_ACC_RDWR;
else
*intent_flags = H5F_ACC_RDONLY;
} /* end if */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_intent() */
/*-------------------------------------------------------------------------
* Function: H5Fget_freespace
*
* Purpose: Retrieves the amount of free space in the file.
*
* Return: Success: Amount of free space for type
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 6, 2003
*
*-------------------------------------------------------------------------
*/
hssize_t
H5Fget_freespace(hid_t file_id)
{
H5F_t *file; /* File object for file ID */
hsize_t tot_space; /* Amount of free space in the file */
hssize_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("Hs", "i", file_id);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* Go get the actual amount of free space in the file */
if(H5MF_get_freespace(file, H5AC_ind_dxpl_id, &tot_space, NULL) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file")
ret_value = (hssize_t)tot_space;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_freespace() */
/*-------------------------------------------------------------------------
* Function: H5Fget_filesize
*
* Purpose: Retrieves the file size of the HDF5 file. This function
* is called after an existing file is opened in order
* to learn the true size of the underlying file.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: David Pitt
* david.pitt@bigpond.com
* Apr 27, 2004
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_filesize(hid_t file_id, hsize_t *size)
{
H5F_t *file; /* File object for file ID */
haddr_t eof; /* End of file address */
haddr_t base_addr; /* Base address for the file */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*h", file_id, size);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* Go get the actual file size */
if(HADDR_UNDEF == (eof = H5FD_get_eof(file->shared->lf)))
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to get file size")
base_addr = H5FD_get_base_addr(file->shared->lf);
if(size)
*size = (hsize_t)(eof + base_addr); /* Convert relative base address for file to absolute address */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_filesize() */
/*-------------------------------------------------------------------------
* Function: H5Fget_file_image
*
* Purpose: If a buffer is provided (via the buf_ptr argument) and is
* big enough (size in buf_len argument), load *buf_ptr with
* an image of the open file whose ID is provided in the
* file_id parameter, and return the number of bytes copied
* to the buffer.
*
* If the buffer exists, but is too small to contain an image
* of the indicated file, return a negative number.
*
* Finally, if no buffer is provided, return the size of the
* buffer needed. This value is simply the eoa of the target
* file.
*
* Note that any user block is skipped.
*
* Also note that the function may not be used on files
* opened with either the split/multi file driver or the
* family file driver.
*
* In the former case, the sparse address space makes the
* get file image operation impractical, due to the size of
* the image typically required.
*
* In the case of the family file driver, the problem is
* the driver message in the super block, which will prevent
* the image being opened with any driver other than the
* family file driver -- which negates the purpose of the
* operation. This can be fixed, but no resources for
* this now.
*
* Return: Success: Bytes copied / number of bytes needed.
* Failure: negative value
*
* Programmer: John Mainzer
* 11/15/11
*
*-------------------------------------------------------------------------
*/
ssize_t
H5Fget_file_image(hid_t file_id, void *buf_ptr, size_t buf_len)
{
H5F_t *file; /* File object for file ID */
ssize_t ret_value; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE3("Zs", "i*xz", file_id, buf_ptr, buf_len);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* call private get_file_image function */
if((ret_value = H5F_get_file_image(file, buf_ptr, buf_len)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to get file image")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Fget_file_image() */
/*-------------------------------------------------------------------------
* Function: H5Fget_mdc_config
*
* Purpose: Retrieves the current automatic cache resize configuration
* from the metadata cache, and return it in *config_ptr.
*
* Note that the version field of *config_Ptr must be correctly
* filled in by the caller. This allows us to adapt for
* obsolete versions of the structure.
*
* Return: Success: SUCCEED
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/24/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_mdc_config(hid_t file_id, H5AC_cache_config_t *config_ptr)
{
H5F_t *file; /* File object for file ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*x", file_id, config_ptr);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
if((NULL == config_ptr) || (config_ptr->version != H5AC__CURR_CACHE_CONFIG_VERSION))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Bad config_ptr")
/* Go get the resize configuration */
if(H5AC_get_cache_auto_resize_config(file->shared->cache, config_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_auto_resize_config() failed.")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Fget_mdc_config() */
/*-------------------------------------------------------------------------
* Function: H5Fset_mdc_config
*
* Purpose: Sets the current metadata cache automatic resize
* configuration, using the contents of the instance of
* H5AC_cache_config_t pointed to by config_ptr.
*
* Return: Success: SUCCEED
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/24/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fset_mdc_config(hid_t file_id, H5AC_cache_config_t *config_ptr)
{
H5F_t *file; /* File object for file ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*x", file_id, config_ptr);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* set the resize configuration */
if(H5AC_set_cache_auto_resize_config(file->shared->cache, config_ptr) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "H5AC_set_cache_auto_resize_config() failed.")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Fset_mdc_config() */
/*-------------------------------------------------------------------------
* Function: H5Fget_mdc_hit_rate
*
* Purpose: Retrieves the current hit rate from the metadata cache.
* This rate is the overall hit rate since the last time
* the hit rate statistics were reset either manually or
* automatically.
*
* Return: Success: SUCCEED
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/24/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_mdc_hit_rate(hid_t file_id, double *hit_rate_ptr)
{
H5F_t *file; /* File object for file ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*d", file_id, hit_rate_ptr);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
if(NULL == hit_rate_ptr)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL hit rate pointer")
/* Go get the current hit rate */
if(H5AC_get_cache_hit_rate(file->shared->cache, hit_rate_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_hit_rate() failed.")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Fget_mdc_hit_rate() */
/*-------------------------------------------------------------------------
* Function: H5Fget_mdc_size
*
* Purpose: Retrieves the maximum size, minimum clean size, current
* size, and current number of entries from the metadata
* cache associated with the specified file. If any of
* the ptr parameters are NULL, the associated datum is
* not returned.
*
* Return: Success: SUCCEED
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/24/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_mdc_size(hid_t file_id, size_t *max_size_ptr, size_t *min_clean_size_ptr,
size_t *cur_size_ptr, int *cur_num_entries_ptr)
{
H5F_t *file; /* File object for file ID */
int32_t cur_num_entries;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE5("e", "i*z*z*z*Is", file_id, max_size_ptr, min_clean_size_ptr,
cur_size_ptr, cur_num_entries_ptr);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* Go get the size data */
if(H5AC_get_cache_size(file->shared->cache, max_size_ptr,
min_clean_size_ptr, cur_size_ptr, &cur_num_entries) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_size() failed.")
if(cur_num_entries_ptr != NULL)
*cur_num_entries_ptr = (int)cur_num_entries;
done:
FUNC_LEAVE_API(ret_value)
} /* H5Fget_mdc_size() */
/*-------------------------------------------------------------------------
* Function: H5Freset_mdc_hit_rate_stats
*
* Purpose: Reset the hit rate statistic whose current value can
* be obtained via the H5Fget_mdc_hit_rate() call. Note
* that this statistic will also be reset once per epoch
* by the automatic cache resize code if it is enabled.
*
* It is probably a bad idea to call this function unless
* you are controlling cache size from your program instead
* of using our cache size control code.
*
* Return: Success: SUCCEED
* Failure: FAIL
*
* Programmer: John Mainzer
* 3/24/05
*
*-------------------------------------------------------------------------
*/
herr_t
H5Freset_mdc_hit_rate_stats(hid_t file_id)
{
H5F_t *file; /* File object for file ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", file_id);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* Reset the hit rate statistic */
if(H5AC_reset_cache_hit_rate_stats(file->shared->cache) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "can't reset cache hit rate")
done:
FUNC_LEAVE_API(ret_value)
} /* H5Freset_mdc_hit_rate_stats() */
/*-------------------------------------------------------------------------
* Function: H5Fget_name
*
* Purpose: Gets the name of the file to which object OBJ_ID belongs.
* If `name' is non-NULL then write up to `size' bytes into that
* buffer and always return the length of the entry name.
* Otherwise `size' is ignored and the function does not store the name,
* just returning the number of characters required to store the name.
* If an error occurs then the buffer pointed to by `name' (NULL or non-NULL)
* is unchanged and the function returns a negative value.
*
* Note: This routine returns the name that was used to open the file,
* not the actual name after resolving symlinks, etc.
*
* Return: Success: The length of the file name
* Failure: Negative
*
* Programmer: Raymond Lu
* June 29, 2004
*
*-------------------------------------------------------------------------
*/
ssize_t
H5Fget_name(hid_t obj_id, char *name/*out*/, size_t size)
{
H5F_t *f; /* Top file in mount hierarchy */
size_t len;
ssize_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE3("Zs", "ixz", obj_id, name, size);
/* For file IDs, get the file object directly */
/* (This prevents the H5G_loc() call from returning the file pointer for
* the top file in a mount hierarchy)
*/
if(H5I_get_type(obj_id) == H5I_FILE ) {
if(NULL == (f = (H5F_t *)H5I_object(obj_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
} /* end if */
else {
H5G_loc_t loc; /* Object location */
/* Get symbol table entry */
if(H5G_loc(obj_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object ID")
f = loc.oloc->file;
} /* end else */
len = HDstrlen(H5F_OPEN_NAME(f));
if(name) {
HDstrncpy(name, H5F_OPEN_NAME(f), MIN(len + 1,size));
if(len >= size)
name[size-1]='\0';
} /* end if */
/* Set return value */
ret_value = (ssize_t)len;
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_name() */
/*-------------------------------------------------------------------------
* Function: H5Fget_info
* 1. Get storage size for superblock extension if there is one
* 2. Get the amount of btree and heap storage for entries
* in the SOHM table if there is one.
* Consider success when there is no superblock extension and/or SOHM table
*
* Return: Success: non-negative on success
* Failure: Negative
*
* Programmer: Vailin Choi
* July 11, 2007
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fget_info(hid_t obj_id, H5F_info_t *finfo)
{
H5F_t *f; /* Top file in mount hierarchy */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE2("e", "i*x", obj_id, finfo);
/* Check args */
if(!finfo)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
/* For file IDs, get the file object directly */
/* (This prevents the H5G_loc() call from returning the file pointer for
* the top file in a mount hierarchy)
*/
if(H5I_get_type(obj_id) == H5I_FILE ) {
if(NULL == (f = (H5F_t *)H5I_object(obj_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
} /* end if */
else {
H5G_loc_t loc; /* Object location */
/* Get symbol table entry */
if(H5G_loc(obj_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object ID")
f = loc.oloc->file;
} /* end else */
HDassert(f->shared);
/* Reset file info struct */
HDmemset(finfo, 0, sizeof(H5F_info_t));
/* Check for superblock extension info */
if(H5F_super_size(f, H5AC_ind_dxpl_id, NULL, &finfo->super_ext_size) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "Unable to retrieve superblock extension size")
/* Check for SOHM info */
if(H5F_addr_defined(f->shared->sohm_addr))
if(H5SM_ih_size(f, H5AC_ind_dxpl_id, finfo) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "Unable to retrieve SOHM btree & heap storage info")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fget_info() */
/*-------------------------------------------------------------------------
* Function: H5Fclear_elink_file_cache
*
* Purpose: Releases the external file cache associated with the
* provided file, potentially closing any cached files
* unless they are held open from somewhere\ else.
*
* Return: Success: non-negative
* Failure: negative
*
* Programmer: Neil Fortner; December 30, 2010
*
*-------------------------------------------------------------------------
*/
herr_t
H5Fclear_elink_file_cache(hid_t file_id)
{
H5F_t *file; /* File */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", file_id);
/* Check args */
if(NULL == (file = (H5F_t *)H5I_object_verify(file_id, H5I_FILE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a file ID")
/* Release the EFC */
if(file->shared->efc)
if(H5F_efc_release(file->shared->efc) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, FAIL, "can't release external file cache")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Fclear_elink_file_cache() */
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