1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5FAhdr.c
*
* Purpose: Array header routines for Fixed Array.
*
*-------------------------------------------------------------------------
*/
/**********************/
/* Module Declaration */
/**********************/
#define H5FA_MODULE
/***********************/
/* Other Packages Used */
/***********************/
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FApkg.h" /* Fixed Arrays */
#include "H5MFprivate.h" /* File memory management */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Declare a free list to manage the H5FA_hdr_t struct */
H5FL_DEFINE_STATIC(H5FA_hdr_t);
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_alloc
*
* Purpose: Allocate shared Fixed Array header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
H5FA_hdr_t *, NULL, NULL,
H5FA__hdr_alloc(H5F_t *f, const H5FA_class_t *cls, void *udata))
/* Local variables */
H5FA_hdr_t *hdr = NULL; /* Shared Fixed Array header */
/* Check arguments */
HDassert(f);
HDassert(cls);
/* Allocate space for the shared information */
if(NULL == (hdr = H5FL_CALLOC(H5FA_hdr_t)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for Fixed Array shared header")
/* Set non-zero internal fields */
hdr->addr = HADDR_UNDEF;
/* Set the internal parameters for the array */
hdr->f = f;
hdr->sizeof_addr = H5F_SIZEOF_ADDR(f);
hdr->sizeof_size = H5F_SIZEOF_SIZE(f);
/* Set the class of the array */
hdr->cparam.cls = cls;
/* Create the callback context */
if(NULL == (hdr->cb_ctx = (*cls->crt_context)(udata)))
H5E_THROW(H5E_CANTCREATE, "unable to create fixed array client callback context")
/* Set the return value */
ret_value = hdr;
CATCH
if(!ret_value)
if(hdr && H5FA__hdr_dest(hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy fixed array header")
END_FUNC(PKG) /* end H5FA__hdr_alloc() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_create
*
* Purpose: Creates a new Fixed Array header in the file
*
* Return: SUCCEED/FAIL
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
haddr_t, HADDR_UNDEF, HADDR_UNDEF,
H5FA__hdr_create(H5F_t *f, hid_t dxpl_id, const H5FA_create_t *cparam,
void *ctx_udata))
/* Local variables */
H5FA_hdr_t *hdr = NULL; /* Fixed array header */
#ifdef H5FA_DEBUG
HDfprintf(stderr, "%s: Called\n", FUNC);
#endif /* H5FA_DEBUG */
/* Check arguments */
HDassert(f);
HDassert(cparam);
#ifndef NDEBUG
{
/* Check for valid parameters */
if(cparam->raw_elmt_size == 0)
H5E_THROW(H5E_BADVALUE, "element size must be greater than zero")
if(cparam->max_dblk_page_nelmts_bits == 0)
H5E_THROW(H5E_BADVALUE, "max. # of elements bits must be greater than zero")
if(cparam->nelmts == 0)
H5E_THROW(H5E_BADVALUE, "# of elements must be greater than zero")
}
#endif /* NDEBUG */
/* Allocate space for the shared information */
if(NULL == (hdr = H5FA__hdr_alloc(f, cparam->cls, ctx_udata)))
H5E_THROW(H5E_CANTALLOC, "memory allocation failed for Fixed Array shared header")
hdr->dblk_addr = HADDR_UNDEF;
/* Set the creation parameters for the array */
HDmemcpy(&hdr->cparam, cparam, sizeof(hdr->cparam));
/* Set size of header on disk (locally and in statistics) */
hdr->stats.hdr_size = hdr->size = H5FA_HEADER_SIZE(hdr);
/* Set number of elements for Fixed Array in statistics */
hdr->stats.nelmts = hdr->cparam.nelmts;
/* Allocate space for the header on disk */
if(HADDR_UNDEF == (hdr->addr = H5MF_alloc(f, H5FD_MEM_FARRAY_HDR, dxpl_id, (hsize_t)hdr->size)))
H5E_THROW(H5E_CANTALLOC, "file allocation failed for Fixed Array header")
/* Cache the new Fixed Array header */
if(H5AC_set(f, dxpl_id, H5AC_FARRAY_HDR, hdr->addr, hdr, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTINSERT, "can't add fixed array header to cache")
/* Set address of array header to return */
ret_value = hdr->addr;
CATCH
if(!H5F_addr_defined(ret_value))
if(hdr) {
/* Release header's disk space */
if(H5F_addr_defined(hdr->addr) && H5MF_xfree(f, H5FD_MEM_FARRAY_HDR, dxpl_id, hdr->addr, (hsize_t)hdr->size) < 0)
H5E_THROW(H5E_CANTFREE, "unable to free Fixed Array header")
/* Destroy header */
if(H5FA__hdr_dest(hdr) < 0)
H5E_THROW(H5E_CANTFREE, "unable to destroy Fixed Array header")
} /* end if */
END_FUNC(PKG) /* end H5FA__hdr_create() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_incr
*
* Purpose: Increment component reference count on shared array header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
herr_t, SUCCEED, FAIL,
H5FA__hdr_incr(H5FA_hdr_t *hdr))
/* Sanity check */
HDassert(hdr);
/* Mark header as un-evictable when something is depending on it */
if(hdr->rc == 0)
if(H5AC_pin_protected_entry(hdr->f, hdr) < 0)
H5E_THROW(H5E_CANTPIN, "unable to pin fixed array header")
/* Increment reference count on shared header */
hdr->rc++;
CATCH
END_FUNC(PKG) /* end H5FA__hdr_incr() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_decr
*
* Purpose: Decrement component reference count on shared array header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
herr_t, SUCCEED, FAIL,
H5FA__hdr_decr(H5FA_hdr_t *hdr))
/* Sanity check */
HDassert(hdr);
HDassert(hdr->rc);
/* Decrement reference count on shared header */
hdr->rc--;
/* Mark header as evictable again when nothing depend on it */
if(hdr->rc == 0) {
HDassert(hdr->file_rc == 0);
if(H5AC_unpin_entry(hdr->f, hdr) < 0)
H5E_THROW(H5E_CANTUNPIN, "unable to unpin fixed array header")
} /* end if */
CATCH
END_FUNC(PKG) /* end H5FA__hdr_decr() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_fuse_incr
*
* Purpose: Increment file reference count on shared array header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, NOERR,
herr_t, SUCCEED, -,
H5FA__hdr_fuse_incr(H5FA_hdr_t *hdr))
/* Sanity check */
HDassert(hdr);
/* Increment file reference count on shared header */
hdr->file_rc++;
END_FUNC(PKG) /* end H5FA__hdr_fuse_incr() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_fuse_decr
*
* Purpose: Decrement file reference count on shared array header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, NOERR,
size_t, 0, -,
H5FA__hdr_fuse_decr(H5FA_hdr_t *hdr))
/* Sanity check */
HDassert(hdr);
HDassert(hdr->file_rc);
/* Decrement file reference count on shared header */
hdr->file_rc--;
/* Set return value */
ret_value = hdr->file_rc;
END_FUNC(PKG) /* end H5FA__hdr_fuse_decr() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_modified
*
* Purpose: Mark a fixed array as modified
*
* Return: SUCCEED/FAIL
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
herr_t, SUCCEED, FAIL,
H5FA__hdr_modified(H5FA_hdr_t *hdr))
/* Sanity check */
HDassert(hdr);
HDassert(hdr->f);
/* Mark header as dirty in cache */
if(H5AC_mark_pinned_or_protected_entry_dirty(hdr->f, hdr) < 0)
H5E_THROW(H5E_CANTMARKDIRTY, "unable to mark fixed array header as dirty")
CATCH
END_FUNC(PKG) /* end H5FA__hdr_modified() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_delete
*
* Purpose: Delete a fixed array, starting with the header
*
* Return: SUCCEED/FAIL
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
herr_t, SUCCEED, FAIL,
H5FA__hdr_delete(H5FA_hdr_t *hdr, hid_t dxpl_id))
/* Sanity check */
HDassert(hdr);
HDassert(!hdr->file_rc);
#ifndef NDEBUG
{
unsigned hdr_status = 0; /* Array header's status in the metadata cache */
/* Check the array header's status in the metadata cache */
if(H5AC_get_entry_status(hdr->f, hdr->addr, &hdr_status) < 0)
H5E_THROW(H5E_CANTGET, "unable to check metadata cache status for array header")
/* Sanity checks on array header */
HDassert(hdr_status & H5AC_ES__IN_CACHE);
HDassert(hdr_status & H5AC_ES__IS_PROTECTED);
} /* end block */
#endif /* NDEBUG */
/* Check for Fixed Array Data block */
if(H5F_addr_defined(hdr->dblk_addr)) {
#ifdef H5FA_DEBUG
HDfprintf(stderr, "%s: hdr->dblk_addr = %a\n", FUNC, hdr->dblk_addr);
#endif /* H5FA_DEBUG */
/* Delete Fixed Array Data block */
if(H5FA__dblock_delete(hdr, dxpl_id, hdr->dblk_addr, hdr->cparam.nelmts) < 0)
H5E_THROW(H5E_CANTDELETE, "unable to delete fixed array data block")
} /* end if */
/* Finished deleting header */
if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_FARRAY_HDR, hdr->addr, hdr, H5AC__DIRTIED_FLAG | H5AC__DELETED_FLAG | H5AC__FREE_FILE_SPACE_FLAG) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array header")
hdr = NULL;
CATCH
/* Unprotect the header, if an error occurred */
if(hdr && H5AC_unprotect(hdr->f, dxpl_id, H5AC_FARRAY_HDR, hdr->addr, hdr, H5AC__NO_FLAGS_SET) < 0)
H5E_THROW(H5E_CANTUNPROTECT, "unable to release fixed array header")
END_FUNC(PKG) /* end H5FA__hdr_delete() */
/*-------------------------------------------------------------------------
* Function: H5FA__hdr_dest
*
* Purpose: Destroys a fixed array header in memory.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi
* Thursday, April 30, 2009
*
*-------------------------------------------------------------------------
*/
BEGIN_FUNC(PKG, ERR,
herr_t, SUCCEED, FAIL,
H5FA__hdr_dest(H5FA_hdr_t *hdr))
/* Check arguments */
HDassert(hdr);
HDassert(hdr->rc == 0);
/* Destroy the callback context */
if((*hdr->cparam.cls->dst_context)(hdr->cb_ctx) < 0)
H5E_THROW(H5E_CANTRELEASE, "unable to destroy fixed array client callback context")
hdr->cb_ctx = NULL;
/* Free the shared info itself */
hdr = H5FL_FREE(H5FA_hdr_t, hdr);
CATCH
END_FUNC(PKG) /* end H5FA__hdr_dest() */
|