1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Robb Matzke <matzke@llnl.gov>
* Wednesday, October 22, 1997
*
* Purpose: This is the Posix stdio.h I/O subclass of H5Flow.
* It also serves as an example of coding a simple file driver,
* therefore, it should not use any non-public definitions.
*
* Notes: Ported to the new H5FD architecture on 10/18/99 - QAK
*
*/
#include <assert.h>
#include <stdlib.h>
#include <sys/stat.h>
#include "hdf5.h"
#ifdef H5_HAVE_STDIO_H
#include <stdio.h>
#endif
#ifdef H5_HAVE_UNISTD_H
#include <unistd.h>
#endif
#ifdef WIN32
#include <windows.h>
#include <io.h>
#endif
#ifdef MAX
#undef MAX
#endif /* MAX */
#define MAX(X,Y) ((X)>(Y)?(X):(Y))
#ifndef F_OK
#define F_OK 00
#define W_OK 02
#define R_OK 04
#endif
/* The driver identification number, initialized at runtime */
static hid_t H5FD_STDIO_g = 0;
/* File operations */
typedef enum {
H5FD_STDIO_OP_UNKNOWN=0,
H5FD_STDIO_OP_READ=1,
H5FD_STDIO_OP_WRITE=2,
H5FD_STDIO_OP_SEEK=3
} H5FD_stdio_file_op;
/*
* The description of a file belonging to this driver. The `eoa' and `eof'
* determine the amount of hdf5 address space in use and the high-water mark
* of the file (the current size of the underlying Unix file). The `pos'
* value is used to eliminate file position updates when they would be a
* no-op. Unfortunately we've found systems that use separate file position
* indicators for reading and writing so the lseek can only be eliminated if
* the current operation is the same as the previous operation. When opening
* a file the `eof' will be set to the current file size, `eoa' will be set
* to zero, `pos' will be set to H5F_ADDR_UNDEF (as it is when an error
* occurs), and `op' will be set to H5F_OP_UNKNOWN.
*/
typedef struct H5FD_stdio_t {
H5FD_t pub; /*public stuff, must be first */
FILE * fp; /*the file handle */
haddr_t eoa; /*end of allocated region */
haddr_t eof; /*end of file; current file size*/
haddr_t pos; /*current file I/O position */
H5FD_stdio_file_op op; /*last operation */
unsigned write_access; /* Flag to indicate the file was opened with write access */
#ifndef WIN32
/*
* On most systems the combination of device and i-node number uniquely
* identify a file.
*/
dev_t device; /*file device number */
ino_t inode; /*file i-node number */
#else
/*
* On WIN32 the low-order word of a unique identifier associated with the
* file and the volume serial number uniquely identify a file. This number
* (which, both? -rpm) may change when the system is restarted or when the
* file is opened. After a process opens a file, the identifier is
* constant until the file is closed. An application can use this
* identifier and the volume serial number to determine whether two
* handles refer to the same file.
*/
int fileindexlo;
int fileindexhi;
#endif
} H5FD_stdio_t;
/*
* These macros check for overflow of various quantities. These macros
* assume that file_offset_t is signed and haddr_t and size_t are unsigned.
*
* ADDR_OVERFLOW: Checks whether a file address of type `haddr_t'
* is too large to be represented by the second argument
* of the file seek function.
*
* SIZE_OVERFLOW: Checks whether a buffer size of type `hsize_t' is too
* large to be represented by the `size_t' type.
*
* REGION_OVERFLOW: Checks whether an address and size pair describe data
* which can be addressed entirely by the second
* argument of the file seek function.
*/
/* adding for windows NT filesystem support. */
#ifdef WIN32
#define MAXADDR (((haddr_t)1<<(8*sizeof(LONGLONG)-1))-1)
#else
#define MAXADDR (((haddr_t)1<<(8*sizeof(long)-1))-1)
#endif
#define ADDR_OVERFLOW(A) (HADDR_UNDEF==(A) || ((A) & ~(haddr_t)MAXADDR))
#define SIZE_OVERFLOW(Z) ((Z) & ~(hsize_t)MAXADDR)
#ifdef WIN32
#define REGION_OVERFLOW(A,Z) (ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || \
sizeof(LONGLONG)<sizeof(size_t) || HADDR_UNDEF==(A)+(Z) || (LONGLONG)((A)+(Z))<(LONGLONG)(A))
#else
#define REGION_OVERFLOW(A,Z) (ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || \
sizeof(long)<sizeof(size_t) || HADDR_UNDEF==(A)+(Z) || (long)((A)+(Z))<(long)(A))
#endif
#ifdef H5_HAVE_LSEEK64
# define file_offset_t off64_t
# define file_truncate ftruncate64
#elif defined (WIN32) && !defined(__MWERKS__)
# /*MSVC*/
# define file_offset_t __int64
# define file_truncate _ftruncatei64
#else
# define file_offset_t off_t
# define file_truncate ftruncate
#endif
/* Prototypes */
static H5FD_t *H5FD_stdio_open(const char *name, unsigned flags,
hid_t fapl_id, haddr_t maxaddr);
static herr_t H5FD_stdio_close(H5FD_t *lf);
static int H5FD_stdio_cmp(const H5FD_t *_f1, const H5FD_t *_f2);
static herr_t H5FD_stdio_query(const H5FD_t *_f1, unsigned long *flags);
static haddr_t H5FD_stdio_get_eoa(H5FD_t *_file);
static herr_t H5FD_stdio_set_eoa(H5FD_t *_file, haddr_t addr);
static haddr_t H5FD_stdio_get_eof(H5FD_t *_file);
static herr_t H5FD_stdio_get_handle(H5FD_t *_file, hid_t fapl, void** file_handle);
static herr_t H5FD_stdio_read(H5FD_t *lf, H5FD_mem_t type, hid_t fapl_id, haddr_t addr,
size_t size, void *buf);
static herr_t H5FD_stdio_write(H5FD_t *lf, H5FD_mem_t type, hid_t fapl_id, haddr_t addr,
size_t size, const void *buf);
static herr_t H5FD_stdio_flush(H5FD_t *_file, hid_t dxpl_id, unsigned closing);
static const H5FD_class_t H5FD_stdio_g = {
"stdio", /*name */
MAXADDR, /*maxaddr */
H5F_CLOSE_WEAK, /* fc_degree */
NULL, /*sb_size */
NULL, /*sb_encode */
NULL, /*sb_decode */
0, /*fapl_size */
NULL, /*fapl_get */
NULL, /*fapl_copy */
NULL, /*fapl_free */
0, /*dxpl_size */
NULL, /*dxpl_copy */
NULL, /*dxpl_free */
H5FD_stdio_open, /*open */
H5FD_stdio_close, /*close */
H5FD_stdio_cmp, /*cmp */
H5FD_stdio_query, /*query */
NULL, /*alloc */
NULL, /*free */
H5FD_stdio_get_eoa, /*get_eoa */
H5FD_stdio_set_eoa, /*set_eoa */
H5FD_stdio_get_eof, /*get_eof */
H5FD_stdio_get_handle, /*get_handle */
H5FD_stdio_read, /*read */
H5FD_stdio_write, /*write */
H5FD_stdio_flush, /*flush */
NULL, /*lock */
NULL, /*unlock */
H5FD_FLMAP_SINGLE /*fl_map */
};
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_init
*
* Purpose: Initialize this driver by registering the driver with the
* library.
*
* Return: Success: The driver ID for the stdio driver.
*
* Failure: Negative.
*
* Programmer: Robb Matzke
* Thursday, July 29, 1999
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
hid_t
H5FD_stdio_init(void)
{
/* Clear the error stack */
H5Eclear();
if (H5I_VFL!=H5Iget_type(H5FD_STDIO_g))
H5FD_STDIO_g = H5FDregister(&H5FD_stdio_g);
return(H5FD_STDIO_g);
}
/*-------------------------------------------------------------------------
* Function: H5Pset_fapl_stdio
*
* Purpose: Modify the file access property list to use the H5FD_STDIO
* driver defined in this source file. There are no driver
* specific properties.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Thursday, February 19, 1998
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
herr_t
H5Pset_fapl_stdio(hid_t fapl_id)
{
static const char *func="H5FDset_fapl_stdio"; /*for error reporting*/
/*NO TRACE*/
/* Clear the error stack */
H5Eclear();
if(0 == H5Pisa_class(fapl_id, H5P_FILE_ACCESS))
H5Epush_ret(func, H5E_PLIST, H5E_BADTYPE, "not a file access property list", -1);
return H5Pset_driver(fapl_id, H5FD_STDIO, NULL);
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_open
*
* Purpose: Create and/or opens a Standard C file as an HDF5 file.
*
* Bugs: H5F_ACC_EXCL has a race condition. (? -QAK)
*
* Errors:
* IO CANTOPENFILE File doesn't exist and CREAT wasn't
* specified.
* IO CANTOPENFILE Fopen failed.
* IO FILEEXISTS File exists but CREAT and EXCL were
* specified.
*
* Return: Success: A pointer to a new file data structure. The
* public fields will be initialized by the
* caller, which is always H5FD_open().
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Wednesday, October 22, 1997
*
* Modifications:
* Ported to VFL/H5FD layer - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static H5FD_t *
H5FD_stdio_open( const char *name, unsigned flags, hid_t fapl_id,
haddr_t maxaddr)
{
FILE *f = NULL;
unsigned write_access=0; /* File opened with write access? */
H5FD_stdio_t *file=NULL;
static const char *func="H5FD_stdio_open"; /* Function Name for error reporting */
#ifdef WIN32
HFILE filehandle;
struct _BY_HANDLE_FILE_INFORMATION fileinfo;
int fd;
int results;
#else /* WIN32 */
struct stat sb;
#endif /* WIN32 */
/* Shut compiler up */
fapl_id=fapl_id;
/* Clear the error stack */
H5Eclear();
/* Check arguments */
if (!name || !*name)
H5Epush_ret(func, H5E_ARGS, H5E_BADVALUE, "invalid file name", NULL);
if (0==maxaddr || HADDR_UNDEF==maxaddr)
H5Epush_ret(func, H5E_ARGS, H5E_BADRANGE, "bogus maxaddr", NULL);
if (ADDR_OVERFLOW(maxaddr))
H5Epush_ret(func, H5E_ARGS, H5E_OVERFLOW, "maxaddr too large", NULL);
if (access(name, F_OK) < 0) {
if ((flags & H5F_ACC_CREAT) && (flags & H5F_ACC_RDWR)) {
f = fopen(name, "wb+");
write_access=1; /* Note the write access */
} else {
H5Epush_ret(func, H5E_IO, H5E_CANTOPENFILE, "file doesn't exist and CREAT wasn't specified", NULL);
}
} else if ((flags & H5F_ACC_CREAT) && (flags & H5F_ACC_EXCL)) {
H5Epush_ret(func, H5E_IO, H5E_FILEEXISTS, "file exists but CREAT and EXCL were specified", NULL);
} else if (flags & H5F_ACC_RDWR) {
if (flags & H5F_ACC_TRUNC)
f = fopen(name, "wb+");
else
f = fopen(name, "rb+");
write_access=1; /* Note the write access */
} else {
f = fopen(name, "rb");
}
if (!f)
H5Epush_ret(func, H5E_IO, H5E_CANTOPENFILE, "fopen failed", NULL);
/* Build the return value */
if (NULL==(file = calloc(1,sizeof(H5FD_stdio_t))))
H5Epush_ret(func, H5E_RESOURCE, H5E_NOSPACE, "memory allocation failed", NULL);
file->fp = f;
file->op = H5FD_STDIO_OP_SEEK;
file->pos = HADDR_UNDEF;
file->write_access=write_access; /* Note the write_access for later */
if (fseek(file->fp, 0, SEEK_END) < 0) {
file->op = H5FD_STDIO_OP_UNKNOWN;
} else {
long x = ftell (file->fp);
assert (x>=0);
file->eof = x;
}
/* The unique key */
#ifdef WIN32
/*#error "Needs correct fileindexhi & fileindexlo, code below is from sec2 driver"*/
fd = _fileno(f);
filehandle = _get_osfhandle(fd);
results = GetFileInformationByHandle((HANDLE)filehandle, &fileinfo);
file->fileindexhi = fileinfo.nFileIndexHigh;
file->fileindexlo = fileinfo.nFileIndexLow;
#else
fstat(fileno(file->fp), &sb);
file->device = sb.st_dev;
file->inode = sb.st_ino;
#endif
return((H5FD_t*)file);
} /* end H5FD_stdio_open() */
/*-------------------------------------------------------------------------
* Function: H5F_stdio_close
*
* Purpose: Closes a file.
*
* Errors:
* IO CLOSEERROR Fclose failed.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, October 22, 1997
*
* Modifications:
* Ported to VFL/H5FD layer - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_close(H5FD_t *_file)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
static const char *func="H5FD_stdio_close"; /* Function Name for error reporting */
/* Clear the error stack */
H5Eclear();
if (fclose(file->fp) < 0)
H5Epush_ret(func, H5E_IO, H5E_CLOSEERROR, "fclose failed", -1);
free(file);
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_cmp
*
* Purpose: Compares two files belonging to this driver using an
* arbitrary (but consistent) ordering.
*
* Return: Success: A value like strcmp()
*
* Failure: never fails (arguments were checked by the
* caller).
*
* Programmer: Robb Matzke
* Thursday, July 29, 1999
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static int
H5FD_stdio_cmp(const H5FD_t *_f1, const H5FD_t *_f2)
{
const H5FD_stdio_t *f1 = (const H5FD_stdio_t*)_f1;
const H5FD_stdio_t *f2 = (const H5FD_stdio_t*)_f2;
/* Clear the error stack */
H5Eclear();
#ifdef WIN32
if (f1->fileindexhi < f2->fileindexhi) return -1;
if (f1->fileindexhi > f2->fileindexhi) return 1;
if (f1->fileindexlo < f2->fileindexlo) return -1;
if (f1->fileindexlo > f2->fileindexlo) return 1;
#else
#ifdef H5_DEV_T_IS_SCALAR
if (f1->device < f2->device) return -1;
if (f1->device > f2->device) return 1;
#else /* H5_DEV_T_IS_SCALAR */
/* If dev_t isn't a scalar value on this system, just use memcmp to
* determine if the values are the same or not. The actual return value
* shouldn't really matter...
*/
if(memcmp(&(f1->device),&(f2->device),sizeof(dev_t))<0) return -1;
if(memcmp(&(f1->device),&(f2->device),sizeof(dev_t))>0) return 1;
#endif /* H5_DEV_T_IS_SCALAR */
if (f1->inode < f2->inode) return -1;
if (f1->inode > f2->inode) return 1;
#endif
return 0;
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_query
*
* Purpose: Set the flags that this VFL driver is capable of supporting.
* (listed in H5FDpublic.h)
*
* Return: Success: non-negative
*
* Failure: negative
*
* Programmer: Quincey Koziol
* Friday, August 25, 2000
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_query(const H5FD_t *_f, unsigned long *flags /* out */)
{
/* Shut compiler up */
_f=_f;
/* Set the VFL feature flags that this driver supports */
if(flags) {
*flags = 0;
*flags|=H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */
*flags|=H5FD_FEAT_ACCUMULATE_METADATA; /* OK to accumulate metadata for faster writes */
*flags|=H5FD_FEAT_DATA_SIEVE; /* OK to perform data sieving for faster raw data reads & writes */
*flags|=H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */
}
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_get_eoa
*
* Purpose: Gets the end-of-address marker for the file. The EOA marker
* is the first address past the last byte allocated in the
* format address space.
*
* Return: Success: The end-of-address marker.
*
* Failure: HADDR_UNDEF
*
* Programmer: Robb Matzke
* Monday, August 2, 1999
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static haddr_t
H5FD_stdio_get_eoa(H5FD_t *_file)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
/* Clear the error stack */
H5Eclear();
return(file->eoa);
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_set_eoa
*
* Purpose: Set the end-of-address marker for the file. This function is
* called shortly after an existing HDF5 file is opened in order
* to tell the driver where the end of the HDF5 data is located.
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Robb Matzke
* Thursday, July 29, 1999
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_set_eoa(H5FD_t *_file, haddr_t addr)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
/* Clear the error stack */
H5Eclear();
file->eoa = addr;
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_get_eof
*
* Purpose: Returns the end-of-file marker, which is the greater of
* either the Unix end-of-file or the HDF5 end-of-address
* markers.
*
* Return: Success: End of file address, the first address past
* the end of the "file", either the Unix file
* or the HDF5 file.
*
* Failure: HADDR_UNDEF
*
* Programmer: Robb Matzke
* Thursday, July 29, 1999
*
* Modifications:
* Stolen from the sec2 driver - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static haddr_t
H5FD_stdio_get_eof(H5FD_t *_file)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
/* Clear the error stack */
H5Eclear();
return(MAX(file->eof, file->eoa));
}
/*-------------------------------------------------------------------------
* Function: H5FD_stdio_get_handle
*
* Purpose: Returns the file handle of stdio file driver.
*
* Returns: Non-negative if succeed or negative if fails.
*
* Programmer: Raymond Lu
* Sept. 16, 2002
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_get_handle(H5FD_t *_file, hid_t fapl, void** file_handle)
{
H5FD_stdio_t *file = (H5FD_stdio_t *)_file;
static const char *func="H5FD_stdio_get_handle"; /* Function Name for error reporting */
/* Shut compiler up */
fapl=fapl;
/* Clear the error stack */
H5Eclear();
*file_handle = &(file->fp);
if(*file_handle==NULL)
H5Epush_ret(func, H5E_IO, H5E_WRITEERROR, "get handle failed", -1);
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5F_stdio_read
*
* Purpose: Reads SIZE bytes beginning at address ADDR in file LF and
* places them in buffer BUF. Reading past the logical or
* physical end of file returns zeros instead of failing.
*
* Errors:
* IO READERROR Fread failed.
* IO SEEKERROR Fseek failed.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, October 22, 1997
*
* Modifications:
* June 2, 1998 Albert Cheng
* Added xfer_mode argument
*
* Ported to VFL/H5FD layer - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size,
void *buf/*out*/)
{
size_t n;
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
static const char *func="H5FD_stdio_read"; /* Function Name for error reporting */
/* Shut compiler up */
type=type;
dxpl_id=dxpl_id;
/* Clear the error stack */
H5Eclear();
/* Check for overflow */
if (HADDR_UNDEF==addr)
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
if (REGION_OVERFLOW(addr, size))
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
if (addr+size>file->eoa)
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
/* Check easy cases */
if (0 == size)
return(0);
if ((haddr_t)addr >= file->eof) {
memset(buf, 0, size);
return(0);
}
/*
* Seek to the correct file position.
*/
if (!(file->op == H5FD_STDIO_OP_READ || file->op==H5FD_STDIO_OP_SEEK) ||
file->pos != addr) {
#ifdef WIN32
fpos_t tempos =(fpos_t)(addr+SEEK_SET);
if (fsetpos(file->fp,&tempos)!=0) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "fsetpos failed", -1);
}
#else
if (fseek(file->fp, (long)addr, SEEK_SET) < 0) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "fseek failed", -1);
}
#endif
file->pos = addr;
}
/*
* Read zeros past the logical end of file (physical is handled below)
*/
if ((size_t) addr + size > file->eof) {
size_t nbytes = (size_t) (addr + size - file->eof);
memset((unsigned char *)buf + size - nbytes, 0, nbytes);
size -= nbytes;
}
/*
* Read the data. Since we're reading single-byte values, a partial read
* will advance the file position by N. If N is negative or an error
* occurs then the file position is undefined.
*/
n = fread(buf, 1, size, file->fp);
if (n <= 0 && ferror(file->fp)) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_READERROR, "fread failed", -1);
} else if (n < size) {
memset((unsigned char *)buf + n, 0, (size - n));
}
/*
* Update the file position data.
*/
file->op = H5FD_STDIO_OP_READ;
file->pos = addr+n; /*checked for overflow above*/
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5F_stdio_write
*
* Purpose: Writes SIZE bytes from the beginning of BUF into file LF at
* file address ADDR.
*
* Errors:
* IO SEEKERROR Fseek failed.
* IO WRITEERROR Fwrite failed.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, October 22, 1997
*
* Modifications:
* June 2, 1998 Albert Cheng
* Added xfer_mode argument
*
* Ported to VFL/H5FD layer - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr,
size_t size, const void *buf)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
static const char *func="H5FD_stdio_write"; /* Function Name for error reporting */
/* Shut compiler up */
dxpl_id=dxpl_id;
type=type;
/* Clear the error stack */
H5Eclear();
/* Check for overflow conditions */
if (HADDR_UNDEF==addr)
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
if (REGION_OVERFLOW(addr, size))
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
if (addr+size>file->eoa)
H5Epush_ret (func, H5E_IO, H5E_OVERFLOW, "file address overflowed", -1);
/*
* Seek to the correct file position.
*/
if ((file->op != H5FD_STDIO_OP_WRITE && file->op != H5FD_STDIO_OP_SEEK) ||
file->pos != addr) {
#ifdef WIN32
fpos_t tempos =(fpos_t)(addr+SEEK_SET);
if (fsetpos(file->fp,&tempos) != 0) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "fsetpos failed", -1);
}
#else
if (fseek(file->fp, (long)addr, SEEK_SET) < 0) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "fseek failed", -1);
}
#endif /* WIN32 */
file->pos = addr;
}
/*
* Write the buffer. On successful return, the file position will be
* advanced by the number of bytes read. Otherwise nobody knows where it
* is.
*/
if (size != fwrite(buf, 1, size, file->fp)) {
file->op = H5FD_STDIO_OP_UNKNOWN;
file->pos = HADDR_UNDEF;
H5Epush_ret(func, H5E_IO, H5E_WRITEERROR, "fwrite failed", -1);
}
/*
* Update seek optimizing data.
*/
file->op = H5FD_STDIO_OP_WRITE;
file->pos = addr + size;
/* Update EOF if necessary */
if (file->pos>file->eof)
file->eof = file->pos;
return(0);
}
/*-------------------------------------------------------------------------
* Function: H5F_stdio_flush
*
* Purpose: Makes sure that all data is on disk.
*
* Errors:
* IO SEEKERROR fseek failed.
* IO WRITEERROR fflush or fwrite failed.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, October 22, 1997
*
* Modifications:
* Ported to VFL/H5FD layer - QAK, 10/18/99
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD_stdio_flush(H5FD_t *_file, hid_t dxpl_id, unsigned closing)
{
H5FD_stdio_t *file = (H5FD_stdio_t*)_file;
static const char *func="H5FD_stdio_flush"; /* Function Name for error reporting */
/* Shut compiler up */
dxpl_id=dxpl_id;
/* Clear the error stack */
H5Eclear();
/* Only try to flush the file if we have write access */
if(file->write_access) {
/* Makes sure that the true file size is the same as the end-of-address. */
if (file->eoa!=file->eof) {
int fd=fileno(file->fp); /* File descriptor for HDF5 file */
#ifdef WIN32
HFILE filehandle; /* Windows file handle */
LARGE_INTEGER li; /* 64-bit integer for SetFilePointer() call */
/* Map the posix file handle to a Windows file handle */
filehandle = _get_osfhandle(file->fd);
/* Translate 64-bit integers into form Windows wants */
/* [This algorithm is from the Windows documentation for SetFilePointer()] */
li.QuadPart = file->eoa;
SetFilePointer((HANDLE)filehandle,li.LowPart,&li.HighPart,FILE_BEGIN);
if(SetEndOfFile((HANDLE)filehandle)==0)
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "unable to extend file properly", -1);
#else /* WIN32 */
if (-1==file_truncate(fd, (file_offset_t)file->eoa))
H5Epush_ret(func, H5E_IO, H5E_SEEKERROR, "unable to extend file properly", -1);
#endif /* WIN32 */
/* Update the eof value */
file->eof = file->eoa;
/* Reset last file I/O information */
file->pos = HADDR_UNDEF;
file->op = H5FD_STDIO_OP_UNKNOWN;
} /* end if */
/*
* Flush
*/
if(!closing) {
if (fflush(file->fp) < 0)
H5Epush_ret(func, H5E_IO, H5E_WRITEERROR, "fflush failed", -1);
} /* end if */
} /* end if */
else {
/* Double-check for problems */
if (file->eoa>file->eof)
H5Epush_ret(func, H5E_IO, H5E_TRUNCATED, "eoa>eof!", -1);
} /* end else */
return(0);
}
#ifdef _H5private_H
/*
* This is not related to the functionality of the driver code.
* It is added here to trigger warning if HDF5 private definitions are included
* by mistake. The code should use only HDF5 public API and definitions.
*/
#error "Do not use HDF5 private definitions"
#endif
|