path: root/src/H5FA.c

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*-------------------------------------------------------------------------
 *
 * Created:     H5FA.c
 *              April 2009
 *              Vailin Choi <vchoi@hdfgroup.org>
 *
 * Purpose:     Implements a Fixed Array for storing elements
 *              of datasets with fixed dimensions.
 *
 *-------------------------------------------------------------------------
 */

/**********************/
/* Module Declaration */
/**********************/

#include "H5FAmodule.h"         /* This source code file is part of the H5FA module */

/***********************/
/* Other Packages Used */
/***********************/


/***********/
/* Headers */
/***********/
#include "H5private.h"		/* Generic Functions			*/
#include "H5Eprivate.h"		/* Error handling		  	*/
#include "H5FApkg.h"		/* Fixed Arrays				*/
#include "H5FLprivate.h"	/* Free Lists                           */
#include "H5VMprivate.h"         /* Vector functions			*/


/****************/
/* Local Macros */
/****************/


/******************/
/* Local Typedefs */
/******************/


/********************/
/* Package Typedefs */
/********************/


/********************/
/* Local Prototypes */
/********************/
static H5FA_t *H5FA__new(H5F_t *f, haddr_t fa_addr, hbool_t from_open,
    void *ctx_udata);


/*********************/
/* Package Variables */
/*********************/

/* Package initialization variable */
hbool_t H5_PKG_INIT_VAR = FALSE;

/* Fixed array client ID to class mapping */

/* Remember to add client ID to H5FA_cls_id_t in H5FAprivate.h when adding a new
 * client class..
 */
const H5FA_class_t *const H5FA_client_class_g[] = {
    H5FA_CLS_CHUNK,             /* 0 - H5FA_CLS_CHUNK_ID                */
    H5FA_CLS_FILT_CHUNK,        /* 1 - H5FA_CLS_FILT_CHUNK_ID           */
    H5FA_CLS_TEST,              /* ? - H5FA_CLS_TEST_ID                 */
};


/*****************************/
/* Library Private Variables */
/*****************************/


/*******************/
/* Local Variables */
/*******************/

/* Declare a free list to manage the H5FA_t struct */
H5FL_DEFINE_STATIC(H5FA_t);

/* Declare a PQ free list to manage the element */
H5FL_BLK_DEFINE(fa_native_elmt);



/*-------------------------------------------------------------------------
 * Function:	H5FA__new
 *
 * Purpose:	Allocate and initialize a new fixe array wrapper in memory
 *
 * Return:	Pointer to farray wrapper success
 *              NULL on failure
 *
 * Programmer:	Quincey Koziol
 *		koziol@lbl.gov
 *		Oct 17 2016
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(STATIC, ERR,
H5FA_t *, NULL, NULL,
H5FA__new(H5F_t *f, haddr_t fa_addr, hbool_t from_open, void *ctx_udata))

    /* Local variables */
    H5FA_t *fa = NULL;          /* Pointer to new fixed array */
    H5FA_hdr_t *hdr = NULL;     /* The fixed array header information */

    /*
     * Check arguments.
     */
    HDassert(f);
    HDassert(H5F_addr_defined(fa_addr));

    /* Allocate fixed array wrapper */
    if(NULL == (fa = H5FL_CALLOC(H5FA_t)))
	H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array info")

    /* Lock the array header into memory */
    if(NULL == (hdr = H5FA__hdr_protect(f, fa_addr, ctx_udata, H5AC__READ_ONLY_FLAG)))
	H5E_THROW(H5E_CANTPROTECT, "unable to load fixed array header")

    /* Check for pending array deletion */
    if(from_open && hdr->pending_delete)
        H5E_THROW(H5E_CANTOPENOBJ, "can't open fixed array pending deletion")

    /* Point fixed array wrapper at header and bump it's ref count */
    fa->hdr = hdr;
    if(H5FA__hdr_incr(fa->hdr) < 0)
	H5E_THROW(H5E_CANTINC, "can't increment reference count on shared array header")

    /* Increment # of files using this array header */
    if(H5FA__hdr_fuse_incr(fa->hdr) < 0)
	H5E_THROW(H5E_CANTINC, "can't increment file reference count on shared array header")

    /* Set file pointer for this array open context */
    fa->f = f;

    /* Set the return value */
    ret_value = fa;

CATCH

    if(hdr && H5FA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
	H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array header")
    if(!ret_value)
        if(fa && H5FA_close(fa) < 0)
            H5E_THROW(H5E_CLOSEERROR, "unable to close fixed array")

END_FUNC(STATIC)  /* end H5FA__new() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_create
 *
 * Purpose:     Creates a new fixed array (header) in the file.
 *
 * Return:      Pointer to fixed array wrapper on success
 *              NULL on failure
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
H5FA_t *, NULL, NULL,
H5FA_create(H5F_t *f, const H5FA_create_t *cparam, void *ctx_udata))

    /* Local variables */
    H5FA_t *fa = NULL;          /* Pointer to new fixed array */
    haddr_t fa_addr;            /* Fixed array header address */

    /*
     * Check arguments.
     */
    HDassert(f);
    HDassert(cparam);

    /* H5FA interface sanity check */
    HDcompile_assert(H5FA_NUM_CLS_ID == NELMTS(H5FA_client_class_g));

    /* Create fixed array header */
    if(HADDR_UNDEF == (fa_addr = H5FA__hdr_create(f, cparam, ctx_udata)))
        H5E_THROW(H5E_CANTINIT, "can't create fixed array header")

    /* Allocate and initialize new fixed array wrapper */
    if(NULL == (fa = H5FA__new(f, fa_addr, FALSE, ctx_udata)))
	H5E_THROW(H5E_CANTINIT, "allocation and/or initialization failed for fixed array wrapper")

    /* Set the return value */
    ret_value = fa;

CATCH

    if(!ret_value)
        if(fa && H5FA_close(fa) < 0)
            H5E_THROW(H5E_CLOSEERROR, "unable to close fixed array")

END_FUNC(PRIV)  /* end H5FA_create() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_open
 *
 * Purpose:     Opens an existing fixed array in the file.
 *
 * Return:      Pointer to array wrapper on success
 *              NULL on failure
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
H5FA_t *, NULL, NULL,
H5FA_open(H5F_t *f, haddr_t fa_addr, void *ctx_udata))

    /* Local variables */
    H5FA_t *fa = NULL;          /* Pointer to new fixed array wrapper */

    /*
     * Check arguments.
     */
    HDassert(f);
    HDassert(H5F_addr_defined(fa_addr));

    /* Allocate and initialize new fixed array wrapper */
    if(NULL == (fa = H5FA__new(f, fa_addr, TRUE, ctx_udata)))
	H5E_THROW(H5E_CANTINIT, "allocation and/or initialization failed for fixed array wrapper")

    /* Set the return value */
    ret_value = fa;

CATCH

    if(!ret_value)
        if(fa && H5FA_close(fa) < 0)
            H5E_THROW(H5E_CLOSEERROR, "unable to close fixed array")

END_FUNC(PRIV)  /* end H5FA_open() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_get_nelmts
 *
 * Purpose:     Query the current number of elements in array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, NOERR,
herr_t, SUCCEED, -,
H5FA_get_nelmts(const H5FA_t *fa, hsize_t *nelmts))

    /* Local variables */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(nelmts);

    /* Retrieve the current number of elements in the fixed array */
    *nelmts = fa->hdr->stats.nelmts;

END_FUNC(PRIV)  /* end H5FA_get_nelmts() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_get_addr
 *
 * Purpose:     Query the address of the array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, NOERR,
herr_t, SUCCEED, -,
H5FA_get_addr(const H5FA_t *fa, haddr_t *addr))

    /* Local variables */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(fa->hdr);
    HDassert(addr);

    /* Retrieve the address of the fixed array's header */
    *addr = fa->hdr->addr;

END_FUNC(PRIV)  /* end H5FA_get_addr() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_set
 *
 * Purpose:     Set an element of a fixed array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_set(const H5FA_t *fa, hsize_t idx, const void *elmt))

    /* Local variables */
    H5FA_hdr_t *hdr = fa->hdr;          /* Header for fixed array */
    H5FA_dblock_t *dblock = NULL;       /* Pointer to fixed array Data block */
    H5FA_dblk_page_t *dblk_page = NULL; /* Pointer to fixed array Data block page */
    unsigned dblock_cache_flags = H5AC__NO_FLAGS_SET;    /* Flags to unprotecting fixed array Data block */
    unsigned dblk_page_cache_flags = H5AC__NO_FLAGS_SET; /* Flags to unprotecting FIxed Array Data block page */
    hbool_t hdr_dirty = FALSE;          /* Whether header information changed */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(fa->hdr);

    /* Set the shared array header's file context for this operation */
    hdr->f = fa->f;

    /* Check if we need to create the fixed array data block */
    if(!H5F_addr_defined(hdr->dblk_addr)) {
        /* Create the data block */
        hdr->dblk_addr = H5FA__dblock_create(hdr, &hdr_dirty);
        if(!H5F_addr_defined(hdr->dblk_addr))
            H5E_THROW(H5E_CANTCREATE, "unable to create fixed array data block")
    } /* end if */

    HDassert(idx < hdr->cparam.nelmts);

    /* Protect data block */
    if(NULL == (dblock = H5FA__dblock_protect(hdr, hdr->dblk_addr, H5AC__NO_FLAGS_SET)))
        H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block, address = %llu", (unsigned long long)hdr->dblk_addr)

    /* Check for paging data block */
    if(!dblock->npages) {
        /* Set element in data block */
        HDmemcpy(((uint8_t *)dblock->elmts) + (hdr->cparam.cls->nat_elmt_size * idx), elmt, hdr->cparam.cls->nat_elmt_size);
        dblock_cache_flags |= H5AC__DIRTIED_FLAG;
    } /* end if */
    else { /* paging */
        size_t  page_idx;      		/* Index of page within data block */
        size_t  dblk_page_nelmts;      	/* # of elements in a data block page */
        size_t  elmt_idx;		/* Element index within the page */
        haddr_t dblk_page_addr;		/* Address of data block page */

        /* Compute the page & element index */
        page_idx = (size_t)(idx / dblock->dblk_page_nelmts);
        elmt_idx = (size_t)(idx % dblock->dblk_page_nelmts);

        /* Get the address of the data block page */
        dblk_page_addr = dblock->addr + H5FA_DBLOCK_PREFIX_SIZE(dblock) +
                        ((hsize_t)page_idx * dblock->dblk_page_size);

        /* Check for using last page, to set the number of elements on the page */
        if((page_idx + 1) == dblock->npages)
            dblk_page_nelmts = dblock->last_page_nelmts;
        else
            dblk_page_nelmts = dblock->dblk_page_nelmts;

        /* Check if the page has been created yet */
        if(!H5VM_bit_get(dblock->dblk_page_init, page_idx)) {
            /* Create the data block page */
            if(H5FA__dblk_page_create(hdr, dblk_page_addr, dblk_page_nelmts) < 0)
                H5E_THROW(H5E_CANTCREATE, "unable to create data block page")

	    /* Mark data block page as initialized in data block */
	    H5VM_bit_set(dblock->dblk_page_init, page_idx, TRUE);
	    dblock_cache_flags |= H5AC__DIRTIED_FLAG;
	} /* end if */

        /* Protect the data block page */
	if(NULL == (dblk_page = H5FA__dblk_page_protect(hdr, dblk_page_addr, dblk_page_nelmts, H5AC__NO_FLAGS_SET)))
	    H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block page, address = %llu", (unsigned long long)dblk_page_addr)

        /* Set the element in the data block page */
        HDmemcpy(((uint8_t *)dblk_page->elmts) + (hdr->cparam.cls->nat_elmt_size * elmt_idx), elmt, hdr->cparam.cls->nat_elmt_size);
        dblk_page_cache_flags |= H5AC__DIRTIED_FLAG;
    } /* end else */

CATCH
    /* Check for header modified */
    if(hdr_dirty)
        if(H5FA__hdr_modified(hdr) < 0)
            H5E_THROW(H5E_CANTMARKDIRTY, "unable to mark fixed array header as modified")

    /* Release resources */
    if(dblock && H5FA__dblock_unprotect(dblock, dblock_cache_flags) < 0)
        H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array data block")
    if(dblk_page && H5FA__dblk_page_unprotect(dblk_page, dblk_page_cache_flags) < 0)
        H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array data block page")

END_FUNC(PRIV)  /* end H5FA_set() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_get
 *
 * Purpose:     Get an element of a fixed array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_get(const H5FA_t *fa, hsize_t idx, void *elmt))

    /* Local variables */
    H5FA_hdr_t *hdr = fa->hdr;          /* Header for FA */
    H5FA_dblock_t *dblock = NULL;       /* Pointer to data block for FA */
    H5FA_dblk_page_t *dblk_page = NULL; /* Pointer to data block page for FA */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(fa->hdr);

    /* Set the shared array header's file context for this operation */
    hdr->f = fa->f;

    /* Check if the fixed array data block has been allocated on disk yet */
    if(!H5F_addr_defined(hdr->dblk_addr)) {
        /* Call the class's 'fill' callback */
        if((hdr->cparam.cls->fill)(elmt, (size_t)1) < 0)
            H5E_THROW(H5E_CANTSET, "can't set element to class's fill value")
    } /* end if */
    else {
        /* Get the data block */
        HDassert(H5F_addr_defined(hdr->dblk_addr));
        if(NULL == (dblock = H5FA__dblock_protect(hdr, hdr->dblk_addr, H5AC__READ_ONLY_FLAG)))
            H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block, address = %llu", (unsigned long long)hdr->dblk_addr)

        /* Check for paged data block */
        if(!dblock->npages)
            /* Retrieve element from data block */
            HDmemcpy(elmt, ((uint8_t *)dblock->elmts) + (hdr->cparam.cls->nat_elmt_size * idx), hdr->cparam.cls->nat_elmt_size);
        else { /* paging */
            size_t  page_idx;           /* Index of page within data block */

            /* Compute the page index */
            page_idx = (size_t)(idx / dblock->dblk_page_nelmts);

            /* Check if the page is defined yet */
            if(!H5VM_bit_get(dblock->dblk_page_init, page_idx)) {
                /* Call the class's 'fill' callback */
                if((hdr->cparam.cls->fill)(elmt, (size_t)1) < 0)
                    H5E_THROW(H5E_CANTSET, "can't set element to class's fill value")

                /* We've retrieved the value, leave now */
                H5_LEAVE(SUCCEED)
            } /* end if */
            else { /* get the page */
                size_t  dblk_page_nelmts;	/* # of elements in a data block page */
                size_t  elmt_idx;		/* Element index within the page */
                haddr_t dblk_page_addr;		/* Address of data block page */

                /* Compute the element index */
                elmt_idx = (size_t)(idx % dblock->dblk_page_nelmts);

                /* Compute the address of the data block */
                dblk_page_addr = dblock->addr + H5FA_DBLOCK_PREFIX_SIZE(dblock) + ((hsize_t)page_idx * dblock->dblk_page_size);

                /* Check for using last page, to set the number of elements on the page */
                if((page_idx + 1) == dblock->npages)
                    dblk_page_nelmts = dblock->last_page_nelmts;
                else
                    dblk_page_nelmts = dblock->dblk_page_nelmts;

                /* Protect the data block page */
                if(NULL == (dblk_page = H5FA__dblk_page_protect(hdr, dblk_page_addr, dblk_page_nelmts, H5AC__READ_ONLY_FLAG)))
                    H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array data block page, address = %llu", (unsigned long long)dblk_page_addr)

                /* Retrieve element from data block */
                HDmemcpy(elmt, ((uint8_t *)dblk_page->elmts) + (hdr->cparam.cls->nat_elmt_size * elmt_idx), hdr->cparam.cls->nat_elmt_size);
            } /* end else */
        } /* end else */
    } /* end else */

CATCH
    if(dblock && H5FA__dblock_unprotect(dblock, H5AC__NO_FLAGS_SET) < 0)
        H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array data block")
    if(dblk_page && H5FA__dblk_page_unprotect(dblk_page, H5AC__NO_FLAGS_SET) < 0)
        H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array data block page")

END_FUNC(PRIV)  /* end H5FA_get() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_close
 *
 * Purpose:     Close a fixed array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_close(H5FA_t *fa))

    /* Local variables */
    hbool_t pending_delete = FALSE;     /* Whether the array is pending deletion */
    haddr_t fa_addr = HADDR_UNDEF;      /* Address of array (for deletion) */

    /*
     * Check arguments.
     */
    HDassert(fa);

    /* Close the header, if it was set */
    if(fa->hdr) {
        /* Decrement file reference & check if this is the last open fixed array using the shared array header */
        if(0 == H5FA__hdr_fuse_decr(fa->hdr)) {
            /* Set the shared array header's file context for this operation */
            fa->hdr->f = fa->f;

            /* Shut down anything that can't be put in the header's 'flush' callback */

            /* Check for pending array deletion */
            if(fa->hdr->pending_delete) {
                /* Set local info, so array deletion can occur after decrementing the
                 *  header's ref count
                 */
                pending_delete = TRUE;
                fa_addr = fa->hdr->addr;
            } /* end if */
        } /* end if */

        /* Check for pending array deletion */
        if(pending_delete) {
            H5FA_hdr_t *hdr;            /* Another pointer to fixed array header */

#ifndef NDEBUG
{
    unsigned hdr_status = 0;         /* Header's status in the metadata cache */

    /* Check the header's status in the metadata cache */
    if(H5AC_get_entry_status(fa->f, fa_addr, &hdr_status) < 0)
        H5E_THROW(H5E_CANTGET, "unable to check metadata cache status for fixed array header")

    /* Sanity checks on header */
    HDassert(hdr_status & H5AC_ES__IN_CACHE);
    HDassert(hdr_status & H5AC_ES__IS_PINNED);
    HDassert(!(hdr_status & H5AC_ES__IS_PROTECTED));
}
#endif /* NDEBUG */

            /* Lock the array header into memory */
            /* (OK to pass in NULL for callback context, since we know the header must be in the cache) */
            if(NULL == (hdr = H5FA__hdr_protect(fa->f, fa_addr, NULL, H5AC__NO_FLAGS_SET)))
                H5E_THROW(H5E_CANTLOAD, "unable to load fixed array header")

            /* Set the shared array header's file context for this operation */
            hdr->f = fa->f;

            /* Decrement the reference count on the array header */
            /* (don't put in H5FA_hdr_fuse_decr() as the array header may be evicted
             *  immediately -QAK)
             */
            if(H5FA__hdr_decr(fa->hdr) < 0)
                H5E_THROW(H5E_CANTDEC, "can't decrement reference count on shared array header")

            /* Delete array, starting with header (unprotects header) */
            if(H5FA__hdr_delete(hdr) < 0)
                H5E_THROW(H5E_CANTDELETE, "unable to delete fixed array")
        } /* end if */
        else {
            /* Decrement the reference count on the array header */
            /* (don't put in H5FA_hdr_fuse_decr() as the array header may be evicted
             *  immediately -QAK)
             */
            if(H5FA__hdr_decr(fa->hdr) < 0)
                H5E_THROW(H5E_CANTDEC, "can't decrement reference count on shared array header")
        } /* end else */
    } /* end if */

    /* Release the fixed array wrapper */
    fa = H5FL_FREE(H5FA_t, fa);

CATCH

END_FUNC(PRIV)  /* end H5FA_close() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_delete
 *
 * Purpose:     Delete a fixed array
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_delete(H5F_t *f, haddr_t fa_addr, void *ctx_udata))

    /* Local variables */
    H5FA_hdr_t *hdr = NULL;             /* The fixed array header information */

    /*
     * Check arguments.
     */
    HDassert(f);
    HDassert(H5F_addr_defined(fa_addr));

    /* Lock the array header into memory */
    if(NULL == (hdr = H5FA__hdr_protect(f, fa_addr, ctx_udata, H5AC__NO_FLAGS_SET)))
        H5E_THROW(H5E_CANTPROTECT, "unable to protect fixed array header, address = %llu", (unsigned long long)fa_addr)

    /* Check for files using shared array header */
    if(hdr->file_rc)
        hdr->pending_delete = TRUE;
    else {
        /* Set the shared array header's file context for this operation */
        hdr->f = f;

        /* Delete array now, starting with header (unprotects header) */
        if(H5FA__hdr_delete(hdr) < 0)
            H5E_THROW(H5E_CANTDELETE, "unable to delete fixed array")
        hdr = NULL;
    } /* end if */

CATCH

    /* Unprotect the header, if an error occurred */
    if(hdr && H5FA__hdr_unprotect(hdr, H5AC__NO_FLAGS_SET) < 0)
        H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array header")

END_FUNC(PRIV)  /* end H5FA_delete() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_iterate
 *
 * Purpose:     Iterate over the elements of a fixed array
 *
 * Note:        This is not very efficient, we should be iterating directly
 *              over the fixed array's direct block [pages].
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Vailin Choi
 *              Thursday, April 30, 2009
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_iterate(H5FA_t *fa, H5FA_operator_t op, void *udata))

    /* Local variables */
    uint8_t     *elmt = NULL;
    hsize_t     u;

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(op);
    HDassert(udata);

    /* Allocate space for a native array element */
    if(NULL == (elmt = H5FL_BLK_MALLOC(fa_native_elmt, fa->hdr->cparam.cls->nat_elmt_size)))
        H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array element")

    /* Iterate over all elements in array */
    for(u = 0; u < fa->hdr->stats.nelmts; u++) {
        int cb_ret;     /* Return value from callback */

        /* Get array element */
        if(H5FA_get(fa, u, elmt) < 0)
            H5E_THROW(H5E_CANTGET, "unable to delete fixed array")

        /* Make callback */
        if((cb_ret = (*op)(u, elmt, udata)) < 0) {
            H5E_PRINTF(H5E_BADITER, "iterator function failed");
            H5_LEAVE(cb_ret)
        } /* end if */
    } /* end for */

CATCH

    if(elmt)
        elmt = H5FL_BLK_FREE(fa_native_elmt, elmt);

END_FUNC(PRIV)  /* end H5FA_iterate() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_depend
 *
 * Purpose:     Make a child flush dependency between the fixed array
 *              and another piece of metadata in the file.
 *
 * Return:      SUCCEED/FAIL
 *
 * Programmer:  Dana Robinson
 *              Fall 2012
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, ERR,
herr_t, SUCCEED, FAIL,
H5FA_depend(H5FA_t *fa, H5AC_proxy_entry_t *parent))

    /* Local variables */
    H5FA_hdr_t *hdr = fa->hdr;          /* Header for FA */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(hdr);
    HDassert(parent);

    /*
     * Check to see if a flush dependency between the fixed array
     * and another data structure in the file has already been set up.
     * If it hasn't, do so now.
     */
    if(NULL == hdr->parent) {
        /* Sanity check */
        HDassert(hdr->top_proxy);

        /* Set the shared array header's file context for this operation */
        hdr->f = fa->f;

        /* Add the fixed array as a child of the parent (proxy) */
        if(H5AC_proxy_entry_add_child(parent, hdr->f, hdr->top_proxy) < 0)
            H5E_THROW(H5E_CANTSET, "unable to add fixed array as child of proxy")
        hdr->parent = parent;
    } /* end if */

CATCH

END_FUNC(PRIV)  /* end H5FA_depend() */


/*-------------------------------------------------------------------------
 * Function:    H5FA_patch_file
 *
 * Purpose:     Patch the top-level file pointer contained in fa
 *              to point to idx_info->f if they are different.
 *              This is possible because the file pointer in fa can be
 *              closed out if fa remains open.
 *
 * Return:      SUCCEED
 *
 *-------------------------------------------------------------------------
 */
BEGIN_FUNC(PRIV, NOERR,
herr_t, SUCCEED, -,
H5FA_patch_file(H5FA_t *fa, H5F_t *f))

    /* Local variables */

    /*
     * Check arguments.
     */
    HDassert(fa);
    HDassert(f);

    if(fa->f != f || fa->hdr->f != f)
        fa->f = fa->hdr->f = f;

END_FUNC(PRIV)  /* end H5FA_patch_file() */