1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5FAcache.c
* Jul 2 2009
* Quincey Koziol <koziol@hdfgroup.org>
*
* Purpose: Implement fixed array metadata cache methods.
*
*-------------------------------------------------------------------------
*/
/**********************/
/* Module Declaration */
/**********************/
#include "H5FAmodule.h" /* This source code file is part of the H5FA module */
/***********************/
/* Other Packages Used */
/***********************/
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FApkg.h" /* Fixed Arrays */
#include "H5MFprivate.h" /* File memory management */
#include "H5VMprivate.h" /* Vectors and arrays */
#include "H5WBprivate.h" /* Wrapped Buffers */
/****************/
/* Local Macros */
/****************/
/* Fixed Array format version #'s */
#define H5FA_HDR_VERSION 0 /* Header */
#define H5FA_DBLOCK_VERSION 0 /* Data block */
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/* Metadata cache (H5AC) callbacks */
static herr_t H5FA__cache_hdr_get_load_size(const void *udata, size_t *image_len);
static void *H5FA__cache_hdr_deserialize(const void *image, size_t len,
void *udata, hbool_t *dirty);
static herr_t H5FA__cache_hdr_image_len(const void *thing, size_t *image_len);
static herr_t H5FA__cache_hdr_serialize(const H5F_t *f, void *image, size_t len,
void *thing);
static herr_t H5FA__cache_hdr_free_icr(void *thing);
static herr_t H5FA__cache_dblock_get_load_size(const void *udata, size_t *image_len);
static void *H5FA__cache_dblock_deserialize(const void *image, size_t len,
void *udata, hbool_t *dirty);
static herr_t H5FA__cache_dblock_image_len(const void *thing, size_t *image_len);
static herr_t H5FA__cache_dblock_serialize(const H5F_t *f, void *image, size_t len,
void *thing);
static herr_t H5FA__cache_dblock_free_icr(void *thing);
static herr_t H5FA__cache_dblock_fsf_size(const void *thing, size_t *fsf_size);
static herr_t H5FA__cache_dblk_page_get_load_size(const void *udata, size_t *image_len);
static void *H5FA__cache_dblk_page_deserialize(const void *image, size_t len,
void *udata, hbool_t *dirty);
static herr_t H5FA__cache_dblk_page_image_len(const void *thing, size_t *image_len);
static herr_t H5FA__cache_dblk_page_serialize(const H5F_t *f, void *image, size_t len,
void *thing);
static herr_t H5FA__cache_dblk_page_free_icr(void *thing);
/*********************/
/* Package Variables */
/*********************/
/* H5FA header inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_FARRAY_HDR[1] = {{
H5AC_FARRAY_HDR_ID, /* Metadata client ID */
"Fixed-array Header", /* Metadata client name (for debugging) */
H5FD_MEM_FARRAY_HDR, /* File space memory type for client */
H5AC__CLASS_NO_FLAGS_SET, /* Client class behavior flags */
H5FA__cache_hdr_get_load_size, /* 'get_load_size' callback */
H5FA__cache_hdr_deserialize, /* 'deserialize' callback */
H5FA__cache_hdr_image_len, /* 'image_len' callback */
NULL, /* 'pre_serialize' callback */
H5FA__cache_hdr_serialize, /* 'serialize' callback */
NULL, /* 'notify' callback */
H5FA__cache_hdr_free_icr, /* 'free_icr' callback */
NULL, /* 'fsf_size' callback */
}};
/* H5FA data block inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_FARRAY_DBLOCK[1] = {{
H5AC_FARRAY_DBLOCK_ID, /* Metadata client ID */
"Fixed Array Data Block", /* Metadata client name (for debugging) */
H5FD_MEM_FARRAY_DBLOCK, /* File space memory type for client */
H5AC__CLASS_NO_FLAGS_SET, /* Client class behavior flags */
H5FA__cache_dblock_get_load_size, /* 'get_load_size' callback */
H5FA__cache_dblock_deserialize, /* 'deserialize' callback */
H5FA__cache_dblock_image_len, /* 'image_len' callback */
NULL, /* 'pre_serialize' callback */
H5FA__cache_dblock_serialize, /* 'serialize' callback */
NULL, /* 'notify' callback */
H5FA__cache_dblock_free_icr, /* 'free_icr' callback */
H5FA__cache_dblock_fsf_size, /* 'fsf_size' callback */
}};
/* H5FA data block page inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_FARRAY_DBLK_PAGE[1] = {{
H5AC_FARRAY_DBLK_PAGE_ID, /* Metadata client ID */
"Fixed Array Data Block Page", /* Metadata client name (for debugging) */
H5FD_MEM_FARRAY_DBLK_PAGE, /* File space memory type for client */
H5AC__CLASS_NO_FLAGS_SET, /* Client class behavior flags */
H5FA__cache_dblk_page_get_load_size, /* 'get_load_size' callback */
H5FA__cache_dblk_page_deserialize, /* 'deserialize' callback */
H5FA__cache_dblk_page_image_len, /* 'image_len' callback */
NULL, /* 'pre_serialize' callback */
H5FA__cache_dblk_page_serialize, /* 'serialize' callback */
NULL, /* 'notify' callback */
H5FA__cache_dblk_page_free_icr, /* 'free_icr' callback */
NULL, /* 'fsf_size' callback */
}};
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5FA__cache_hdr_get_load_size
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* July 31, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_hdr_get_load_size(const void *_udata, size_t *image_len))
/* Local variables */
const H5FA_hdr_cache_ud_t *udata = (const H5FA_hdr_cache_ud_t *)_udata; /* User data for callback */
/* Check arguments */
HDassert(udata);
HDassert(udata->f);
HDassert(image_len);
/* Set the image length size */
*image_len = (size_t)H5FA_HEADER_SIZE_FILE(udata->f);
END_FUNC(STATIC) /* end H5FA__cache_hdr_get_load_size() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_hdr_deserialize
*
* Purpose: Loads a data structure from the disk.
*
* Return: Success: Pointer to a new Fixed array
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 12, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
void *, NULL, NULL,
H5FA__cache_hdr_deserialize(const void *_image, size_t len,
void *_udata, hbool_t H5_ATTR_UNUSED *dirty))
/* Local variables */
H5FA_cls_id_t id; /* ID of fixed array class, as found in file */
H5FA_hdr_t *hdr = NULL; /* Fixed array info */
H5FA_hdr_cache_ud_t *udata = (H5FA_hdr_cache_ud_t *)_udata;
const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
/* Check arguments */
HDassert(udata);
HDassert(udata->f);
HDassert(H5F_addr_defined(udata->addr));
/* Allocate space for the fixed array data structure */
if(NULL == (hdr = H5FA__hdr_alloc(udata->f)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array shared header")
/* Set the fixed array header's address */
hdr->addr = udata->addr;
/* Magic number */
if(HDmemcmp(image, H5FA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC))
H5E_THROW(H5E_BADVALUE, "wrong fixed array header signature")
image += H5_SIZEOF_MAGIC;
/* Version */
if(*image++ != H5FA_HDR_VERSION)
H5E_THROW(H5E_VERSION, "wrong fixed array header version")
/* Fixed array class */
id = (H5FA_cls_id_t)*image++;
if(id >= H5FA_NUM_CLS_ID)
H5E_THROW(H5E_BADTYPE, "incorrect fixed array class")
hdr->cparam.cls = H5FA_client_class_g[id];
/* General array creation/configuration information */
hdr->cparam.raw_elmt_size = *image++; /* Element size in file (in bytes) */
hdr->cparam.max_dblk_page_nelmts_bits = *image++; /* Log2(Max. # of elements in data block page) -
i.e. # of bits needed to store max. # of
elements in data block page. */
/* Array statistics */
H5F_DECODE_LENGTH(udata->f, image, hdr->cparam.nelmts); /* Number of elements */
/* Internal information */
H5F_addr_decode(udata->f, &image, &hdr->dblk_addr); /* Address of index block */
/* Check for data block */
if(H5F_addr_defined(hdr->dblk_addr)) {
H5FA_dblock_t dblock; /* Fake data block for computing size */
size_t dblk_page_nelmts; /* # of elements per data block page */
/* Set up fake data block for computing size on disk */
dblock.hdr = hdr;
dblock.dblk_page_init_size = 0;
dblock.npages = 0;
dblk_page_nelmts = (size_t)1 << hdr->cparam.max_dblk_page_nelmts_bits;
if(hdr->cparam.nelmts > dblk_page_nelmts) {
dblock.npages = (size_t)(((hdr->cparam.nelmts + dblk_page_nelmts) - 1) / dblk_page_nelmts);
dblock.dblk_page_init_size = (dblock.npages + 7) / 8;
} /* end if */
/* Compute Fixed Array data block size for hdr statistics */
hdr->stats.dblk_size = (size_t)H5FA_DBLOCK_SIZE(&dblock);
} /* end if */
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(image - (const uint8_t *)_image) == (len - H5FA_SIZEOF_CHKSUM));
/* Compute checksum on entire header */
/* (including the filter information, if present) */
computed_chksum = H5_checksum_metadata(_image, (size_t)(image - (const uint8_t *)_image), 0);
/* Metadata checksum */
UINT32DECODE(image, stored_chksum);
/* Sanity check */
HDassert((size_t)(image - (const uint8_t *)_image) == len);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for fixed array header")
/* Finish initializing fixed array header */
if(H5FA__hdr_init(hdr, udata->ctx_udata) < 0)
H5E_THROW(H5E_CANTINIT, "initialization failed for fixed array header")
HDassert(hdr->size == len);
/* Set return value */
ret_value = hdr;
CATCH
/* Release resources */
if(!ret_value)
if(hdr && H5FA__hdr_dest(hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array header")
END_FUNC(STATIC) /* end H5FA__cache_hdr_deserialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_hdr_image_len
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 12, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_hdr_image_len(const void *_thing, size_t *image_len))
/* Local variables */
const H5FA_hdr_t *hdr = (const H5FA_hdr_t *)_thing; /* Pointer to the object */
/* Check arguments */
HDassert(hdr);
HDassert(image_len);
/* Set the image length size */
*image_len = hdr->size;
END_FUNC(STATIC) /* end H5FA__cache_hdr_image_len() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_hdr_serialize
*
* Purpose: Flushes a dirty object to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 12, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_hdr_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len,
void *_thing))
/* Local variables */
H5FA_hdr_t *hdr = (H5FA_hdr_t *)_thing; /* Pointer to the fixed array header */
uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* check arguments */
HDassert(f);
HDassert(image);
HDassert(hdr);
/* Magic number */
HDmemcpy(image, H5FA_HDR_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += H5_SIZEOF_MAGIC;
/* Version # */
*image++ = H5FA_HDR_VERSION;
/* Fixed array type */
*image++ = hdr->cparam.cls->id;
/* General array creation/configuration information */
*image++ = hdr->cparam.raw_elmt_size; /* Element size in file (in bytes) */
*image++ = hdr->cparam.max_dblk_page_nelmts_bits; /* Log2(Max. # of elements in data block page) - i.e. # of bits needed to store max. # of elements in data block page */
/* Array statistics */
H5F_ENCODE_LENGTH(f, image, hdr->stats.nelmts); /* Number of elements for the fixed array */
/* Internal information */
H5F_addr_encode(f, &image, hdr->dblk_addr); /* Address of fixed array data block */
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(_image, (size_t)(image - (uint8_t *)_image), 0);
/* Metadata checksum */
UINT32ENCODE(image, metadata_chksum);
/* Sanity check */
HDassert((size_t)(image - (uint8_t *)_image) == len);
END_FUNC(STATIC) /* end H5FA__cache_hdr_serialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_hdr_free_icr
*
* Purpose: Destroy/release an "in core representation" of a data
* structure
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 12, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5FA__cache_hdr_free_icr(void *thing))
/* Check arguments */
HDassert(thing);
/* Release the extensible array header */
if(H5FA__hdr_dest((H5FA_hdr_t *)thing) < 0)
H5E_THROW(H5E_CANTFREE, "can't free fixed array header")
CATCH
END_FUNC(STATIC) /* end H5FA__cache_hdr_free_icr() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_get_load_size
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 12, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_dblock_get_load_size(const void *_udata, size_t *image_len))
/* Local variables */
H5FA_dblock_cache_ud_t *udata = (H5FA_dblock_cache_ud_t *)_udata; /* User data */
H5FA_dblock_t dblock; /* Fake data block for computing size */
size_t dblk_page_nelmts; /* # of elements per data block page */
/* Check arguments */
HDassert(udata);
HDassert(udata->hdr);
HDassert(image_len);
/* Set up fake data block for computing size on disk */
/* (Note: extracted from H5FA__dblock_alloc) */
HDmemset(&dblock, 0, sizeof(dblock));
/* Set up fake data block for computing size on disk
*
* need: dblock->hdr
* dblock->npages
* dblock->dblk_page_init_size
*/
dblock.hdr = udata->hdr;
dblk_page_nelmts = (size_t)1 << udata->hdr->cparam.max_dblk_page_nelmts_bits;
if(udata->hdr->cparam.nelmts > dblk_page_nelmts) {
dblock.npages = (size_t)(((udata->hdr->cparam.nelmts + dblk_page_nelmts) - 1) / dblk_page_nelmts);
dblock.dblk_page_init_size = (dblock.npages + 7) / 8;
} /* end if */
/* Set the image length size */
if(!dblock.npages)
*image_len = (size_t)H5FA_DBLOCK_SIZE(&dblock);
else
*image_len = (size_t)H5FA_DBLOCK_PREFIX_SIZE(&dblock);
END_FUNC(STATIC) /* end H5FA__cache_dblock_get_load_size() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_deserialize
*
* Purpose: Loads a data structure from the disk.
*
* Return: Success: Pointer to a new B-tree.
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
void *, NULL, NULL,
H5FA__cache_dblock_deserialize(const void *_image, size_t len,
void *_udata, hbool_t H5_ATTR_UNUSED *dirty))
/* Local variables */
H5FA_dblock_t *dblock = NULL; /* Data block info */
H5FA_dblock_cache_ud_t *udata = (H5FA_dblock_cache_ud_t *)_udata; /* User data for loading data block */
const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
haddr_t arr_addr; /* Address of array header in the file */
/* Sanity check */
HDassert(udata);
HDassert(udata->hdr);
/* Allocate the fixed array data block */
if(NULL == (dblock = H5FA__dblock_alloc(udata->hdr)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array data block")
HDassert(((!dblock->npages) && (len == (size_t)H5FA_DBLOCK_SIZE(dblock)))
|| (len == (size_t)H5FA_DBLOCK_PREFIX_SIZE(dblock)));
/* Set the fixed array data block's information */
dblock->addr = udata->dblk_addr;
/* Magic number */
if(HDmemcmp(image, H5FA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC))
H5E_THROW(H5E_BADVALUE, "wrong fixed array data block signature")
image += H5_SIZEOF_MAGIC;
/* Version */
if(*image++ != H5FA_DBLOCK_VERSION)
H5E_THROW(H5E_VERSION, "wrong fixed array data block version")
/* Fixed array type */
if(*image++ != (uint8_t)udata->hdr->cparam.cls->id)
H5E_THROW(H5E_BADTYPE, "incorrect fixed array class")
/* Address of header for array that owns this block (just for file integrity checks) */
H5F_addr_decode(udata->hdr->f, &image, &arr_addr);
if(H5F_addr_ne(arr_addr, udata->hdr->addr))
H5E_THROW(H5E_BADVALUE, "wrong fixed array header address")
/* Page initialization flags */
if(dblock->npages > 0) {
HDmemcpy(dblock->dblk_page_init, image, dblock->dblk_page_init_size);
image += dblock->dblk_page_init_size;
} /* end if */
/* Only decode elements if the data block is not paged */
if(!dblock->npages) {
/* Decode elements in data block */
/* Convert from raw elements on disk into native elements in memory */
if((udata->hdr->cparam.cls->decode)(image, dblock->elmts, (size_t)udata->hdr->cparam.nelmts, udata->hdr->cb_ctx) < 0)
H5E_THROW(H5E_CANTDECODE, "can't decode fixed array data elements")
image += (udata->hdr->cparam.nelmts * udata->hdr->cparam.raw_elmt_size);
} /* end if */
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(image - (const uint8_t *)_image) == (len - H5FA_SIZEOF_CHKSUM));
/* Set the data block's size */
dblock->size = H5FA_DBLOCK_SIZE(dblock);
/* Compute checksum on data block */
computed_chksum = H5_checksum_metadata(_image, (size_t)(image - (const uint8_t *)_image), 0);
/* Metadata checksum */
UINT32DECODE(image, stored_chksum);
/* Sanity check */
HDassert((size_t)(image - (const uint8_t *)_image) == len);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for fixed array data block")
/* Set return value */
ret_value = dblock;
CATCH
/* Release resources */
if(!ret_value)
if(dblock && H5FA__dblock_dest(dblock) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array data block")
END_FUNC(STATIC) /* end H5FA__cache_dblock_deserialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_image_len
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_dblock_image_len(const void *_thing, size_t *image_len))
/* Local variables */
const H5FA_dblock_t *dblock = (const H5FA_dblock_t *)_thing; /* Pointer to the object */
/* Check arguments */
HDassert(dblock);
HDassert(image_len);
/* Set the image length size */
if(!dblock->npages)
*image_len = (size_t)dblock->size;
else
*image_len = H5FA_DBLOCK_PREFIX_SIZE(dblock);
END_FUNC(STATIC) /* end H5FA__cache_dblock_image_len() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_serialize
*
* Purpose: Flushes a dirty object to disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5FA__cache_dblock_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len,
void *_thing))
/* Local variables */
H5FA_dblock_t *dblock = (H5FA_dblock_t *)_thing; /* Pointer to the object to serialize */
uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* Check arguments */
HDassert(f);
HDassert(image);
HDassert(dblock);
HDassert(dblock->hdr);
/* Magic number */
HDmemcpy(image, H5FA_DBLOCK_MAGIC, (size_t)H5_SIZEOF_MAGIC);
image += H5_SIZEOF_MAGIC;
/* Version # */
*image++ = H5FA_DBLOCK_VERSION;
/* Fixed array type */
*image++ = dblock->hdr->cparam.cls->id;
/* Address of array header for array which owns this block */
H5F_addr_encode(f, &image, dblock->hdr->addr);
/* Page init flags */
if(dblock->npages > 0) {
/* Store the 'page init' bitmasks */
HDmemcpy(image, dblock->dblk_page_init, dblock->dblk_page_init_size);
image += dblock->dblk_page_init_size;
} /* end if */
/* Only encode elements if the data block is not paged */
if(!dblock->npages) {
/* Encode elements in data block */
/* Convert from native elements in memory into raw elements on disk */
H5_CHECK_OVERFLOW(dblock->hdr->cparam.nelmts, /* From: */hsize_t, /* To: */size_t);
if((dblock->hdr->cparam.cls->encode)(image, dblock->elmts, (size_t)dblock->hdr->cparam.nelmts, dblock->hdr->cb_ctx) < 0)
H5E_THROW(H5E_CANTENCODE, "can't encode fixed array data elements")
image += (dblock->hdr->cparam.nelmts * dblock->hdr->cparam.raw_elmt_size);
} /* end if */
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(_image, (size_t)(image - (uint8_t *)_image), 0);
/* Metadata checksum */
UINT32ENCODE(image, metadata_chksum);
/* Sanity check */
HDassert((size_t)(image - (uint8_t *)_image) == len);
CATCH
END_FUNC(STATIC) /* end H5FA__cache_dblock_serialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_free_icr
*
* Purpose: Destroy/release an "in core representation" of a data
* structure
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5FA__cache_dblock_free_icr(void *_thing))
H5FA_dblock_t *dblock = (H5FA_dblock_t *)_thing; /* Pointer to the object */
/* Check arguments */
HDassert(dblock);
/* Release the fixed array data block */
if(H5FA__dblock_dest(dblock) < 0)
H5E_THROW(H5E_CANTFREE, "can't free fixed array data block")
CATCH
END_FUNC(STATIC) /* end H5FA__cache_dblock_free_icr() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblock_fsf_size
*
* Purpose: Tell the metadata cache the actual amount of file space
* to free when a dblock entry is destroyed with the free
* file space block set.
*
* This function is needed when the data block is paged, as
* the datablock header and all its pages are allocted as a
* single contiguous chunk of file space, and must be
* deallocated the same way.
*
* The size of the chunk of memory in which the dblock
* header and all its pages is stored in the size field,
* so we simply pass that value back to the cache.
*
* If the datablock is not paged, then the size field of
* the cache_info contains the correct size. However this
* value will be the same as the size field, so we return
* the contents of the size field to the cache in this case
* as well.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer
* 12/5/14
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_dblock_fsf_size(const void *_thing, size_t *fsf_size))
const H5FA_dblock_t *dblock = (const H5FA_dblock_t *)_thing; /* Pointer to the object */
/* Check arguments */
HDassert(dblock);
HDassert(dblock->cache_info.magic == H5C__H5C_CACHE_ENTRY_T_MAGIC);
HDassert(dblock->cache_info.type == H5AC_FARRAY_DBLOCK);
HDassert(fsf_size);
*fsf_size = dblock->size;
END_FUNC(STATIC) /* end H5FA__cache_dblock_fsf_size() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblk_page_get_load_size
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_dblk_page_get_load_size(const void *_udata, size_t *image_len))
/* Local variables */
const H5FA_dblk_page_cache_ud_t *udata = (const H5FA_dblk_page_cache_ud_t *)_udata; /* User data */
/* Check arguments */
HDassert(udata);
HDassert(udata->hdr);
HDassert(udata->nelmts > 0);
HDassert(image_len);
*image_len = (size_t)H5FA_DBLK_PAGE_SIZE(udata->hdr, udata->nelmts);
END_FUNC(STATIC) /* end H5FA__cache_dblk_page_get_load_size() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblk_page_deserialize
*
* Purpose: Loads a data structure from the disk.
*
* Return: Success: Pointer to a new B-tree.
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
void *, NULL, NULL,
H5FA__cache_dblk_page_deserialize(const void *_image, size_t len,
void *_udata, hbool_t H5_ATTR_UNUSED *dirty))
/* Local variables */
H5FA_dblk_page_t *dblk_page = NULL; /* Data block page info */
H5FA_dblk_page_cache_ud_t *udata = (H5FA_dblk_page_cache_ud_t *)_udata; /* User data for loading data block page */
const uint8_t *image = (const uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t stored_chksum; /* Stored metadata checksum value */
uint32_t computed_chksum; /* Computed metadata checksum value */
/* Sanity check */
HDassert(udata);
HDassert(udata->hdr);
HDassert(udata->nelmts > 0);
HDassert(H5F_addr_defined(udata->dblk_page_addr));
/* Allocate the fixed array data block page */
if(NULL == (dblk_page = H5FA__dblk_page_alloc(udata->hdr, udata->nelmts)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for fixed array data block page")
/* Set the fixed array data block's information */
dblk_page->addr = udata->dblk_page_addr;
/* Internal information */
/* Decode elements in data block page */
/* Convert from raw elements on disk into native elements in memory */
if((udata->hdr->cparam.cls->decode)(image, dblk_page->elmts, udata->nelmts, udata->hdr->cb_ctx) < 0)
H5E_THROW(H5E_CANTDECODE, "can't decode fixed array data elements")
image += (udata->nelmts * udata->hdr->cparam.raw_elmt_size);
/* Sanity check */
/* (allow for checksum not decoded yet) */
HDassert((size_t)(image - (const uint8_t *)_image) == (len - H5FA_SIZEOF_CHKSUM));
/* Set the data block page's size */
dblk_page->size = len;
/* Compute checksum on data block */
computed_chksum = H5_checksum_metadata(_image, (size_t)(image - (const uint8_t *)_image), 0);
/* Metadata checksum */
UINT32DECODE(image, stored_chksum);
/* Sanity check */
HDassert((size_t)(image - (const uint8_t *)_image) == dblk_page->size);
/* Verify checksum */
if(stored_chksum != computed_chksum)
H5E_THROW(H5E_BADVALUE, "incorrect metadata checksum for fixed array data block page")
/* Set return value */
ret_value = dblk_page;
CATCH
/* Release resources */
if(!ret_value)
if(dblk_page && H5FA__dblk_page_dest(dblk_page) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array data block page")
END_FUNC(STATIC) /* end H5FA__cache_dblk_page_deserialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblk_page_image_len
*
* Purpose: Compute the size of the data structure on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, NOERR,
herr_t, SUCCEED, -,
H5FA__cache_dblk_page_image_len(const void *_thing, size_t *image_len))
/* Local variables */
const H5FA_dblk_page_t *dblk_page = (const H5FA_dblk_page_t *)_thing; /* Pointer to the object */
/* Check arguments */
HDassert(dblk_page);
HDassert(image_len);
/* Set the image length size */
*image_len = dblk_page->size;
END_FUNC(STATIC) /* end H5FA__cache_dblk_page_image_len() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblk_page_serialize
*
* Purpose: Flushes a dirty object to disk.
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5FA__cache_dblk_page_serialize(const H5F_t *f, void *_image, size_t H5_ATTR_UNUSED len,
void *_thing))
/* Local variables */
H5FA_dblk_page_t *dblk_page = (H5FA_dblk_page_t *)_thing; /* Pointer to the object to serialize */
uint8_t *image = (uint8_t *)_image; /* Pointer into raw data buffer */
uint32_t metadata_chksum; /* Computed metadata checksum value */
/* Sanity check */
HDassert(f);
HDassert(image);
HDassert(dblk_page);
HDassert(dblk_page->hdr);
/* Internal information */
/* Encode elements in data block page */
/* Convert from native elements in memory into raw elements on disk */
if((dblk_page->hdr->cparam.cls->encode)(image, dblk_page->elmts, dblk_page->nelmts, dblk_page->hdr->cb_ctx) < 0)
H5E_THROW(H5E_CANTENCODE, "can't encode fixed array data elements")
image += (dblk_page->nelmts * dblk_page->hdr->cparam.raw_elmt_size);
/* Compute metadata checksum */
metadata_chksum = H5_checksum_metadata(_image, (size_t)(image - (uint8_t *)_image), 0);
/* Metadata checksum */
UINT32ENCODE(image, metadata_chksum);
/* Sanity check */
HDassert((size_t)(image - (uint8_t *)_image) == len);
CATCH
END_FUNC(STATIC) /* end H5FA__cache_dblk_page_serialize() */
/*-------------------------------------------------------------------------
* Function: H5FA__cache_dblk_page_free_icr
*
* Purpose: Destroy/release an "in core representation" of a data
* structure
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* August 14, 2013
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(STATIC, ERR,
herr_t, SUCCEED, FAIL,
H5FA__cache_dblk_page_free_icr(void *thing))
/* Check arguments */
HDassert(thing);
/* Release the fixed array data block page */
if(H5FA__dblk_page_dest((H5FA_dblk_page_t *)thing) < 0)
H5E_THROW(H5E_CANTFREE, "can't free fixed array data block page")
CATCH
END_FUNC(STATIC) /* end H5FA__cache_dblk_page_free_icr() */
|