1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Purpose: The IOC VFD implements a file driver which relays all the
* VFD calls to an underlying VFD, and send all the write calls to
* another underlying VFD. Maintains two files simultaneously.
*/
/* This source code file is part of the H5FD driver module */
#include "H5FDdrvr_module.h"
#include "H5private.h" /* Generic Functions */
#include "H5FDpublic.h" /* Basic H5FD definitions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FDprivate.h" /* File drivers */
#include "H5FDioc.h" /* IOC file driver */
#include "H5FDioc_priv.h" /* IOC file driver */
#include "H5FDmpio.h" /* MPI I/O VFD */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Fprivate.h" /* File access */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
/* The driver identification number, initialized at runtime */
static hid_t H5FD_IOC_g = H5I_INVALID_HID;
/* Whether the driver initialized MPI on its own */
static hbool_t H5FD_mpi_self_initialized = FALSE;
/* Pointer to value for MPI_TAG_UB */
int *H5FD_IOC_tag_ub_val_ptr = NULL;
/* The information of this ioc */
typedef struct H5FD_ioc_t {
H5FD_t pub; /* public stuff, must be first */
int fd; /* the filesystem file descriptor */
H5FD_ioc_config_t fa; /* driver-specific file access properties */
H5FD_subfiling_params_t subf_config;
/* MPI Info */
MPI_Comm comm;
MPI_Info info;
int mpi_rank;
int mpi_size;
uint64_t file_id;
int64_t context_id; /* The value used to lookup a subfiling context for the file */
haddr_t eof;
haddr_t eoa;
haddr_t last_eoa;
haddr_t local_eof;
char *file_dir; /* Directory where we find files */
char *file_path; /* The user defined filename */
} H5FD_ioc_t;
/*
* These macros check for overflow of various quantities. These macros
* assume that HDoff_t is signed and haddr_t and size_t are unsigned.
*
* ADDR_OVERFLOW: Checks whether a file address of type `haddr_t'
* is too large to be represented by the second argument
* of the file seek function.
*
* SIZE_OVERFLOW: Checks whether a buffer size of type `hsize_t' is too
* large to be represented by the `size_t' type.
*
* REGION_OVERFLOW: Checks whether an address and size pair describe data
* which can be addressed entirely by the second
* argument of the file seek function.
*/
#define MAXADDR (((haddr_t)1 << (8 * sizeof(HDoff_t) - 1)) - 1)
#define ADDR_OVERFLOW(A) (HADDR_UNDEF == (A) || ((A) & ~(haddr_t)MAXADDR))
#define SIZE_OVERFLOW(Z) ((Z) & ~(hsize_t)MAXADDR)
#define REGION_OVERFLOW(A, Z) \
(ADDR_OVERFLOW(A) || SIZE_OVERFLOW(Z) || HADDR_UNDEF == (A) + (Z) || (HDoff_t)((A) + (Z)) < (HDoff_t)(A))
#ifdef H5FD_IOC_DEBUG
#define H5FD_IOC_LOG_CALL(name) \
do { \
printf("called %s()\n", (name)); \
fflush(stdout); \
} while (0)
#else
#define H5FD_IOC_LOG_CALL(name) /* no-op */
#endif
/* Private functions */
/* Prototypes */
static herr_t H5FD__ioc_term(void);
static hsize_t H5FD__ioc_sb_size(H5FD_t *_file);
static herr_t H5FD__ioc_sb_encode(H5FD_t *_file, char *name /*out*/, unsigned char *buf /*out*/);
static herr_t H5FD__ioc_sb_decode(H5FD_t *_file, const char *name, const unsigned char *buf);
static void *H5FD__ioc_fapl_get(H5FD_t *_file);
static void *H5FD__ioc_fapl_copy(const void *_old_fa);
static herr_t H5FD__ioc_fapl_free(void *_fapl);
static H5FD_t *H5FD__ioc_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr);
static herr_t H5FD__ioc_close(H5FD_t *_file);
static int H5FD__ioc_cmp(const H5FD_t *_f1, const H5FD_t *_f2);
static herr_t H5FD__ioc_query(const H5FD_t *_file, unsigned long *flags /* out */);
static herr_t H5FD__ioc_get_type_map(const H5FD_t *_file, H5FD_mem_t *type_map);
static haddr_t H5FD__ioc_alloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size);
static herr_t H5FD__ioc_free(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size);
static haddr_t H5FD__ioc_get_eoa(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type);
static herr_t H5FD__ioc_set_eoa(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, haddr_t addr);
static haddr_t H5FD__ioc_get_eof(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type);
static herr_t H5FD__ioc_get_handle(H5FD_t *_file, hid_t H5_ATTR_UNUSED fapl, void **file_handle);
static herr_t H5FD__ioc_read(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size,
void *buf);
static herr_t H5FD__ioc_write(H5FD_t *_file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size,
const void *buf);
static herr_t H5FD__ioc_read_vector(H5FD_t *file, hid_t dxpl_id, uint32_t count, H5FD_mem_t types[],
haddr_t addrs[], size_t sizes[], void *bufs[] /* out */);
static herr_t H5FD__ioc_write_vector(H5FD_t *file, hid_t dxpl_id, uint32_t count, H5FD_mem_t types[],
haddr_t addrs[], size_t sizes[], const void *bufs[] /* in */);
static herr_t H5FD__ioc_flush(H5FD_t *_file, hid_t dxpl_id, hbool_t closing);
static herr_t H5FD__ioc_truncate(H5FD_t *_file, hid_t dxpl_id, hbool_t closing);
static herr_t H5FD__ioc_lock(H5FD_t *_file, hbool_t rw);
static herr_t H5FD__ioc_unlock(H5FD_t *_file);
static herr_t H5FD__ioc_del(const char *name, hid_t fapl);
/*
static herr_t H5FD__ioc_ctl(H5FD_t *file, uint64_t op_code, uint64_t flags,
const void *input, void **result);
*/
static herr_t H5FD__ioc_get_default_config(H5FD_ioc_config_t *config_out);
static herr_t H5FD__ioc_validate_config(const H5FD_ioc_config_t *fa);
static herr_t H5FD__ioc_close_int(H5FD_ioc_t *file_ptr);
static herr_t H5FD__ioc_write_vector_internal(H5FD_t *_file, uint32_t count, H5FD_mem_t types[],
haddr_t addrs[], size_t sizes[],
const void *bufs[] /* data_in */);
static herr_t H5FD__ioc_read_vector_internal(H5FD_t *_file, uint32_t count, haddr_t addrs[], size_t sizes[],
void *bufs[] /* data_out */);
static const H5FD_class_t H5FD_ioc_g = {
H5FD_CLASS_VERSION, /* VFD interface version */
H5_VFD_IOC, /* value */
H5FD_IOC_NAME, /* name */
MAXADDR, /* maxaddr */
H5F_CLOSE_WEAK, /* fc_degree */
H5FD__ioc_term, /* terminate */
H5FD__ioc_sb_size, /* sb_size */
H5FD__ioc_sb_encode, /* sb_encode */
H5FD__ioc_sb_decode, /* sb_decode */
sizeof(H5FD_ioc_config_t), /* fapl_size */
H5FD__ioc_fapl_get, /* fapl_get */
H5FD__ioc_fapl_copy, /* fapl_copy */
H5FD__ioc_fapl_free, /* fapl_free */
0, /* dxpl_size */
NULL, /* dxpl_copy */
NULL, /* dxpl_free */
H5FD__ioc_open, /* open */
H5FD__ioc_close, /* close */
H5FD__ioc_cmp, /* cmp */
H5FD__ioc_query, /* query */
H5FD__ioc_get_type_map, /* get_type_map */
H5FD__ioc_alloc, /* alloc */
H5FD__ioc_free, /* free */
H5FD__ioc_get_eoa, /* get_eoa */
H5FD__ioc_set_eoa, /* set_eoa */
H5FD__ioc_get_eof, /* get_eof */
H5FD__ioc_get_handle, /* get_handle */
H5FD__ioc_read, /* read */
H5FD__ioc_write, /* write */
H5FD__ioc_read_vector, /* read_vector */
H5FD__ioc_write_vector, /* write_vector */
NULL, /* read_selection */
NULL, /* write_selection */
H5FD__ioc_flush, /* flush */
H5FD__ioc_truncate, /* truncate */
H5FD__ioc_lock, /* lock */
H5FD__ioc_unlock, /* unlock */
H5FD__ioc_del, /* del */
NULL, /* ctl */
H5FD_FLMAP_DICHOTOMY /* fl_map */
};
/* Declare a free list to manage the H5FD_ioc_t struct */
H5FL_DEFINE_STATIC(H5FD_ioc_t);
/* Declare a free list to manage the H5FD_ioc_config_t struct */
H5FL_DEFINE_STATIC(H5FD_ioc_config_t);
/*-------------------------------------------------------------------------
* Function: H5FD_ioc_init
*
* Purpose: Initialize the IOC driver by registering it with the
* library.
*
* Return: Success: The driver ID for the ioc driver.
* Failure: Negative
*-------------------------------------------------------------------------
*/
hid_t
H5FD_ioc_init(void)
{
hid_t ret_value = H5I_INVALID_HID;
H5FD_IOC_LOG_CALL(__func__);
/* Register the IOC VFD, if it isn't already registered */
if (H5I_VFL != H5I_get_type(H5FD_IOC_g)) {
char *env_var;
int key_val_retrieved = 0;
int mpi_code;
if ((H5FD_IOC_g = H5FD_register(&H5FD_ioc_g, sizeof(H5FD_class_t), FALSE)) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_ID, H5E_CANTREGISTER, H5I_INVALID_HID, "can't register IOC VFD");
/* Check if IOC VFD has been loaded dynamically */
env_var = HDgetenv(HDF5_DRIVER);
if (env_var && !HDstrcmp(env_var, H5FD_IOC_NAME)) {
int mpi_initialized = 0;
int provided = 0;
/* Initialize MPI if not already initialized */
if (MPI_SUCCESS != (mpi_code = MPI_Initialized(&mpi_initialized)))
H5_SUBFILING_MPI_GOTO_ERROR(H5I_INVALID_HID, "MPI_Initialized failed", mpi_code);
if (mpi_initialized) {
/* If MPI is initialized, validate that it was initialized with MPI_THREAD_MULTIPLE */
if (MPI_SUCCESS != (mpi_code = MPI_Query_thread(&provided)))
H5_SUBFILING_MPI_GOTO_ERROR(H5I_INVALID_HID, "MPI_Query_thread failed", mpi_code);
if (provided != MPI_THREAD_MULTIPLE)
H5_SUBFILING_GOTO_ERROR(
H5E_VFL, H5E_CANTINIT, H5I_INVALID_HID,
"IOC VFD requires the use of MPI_Init_thread with MPI_THREAD_MULTIPLE");
}
else {
int required = MPI_THREAD_MULTIPLE;
/* Otherwise, initialize MPI */
if (MPI_SUCCESS != (mpi_code = MPI_Init_thread(NULL, NULL, required, &provided)))
H5_SUBFILING_MPI_GOTO_ERROR(H5I_INVALID_HID, "MPI_Init_thread failed", mpi_code);
H5FD_mpi_self_initialized = TRUE;
if (provided != required)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTINIT, H5I_INVALID_HID,
"MPI doesn't support MPI_Init_thread with MPI_THREAD_MULTIPLE");
}
}
/* Retrieve upper bound for MPI message tag value */
if (MPI_SUCCESS != (mpi_code = MPI_Comm_get_attr(MPI_COMM_WORLD, MPI_TAG_UB, &H5FD_IOC_tag_ub_val_ptr,
&key_val_retrieved)))
H5_SUBFILING_MPI_GOTO_ERROR(H5I_INVALID_HID, "MPI_Comm_get_attr failed", mpi_code);
if (!key_val_retrieved)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTINIT, H5I_INVALID_HID,
"couldn't retrieve value for MPI_TAG_UB");
}
ret_value = H5FD_IOC_g;
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD_ioc_init() */
/*---------------------------------------------------------------------------
* Function: H5FD__ioc_term
*
* Purpose: Shut down the IOC VFD.
*
* Returns: SUCCEED (Can't fail)
*---------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_term(void)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
if (H5FD_IOC_g >= 0) {
/* Terminate MPI if the driver initialized it */
if (H5FD_mpi_self_initialized) {
int mpi_finalized = 0;
int mpi_code;
if (MPI_SUCCESS != (mpi_code = MPI_Finalized(&mpi_finalized)))
H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Finalized failed", mpi_code);
if (!mpi_finalized) {
if (MPI_SUCCESS != (mpi_code = MPI_Finalize()))
H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Finalize failed", mpi_code);
}
H5FD_mpi_self_initialized = FALSE;
}
}
done:
/* Reset VFL ID */
H5FD_IOC_g = H5I_INVALID_HID;
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_term() */
/*-------------------------------------------------------------------------
* Function: H5Pset_fapl_ioc
*
* Purpose: Sets the file access property list to use the
* ioc driver.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
herr_t
H5Pset_fapl_ioc(hid_t fapl_id, H5FD_ioc_config_t *vfd_config)
{
H5FD_ioc_config_t *ioc_conf = NULL;
H5P_genplist_t *plist_ptr = NULL;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
if (NULL == (plist_ptr = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list");
if (vfd_config == NULL) {
if (NULL == (ioc_conf = H5FL_CALLOC(H5FD_ioc_config_t)))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL,
"can't allocate IOC VFD configuration");
/* Get IOC VFD defaults */
if (H5FD__ioc_get_default_config(ioc_conf) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't get default IOC VFD configuration");
vfd_config = ioc_conf;
}
if (H5FD__ioc_validate_config(vfd_config) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid IOC VFD configuration");
ret_value = H5P_set_driver(plist_ptr, H5FD_IOC, vfd_config, NULL);
done:
if (ioc_conf) {
H5FL_FREE(H5FD_ioc_config_t, ioc_conf);
}
H5_SUBFILING_FUNC_LEAVE;
} /* end H5Pset_fapl_ioc() */
/*-------------------------------------------------------------------------
* Function: H5Pget_fapl_ioc
*
* Purpose: Returns information about the ioc file access property
* list through the structure config_out.
*
* Will fail if config_out is received without pre-set valid
* magic and version information.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
herr_t
H5Pget_fapl_ioc(hid_t fapl_id, H5FD_ioc_config_t *config_out)
{
const H5FD_ioc_config_t *config_ptr = NULL;
H5P_genplist_t *plist_ptr = NULL;
hbool_t use_default_config = FALSE;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* Check arguments */
if (config_out == NULL)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "config_out is NULL");
if (NULL == (plist_ptr = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list");
if (H5FD_IOC != H5P_peek_driver(plist_ptr))
use_default_config = TRUE;
else {
config_ptr = H5P_peek_driver_info(plist_ptr);
if (NULL == config_ptr)
use_default_config = TRUE;
}
if (use_default_config) {
if (H5FD__ioc_get_default_config(config_out) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get default IOC VFD configuration");
}
else {
/* Copy the IOC fapl data out */
memcpy(config_out, config_ptr, sizeof(H5FD_ioc_config_t));
}
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5Pget_fapl_ioc() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_get_default_config
*
* Purpose: This is called by H5Pset/get_fapl_ioc when called with no
* established configuration info. This simply fills in
* the basics. This avoids the necessity of having the
* user write code to initialize the config structure.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_get_default_config(H5FD_ioc_config_t *config_out)
{
herr_t ret_value = SUCCEED;
assert(config_out);
memset(config_out, 0, sizeof(*config_out));
config_out->magic = H5FD_IOC_FAPL_MAGIC;
config_out->version = H5FD_IOC_CURR_FAPL_VERSION;
config_out->thread_pool_size = H5FD_IOC_DEFAULT_THREAD_POOL_SIZE;
H5_SUBFILING_FUNC_LEAVE;
}
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_validate_config()
*
* Purpose: Test to see if the supplied instance of
* H5FD_ioc_config_t contains internally consistent data.
* Return SUCCEED if so, and FAIL otherwise.
*
* Note the difference between internally consistent and
* correct. As we will have to try to setup the IOC to
* determine whether the supplied data is correct,
* we will settle for internal consistency at this point
*
* Return: SUCCEED if instance of H5FD_ioc_config_t contains
* internally consistent data, FAIL otherwise.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_validate_config(const H5FD_ioc_config_t *fa)
{
herr_t ret_value = SUCCEED;
assert(fa != NULL);
if (fa->version != H5FD_IOC_CURR_FAPL_VERSION)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "Unknown H5FD_ioc_config_t version");
if (fa->magic != H5FD_IOC_FAPL_MAGIC)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid H5FD_ioc_config_t magic value");
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_validate_config() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_sb_size
*
* Purpose: Obtains the number of bytes required to store the driver
* file access data in the HDF5 superblock.
*
* Return: Success: Number of bytes required.
*
* Failure: 0 if an error occurs or if the driver has no
* data to store in the superblock.
*
*-------------------------------------------------------------------------
*/
static hsize_t
H5FD__ioc_sb_size(H5FD_t H5_ATTR_UNUSED *_file)
{
hsize_t ret_value = 0;
H5FD_IOC_LOG_CALL(__func__);
/* Configuration structure magic number */
ret_value += sizeof(uint32_t);
/* Configuration structure version number */
ret_value += sizeof(uint32_t);
/* IOC thread pool size */
ret_value += sizeof(int32_t);
/* Subfiling stripe size */
ret_value += sizeof(int64_t);
/* Subfiling stripe count (encoded as int64_t for future) */
ret_value += sizeof(int64_t);
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_sb_size */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_sb_encode
*
* Purpose: Encode driver-specific data into the output arguments.
*
* Return: Non-negative on success/Negative on failure
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_sb_encode(H5FD_t *_file, char *name, unsigned char *buf)
{
subfiling_context_t *sf_context = NULL;
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
uint8_t *p = (uint8_t *)buf;
int64_t tmp64;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
if (NULL == (sf_context = H5_get_subfiling_object(file->context_id)))
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "can't get subfiling context object");
/* Encode driver name */
HDstrncpy(name, "IOC", 9);
name[8] = '\0';
/* Encode configuration structure magic number */
UINT32ENCODE(p, file->fa.magic);
/* Encode configuration structure version number */
UINT32ENCODE(p, file->fa.version);
/* Encode thread pool size field */
INT32ENCODE(p, file->fa.thread_pool_size);
/* Encode subfiling stripe size */
INT64ENCODE(p, sf_context->sf_stripe_size);
/* Encode subfiling stripe count (number of subfiles) */
tmp64 = sf_context->sf_num_subfiles;
INT64ENCODE(p, tmp64);
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_sb_encode */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_sb_decode
*
* Purpose: Decodes the driver information block.
*
* Return: Non-negative on success/Negative on failure
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_sb_decode(H5FD_t *_file, const char *name, const unsigned char *buf)
{
subfiling_context_t *sf_context = NULL;
const uint8_t *p = (const uint8_t *)buf;
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
int64_t tmp64;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
if (NULL == (sf_context = H5_get_subfiling_object(file->context_id)))
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "can't get subfiling context object");
if (HDstrncmp(name, "IOC", 9))
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "invalid driver name in superblock");
/* Decode configuration structure magic number */
UINT32DECODE(p, file->fa.magic);
/* Decode configuration structure version number */
UINT32DECODE(p, file->fa.version);
/* Decode thread pool size field */
INT32DECODE(p, file->fa.thread_pool_size);
/* Decode subfiling stripe size */
INT64DECODE(p, file->subf_config.stripe_size);
/* Decode subfiling stripe count */
INT64DECODE(p, tmp64);
H5_CHECK_OVERFLOW(tmp64, int64_t, int32_t);
file->subf_config.stripe_count = (int32_t)tmp64;
/* Validate the decoded configuration */
if (H5FD__ioc_validate_config(&file->fa) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL, "decoded IOC VFD configuration info is invalid");
if (H5_subfiling_validate_config(&file->subf_config) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL,
"decoded subfiling configuration parameters are invalid");
if (file->subf_config.stripe_size != sf_context->sf_stripe_size)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, FAIL,
"specified subfiling stripe size (%" PRId64
") doesn't match value stored in file (%" PRId64 ")",
sf_context->sf_stripe_size, file->subf_config.stripe_size);
if (file->subf_config.stripe_count != sf_context->sf_num_subfiles)
H5_SUBFILING_GOTO_ERROR(
H5E_VFL, H5E_BADVALUE, FAIL,
"specified subfiling stripe count (%d) doesn't match value stored in file (%" PRId32 ")",
sf_context->sf_num_subfiles, file->subf_config.stripe_count);
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_sb_decode */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_fapl_get
*
* Purpose: Returns a file access property list which indicates how the
* specified file is being accessed. The return list could be
* used to access another file the same way.
*
* Return: Success: Ptr to new file access property list with all
* members copied from the file struct.
* Failure: NULL
*-------------------------------------------------------------------------
*/
static void *
H5FD__ioc_fapl_get(H5FD_t *_file)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
void *ret_value = NULL;
H5FD_IOC_LOG_CALL(__func__);
ret_value = H5FD__ioc_fapl_copy(&(file->fa));
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_fapl_get() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_fapl_copy
*
* Purpose: Copies the file access properties.
*
* Return: Success: Pointer to a new property list info structure.
* Failure: NULL
*-------------------------------------------------------------------------
*/
static void *
H5FD__ioc_fapl_copy(const void *_old_fa)
{
const H5FD_ioc_config_t *old_fa_ptr = (const H5FD_ioc_config_t *)_old_fa;
H5FD_ioc_config_t *new_fa_ptr = NULL;
void *ret_value = NULL;
H5FD_IOC_LOG_CALL(__func__);
assert(old_fa_ptr);
new_fa_ptr = H5FL_CALLOC(H5FD_ioc_config_t);
if (NULL == new_fa_ptr)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "unable to allocate log file FAPL");
memcpy(new_fa_ptr, old_fa_ptr, sizeof(H5FD_ioc_config_t));
ret_value = (void *)new_fa_ptr;
done:
if (NULL == ret_value)
if (new_fa_ptr)
new_fa_ptr = H5FL_FREE(H5FD_ioc_config_t, new_fa_ptr);
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_fapl_copy() */
/*--------------------------------------------------------------------------
* Function: H5FD__ioc_fapl_free
*
* Purpose: Releases the file access lists
*
* Return: SUCCEED/FAIL
*--------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_fapl_free(void *_fapl)
{
H5FD_ioc_config_t *fapl = (H5FD_ioc_config_t *)_fapl;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* Check arguments */
assert(fapl);
/* Free the property list */
fapl = H5FL_FREE(H5FD_ioc_config_t, fapl);
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_fapl_free() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_open
*
* Purpose: Create and/or opens a file as an HDF5 file.
*
* Return: Success: A pointer to a new file data structure. The
* public fields will be initialized by the
* caller, which is always H5FD_open().
* Failure: NULL
*-------------------------------------------------------------------------
*/
static H5FD_t *
H5FD__ioc_open(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr)
{
H5FD_ioc_t *file_ptr = NULL; /* Ioc VFD info */
const H5FD_ioc_config_t *config_ptr = NULL; /* Driver-specific property list */
subfiling_context_t *sf_context = NULL;
H5FD_ioc_config_t default_config;
H5P_genplist_t *plist_ptr = NULL;
int ioc_flags;
int mpi_inited = 0;
int mpi_code; /* MPI return code */
H5FD_t *ret_value = NULL;
H5FD_IOC_LOG_CALL(__func__);
/* Check arguments */
if (!name || !*name)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "invalid file name");
if (0 == maxaddr || HADDR_UNDEF == maxaddr)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADRANGE, NULL, "bogus maxaddr");
if (ADDR_OVERFLOW(maxaddr))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, NULL, "bogus maxaddr");
if (NULL == (file_ptr = (H5FD_ioc_t *)H5FL_CALLOC(H5FD_ioc_t)))
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTALLOC, NULL, "unable to allocate file struct");
file_ptr->comm = MPI_COMM_NULL;
file_ptr->info = MPI_INFO_NULL;
file_ptr->file_id = UINT64_MAX;
file_ptr->context_id = -1;
/* Initialize file pointer's subfiling parameters */
file_ptr->subf_config.ioc_selection = SELECT_IOC_ONE_PER_NODE;
file_ptr->subf_config.stripe_size = H5FD_SUBFILING_DEFAULT_STRIPE_SIZE;
file_ptr->subf_config.stripe_count = H5FD_SUBFILING_DEFAULT_STRIPE_COUNT;
/* Get the driver-specific file access properties */
if (NULL == (plist_ptr = (H5P_genplist_t *)H5I_object(fapl_id)))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list");
if (H5FD_mpi_self_initialized) {
file_ptr->comm = MPI_COMM_WORLD;
file_ptr->info = MPI_INFO_NULL;
mpi_inited = 1;
}
else {
/* Get the MPI communicator and info object from the property list */
if (H5P_get(plist_ptr, H5F_ACS_MPI_PARAMS_COMM_NAME, &file_ptr->comm) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get MPI communicator");
if (H5P_get(plist_ptr, H5F_ACS_MPI_PARAMS_INFO_NAME, &file_ptr->info) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get MPI info object");
if (file_ptr->comm == MPI_COMM_NULL)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_BADVALUE, NULL, "invalid or unset MPI communicator in FAPL");
/* Get the status of MPI initialization */
if (MPI_SUCCESS != (mpi_code = MPI_Initialized(&mpi_inited)))
H5_SUBFILING_MPI_GOTO_ERROR(NULL, "MPI_Initialized failed", mpi_code);
if (!mpi_inited)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_UNINITIALIZED, NULL, "MPI has not been initialized");
}
/* Get the MPI rank of this process and the total number of processes */
if (MPI_SUCCESS != (mpi_code = MPI_Comm_rank(file_ptr->comm, &file_ptr->mpi_rank)))
H5_SUBFILING_MPI_GOTO_ERROR(NULL, "MPI_Comm_rank failed", mpi_code);
if (MPI_SUCCESS != (mpi_code = MPI_Comm_size(file_ptr->comm, &file_ptr->mpi_size)))
H5_SUBFILING_MPI_GOTO_ERROR(NULL, "MPI_Comm_size failed", mpi_code);
config_ptr = H5P_peek_driver_info(plist_ptr);
if (!config_ptr || (H5P_FILE_ACCESS_DEFAULT == fapl_id)) {
if (H5FD__ioc_get_default_config(&default_config) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get default IOC VFD configuration");
config_ptr = &default_config;
}
/* Fill in the file config values */
memcpy(&file_ptr->fa, config_ptr, sizeof(H5FD_ioc_config_t));
/* Fully resolve the given filepath and get its dirname */
if (H5_resolve_pathname(name, file_ptr->comm, &file_ptr->file_path) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't resolve filepath");
if (H5_dirname(file_ptr->file_path, &file_ptr->file_dir) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTGET, NULL, "can't get filepath dirname");
/* Translate the HDF5 file open flags into standard POSIX open flags */
ioc_flags = (H5F_ACC_RDWR & flags) ? O_RDWR : O_RDONLY;
if (H5F_ACC_TRUNC & flags)
ioc_flags |= O_TRUNC;
if (H5F_ACC_CREAT & flags)
ioc_flags |= O_CREAT;
if (H5F_ACC_EXCL & flags)
ioc_flags |= O_EXCL;
if (NULL == (plist_ptr = (H5P_genplist_t *)H5I_object(fapl_id)))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "not a file access property list");
/* Retrieve the subfiling configuration for the current file */
if (H5_subfiling_get_config_prop(plist_ptr, &file_ptr->subf_config) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get subfiling configuration from FAPL");
if (H5_subfiling_validate_config(&file_ptr->subf_config) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_BADVALUE, NULL, "invalid subfiling configuration");
/* Retrieve the HDF5 stub file ID for the current file */
if (H5_subfiling_get_file_id_prop(plist_ptr, &file_ptr->file_id) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "can't get stub file ID from FAPL");
if (file_ptr->file_id == UINT64_MAX) {
/* Since this VFD does no displaying of error stacks itself
* (it relies on the Subfiling VFD to do this), we must print
* the error stack here if we know it wasn't stacked under the
* Subfiling VFD.
*/
H5_SUBFILING_DONE_ERROR(
H5E_PLIST, H5E_BADVALUE, NULL,
"subfiling stub file ID property was missing from FAPL - IOC VFD wasn't correctly stacked under "
"the Subfiling VFD and cannot currently be used alone");
PRINT_ERROR_STACK;
goto done;
}
/*
* Open the subfiles for this HDF5 file. A subfiling
* context ID will be returned, which is used for
* further interactions with this file's subfiles.
*/
if (H5_open_subfiles(file_ptr->file_path, file_ptr->file_id, &file_ptr->subf_config, ioc_flags,
file_ptr->comm, &file_ptr->context_id) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to open subfiles for file '%s'",
name);
/* Initialize I/O concentrator threads if this MPI rank is an I/O concentrator */
sf_context = H5_get_subfiling_object(file_ptr->context_id);
if (sf_context && sf_context->topology->rank_is_ioc) {
if (initialize_ioc_threads(sf_context) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL,
"unable to initialize I/O concentrator threads");
}
ret_value = (H5FD_t *)file_ptr;
done:
/*
* Check if any ranks failed before exit. The objective
* here is twofold:
*
* - prevent possible hangs caused by ranks sending
* messages to I/O concentrators that failed and
* didn't spin up
* - use the barrier semantics of MPI_Allreduce to
* ensure that the I/O concentrators are fully up
* and running before proceeding.
*/
if (mpi_inited) {
MPI_Comm reduce_comm = MPI_COMM_WORLD;
int mpi_size = -1;
int err_result = (ret_value == NULL);
if (file_ptr && (file_ptr->comm != MPI_COMM_NULL))
reduce_comm = file_ptr->comm;
if (MPI_SUCCESS != (mpi_code = MPI_Comm_size(reduce_comm, &mpi_size)))
H5_SUBFILING_MPI_DONE_ERROR(NULL, "MPI_Comm_size failed", mpi_code);
if (mpi_size > 1) {
if (MPI_SUCCESS !=
(mpi_code = MPI_Allreduce(MPI_IN_PLACE, &err_result, 1, MPI_INT, MPI_MAX, reduce_comm)))
H5_SUBFILING_MPI_DONE_ERROR(NULL, "MPI_Allreduce failed", mpi_code);
}
if (err_result)
H5_SUBFILING_DONE_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL,
"one or more MPI ranks were unable to open file '%s'", name);
}
if (NULL == ret_value) {
if (file_ptr) {
if (H5FD__ioc_close_int(file_ptr) < 0)
H5_SUBFILING_DONE_ERROR(H5E_FILE, H5E_CLOSEERROR, NULL, "can't close IOC file");
}
} /* end if error */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_open() */
static herr_t
H5FD__ioc_close_int(H5FD_ioc_t *file_ptr)
{
int mpi_finalized;
int mpi_code;
herr_t ret_value = SUCCEED;
assert(file_ptr);
if (MPI_SUCCESS != (mpi_code = MPI_Finalized(&mpi_finalized)))
H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Finalized failed", mpi_code);
if (file_ptr->context_id >= 0) {
subfiling_context_t *sf_context = H5_get_subfiling_object(file_ptr->context_id);
/* Don't allow IOC threads to be finalized until everyone gets here */
if (!mpi_finalized && (file_ptr->mpi_size > 1))
if (MPI_SUCCESS != (mpi_code = MPI_Barrier(file_ptr->comm)))
H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Barrier failed", mpi_code);
if (sf_context && sf_context->topology->rank_is_ioc) {
if (finalize_ioc_threads(sf_context) < 0)
/* Note that closing of subfiles is collective */
H5_SUBFILING_DONE_ERROR(H5E_VFL, H5E_CANTCLOSEFILE, FAIL, "unable to finalize IOC threads");
}
if (H5_close_subfiles(file_ptr->context_id, file_ptr->comm) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTCLOSEFILE, FAIL, "unable to close subfiling file(s)");
file_ptr->context_id = -1;
}
if (!mpi_finalized) {
if (H5_mpi_comm_free(&file_ptr->comm) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "unable to free MPI Communicator");
if (H5_mpi_info_free(&file_ptr->info) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "unable to free MPI Info object");
}
done:
free(file_ptr->file_path);
file_ptr->file_path = NULL;
H5MM_free(file_ptr->file_dir);
file_ptr->file_dir = NULL;
/* Release the file info */
file_ptr = H5FL_FREE(H5FD_ioc_t, file_ptr);
H5_SUBFILING_FUNC_LEAVE;
}
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_close
*
* Purpose: Closes files
*
* Return: Success: SUCCEED
* Failure: FAIL, file not closed.
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_close(H5FD_t *_file)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
if (H5FD__ioc_close_int(file) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close IOC file");
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_close() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_cmp
*
* Purpose: Compare the keys of two files.
*
* Return: Success: A value like strcmp()
* Failure: Must never fail
*-------------------------------------------------------------------------
*/
static int
H5FD__ioc_cmp(const H5FD_t *_f1, const H5FD_t *_f2)
{
const H5FD_ioc_t *f1 = (const H5FD_ioc_t *)_f1;
const H5FD_ioc_t *f2 = (const H5FD_ioc_t *)_f2;
herr_t ret_value = 0; /* Return value */
H5FD_IOC_LOG_CALL(__func__);
assert(f1);
assert(f2);
ret_value = (f1->file_id > f2->file_id) - (f1->file_id < f2->file_id);
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_cmp */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_query
*
* Purpose: Set the flags that this VFL driver is capable of supporting.
* (listed in H5FDpublic.h)
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_query(const H5FD_t H5_ATTR_UNUSED *_file, unsigned long *flags /* out */)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* Set the VFL feature flags that this driver supports */
if (flags) {
*flags = 0;
*flags |= H5FD_FEAT_AGGREGATE_METADATA; /* OK to aggregate metadata allocations */
*flags |= H5FD_FEAT_AGGREGATE_SMALLDATA; /* OK to aggregate "small" raw data allocations */
*flags |= H5FD_FEAT_HAS_MPI; /* This driver uses MPI */
}
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_query() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_get_type_map
*
* Purpose: Retrieve the memory type mapping for this file
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_get_type_map(const H5FD_t H5_ATTR_UNUSED *_file, H5FD_mem_t H5_ATTR_UNUSED *type_map)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_get_type_map() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_alloc
*
* Purpose: Allocate file memory.
*
* Return: Address of allocated space (HADDR_UNDEF if error).
*-------------------------------------------------------------------------
*/
static haddr_t
H5FD__ioc_alloc(H5FD_t H5_ATTR_UNUSED *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUSED dxpl_id,
hsize_t H5_ATTR_UNUSED size)
{
haddr_t ret_value = HADDR_UNDEF; /* Return value */
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_alloc() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_free
*
* Purpose: Free the resources for the ioc VFD.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_free(H5FD_t H5_ATTR_UNUSED *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUSED dxpl_id,
haddr_t H5_ATTR_UNUSED addr, hsize_t H5_ATTR_UNUSED size)
{
herr_t ret_value = SUCCEED; /* Return value */
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_free() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_get_eoa
*
* Purpose: Returns the end-of-address marker for the file. The EOA
* marker is the first address past the last byte allocated in
* the format address space.
*
* Return: Success: The end-of-address-marker
*
* Failure: HADDR_UNDEF
*-------------------------------------------------------------------------
*/
static haddr_t
H5FD__ioc_get_eoa(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type)
{
const H5FD_ioc_t *file = (const H5FD_ioc_t *)_file;
haddr_t ret_value = HADDR_UNDEF;
H5FD_IOC_LOG_CALL(__func__);
/* Sanity check */
assert(file);
ret_value = file->eoa;
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_get_eoa */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_set_eoa
*
* Purpose: Set the end-of-address marker for the file. This function is
* called shortly after an existing HDF5 file is opened in order
* to tell the driver where the end of the HDF5 data is located.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_set_eoa(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, haddr_t addr)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED; /* Return value */
H5FD_IOC_LOG_CALL(__func__);
/* Sanity check */
assert(file);
file->eoa = addr;
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_set_eoa() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_get_eof
*
* Purpose: Returns the end-of-address marker for the file. The EOA
* marker is the first address past the last byte allocated in
* the format address space.
*
* Return: Success: The end-of-address-marker
*
* Failure: HADDR_UNDEF
*-------------------------------------------------------------------------
*/
static haddr_t
H5FD__ioc_get_eof(const H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type)
{
const H5FD_ioc_t *file = (const H5FD_ioc_t *)_file;
haddr_t ret_value = HADDR_UNDEF; /* Return value */
subfiling_context_t *sf_context = NULL;
H5FD_IOC_LOG_CALL(__func__);
/* Sanity check */
assert(file);
sf_context = H5_get_subfiling_object(file->context_id);
if (sf_context) {
ret_value = sf_context->sf_eof;
goto done;
}
else
ret_value = file->eof;
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_get_eof */
/*--------------------------------------------------------------------------
* Function: H5FD__ioc_get_handle
*
* Purpose: Returns a pointer to the file handle of low-level virtual
* file driver.
*
* Return: SUCCEED/FAIL
*--------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_get_handle(H5FD_t H5_ATTR_UNUSED *_file, hid_t H5_ATTR_UNUSED fapl,
void H5_ATTR_UNUSED **file_handle)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_get_handle */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_read
*
* Purpose: Reads SIZE bytes of data from the R/W channel, beginning at
* address ADDR into buffer BUF according to data transfer
* properties in DXPL_ID.
*
* Return: Success: SUCCEED
* The read result is written into the BUF buffer
* which should be allocated by the caller.
* Failure: FAIL
* The contents of BUF are undefined.
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_read(H5FD_t *_file, H5FD_mem_t H5_ATTR_UNUSED type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr,
size_t size, void *buf)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
assert(file && file->pub.cls);
assert(buf);
/* Check for overflow conditions */
if (!H5_addr_defined(addr))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "addr undefined, addr = %" PRIuHADDR, addr);
if (REGION_OVERFLOW(addr, size))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_OVERFLOW, FAIL, "addr overflow, addr = %" PRIuHADDR, addr);
ret_value = H5FD__ioc_read_vector_internal(_file, 1, &addr, &size, &buf);
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_read() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_write
*
* Purpose: Writes SIZE bytes of data to IOC file, beginning at address
* ADDR from buffer BUF according to data transfer properties
* in DXPL_ID.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_write(H5FD_t *_file, H5FD_mem_t type, hid_t H5_ATTR_UNUSED dxpl_id, haddr_t addr, size_t size,
const void *buf)
{
herr_t ret_value = SUCCEED;
addr += _file->base_addr;
ret_value = H5FD__ioc_write_vector_internal(_file, 1, &type, &addr, &size, &buf);
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_write() */
static herr_t
H5FD__ioc_read_vector(H5FD_t *_file, hid_t dxpl_id, uint32_t count, H5FD_mem_t types[], haddr_t addrs[],
size_t sizes[], void *bufs[] /* out */)
{
H5FD_ioc_t *file_ptr = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED; /* Return value */
/* Check arguments */
if (!file_ptr)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file pointer cannot be NULL");
if ((!types) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"types parameter can't be NULL if count is positive");
if ((!addrs) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"addrs parameter can't be NULL if count is positive");
if ((!sizes) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"sizes parameter can't be NULL if count is positive");
if ((!bufs) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"bufs parameter can't be NULL if count is positive");
/* Get the default dataset transfer property list if the user didn't provide
* one */
if (H5P_DEFAULT == dxpl_id) {
dxpl_id = H5P_DATASET_XFER_DEFAULT;
}
else {
if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data transfer property list");
}
ret_value = H5FD__ioc_read_vector_internal(_file, count, addrs, sizes, bufs);
done:
H5_SUBFILING_FUNC_LEAVE;
}
static herr_t
H5FD__ioc_write_vector(H5FD_t *_file, hid_t dxpl_id, uint32_t count, H5FD_mem_t types[], haddr_t addrs[],
size_t sizes[], const void *bufs[] /* in */)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED; /* Return value */
/* Check arguments */
if (!file)
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "file pointer cannot be NULL");
if ((!types) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"types parameter can't be NULL if count is positive");
if ((!addrs) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"addrs parameter can't be NULL if count is positive");
if ((!sizes) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"sizes parameter can't be NULL if count is positive");
if ((!bufs) && (count > 0))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,
"bufs parameter can't be NULL if count is positive");
/* Get the default dataset transfer property list if the user didn't provide
* one */
if (H5P_DEFAULT == dxpl_id) {
dxpl_id = H5P_DATASET_XFER_DEFAULT;
}
else {
if (TRUE != H5P_isa_class(dxpl_id, H5P_DATASET_XFER))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data transfer property list");
}
ret_value = H5FD__ioc_write_vector_internal(_file, count, types, addrs, sizes, bufs);
done:
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FDioc__write_vector() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_flush
*
* Purpose: Flushes all data to disk for underlying VFD.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_flush(H5FD_t H5_ATTR_UNUSED *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_UNUSED closing)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_flush() */
/*-------------------------------------------------------------------------
* Function: H5FD__ioc_truncate
*
* Purpose: Notify driver to truncate the file back to the allocated size.
*
* Return: SUCCEED/FAIL
*-------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_truncate(H5FD_t *_file, hid_t H5_ATTR_UNUSED dxpl_id, hbool_t H5_ATTR_UNUSED closing)
{
H5FD_ioc_t *file = (H5FD_ioc_t *)_file;
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
assert(file);
/* TODO: placeholder for now since Subfiling does the truncation */
if (!H5_addr_eq(file->eoa, file->last_eoa)) {
file->last_eoa = file->eoa;
}
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_truncate */
/*--------------------------------------------------------------------------
* Function: H5FD__ioc_lock
*
* Purpose: Sets a file lock.
*
* Return: SUCCEED/FAIL
*--------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_lock(H5FD_t H5_ATTR_UNUSED *_file, hbool_t H5_ATTR_UNUSED rw)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_lock */
/*--------------------------------------------------------------------------
* Function: H5FD__ioc_unlock
*
* Purpose: Removes a file lock.
*
* Return: SUCCEED/FAIL
*--------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_unlock(H5FD_t H5_ATTR_UNUSED *_file)
{
herr_t ret_value = SUCCEED;
H5FD_IOC_LOG_CALL(__func__);
/* TODO: placeholder for now */
H5_SUBFILING_FUNC_LEAVE;
} /* end H5FD__ioc_unlock */
static herr_t
H5FD__ioc_del(const char *name, hid_t fapl)
{
H5P_genplist_t *plist;
h5_stat_t st;
MPI_Comm comm = MPI_COMM_NULL;
MPI_Info info = MPI_INFO_NULL;
FILE *config_file = NULL;
char *tmp_filename = NULL;
char *base_filename = NULL;
char *file_dirname = NULL;
int mpi_rank = INT_MAX;
int mpi_code;
herr_t ret_value = SUCCEED;
/* TODO: Eventually this routine should share common code
* with H5_subfiling_common's routines so it doesn't get
* out of sync
*/
if (NULL == (plist = H5P_object_verify(fapl, H5P_FILE_ACCESS)))
H5_SUBFILING_GOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list");
assert(H5FD_IOC == H5P_peek_driver(plist));
if (H5FD_mpi_self_initialized) {
comm = MPI_COMM_WORLD;
}
else {
/* Get the MPI communicator and info from the fapl */
if (H5P_get(plist, H5F_ACS_MPI_PARAMS_INFO_NAME, &info) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI info object");
if (H5P_get(plist, H5F_ACS_MPI_PARAMS_COMM_NAME, &comm) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get MPI communicator");
}
/* Get the MPI rank of this process */
if (MPI_SUCCESS != (mpi_code = MPI_Comm_rank(comm, &mpi_rank)))
H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Comm_rank failed", mpi_code);
if (mpi_rank == 0) {
int64_t read_n_subfiles = 0;
int32_t n_subfiles = 0;
char *prefix_env = NULL;
int num_digits = 0;
if (HDstat(name, &st) < 0)
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_SYSERRSTR, FAIL, "HDstat failed");
if (H5_basename(name, &base_filename) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't get file basename");
if (H5_dirname(name, &file_dirname) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't get file dirname");
/* Try to open the subfiling configuration file and get the number of IOCs */
if (NULL == (tmp_filename = malloc(PATH_MAX)))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL,
"can't allocate config file name buffer");
/* Check if a prefix has been set for the configuration file name */
prefix_env = HDgetenv(H5FD_SUBFILING_CONFIG_FILE_PREFIX);
/* TODO: No support for subfile directory prefix currently */
/* TODO: Possibly try loading config file prefix from file before deleting */
HDsnprintf(tmp_filename, PATH_MAX, "%s/" H5FD_SUBFILING_CONFIG_FILENAME_TEMPLATE,
prefix_env ? prefix_env : file_dirname, base_filename, (uint64_t)st.st_ino);
if (NULL == (config_file = fopen(tmp_filename, "r"))) {
if (ENOENT == errno) {
#ifdef H5FD_IOC_DEBUG
printf("** WARNING: couldn't delete Subfiling configuration file '%s'\n", tmp_filename);
#endif
H5_SUBFILING_GOTO_DONE(SUCCEED);
}
else
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL,
"can't open subfiling config file");
}
if (H5_get_subfiling_config_from_file(config_file, NULL, &read_n_subfiles) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_FILE, H5E_READERROR, FAIL, "can't read subfiling config file");
H5_CHECK_OVERFLOW(read_n_subfiles, int64_t, int32_t);
n_subfiles = (int32_t)read_n_subfiles;
/* Delete the Subfiling configuration file */
if (EOF == fclose(config_file)) {
config_file = NULL;
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL,
"can't close subfiling config file");
}
config_file = NULL;
if (HDremove(tmp_filename) < 0)
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL,
"can't delete subfiling config file");
/* Try to delete each of the subfiles */
num_digits = (int)(HDlog10(n_subfiles) + 1);
for (int i = 0; i < n_subfiles; i++) {
/* TODO: No support for subfile directory prefix currently */
HDsnprintf(tmp_filename, PATH_MAX, "%s/" H5FD_SUBFILING_FILENAME_TEMPLATE, file_dirname,
base_filename, (uint64_t)st.st_ino, num_digits, i + 1, n_subfiles);
if (HDremove(tmp_filename) < 0) {
#ifdef H5FD_IOC_DEBUG
printf("** WARNING: couldn't delete subfile '%s'\n", tmp_filename);
#endif
if (ENOENT != errno)
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_CANTDELETEFILE, FAIL, "can't delete subfile");
}
}
/* Delete the HDF5 stub file */
if (HDremove(name) < 0)
H5_SUBFILING_SYS_GOTO_ERROR(H5E_FILE, H5E_CANTDELETEFILE, FAIL, "can't delete HDF5 file");
}
done:
if (config_file)
if (EOF == fclose(config_file))
H5_SUBFILING_DONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close subfiling config file");
/* Set up a barrier (don't want processes to run ahead of the delete) */
if (comm != MPI_COMM_NULL) {
int comm_size = -1;
if (MPI_SUCCESS != (mpi_code = MPI_Comm_size(comm, &comm_size)))
H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Comm_size failed", mpi_code);
if (comm_size > 1)
if (MPI_SUCCESS != (mpi_code = MPI_Barrier(comm)))
H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Barrier failed", mpi_code);
}
/* Free duplicated MPI Communicator and Info objects */
if (H5_mpi_comm_free(&comm) < 0)
H5_SUBFILING_DONE_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "unable to free MPI communicator");
if (H5_mpi_info_free(&info) < 0)
H5_SUBFILING_DONE_ERROR(H5E_VFL, H5E_CANTFREE, FAIL, "unable to free MPI info object");
free(tmp_filename);
H5MM_free(file_dirname);
H5MM_free(base_filename);
H5_SUBFILING_FUNC_LEAVE;
}
/*--------------------------------------------------------------------------
* Function: H5FD__ioc_write_vector_internal
*
* Purpose: This function takes 'count' vector entries
* and initiates an asynch write operation for each.
* By asynchronous, we mean that MPI_Isends are utilized
* to communicate the write operations to the 'count'
* IO Concentrators. The calling function will have
* decomposed the actual user IO request into the
* component segments, each IO having a maximum size
* of "stripe_depth", which is recorded in the
* subfiling_context_t 'sf_context' structure.
*
* Return: SUCCEED if no errors, FAIL otherwise.
*--------------------------------------------------------------------------
*/
static herr_t
H5FD__ioc_write_vector_internal(H5FD_t *_file, uint32_t count, H5FD_mem_t H5_ATTR_UNUSED types[],
haddr_t addrs[], size_t sizes[], const void *bufs[] /* in */)
{
subfiling_context_t *sf_context = NULL;
MPI_Request *mpi_reqs = NULL;
H5FD_ioc_t *file_ptr = (H5FD_ioc_t *)_file;
io_req_t **sf_io_reqs = NULL;
int64_t sf_context_id = -1;
herr_t ret_value = SUCCEED;
assert(_file);
assert(addrs);
assert(sizes);
assert(bufs);
if (count == 0)
H5_SUBFILING_GOTO_DONE(SUCCEED);
sf_context_id = file_ptr->context_id;
if (NULL == (sf_context = H5_get_subfiling_object(sf_context_id)))
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_CANTGET, FAIL, "can't get subfiling context from ID");
assert(sf_context->topology);
/*
* Allocate an array of I/O requests and an array twice that size for
* MPI_Request objects. Each write I/O request has an MPI_Request
* object for the I/O data transfer and an MPI_Request object that,
* when waited on until completion, signifies that the actual I/O
* call (currently, HDpwrite) has completed. This is needed for ensuring
* that blocking write calls do not return early before the data is
* actually written.
*/
if (NULL == (sf_io_reqs = calloc((size_t)count, sizeof(*sf_io_reqs))))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate I/O request array");
if (NULL == (mpi_reqs = malloc(2 * (size_t)count * sizeof(*mpi_reqs))))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate MPI request array");
/* Each pass thru the following should queue an MPI write
* to a new IOC. Both the IOC selection and offset within the
* particular subfile are based on the combination of striping
* factors and the virtual file offset (addrs[i]).
*/
for (size_t i = 0; i < (size_t)count; i++) {
herr_t write_status;
if (sizes[i] == 0)
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "invalid size argument of 0");
H5_CHECK_OVERFLOW(addrs[i], haddr_t, int64_t);
H5_CHECK_OVERFLOW(sizes[i], size_t, int64_t);
write_status = ioc__write_independent_async(sf_context_id, (int64_t)addrs[i], (int64_t)sizes[i],
bufs[i], &sf_io_reqs[i]);
if (write_status < 0)
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "couldn't queue write operation");
mpi_reqs[(2 * i)] = sf_io_reqs[i]->io_transfer_req;
mpi_reqs[(2 * i) + 1] = sf_io_reqs[i]->io_comp_req;
}
/* Here, we should have queued 'count' async requests.
* We can can now try to complete those before returning
* to the caller for the next set of IO operations.
*/
if (ioc__async_completion(mpi_reqs, 2 * (size_t)count) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "can't complete I/O requests");
done:
free(mpi_reqs);
if (sf_io_reqs) {
for (size_t i = 0; i < count; i++)
free(sf_io_reqs[i]);
free(sf_io_reqs);
}
H5_SUBFILING_FUNC_LEAVE;
}
static herr_t
H5FD__ioc_read_vector_internal(H5FD_t *_file, uint32_t count, haddr_t addrs[], size_t sizes[],
void *bufs[] /* out */)
{
subfiling_context_t *sf_context = NULL;
MPI_Request *mpi_reqs = NULL;
H5FD_ioc_t *file_ptr = (H5FD_ioc_t *)_file;
io_req_t **sf_io_reqs = NULL;
int64_t sf_context_id = -1;
herr_t ret_value = SUCCEED;
assert(_file);
assert(addrs);
assert(sizes);
assert(bufs);
if (count == 0)
H5_SUBFILING_GOTO_DONE(SUCCEED);
sf_context_id = file_ptr->context_id;
if (NULL == (sf_context = H5_get_subfiling_object(sf_context_id)))
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_CANTGET, FAIL, "can't get subfiling context from ID");
assert(sf_context->topology);
/*
* Allocate an array of I/O requests and an array for MPI_Request
* objects. Each read I/O request has an MPI_Request object for the
* I/O data transfer that, when waited on until completion, signifies
* that the actual I/O call (currently, HDpread) has completed and
* the data read from the file has been transferred to the caller.
*/
if (NULL == (sf_io_reqs = calloc((size_t)count, sizeof(*sf_io_reqs))))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate I/O request array");
if (NULL == (mpi_reqs = malloc((size_t)count * sizeof(*mpi_reqs))))
H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_CANTALLOC, FAIL, "can't allocate MPI request array");
for (size_t i = 0; i < (size_t)count; i++) {
int read_status;
H5_CHECK_OVERFLOW(addrs[i], haddr_t, int64_t);
H5_CHECK_OVERFLOW(sizes[i], size_t, int64_t);
read_status = ioc__read_independent_async(sf_context_id, (int64_t)addrs[i], (int64_t)sizes[i],
bufs[i], &sf_io_reqs[i]);
if (read_status < 0)
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "couldn't queue read operation");
mpi_reqs[i] = sf_io_reqs[i]->io_transfer_req;
}
/* Here, we should have queued 'count' async requests
* (one to each required IOC).
*
* We can can now try to complete those before returning
* to the caller for the next set of IO operations.
*/
if (ioc__async_completion(mpi_reqs, (size_t)count) < 0)
H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "can't complete I/O requests");
done:
free(mpi_reqs);
if (sf_io_reqs) {
for (size_t i = 0; i < count; i++)
free(sf_io_reqs[i]);
free(sf_io_reqs);
}
H5_SUBFILING_FUNC_LEAVE;
}
|