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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#define H5S_PACKAGE /*suppress error about including H5Spkg */
#define H5G_PACKAGE /*suppress error about including H5Gpkg */
#include "H5private.h" /* Generic Functions */
#include "H5Dprivate.h" /* Dataset Functions */
#include "H5Eprivate.h" /* Error Handling */
#include "H5Gpkg.h" /* Group functions */
#include "H5Iprivate.h" /* ID Functions */
#include "H5MMprivate.h" /* Memory allocation */
#include "H5Oprivate.h" /* Object Headers */
#include "H5Spkg.h" /* Dataspace functions */
#include "H5TBprivate.h" /* Threaded, Balanced, Binary Trees */
#ifdef H5_HAVE_FPHDF5
#include "H5FPprivate.h" /* Flexible Parallel Functions */
/* Pablo mask */
#define PABLO_MASK H5FPclient_mask
/* Is the interface initialized? */
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
/* local functions */
static unsigned H5FP_gen_request_id(void);
static herr_t H5FP_update_file_cache(hid_t file_id, struct SAP_sync *sap_sync, uint8_t *msg);
/** Public Library (non-API) Functions **/
/*
* Function: H5FP_fill_fphdf5_struct
* Purpose: Nice function to fill in the H5O_fphdf5_t structure
* before transmission to the SAP.
* Return: Nothing: Doesn't fail after asserts pass.
* Programmer: Bill Wendling, 13. November, 2002
* Modifications:
*/
void
H5FP_fill_fphdf5_struct(H5O_fphdf5_t *fphdf5, uint8_t *oid, haddr_t header,
struct H5S_simple_t *sdim, H5T_t *dtype, time_t *mtime,
H5O_layout_t *layout, H5O_name_t *group, H5O_name_t *dataset,
struct H5P_genplist_t *plist)
{
/* check args */
assert(fphdf5);
assert(oid);
assert(sdim);
assert(dtype);
assert(layout);
assert(plist);
HDmemcpy(fphdf5->oid, oid, sizeof(fphdf5->oid));
fphdf5->header = header;
fphdf5->layout = layout;
fphdf5->sdim = sdim;
fphdf5->mtime = mtime;
fphdf5->group = group;
fphdf5->dset = dataset;
fphdf5->dtype = dtype;
fphdf5->plist = plist;
}
/*
* Function: H5FP_request_open
* Purpose: Request an open of a file from the SAP. You pass in the
* metadata string (MDATA) (the filename), it's length in
* (MD_LEN), and the type of the object you're trying to
* open (OBJ_TYPE). The request ID is returned in a pointer
* supplied by the user.
*
* The so-called "captain" process is in charge of telling
* the SAP that the processes opened a file. All processes
* opening the file, though, should call this function so
* that they can get the file ID that the SAP assigns to it.
*
* N.B. This could be expanded to handle the opening of more
* than just a file, if that becomes necessary. Right now,
* we are only keeping track of file opens.
*
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 28. August, 2002
* Modifications:
*/
herr_t
H5FP_request_open(const char *mdata, int md_len, enum sap_obj_type obj_type,
unsigned *file_id, unsigned *req_id)
{
struct SAP_request req;
MPI_Status mpi_status;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_open, FAIL);
/* check args */
assert(mdata);
assert(file_id);
assert(req_id);
HDmemset(&mpi_status, 0, sizeof(MPI_Status));
if (H5FP_my_rank == H5FP_capt_rank) {
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_OPEN;
req.req_id = H5FP_gen_request_id();
req.proc_rank = H5FP_my_rank;
req.md_len = md_len;
req.obj_type = obj_type;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
if (H5FP_send_metadata(mdata, md_len, (int)H5FP_sap_rank))
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTSENDMDATA, FAIL,
"can't send metadata to server");
}
if ((mrc = MPI_Recv(file_id, 1, MPI_UNSIGNED, (int)H5FP_sap_rank,
H5FP_TAG_FILE_ID, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
printf("%u: New File ID == %u\n", H5FP_my_rank, *file_id);
fflush(stdout);
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_lock
* Purpose: Request a lock on an object in a file from the SAP. The
* request ID is returned in a pointer supplied by the user.
* The status of the SAP is returned to the user in the
* supplied STATUS pointer.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
herr_t
H5FP_request_lock(unsigned int sap_file_id, unsigned char *obj_oid,
enum sap_lock_type rw_lock, int last, unsigned *req_id,
enum sap_status *status)
{
struct SAP_request req;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_lock, FAIL);
assert(obj_oid);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = last ? H5FP_REQ_LOCK_END : H5FP_REQ_LOCK;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.rw_lock = rw_lock;
req.md_len = 0;
req.proc_rank = H5FP_my_rank;
H5FP_COPY_OID(req.oid, obj_oid);
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
if (last) {
/*
* On the last lock in the lock-group to be acquired, we expect a
* reply from the SAP
*/
struct SAP_reply sap_reply;
MPI_Status mpi_status;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_reply, 1, SAP_reply_t, (int)H5FP_sap_rank,
H5FP_TAG_REPLY, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
*status = sap_reply.status;
if (sap_reply.status != H5FP_STATUS_LOCK_ACQUIRED)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTLOCK, FAIL, "can't lock object on server");
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_release_lock
* Purpose: Release a lock on the file from the SAP. Request a lock
* on an object in a file from the SAP. The request ID is
* returned in a pointer supplied by the user. The status
* of the SAP is returned to the user in the supplied STATUS
* pointer.
* Return: Success: The request ID.
* Failure: -1
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
herr_t
H5FP_request_release_lock(unsigned int sap_file_id, unsigned char *obj_oid,
int last, unsigned *req_id, enum sap_status *status)
{
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_release_lock, FAIL);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = last ? H5FP_REQ_RELEASE_END : H5FP_REQ_RELEASE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.md_len = 0;
req.proc_rank = H5FP_my_rank;
if (obj_oid)
H5FP_COPY_OID(req.oid, obj_oid);
else
HDmemset(req.oid, '\0', sizeof(req.oid));
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
if (last) {
/*
* On the last lock released in this lock-group, we expect a
* reply from the SAP
*/
struct SAP_reply sap_reply;
MPI_Status mpi_status;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_reply, 1, SAP_reply_t, (int)H5FP_sap_rank,
H5FP_TAG_REPLY, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
*status = sap_reply.status;
if (sap_reply.status != H5FP_STATUS_LOCK_RELEASED)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTUNLOCK, FAIL, "can't unlock object on server");
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_change
* Purpose: Tell the SAP that we want to change the structure of the file.
* Include the information the SAP will need to send to the
* other processes so that they can be synced with what you
* are doing. The request ID is returned in a pointer
* supplied by the user.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_change(unsigned int sap_file_id, unsigned char *obj_oid,
enum sap_obj_type obj_type, enum sap_action action,
int mdata_len, const char *mdata, unsigned *req_id,
enum sap_status *status)
{
struct SAP_reply sap_reply;
MPI_Status mpi_status;
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_change, FAIL);
assert(mdata);
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_CHANGE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.obj_type = obj_type;
req.action = action;
req.md_len = mdata_len;
req.proc_rank = H5FP_my_rank;
if (obj_oid)
H5FP_COPY_OID(req.oid, obj_oid);
else
HDmemset(req.oid, '\0', sizeof(req.oid));
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
/* The first MPI_Send will have been sent before this one will be read. */
if (H5FP_send_metadata(mdata, mdata_len, (int)H5FP_sap_rank) != SUCCEED)
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTSENDMDATA, FAIL, "can't send metadata to server");
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_reply, 1, SAP_reply_t, (int)H5FP_sap_rank,
H5FP_TAG_REPLY, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
*status = sap_reply.status;
if (sap_reply.status != H5FP_STATUS_OK)
HGOTO_ERROR(H5E_RESOURCE, H5E_CANTUNLOCK, FAIL, "can't register change with server");
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
#if 0
herr_t
H5FP_generate_message(fid_t fid, const char *dataset, const char *group,
H5D_t *dset, H5S_t *space, H5O_fphdf5_t *fphdf5 /* out */)
{
hobj_ref_t gr_ref, ds_ref;
H5O_efl_t efl;
H5F_t *file = NULL;
H5S_t *space = NULL;
H5G_entry_t *ent = NULL;
int i;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5FP_generate_message, FAIL);
if ((file = H5I_object(file_id)) == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier");
if ((grp = H5G_open(file, group)) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group");
if ((ent = H5G_entof(grp)) == NULL)
/* this will never be executed */
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to get entry info of group");
memcpy(fphdf5->oid, (void *)&ent->header, sizeof(ent->header));
if ((loc = H5G_loc(did)) == NULL) {
exit(1);
}
memcpy(ds_ref.oid, (void *)&loc->header, sizeof(loc->header));
memcpy(fphdf5.oid, ds_ref.oid, sizeof(ds_ref.oid));
fphdf5->header = dset->ent.header;
fphdf5->layout = &dset->layout;
fphdf5->sdim = &(space->extent.u.simple);
#if 0
fphdf5->mtime = ;
#endif
fphdf5->group = group;
fphdf5->dset = dataset;
fphdf5->dtype = dset->type;
if ((fphdf5->plist = H5P_object_verify(dset->dcpl_id,
H5P_DATASET_CREATE)) == NULL) {
exit(1);
}
if (H5P_get(fphdf5->plist, H5D_CRT_EXT_FILE_LIST_NAME, &efl) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get external file list");
fphdf5->efl = &efl;
done:
FUNC_LEAVE(ret_value);
}
#endif
/*
* Function: H5FP_request_sync
* Purpose: Tell the SAP that we want all of the structural changes
* made on the file that we don't know about. The request ID
* is returned in a pointer supplied by the user. The status
* of the SAP is returned to the user in the supplied STATUS
* pointer.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_sync(unsigned int sap_file_id, hid_t hdf_file_id,
unsigned *req_id, enum sap_status *status)
{
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_sync, FAIL);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = H5FP_REQ_SYNC;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.proc_rank = H5FP_my_rank;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
for (;;) {
MPI_Status mpi_status;
struct SAP_sync sap_sync;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_sync, 1, SAP_sync_t, (int)H5FP_sap_rank, H5FP_TAG_SYNC,
H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
if (sap_sync.status != H5FP_STATUS_OK) {
*status = sap_sync.status;
HGOTO_DONE(FAIL);
}
/*
* use the info in the SAP_sync_t structure to update the
* metadata
*/
if (sap_sync.md_len) {
uint8_t *buf;
if ((buf = (uint8_t *)HDcalloc((size_t)sap_sync.md_len + 1, 1)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "out of memory");
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(buf, sap_sync.md_len, MPI_BYTE, (int)H5FP_sap_rank,
H5FP_TAG_METADATA, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS) {
HDfree(buf);
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
}
/*
* FIXME: perform whatever metadata updates we can with the
* metadata returned from the SAP
*/
if (H5FP_update_file_cache(hdf_file_id, &sap_sync, buf) != SUCCEED)
HGOTO_DONE(FAIL);
HDfree(buf);
}
if (sap_sync.last_msg)
break;
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_close
* Purpose: Tell the SAP that we want all of the structural changes
* made on the file and then close the file. The request ID
* is returned in a pointer passed to the function by the
* user.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_close(unsigned sap_file_id, unsigned *req_id)
{
struct SAP_request req;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_close, FAIL);
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_CLOSE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.proc_rank = H5FP_my_rank;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
*req_id = req.req_id;
done:
FUNC_LEAVE(ret_value);
}
/** Private Functions **/
/*
* Function: H5FP_gen_request_id
* Purpose: Generate a unique request ID to send along with a
* message.
* Return: Integer >= 0 - Doesn't fail.
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
static unsigned
H5FP_gen_request_id()
{
static unsigned int i = 0;
FUNC_ENTER_NOINIT(H5FP_gen_request_id);
FUNC_LEAVE(i++);
}
/*
* Function: H5FP_update_file_cache
* Purpose: Take the information returned by a "sync" call and update
* the file cache. The MSG parameter should be an encoded
* version of the H5O_fphdf5_t object.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 16. December, 2002
* Modifications:
*/
static herr_t
H5FP_update_file_cache(hid_t file_id, struct SAP_sync *sap_sync, uint8_t *msg)
{
herr_t ret_value = SUCCEED;
H5G_entry_t *ent = NULL, *file_ent = NULL;
H5O_fphdf5_t *fmeta = NULL;
H5S_t *space = NULL;
H5F_t *file = NULL;
H5G_t *grp = NULL;
H5D_t *dset = NULL;
FUNC_ENTER_NOINIT(H5FP_update_file_cache);
/* check args */
assert(sap_sync);
assert(msg);
if ((file = H5I_object(file_id)) == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier");
if ((fmeta = H5O_FPHDF5[0].decode(file, msg, NULL)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "out of memory");
if ((file_ent = H5G_loc(file_id)) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group");
if ((grp = H5G_open(file_ent, fmeta->group->s)) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group");
switch (sap_sync->action) {
#ifdef OLD_WAY
case H5FP_ACT_CREATE:
if (sap_sync->obj_type == H5FP_OBJ_DATASET) {
H5O_efl_t efl;
if ((ent = H5MM_malloc(sizeof(H5G_entry_t))) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "out of memory");
if ((space = H5S_create(H5S_SIMPLE)) == NULL)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTCREATE, FAIL,
"can't create simple dataspace");
if (H5S_set_extent_simple(space, fmeta->sdim->rank,
fmeta->sdim->size, fmeta->sdim->max) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't set dimensions");
if (H5D_update_entry_info(file, ent, H5G_entof(grp),
fmeta->dset->s, space,
fmeta->plist, fmeta->layout, fmeta->dtype,
FALSE, fmeta->header) == FAIL)
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTINIT, FAIL, "can't update metadata cache");
if (H5P_get(fmeta->plist, H5D_CRT_EXT_FILE_LIST_NAME, &efl) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get external file list");
if (H5D_update_external_storage_info(file, ent, &efl, fmeta->layout) == FAIL)
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTINIT, FAIL,
"can't update external file layout metadata cache");
}
break;
case H5FP_ACT_EXTEND:
if (sap_sync->obj_type == H5FP_OBJ_DATASET) {
if ((dset = H5D_open(H5G_entof(grp), fmeta->dset->s)) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open dataset");
if (H5D_extend(dset, fmeta->sdim->size) != SUCCEED)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to extend dataset");
}
break;
#endif /* OLD_WAY */
case H5FP_ACT_DELETE:
default:
break;
}
done:
/* cleanup */
if (fmeta)
H5O_FPHDF5[0].free(fmeta);
if (dset)
H5D_close(dset);
if (grp)
H5G_close(grp);
if (space)
H5S_close(space);
if (ret_value == FAIL)
H5MM_xfree(ent);
FUNC_LEAVE(ret_value);
}
#endif /* H5_HAVE_FPHDF5 */
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