1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#define H5S_PACKAGE /*suppress error about including H5Spkg */
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error Handling */
#include "H5Oprivate.h" /* Object Headers */
#include "H5Spkg.h" /* Dataspace functions */
#include "H5TBprivate.h" /* Threaded, Balanced, Binary Trees */
#ifdef H5_HAVE_FPHDF5
#include "H5FPprivate.h" /* Flexible Parallel Functions */
/* Pablo mask */
#define PABLO_MASK H5FPclient_mask
/* Is the interface initialized? */
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
/* local functions */
static unsigned int H5FP_gen_request_id(void);
static herr_t H5FP_update_metadata_cache(hid_t file_id, struct SAP_sync *sap_sync,
H5O_fphdf5_t *fmeta);
/** Public Library (non-API) Functions **/
/*
* Function: H5FP_request_open
* Purpose: Request an open of an object from the SAP. You pass in
* the metadata string (MDATA) (this is normally the
* filename or pathname to the object), it's length in
* (MD_LEN), and the type of the object you're trying to
* open (OBJ_TYPE). The request ID is returned in a pointer
* supplied by the user.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 28. August, 2002
* Modifications:
*/
/* FIXME: This seems to be only related to opening a file, not an object, contrary to the comments above... -QAK */
herr_t
H5FP_request_open(const char *mdata, int md_len, enum sap_obj_type obj_type,
unsigned *file_id, unsigned *req_id)
{
struct SAP_request req;
MPI_Status mpi_status;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_open, FAIL);
assert(mdata);
assert(file_id);
assert(req_id);
HDmemset(&mpi_status, 0, sizeof(MPI_Status));
if (H5FP_my_rank == H5FP_capt_rank) {
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_OPEN;
req.req_id = H5FP_gen_request_id();
req.proc_rank = H5FP_my_rank;
req.md_len = md_len;
req.obj_type = obj_type;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
/* The first MPI_Send will have been sent before this one will be read. */
if (H5FP_send_metadata(mdata, md_len, (int)H5FP_sap_rank))
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTSENDMDATA, FAIL, "can't send metadata to server");
}
if ((mrc = MPI_Recv(file_id, 1, MPI_UNSIGNED, (int)H5FP_sap_rank,
H5FP_TAG_FILE_ID, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
printf("%u: New File ID == %u\n", H5FP_my_rank, *file_id);
fflush(stdout);
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_lock
* Purpose: Request a lock on an object in a file from the SAP. The
* request ID is returned in a pointer supplied by the user.
* The status of the SAP is returned to the user in the
* supplied STATUS pointer.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
herr_t
H5FP_request_lock(unsigned int sap_file_id, unsigned char *obj_oid,
enum sap_lock_type rw_lock, int last, unsigned *req_id,
enum sap_status *status)
{
struct SAP_request req;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_lock, FAIL);
assert(obj_oid);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = last ? H5FP_REQ_LOCK_END : H5FP_REQ_LOCK;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.rw_lock = rw_lock;
req.md_len = 0;
req.proc_rank = H5FP_my_rank;
H5FP_COPY_OID(req.oid, obj_oid);
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
if (last) {
/*
* On the last lock in the lock-group to be acquired, we expect a
* reply from the SAP
*/
struct SAP_reply sap_reply;
MPI_Status mpi_status;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_reply, 1, SAP_reply_t, (int)H5FP_sap_rank,
H5FP_TAG_REPLY, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
*status = sap_reply.status;
if (sap_reply.status != H5FP_STATUS_LOCK_ACQUIRED)
/* FIXME: Shouldn't this issue an error also? - QAK */
HGOTO_DONE(FAIL);
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_release_lock
* Purpose: Release a lock on the file from the SAP. Request a lock
* on an object in a file from the SAP. The request ID is
* returned in a pointer supplied by the user. The status
* of the SAP is returned to the user in the supplied STATUS
* pointer.
* Return: Success: The request ID.
* Failure: -1
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
herr_t
H5FP_request_release_lock(unsigned int sap_file_id, unsigned char *obj_oid,
int last, unsigned *req_id, enum sap_status *status)
{
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_release_lock, FAIL);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = last ? H5FP_REQ_RELEASE_END : H5FP_REQ_RELEASE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.md_len = 0;
req.proc_rank = H5FP_my_rank;
if (obj_oid)
H5FP_COPY_OID(req.oid, obj_oid);
else
HDmemset(req.oid, '\0', sizeof(req.oid));
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
if (last) {
/*
* On the last lock released in this lock-group, we expect a
* reply from the SAP
*/
struct SAP_reply sap_reply;
MPI_Status mpi_status;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_reply, 1, SAP_reply_t, (int)H5FP_sap_rank,
H5FP_TAG_REPLY, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
*status = sap_reply.status;
if (sap_reply.status != H5FP_STATUS_LOCK_RELEASED) {
HDfprintf(stderr, "Release: For some reason, we couldn't release the lock\n");
HDfprintf(stderr, "Release: reply status == %d\n", sap_reply.status);
HGOTO_DONE(FAIL);
}
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_change
* Purpose: Tell the SAP that we want to change the structure of the file.
* Include the information the SAP will need to send to the
* other processes so that they can be synced with what you
* are doing. The request ID is returned in a pointer
* supplied by the user.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_change(unsigned int sap_file_id, enum sap_obj_type obj_type,
enum sap_action action, int mdata_len, const char *mdata,
unsigned *req_id)
{
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_change, FAIL);
assert(mdata);
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_CHANGE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.obj_type = obj_type;
req.action = action;
req.md_len = mdata_len;
req.proc_rank = H5FP_my_rank;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
/* The first MPI_Send will have been sent before this one will be read. */
if (H5FP_send_metadata(mdata, mdata_len, (int)H5FP_sap_rank) != SUCCEED)
HGOTO_ERROR(H5E_FPHDF5, H5E_CANTSENDMDATA, FAIL, "can't send metadata to server");
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_sync
* Purpose: Tell the SAP that we want all of the structural changes
* made on the file that we don't know about. The request ID
* is returned in a pointer supplied by the user. The status
* of the SAP is returned to the user in the supplied STATUS
* pointer.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_sync(unsigned int sap_file_id, hid_t hdf_file_id,
unsigned *req_id, enum sap_status *status)
{
struct SAP_request req;
herr_t ret_value = SUCCEED;
int mrc;
FUNC_ENTER_NOAPI(H5FP_request_sync, FAIL);
assert(req_id);
assert(status);
HDmemset(&req, 0, sizeof(req));
*status = H5FP_STATUS_OK;
req.req_type = H5FP_REQ_SYNC;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.proc_rank = H5FP_my_rank;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
for (;;) {
MPI_Status mpi_status;
struct SAP_sync sap_sync;
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(&sap_sync, 1, SAP_sync_t, (int)H5FP_sap_rank, H5FP_TAG_SYNC,
H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
if (sap_sync.status != H5FP_STATUS_OK) {
*status = sap_sync.status;
HGOTO_DONE(FAIL);
}
if (sap_sync.last_msg)
break;
/* use the info in the SAP_sync_t structure to update the
* metadata */
if (sap_sync.md_len) {
H5O_fphdf5_t *fmeta;
char *buf;
if ((buf = (char *)HDcalloc((size_t)sap_sync.md_len + 1, 1)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "out of memory");
HDmemset(&mpi_status, 0, sizeof(mpi_status));
if ((mrc = MPI_Recv(buf, sap_sync.md_len, MPI_BYTE, (int)H5FP_sap_rank,
H5FP_TAG_METADATA, H5FP_SAP_COMM, &mpi_status)) != MPI_SUCCESS) {
HDfree(buf);
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mrc);
}
/*
* FIXME: perform whatever metadata updates we can with the
* metadata returned from the SAP
*/
fmeta = H5O_FPHDF5[0].decode(NULL, buf, NULL);
HDfree(buf);
if (H5FP_update_metadata_cache(hdf_file_id, &sap_sync, fmeta) != SUCCEED) {
H5O_FPHDF5[0].free(fmeta);
HGOTO_DONE(FAIL);
}
H5O_FPHDF5[0].free(fmeta);
}
}
done:
*req_id = req.req_id;
FUNC_LEAVE(ret_value);
}
#if 0
struct SAP_sync {
unsigned int req_id; /* Request ID copied from the SAP_request */
unsigned int sync_id; /* Sync ID to order the sync messages */
unsigned int sap_file_id; /* SAP's file ID for the specific file */
unsigned int last_msg; /* Indicates this is the last sync msg sent */
int md_len; /* Length of the metadata sent in next msg */
enum sap_obj_type obj_type; /* Type of object */
enum sap_action action; /* Action done on the object */
enum sap_status status; /* Status of the request */
};
typedef struct H5O_fphdf5_t {
uint8_t oid[H5R_OBJ_REF_BUF_SIZE]; /* OID of object */
struct H5S_simple_t *sdim; /* Simple dimensionality structure */
H5T_t *dtype; /* Datatype structure */
time_t *mtime; /* Modification time */
H5O_name_t *group; /* Group name */
H5O_name_t *dset; /* Dataset name */
struct H5P_genplist_t *plist; /* Pathname of the object */
} H5O_fphdf5_t;
#endif
static herr_t
H5FP_update_metadata_cache(hid_t file_id, struct SAP_sync *sap_sync, H5O_fphdf5_t *fmeta)
{
herr_t ret_value = SUCCEED;
hid_t gid, dset_id;
FUNC_ENTER_NOINIT(H5FP_update_metadata_cache);
/* check args */
assert(sap_sync);
assert(fmeta);
switch (sap_sync->action) {
case H5FP_ACT_CREATE:
case H5FP_ACT_EXTEND:
if (sap_sync->obj_type == H5FP_OBJ_DATASET) {
/* FIXME: These shouldn't be calling API functions. -QAK */
gid = H5Gopen(file_id, fmeta->group->s);
dset_id = H5Dopen(gid, fmeta->dset->s);
if (H5Dextend(dset_id, fmeta->sdim->size) != SUCCEED)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "metadata update failed");
}
break;
case H5FP_ACT_DELETE:
default:
break;
}
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5FP_request_close
* Purpose: Tell the SAP that we want all of the structural changes
* made on the file and then close the file. The request ID
* is returned in a pointer passed to the function by the
* user.
* Return: Success: SUCCEED
* Failure: FAIL
* Programmer: Bill Wendling, 02. August, 2002
* Modifications:
*/
herr_t
H5FP_request_close(unsigned sap_file_id, unsigned *req_id)
{
struct SAP_request req;
int ret_value = SUCCEED, mrc;
FUNC_ENTER_NOAPI(H5FP_request_close, FAIL);
HDmemset(&req, 0, sizeof(req));
req.req_type = H5FP_REQ_CLOSE;
req.req_id = H5FP_gen_request_id();
req.sap_file_id = sap_file_id;
req.proc_rank = H5FP_my_rank;
if ((mrc = MPI_Send(&req, 1, SAP_request_t, (int)H5FP_sap_rank,
H5FP_TAG_REQUEST, H5FP_SAP_COMM)) != MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mrc);
*req_id = req.req_id;
done:
FUNC_LEAVE(ret_value);
}
/** Private Functions **/
/*
* Function: H5FP_gen_request_id
* Purpose: Generate a unique request ID to send along with a
* message.
* Return: Integer >= 0 - Doesn't fail.
* Programmer: Bill Wendling, 30. July, 2002
* Modifications:
*/
static unsigned int H5FP_gen_request_id()
{
static unsigned int i = 0;
FUNC_ENTER_NOINIT(H5FP_gen_request_id);
FUNC_LEAVE(i++);
}
#endif /* H5_HAVE_FPHDF5 */
|