path: root/src/H5FDsubfiling/H5FDioc_int.c

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://www.hdfgroup.org/licenses.               *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*
 * Purpose: This is part of an I/O concentrator driver.
 */

#include "H5FDioc_priv.h"

/*
 * Given a file offset, the stripe size, the
 * number of IOCs and the number of subfiles,
 * calculate the target IOC for I/O, the index
 * of the target subfile out of the subfiles
 * that the IOC controls and the file offset
 * into that subfile
 */
static inline void
calculate_target_ioc(int64_t file_offset, int64_t stripe_size, int num_io_concentrators, int num_subfiles,
                     int64_t *target_ioc, int64_t *ioc_file_offset, int64_t *ioc_subfile_idx)
{
    int64_t stripe_idx;
    int64_t subfile_row;
    int64_t subfile_idx;

    assert(stripe_size > 0);
    assert(num_io_concentrators > 0);
    assert(num_subfiles > 0);
    assert(target_ioc);
    assert(ioc_file_offset);
    assert(ioc_subfile_idx);

    stripe_idx  = file_offset / stripe_size;
    subfile_row = stripe_idx / num_subfiles;
    subfile_idx = (stripe_idx % num_subfiles) / num_io_concentrators;

    *target_ioc      = (stripe_idx % num_subfiles) % num_io_concentrators;
    *ioc_file_offset = (subfile_row * stripe_size) + (file_offset % stripe_size);
    *ioc_subfile_idx = subfile_idx;
}

/*
 * Utility routine to hack around casting away const
 */
static inline void *
cast_to_void(const void *data)
{
    union {
        const void *const_ptr_to_data;
        void       *ptr_to_data;
    } eliminate_const_warning;
    eliminate_const_warning.const_ptr_to_data = data;
    return eliminate_const_warning.ptr_to_data;
}

/*-------------------------------------------------------------------------
 * Function:    ioc__write_independent_async
 *
 * Purpose:     The IO operations can be striped across a selection of
 *              IO concentrators.  The read and write independent calls
 *              compute the group of 1 or more IOCs and further create
 *              derived MPI datatypes when required by the size of the
 *              contiguous read or write requests.
 *
 *              IOC(0) contains the logical data storage for file offset
 *              zero and all offsets that reside within modulo range of
 *              the subfiling stripe_size.
 *
 *              We cycle through all 'n_io_conentrators' and send a
 *              descriptor to each IOC that has a non-zero sized IO
 *              request to fulfill.
 *
 *              Sending descriptors to an IOC usually gets an ACK or
 *              NACK in response.  For the write operations, we post
 *              asynch READs to receive ACKs from IOC ranks that have
 *              allocated memory receive the data to write to the
 *              subfile.  Upon receiving an ACK, we send the actual
 *              user data to the IOC.
 *
 * Return:      Non-negative on success/Negative on failure
 *
 *-------------------------------------------------------------------------
 */
herr_t
ioc__write_independent_async(int64_t context_id, int64_t offset, int64_t elements, const void *data,
                             io_req_t **io_req)
{
    subfiling_context_t *sf_context    = NULL;
    MPI_Request          ack_request   = MPI_REQUEST_NULL;
    io_req_t            *sf_io_request = NULL;
    int64_t              ioc_start;
    int64_t              ioc_offset;
    int64_t              ioc_subfile_idx;
    int64_t              msg[3]           = {0};
    int                 *io_concentrators = NULL;
    int                  num_io_concentrators;
    int                  num_subfiles;
    int                  data_tag = 0;
    int                  mpi_code;
    herr_t               ret_value = SUCCEED;

    assert(io_req);

    if (NULL == (sf_context = H5_get_subfiling_object(context_id)))
        H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "can't get subfiling context from ID");
    assert(sf_context->topology);
    assert(sf_context->topology->io_concentrators);

    io_concentrators     = sf_context->topology->io_concentrators;
    num_io_concentrators = sf_context->topology->n_io_concentrators;
    num_subfiles         = sf_context->sf_num_subfiles;

    /*
     * Calculate the IOC that we'll send the I/O request to
     * and the offset within that IOC's subfile
     */
    calculate_target_ioc(offset, sf_context->sf_stripe_size, num_io_concentrators, num_subfiles, &ioc_start,
                         &ioc_offset, &ioc_subfile_idx);

    /*
     * Wait for memory to be allocated on the target IOC before
     * beginning send of user data. Once that memory has been
     * allocated, we will receive an ACK (or NACK) message from
     * the IOC to allow us to proceed.
     *
     * On ACK, the IOC will send the tag to be used for sending
     * data. This allows us to distinguish between multiple
     * concurrent writes from a single rank.
     *
     * Post an early non-blocking receive for the MPI tag here.
     */
    if (MPI_SUCCESS != (mpi_code = MPI_Irecv(&data_tag, 1, MPI_INT, io_concentrators[ioc_start],
                                             WRITE_INDEP_ACK, sf_context->sf_data_comm, &ack_request)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Irecv failed", mpi_code);

    /*
     * Prepare and send an I/O request to the IOC identified
     * by the file offset
     */
    msg[0] = elements;
    msg[1] = ioc_offset;
    msg[2] = ioc_subfile_idx;
    if (MPI_SUCCESS != (mpi_code = MPI_Send(msg, 1, H5_subfiling_rpc_msg_type, io_concentrators[ioc_start],
                                            WRITE_INDEP, sf_context->sf_msg_comm)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Send failed", mpi_code);

    /* Wait to receive the data tag from the IOC */
    if (MPI_SUCCESS != (mpi_code = MPI_Wait(&ack_request, MPI_STATUS_IGNORE)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Wait failed", mpi_code);

    if (data_tag == 0)
        H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "received NACK from IOC");

    /*
     * Allocate the I/O request object that will
     * be returned to the caller
     */
    if (NULL == (sf_io_request = malloc(sizeof(io_req_t))))
        H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_WRITEERROR, FAIL, "couldn't allocate I/O request");

    H5_CHECK_OVERFLOW(ioc_start, int64_t, int);
    sf_io_request->ioc             = (int)ioc_start;
    sf_io_request->context_id      = context_id;
    sf_io_request->offset          = offset;
    sf_io_request->elements        = elements;
    sf_io_request->data            = cast_to_void(data);
    sf_io_request->io_transfer_req = MPI_REQUEST_NULL;
    sf_io_request->io_comp_req     = MPI_REQUEST_NULL;
    sf_io_request->io_comp_tag     = -1;

    /*
     * Start a non-blocking receive from the IOC that signifies
     * when the actual write is complete
     */
    if (MPI_SUCCESS !=
        (mpi_code = MPI_Irecv(&sf_io_request->io_comp_tag, 1, MPI_INT, io_concentrators[ioc_start],
                              WRITE_DATA_DONE, sf_context->sf_data_comm, &sf_io_request->io_comp_req)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Irecv failed", mpi_code);

    /*
     * Start the actual data transfer using the ack received
     * from the IOC as the tag for the send
     */
    H5_CHECK_OVERFLOW(elements, int64_t, int);
    if (MPI_SUCCESS !=
        (mpi_code = MPI_Isend(data, (int)elements, MPI_BYTE, io_concentrators[ioc_start], data_tag,
                              sf_context->sf_data_comm, &sf_io_request->io_transfer_req)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Isend failed", mpi_code);

    /*
     * NOTE: When we actually have the async I/O support,
     * the request should be queued before we return to
     * the caller. Having queued the I/O operation, we
     * might want to get additional work started before
     * allowing the queued I/O requests to make further
     * progress and/or to complete, so we just return
     * to the caller.
     */

    *io_req = sf_io_request;

done:
    if (ret_value < 0) {
        if (ack_request != MPI_REQUEST_NULL) {
            if (MPI_SUCCESS != (mpi_code = MPI_Wait(&ack_request, MPI_STATUS_IGNORE)))
                H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Wait failed", mpi_code);
        }
        if (sf_io_request) {
            if (sf_io_request->io_transfer_req != MPI_REQUEST_NULL) {
                if (MPI_SUCCESS != (mpi_code = MPI_Wait(&sf_io_request->io_transfer_req, MPI_STATUS_IGNORE)))
                    H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Wait failed", mpi_code);
            }
            if (sf_io_request->io_comp_req != MPI_REQUEST_NULL) {
                if (MPI_SUCCESS != (mpi_code = MPI_Wait(&sf_io_request->io_comp_req, MPI_STATUS_IGNORE)))
                    H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Wait failed", mpi_code);
            }
        }

        free(sf_io_request);
        *io_req = NULL;
    }

    H5_SUBFILING_FUNC_LEAVE;
} /* end ioc__write_independent_async() */

/*-------------------------------------------------------------------------
 * Function:    Internal ioc__read_independent_async
 *
 * Purpose:     The IO operations can be striped across a selection of
 *              IO concentrators.  The read and write independent calls
 *              compute the group of 1 or more IOCs and further create
 *              derived MPI datatypes when required by the size of the
 *              contiguous read or write requests.
 *
 *              IOC(0) contains the logical data storage for file offset
 *              zero and all offsets that reside within modulo range of
 *              the subfiling stripe_size.
 *
 *              We cycle through all 'n_io_conentrators' and send a
 *              descriptor to each IOC that has a non-zero sized IO
 *              request to fulfill.
 *
 *              Sending descriptors to an IOC usually gets an ACK or
 *              NACK in response.  For the read operations, we post
 *              asynch READs to receive the file data and wait until
 *              all pending operations have completed.
 *
 * Return:      Non-negative on success/Negative on failure
 *
 *-------------------------------------------------------------------------
 */
herr_t
ioc__read_independent_async(int64_t context_id, int64_t offset, int64_t elements, void *data,
                            io_req_t **io_req)
{
    subfiling_context_t *sf_context    = NULL;
    MPI_Request          ack_request   = MPI_REQUEST_NULL;
    io_req_t            *sf_io_request = NULL;
    bool                 need_data_tag = false;
    int64_t              ioc_start;
    int64_t              ioc_offset;
    int64_t              ioc_subfile_idx;
    int64_t              msg[3]           = {0};
    int                 *io_concentrators = NULL;
    int                  num_io_concentrators;
    int                  num_subfiles;
    int                  data_tag = 0;
    int                  mpi_code;
    herr_t               ret_value = SUCCEED;

    assert(io_req);

    H5_CHECK_OVERFLOW(elements, int64_t, int);

    if (NULL == (sf_context = H5_get_subfiling_object(context_id)))
        H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "can't get subfiling context from ID");
    assert(sf_context->topology);
    assert(sf_context->topology->io_concentrators);

    io_concentrators     = sf_context->topology->io_concentrators;
    num_io_concentrators = sf_context->topology->n_io_concentrators;
    num_subfiles         = sf_context->sf_num_subfiles;

    /*
     * If we are using 1 subfile per IOC, we can optimize reads
     * a little since each read will go to a separate IOC and we
     * won't be in danger of data being received in an
     * unpredictable order. However, if some IOCs own more than
     * 1 subfile, we need to associate each read with a unique
     * message tag to make sure the data is received in the
     * correct order.
     */
    need_data_tag = num_subfiles != num_io_concentrators;
    if (!need_data_tag)
        data_tag = READ_INDEP_DATA;

    /*
     * Calculate the IOC that we'll send the I/O request to
     * and the offset within that IOC's subfile
     */
    calculate_target_ioc(offset, sf_context->sf_stripe_size, num_io_concentrators, num_subfiles, &ioc_start,
                         &ioc_offset, &ioc_subfile_idx);

    /*
     * Allocate the I/O request object that will
     * be returned to the caller
     */
    if (NULL == (sf_io_request = malloc(sizeof(io_req_t))))
        H5_SUBFILING_GOTO_ERROR(H5E_RESOURCE, H5E_READERROR, FAIL, "couldn't allocate I/O request");

    H5_CHECK_OVERFLOW(ioc_start, int64_t, int);
    sf_io_request->ioc             = (int)ioc_start;
    sf_io_request->context_id      = context_id;
    sf_io_request->offset          = offset;
    sf_io_request->elements        = elements;
    sf_io_request->data            = data;
    sf_io_request->io_transfer_req = MPI_REQUEST_NULL;
    sf_io_request->io_comp_req     = MPI_REQUEST_NULL;
    sf_io_request->io_comp_tag     = -1;

    if (need_data_tag) {
        /*
         * Post an early non-blocking receive for IOC to send an ACK
         * (or NACK) message with a data tag that we will use for
         * receiving data
         */
        if (MPI_SUCCESS != (mpi_code = MPI_Irecv(&data_tag, 1, MPI_INT, io_concentrators[ioc_start],
                                                 READ_INDEP_ACK, sf_context->sf_data_comm, &ack_request)))
            H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Irecv failed", mpi_code);

        /*
         * Prepare and send an I/O request to the IOC identified
         * by the file offset
         */
        msg[0] = elements;
        msg[1] = ioc_offset;
        msg[2] = ioc_subfile_idx;
        if (MPI_SUCCESS !=
            (mpi_code = MPI_Send(msg, 1, H5_subfiling_rpc_msg_type, io_concentrators[ioc_start], READ_INDEP,
                                 sf_context->sf_msg_comm)))
            H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Send failed", mpi_code);

        /* Wait to receive the data tag from the IOC */
        if (MPI_SUCCESS != (mpi_code = MPI_Wait(&ack_request, MPI_STATUS_IGNORE)))
            H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Wait failed", mpi_code);

        if (data_tag == 0)
            H5_SUBFILING_GOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "received NACK from IOC");
    }

    /*
     * Post a non-blocking receive for the data from the IOC
     * using the selected data tag (either the one received
     * from the IOC or the static READ_INDEP_DATA tag)
     */
    if (MPI_SUCCESS !=
        (mpi_code = MPI_Irecv(data, (int)elements, MPI_BYTE, io_concentrators[ioc_start], data_tag,
                              sf_context->sf_data_comm, &sf_io_request->io_transfer_req)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Irecv failed", mpi_code);

    if (!need_data_tag) {
        /*
         * Prepare and send an I/O request to the IOC identified
         * by the file offset
         */
        msg[0] = elements;
        msg[1] = ioc_offset;
        msg[2] = ioc_subfile_idx;
        if (MPI_SUCCESS !=
            (mpi_code = MPI_Send(msg, 1, H5_subfiling_rpc_msg_type, io_concentrators[ioc_start], READ_INDEP,
                                 sf_context->sf_msg_comm)))
            H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Send failed", mpi_code);
    }

    *io_req = sf_io_request;

done:
    if (ret_value < 0) {
        if (ack_request != MPI_REQUEST_NULL) {
            if (MPI_SUCCESS != (mpi_code = MPI_Wait(&ack_request, MPI_STATUS_IGNORE)))
                H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Wait failed", mpi_code);
        }
        if (sf_io_request) {
            if (sf_io_request->io_transfer_req != MPI_REQUEST_NULL) {
                if (MPI_SUCCESS != (mpi_code = MPI_Wait(&sf_io_request->io_transfer_req, MPI_STATUS_IGNORE)))
                    H5_SUBFILING_MPI_DONE_ERROR(FAIL, "MPI_Wait failed", mpi_code);
            }
        }

        free(sf_io_request);
        *io_req = NULL;
    }

    H5_SUBFILING_FUNC_LEAVE;
} /* end ioc__read_independent_async() */

/*-------------------------------------------------------------------------
 * Function:    ioc__async_completion
 *
 * Purpose:     IOC function to complete outstanding I/O requests.
 *              Currently just a wrapper around MPI_Waitall on the given
 *              MPI_Request array.
 *
 * Return:      Non-negative on success/Negative on failure
 *
 *-------------------------------------------------------------------------
 */
herr_t
ioc__async_completion(MPI_Request *mpi_reqs, size_t num_reqs)
{
    herr_t ret_value = SUCCEED;
    int    mpi_code;

    assert(mpi_reqs);

    H5_CHECK_OVERFLOW(num_reqs, size_t, int);

    /* Have to supppress gcc warnings regarding MPI_STATUSES_IGNORE
     * with MPICH (https://github.com/pmodels/mpich/issues/5687)
     */
    H5_GCC_DIAG_OFF("stringop-overflow")
    if (MPI_SUCCESS != (mpi_code = MPI_Waitall((int)num_reqs, mpi_reqs, MPI_STATUSES_IGNORE)))
        H5_SUBFILING_MPI_GOTO_ERROR(FAIL, "MPI_Waitall failed", mpi_code);
    H5_GCC_DIAG_ON("stringop-overflow")

done:
    H5_SUBFILING_FUNC_LEAVE;
}