1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/****************/
/* Module Setup */
/****************/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5G_PACKAGE /*suppress error about including H5Gpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5FDprivate.h" /* File drivers */
#include "H5FLprivate.h" /* Free Lists */
#include "H5Gpkg.h" /* Groups */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
#include "H5SMprivate.h" /* Shared Object Header Messages */
/****************/
/* Local Macros */
/****************/
/* Maximum size of super-block buffers */
#define H5F_MAX_SUPERBLOCK_SIZE 134
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/* Metadata cache (H5AC) callbacks */
static H5F_super_t *H5F_sblock_load(H5F_t *f, hid_t dxpl_id, haddr_t addr, void *udata);
static herr_t H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t addr, H5F_super_t *sblock);
static herr_t H5F_sblock_dest(H5F_t *f, H5F_super_t * sblock);
static herr_t H5F_sblock_clear(H5F_t *f, H5F_super_t *sblock, hbool_t destroy);
static herr_t H5F_sblock_size(const H5F_t *f, const H5F_super_t *sblock, size_t *size_ptr);
/*********************/
/* Package Variables */
/*********************/
/* H5F inherits cache-like properties from H5AC */
const H5AC_class_t H5AC_SUPERBLOCK[1] = {{
H5AC_SUPERBLOCK_ID,
(H5AC_load_func_t)H5F_sblock_load,
(H5AC_flush_func_t)H5F_sblock_flush,
(H5AC_dest_func_t)H5F_sblock_dest,
(H5AC_clear_func_t)H5F_sblock_clear,
(H5AC_size_func_t)H5F_sblock_size,
}};
/*****************************/
/* Library Private Variables */
/*****************************/
/* Declare extern the free list to manage the H5F_super_t struct */
H5FL_EXTERN(H5F_super_t);
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5F_sblock_load
*
* Purpose: Loads the superblock from the file, and deserializes
* its information into the H5F_super_t structure.
*
* Return: Success: SUCCEED
* Failure: NULL
*
* Programmer: Mike McGreevy
* mamcgree@hdfgroup.org
* April 8, 2009
*
*-------------------------------------------------------------------------
*/
static H5F_super_t *
H5F_sblock_load(H5F_t *f, hid_t dxpl_id, haddr_t UNUSED addr, void *_udata)
{
H5F_super_t *sblock = NULL; /* File's superblock */
haddr_t base_addr = HADDR_UNDEF; /* Base address of file */
uint8_t sbuf[H5F_MAX_SUPERBLOCK_SIZE]; /* Buffer for superblock */
H5P_genplist_t *c_plist; /* File creation property list */
H5F_file_t *shared; /* shared part of `file' */
H5FD_t *lf; /* file driver part of `shared' */
haddr_t stored_eoa; /*relative end-of-addr in file */
haddr_t eof; /*end of file address */
uint8_t sizeof_addr; /* Size of offsets in the file (in bytes) */
uint8_t sizeof_size; /* Size of lengths in the file (in bytes) */
const size_t fixed_size = H5F_SUPERBLOCK_FIXED_SIZE; /*fixed sizeof superblock */
size_t variable_size; /*variable sizeof superblock */
uint8_t *p; /* Temporary pointer into encoding buffer */
unsigned super_vers; /* Superblock version */
hbool_t *dirtied = (hbool_t *)_udata; /* Set up dirtied out value */
H5F_super_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
HDassert(f);
HDassert(H5F_addr_eq(addr, 0));
HDassert(dirtied);
/* Short cuts */
shared = f->shared;
lf = shared->lf;
/* Get the shared file creation property list */
if(NULL == (c_plist = (H5P_genplist_t *)H5I_object(shared->fcpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, NULL, "can't get property list")
/* Get the base address for the file in the VFD */
if(HADDR_UNDEF == (base_addr = H5FD_get_base_addr(lf)))
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "failed to get base address for file driver")
/* Allocate space for the superblock */
if(NULL == (sblock = H5FL_CALLOC(H5F_super_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
/* Read fixed-size portion of the superblock */
p = sbuf;
H5_CHECK_OVERFLOW(fixed_size, size_t, haddr_t);
if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)fixed_size) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed")
if(H5FD_read(lf, dxpl_id, H5FD_MEM_SUPER, (haddr_t)0, fixed_size, p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_READERROR, NULL, "unable to read superblock")
/* Skip over signature (already checked when locating the superblock) */
p += H5F_SIGNATURE_LEN;
/* Superblock version */
super_vers = *p++;
if(super_vers > HDF5_SUPERBLOCK_VERSION_LATEST)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad superblock version number")
if(H5P_set(c_plist, H5F_CRT_SUPER_VERS_NAME, &super_vers) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set superblock version")
/* Record the superblock version */
sblock->super_vers = super_vers;
/* Sanity check */
HDassert(((size_t)(p - sbuf)) == fixed_size);
/* Determine the size of the variable-length part of the superblock */
variable_size = (size_t)H5F_SUPERBLOCK_VARLEN_SIZE(super_vers, f);
HDassert(variable_size > 0);
HDassert(fixed_size + variable_size <= sizeof(sbuf));
/* Read in variable-sized portion of superblock */
if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, (haddr_t)(fixed_size + variable_size)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed")
if(H5FD_read(lf, dxpl_id, H5FD_MEM_SUPER, (haddr_t)fixed_size, variable_size, p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read superblock")
/* Check for older version of superblock format */
if(super_vers < HDF5_SUPERBLOCK_VERSION_2) {
uint32_t status_flags; /* File status flags */
unsigned btree_k[H5B_NUM_BTREE_ID]; /* B-tree internal node 'K' values */
unsigned sym_leaf_k; /* Symbol table leaf node's 'K' value */
/* Freespace version (hard-wired) */
if(HDF5_FREESPACE_VERSION != *p++)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad free space version number")
/* Root group version number (hard-wired) */
if(HDF5_OBJECTDIR_VERSION != *p++)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad object directory version number")
/* Skip over reserved byte */
p++;
/* Shared header version number (hard-wired) */
if(HDF5_SHAREDHEADER_VERSION != *p++)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad shared-header format version number")
/* Size of file addresses */
sizeof_addr = *p++;
if(sizeof_addr != 2 && sizeof_addr != 4 &&
sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number in an address")
if(H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &sizeof_addr) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number in an address")
shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */
/* Size of file sizes */
sizeof_size = *p++;
if(sizeof_size != 2 && sizeof_size != 4 &&
sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number for object size")
if(H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number for object size")
shared->sizeof_size = sizeof_size; /* Keep a local copy also */
/* Skip over reserved byte */
p++;
/* Various B-tree sizes */
UINT16DECODE(p, sym_leaf_k);
if(sym_leaf_k == 0)
HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad symbol table leaf node 1/2 rank")
if(H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &sym_leaf_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for symbol table leaf nodes")
sblock->sym_leaf_k = sym_leaf_k; /* Keep a local copy also */
/* Need 'get' call to set other array values */
if(H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes")
UINT16DECODE(p, btree_k[H5B_SNODE_ID]);
if(btree_k[H5B_SNODE_ID] == 0)
HGOTO_ERROR(H5E_FILE, H5E_BADRANGE, NULL, "bad 1/2 rank for btree internal nodes")
/*
* Delay setting the value in the property list until we've checked
* for the indexed storage B-tree internal 'K' value later.
*/
/* File status flags (not really used yet) */
UINT32DECODE(p, status_flags);
HDassert(status_flags <= 255);
sblock->status_flags = (uint8_t)status_flags;
if(sblock->status_flags & ~H5F_SUPER_ALL_FLAGS)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad flag value for superblock")
/*
* If the superblock version # is greater than 0, read in the indexed
* storage B-tree internal 'K' value
*/
if(super_vers > HDF5_SUPERBLOCK_VERSION_DEF) {
UINT16DECODE(p, btree_k[H5B_CHUNK_ID]);
/* Reserved bytes are present only in version 1 */
if(super_vers == HDF5_SUPERBLOCK_VERSION_1)
p += 2; /* reserved */
} /* end if */
else
btree_k[H5B_CHUNK_ID] = HDF5_BTREE_CHUNK_IK_DEF;
/* Set the B-tree internal node values, etc */
if(H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btree_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for btree internal nodes")
HDmemcpy(sblock->btree_k, btree_k, sizeof(unsigned) * (size_t)H5B_NUM_BTREE_ID); /* Keep a local copy also */
/* Remainder of "variable-sized" portion of superblock */
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->base_addr/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->ext_addr/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->driver_addr/*out*/);
/* Allocate space for the root group symbol table entry */
HDassert(!sblock->root_ent);
if(NULL == (sblock->root_ent = (H5G_entry_t *)H5MM_calloc(sizeof(H5G_entry_t))))
HGOTO_ERROR(H5E_FILE, H5E_CANTALLOC, NULL, "can't allocate space for root group symbol table entry")
/* decode the root group symbol table entry */
if(H5G_ent_decode(f, (const uint8_t **)&p, sblock->root_ent) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTDECODE, NULL, "can't decode root group symbol table entry")
/* Set the root group address to the correct value */
sblock->root_addr = sblock->root_ent->header;
/*
* Check if superblock address is different from base address and
* adjust base address and "end of address" address if so.
*/
if(!H5F_addr_eq(base_addr, sblock->base_addr)) {
/* Check if the superblock moved earlier in the file */
if(H5F_addr_lt(base_addr, sblock->base_addr))
stored_eoa -= (sblock->base_addr - base_addr);
else
/* The superblock moved later in the file */
stored_eoa += (base_addr - sblock->base_addr);
/* Adjust base address for offsets of the HDF5 data in the file */
sblock->base_addr = base_addr;
/* Set the base address for the file in the VFD now */
if(H5FD_set_base_addr(lf, sblock->base_addr) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "failed to set base address for file driver")
/* Indicate that the superblock should be marked dirty */
*dirtied = TRUE;
} /* end if */
/* This step is for h5repart tool only. If user wants to change file driver
* from family to sec2 while using h5repart, set the driver address to
* undefined to let the library ignore the family driver information saved
* in the superblock.
*/
if(H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) {
/* Eliminate the driver info */
sblock->driver_addr = HADDR_UNDEF;
/* Indicate that the superblock should be marked dirty */
*dirtied = TRUE;
} /* end if */
/* Decode the optional driver information block */
if(H5F_addr_defined(sblock->driver_addr)) {
uint8_t dbuf[H5F_MAX_DRVINFOBLOCK_SIZE]; /* Buffer for driver info block */
char drv_name[9]; /* Name of driver */
unsigned drv_vers; /* Version of driver info block */
size_t drv_variable_size; /* Size of variable-length portion of driver info block, in bytes */
/* Read in fixed-sized portion of driver info block */
p = dbuf;
if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed")
if(H5FD_read(lf, dxpl_id, H5FD_MEM_SUPER, sblock->driver_addr, (size_t)H5F_DRVINFOBLOCK_HDR_SIZE, p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read driver information block")
/* Version number */
drv_vers = *p++;
if(drv_vers != HDF5_DRIVERINFO_VERSION_0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "bad driver information block version number")
p += 3; /* reserved bytes */
/* Driver info size */
UINT32DECODE(p, drv_variable_size);
/* Sanity check */
HDassert(H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size <= sizeof(dbuf));
/* Driver name and/or version */
HDstrncpy(drv_name, (const char *)p, (size_t)8);
drv_name[8] = '\0';
p += 8; /* advance past name/version */
/* Check if driver matches driver information saved. Unfortunately, we can't push this
* function to each specific driver because we're checking if the driver is correct.
*/
if(!HDstrncmp(drv_name, "NCSAfami", (size_t)8) && HDstrcmp(lf->cls->name, "family"))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "family driver should be used")
if(!HDstrncmp(drv_name, "NCSAmult", (size_t)8) && HDstrcmp(lf->cls->name, "multi"))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "multi driver should be used")
/* Read in variable-sized portion of driver info block */
if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE + drv_variable_size) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, NULL, "set end of space allocation request failed")
if(H5FD_read(lf, dxpl_id, H5FD_MEM_SUPER, sblock->driver_addr + H5F_DRVINFOBLOCK_HDR_SIZE, drv_variable_size, p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read file driver information")
/* Decode driver information */
if(H5FD_sb_decode(lf, drv_name, p) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to decode driver information")
} /* end if */
} /* end if */
else {
uint32_t computed_chksum; /* Computed checksum */
uint32_t read_chksum; /* Checksum read from file */
/* Size of file addresses */
sizeof_addr = *p++;
if(sizeof_addr != 2 && sizeof_addr != 4 &&
sizeof_addr != 8 && sizeof_addr != 16 && sizeof_addr != 32)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number in an address")
if(H5P_set(c_plist, H5F_CRT_ADDR_BYTE_NUM_NAME, &sizeof_addr) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number in an address")
shared->sizeof_addr = sizeof_addr; /* Keep a local copy also */
/* Size of file sizes */
sizeof_size = *p++;
if(sizeof_size != 2 && sizeof_size != 4 &&
sizeof_size != 8 && sizeof_size != 16 && sizeof_size != 32)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad byte number for object size")
if(H5P_set(c_plist, H5F_CRT_OBJ_BYTE_NUM_NAME, &sizeof_size) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set byte number for object size")
shared->sizeof_size = sizeof_size; /* Keep a local copy also */
/* File status flags (not really used yet) */
sblock->status_flags = *p++;
if(sblock->status_flags & ~H5F_SUPER_ALL_FLAGS)
HGOTO_ERROR(H5E_FILE, H5E_BADVALUE, NULL, "bad flag value for superblock")
/* Base, superblock extension, end of file & root group object header addresses */
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->base_addr/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->ext_addr/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &stored_eoa/*out*/);
H5F_addr_decode(f, (const uint8_t **)&p, &sblock->root_addr/*out*/);
/* Compute checksum for superblock */
computed_chksum = H5_checksum_metadata(sbuf, (size_t)(p - sbuf), 0);
/* Decode checksum */
UINT32DECODE(p, read_chksum);
/* Verify correct checksum */
if(read_chksum != computed_chksum)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "bad checksum on driver information block")
/*
* Check if superblock address is different from base address and
* adjust base address and "end of address" address if so.
*/
if(!H5F_addr_eq(base_addr, sblock->base_addr)) {
/* Check if the superblock moved earlier in the file */
if(H5F_addr_lt(base_addr, sblock->base_addr))
stored_eoa -= (sblock->base_addr - base_addr);
else
/* The superblock moved later in the file */
stored_eoa += (base_addr - sblock->base_addr);
/* Adjust base address for offsets of the HDF5 data in the file */
sblock->base_addr = base_addr;
/* Set the base address for the file in the VFD now */
if(H5FD_set_base_addr(lf, sblock->base_addr) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTSET, NULL, "failed to set base address for file driver")
/* Indicate that the superblock should be marked dirty */
*dirtied = TRUE;
} /* end if */
/* Get the B-tree internal node values, etc */
if(H5P_get(c_plist, H5F_CRT_BTREE_RANK_NAME, sblock->btree_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes")
if(H5P_get(c_plist, H5F_CRT_SYM_LEAF_NAME, &sblock->sym_leaf_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, NULL, "unable to get rank for btree internal nodes")
} /* end else */
/*
* The user-defined data is the area of the file before the base
* address.
*/
if(H5P_set(c_plist, H5F_CRT_USER_BLOCK_NAME, &sblock->base_addr) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set userblock size")
/*
* Make sure that the data is not truncated. One case where this is
* possible is if the first file of a family of files was opened
* individually.
*/
if(HADDR_UNDEF == (eof = H5FD_get_eof(lf)))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to determine file size")
/* (Account for the stored EOA being absolute offset -QAK) */
if((eof + sblock->base_addr) < stored_eoa)
HGOTO_ERROR(H5E_FILE, H5E_TRUNCATED, NULL, "truncated file: eof = %llu, sblock->base_addr = %llu, stored_eoa = %llu", (unsigned long long)eof, (unsigned long long)sblock->base_addr, (unsigned long long)stored_eoa)
/*
* Tell the file driver how much address space has already been
* allocated so that it knows how to allocate additional memory.
*/
/* (Account for the stored EOA being absolute offset -NAF) */
if(H5FD_set_eoa(lf, H5FD_MEM_SUPER, stored_eoa - sblock->base_addr) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to set end-of-address marker for file")
/* Read the file's superblock extension, if there is one. */
if(H5F_addr_defined(sblock->ext_addr)) {
H5O_loc_t ext_loc; /* "Object location" for superblock extension */
H5O_btreek_t btreek; /* v1 B-tree 'K' value message from superblock extension */
H5O_drvinfo_t drvinfo; /* Driver info message from superblock extension */
htri_t status; /* Status for message existing */
/* Sanity check - superblock extension should only be defined for
* superblock version >= 2.
*/
HDassert(super_vers >= HDF5_SUPERBLOCK_VERSION_2);
/* Check for superblock extension being located "outside" the stored
* 'eoa' value, which can occur with the split/multi VFD.
*/
if(H5F_addr_gt(sblock->ext_addr, stored_eoa)) {
/* Set the 'eoa' for the object header memory type large enough
* to give some room for a reasonably sized superblock extension.
* (This is _rather_ a kludge -QAK)
*/
if(H5FD_set_eoa(lf, H5FD_MEM_OHDR, (haddr_t)(sblock->ext_addr + 1024)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to set end-of-address marker for file")
} /* end if */
/* Open the superblock extension */
if(H5F_super_ext_open(f, sblock->ext_addr, &ext_loc) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENOBJ, NULL, "unable to open file's superblock extension")
/* Check for the extension having a 'driver info' message */
if((status = H5O_msg_exists(&ext_loc, H5O_DRVINFO_ID, dxpl_id)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to read object header")
if(status) {
/* Check for ignoring the driver info for this file */
if(H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) {
/* Indicate that the superblock should be marked dirty */
*dirtied = TRUE;
} /* end if */
else {
/* Retrieve the 'driver info' structure */
if(NULL == H5O_msg_read(&ext_loc, H5O_DRVINFO_ID, &drvinfo, dxpl_id))
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "driver info message not present")
/* Check if driver matches driver information saved. Unfortunately, we can't push this
* function to each specific driver because we're checking if the driver is correct.
*/
if(!HDstrncmp(drvinfo.name, "NCSAfami", (size_t)8) && HDstrcmp(lf->cls->name, "family"))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "family driver should be used")
if(!HDstrncmp(drvinfo.name, "NCSAmult", (size_t)8) && HDstrcmp(lf->cls->name, "multi"))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "multi driver should be used")
/* Decode driver information */
if(H5FD_sb_decode(lf, drvinfo.name, drvinfo.buf) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to decode driver information")
/* Reset driver info message */
H5O_msg_reset(H5O_DRVINFO_ID, &drvinfo);
} /* end else */
} /* end if */
/* Read in the shared OH message information if there is any */
if(H5SM_get_info(&ext_loc, c_plist, dxpl_id) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, NULL, "unable to read SOHM table information")
/* Check for the extension having a 'v1 B-tree "K"' message */
if((status = H5O_msg_exists(&ext_loc, H5O_BTREEK_ID, dxpl_id)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "unable to read object header")
if(status) {
/* Retrieve the 'v1 B-tree "K"' structure */
if(NULL == H5O_msg_read(&ext_loc, H5O_BTREEK_ID, &btreek, dxpl_id))
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, NULL, "v1 B-tree 'K' info message not present")
/* Set non-default v1 B-tree 'K' value info from file */
sblock->btree_k[H5B_CHUNK_ID] = btreek.btree_k[H5B_CHUNK_ID];
sblock->btree_k[H5B_SNODE_ID] = btreek.btree_k[H5B_SNODE_ID];
sblock->sym_leaf_k = btreek.sym_leaf_k;
/* Set non-default v1 B-tree 'K' values in the property list */
if(H5P_set(c_plist, H5F_CRT_BTREE_RANK_NAME, btreek.btree_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for btree internal nodes")
if(H5P_set(c_plist, H5F_CRT_SYM_LEAF_NAME, &btreek.sym_leaf_k) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, NULL, "unable to set rank for symbol table leaf nodes")
} /* end if */
/* Close superblock extension */
if(H5F_super_ext_close(f, &ext_loc, dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTRELEASE, NULL, "unable to close file's superblock extension")
} /* end if */
/* Set return value */
ret_value = sblock;
done:
/* Release the [possibly partially initialized] superblock on errors */
if(!ret_value && sblock)
if(H5F_super_free(sblock) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTFREE, NULL, "unable to destroy superblock data")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5F_sblock_load() */
/*-------------------------------------------------------------------------
* Function: H5F_sblock_flush
*
* Purpose: Flushes the superblock.
*
* Return: Success: SUCCEED
* Failure: NULL
*
* Programmer: Mike McGreevy
* mamcgree@hdfgroup.org
* April 8, 2009
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_sblock_flush(H5F_t *f, hid_t dxpl_id, hbool_t destroy, haddr_t UNUSED addr,
H5F_super_t *sblock)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
HDassert(f);
HDassert(H5F_addr_eq(addr, 0));
HDassert(sblock);
if(sblock->cache_info.is_dirty) {
uint8_t buf[H5F_MAX_SUPERBLOCK_SIZE + H5F_MAX_DRVINFOBLOCK_SIZE]; /* Superblock & driver info blockencoding buffer */
uint8_t *p; /* Ptr into encoding buffer */
haddr_t rel_eoa; /* Relative EOA for file */
size_t superblock_size; /* Size of superblock, in bytes */
size_t driver_size; /* Size of driver info block (bytes)*/
/* Encode the common portion of the file superblock for all versions */
p = buf;
HDmemcpy(p, H5F_SIGNATURE, (size_t)H5F_SIGNATURE_LEN);
p += H5F_SIGNATURE_LEN;
*p++ = (uint8_t)sblock->super_vers;
/* Check for older version of superblock format */
if(sblock->super_vers < HDF5_SUPERBLOCK_VERSION_2) {
*p++ = (uint8_t)HDF5_FREESPACE_VERSION; /* (hard-wired) */
*p++ = (uint8_t)HDF5_OBJECTDIR_VERSION; /* (hard-wired) */
*p++ = 0; /* reserved*/
*p++ = (uint8_t)HDF5_SHAREDHEADER_VERSION; /* (hard-wired) */
*p++ = (uint8_t)H5F_SIZEOF_ADDR(f);
*p++ = (uint8_t)H5F_SIZEOF_SIZE(f);
*p++ = 0; /* reserved */
UINT16ENCODE(p, sblock->sym_leaf_k);
UINT16ENCODE(p, sblock->btree_k[H5B_SNODE_ID]);
UINT32ENCODE(p, (uint32_t)sblock->status_flags);
/*
* Versions of the superblock >0 have the indexed storage B-tree
* internal 'K' value stored
*/
if(sblock->super_vers > HDF5_SUPERBLOCK_VERSION_DEF) {
UINT16ENCODE(p, sblock->btree_k[H5B_CHUNK_ID]);
*p++ = 0; /*reserved */
*p++ = 0; /*reserved */
} /* end if */
H5F_addr_encode(f, &p, sblock->base_addr);
H5F_addr_encode(f, &p, sblock->ext_addr);
rel_eoa = H5FD_get_eoa(f->shared->lf, H5FD_MEM_SUPER);
H5F_addr_encode(f, &p, (rel_eoa + sblock->base_addr));
H5F_addr_encode(f, &p, sblock->driver_addr);
/* Encode the root group object entry, including the cached stab info */
if(H5G_ent_encode(f, &p, sblock->root_ent) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTENCODE, FAIL, "can't encode root group symbol table entry")
/* Encode the driver information block. */
H5_ASSIGN_OVERFLOW(driver_size, H5FD_sb_size(f->shared->lf), hsize_t, size_t);
/* Checking whether driver block address is defined here is to handle backward
* compatibility. If the file was created with v1.6 library or earlier and no
* driver info block was written in the superblock, we don't write it either even
* though there's some driver info. Otherwise, the driver block extended will
* overwrite the (meta)data right after the superblock. This situation happens to
* the family driver particularly. SLU - 2009/3/24
*/
if(driver_size > 0 && H5F_addr_defined(sblock->driver_addr)) {
char driver_name[9]; /* Name of driver, for driver info block */
uint8_t *dbuf = p; /* Pointer to beginning of driver info */
/* Encode the driver information block */
*p++ = HDF5_DRIVERINFO_VERSION_0; /* Version */
*p++ = 0; /* reserved */
*p++ = 0; /* reserved */
*p++ = 0; /* reserved */
/* Driver info size, excluding header */
UINT32ENCODE(p, driver_size);
/* Encode driver-specific data */
if(H5FD_sb_encode(f->shared->lf, driver_name, dbuf + H5F_DRVINFOBLOCK_HDR_SIZE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to encode driver information")
/* Store driver name (set in 'H5FD_sb_encode' call above) */
HDmemcpy(p, driver_name, (size_t)8);
/* Advance buffer pointer past name & variable-sized portion of driver info */
/* (for later use in computing the superblock size) */
p += 8 + driver_size;
} /* end if */
} /* end if */
else {
uint32_t chksum; /* Checksum temporary variable */
H5O_loc_t *root_oloc; /* Pointer to root group's object location */
/* Size of file addresses & offsets, and status flags */
*p++ = (uint8_t)H5F_SIZEOF_ADDR(f);
*p++ = (uint8_t)H5F_SIZEOF_SIZE(f);
*p++ = sblock->status_flags;
/* Base, superblock extension & end of file addresses */
H5F_addr_encode(f, &p, sblock->base_addr);
H5F_addr_encode(f, &p, sblock->ext_addr);
rel_eoa = H5FD_get_eoa(f->shared->lf, H5FD_MEM_SUPER);
H5F_addr_encode(f, &p, (rel_eoa + sblock->base_addr));
/* Retrieve information for root group */
if(NULL == (root_oloc = H5G_oloc(f->shared->root_grp)))
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to retrieve root group information")
/* Encode address of root group's object header */
H5F_addr_encode(f, &p, root_oloc->addr);
/* Compute superblock checksum */
chksum = H5_checksum_metadata(buf, ((size_t)H5F_SUPERBLOCK_SIZE(sblock->super_vers, f) - H5F_SIZEOF_CHKSUM), 0);
/* Superblock checksum */
UINT32ENCODE(p, chksum);
/* Sanity check */
HDassert((size_t)(p - buf) == (size_t)H5F_SUPERBLOCK_SIZE(sblock->super_vers, f));
} /* end else */
/* Retrieve the total size of the superblock info */
H5_ASSIGN_OVERFLOW(superblock_size, (p - buf), ptrdiff_t, size_t);
/* Double check we didn't overrun the block (unlikely) */
HDassert(superblock_size <= sizeof(buf));
/* Write superblock */
/* (always at relative address 0) */
if(H5FD_write(f->shared->lf, dxpl_id, H5FD_MEM_SUPER, (haddr_t)0, superblock_size, buf) < 0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "unable to write superblock")
/* Check for newer version of superblock format & superblock extension */
if(sblock->super_vers >= HDF5_SUPERBLOCK_VERSION_2 && H5F_addr_defined(sblock->ext_addr)) {
/* Check for ignoring the driver info for this file */
if(!H5F_HAS_FEATURE(f, H5FD_FEAT_IGNORE_DRVRINFO)) {
/* Check for driver info message */
H5_ASSIGN_OVERFLOW(driver_size, H5FD_sb_size(f->shared->lf), hsize_t, size_t);
if(driver_size > 0) {
H5O_drvinfo_t drvinfo; /* Driver info */
H5O_loc_t ext_loc; /* "Object location" for superblock extension */
uint8_t dbuf[H5F_MAX_DRVINFOBLOCK_SIZE]; /* Driver info block encoding buffer */
/* Sanity check */
HDassert(driver_size <= H5F_MAX_DRVINFOBLOCK_SIZE);
/* Encode driver-specific data */
if(H5FD_sb_encode(f->shared->lf, drvinfo.name, dbuf) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, "unable to encode driver information")
/* Open the superblock extension's object header */
if(H5F_super_ext_open(f, sblock->ext_addr, &ext_loc) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENOBJ, FAIL, "unable to open file's superblock extension")
/* Write driver info information to the superblock extension */
drvinfo.len = driver_size;
drvinfo.buf = dbuf;
if(H5O_msg_write(&ext_loc, H5O_DRVINFO_ID, H5O_MSG_FLAG_DONTSHARE, H5O_UPDATE_TIME, &drvinfo, dxpl_id) < 0)
HGOTO_ERROR(H5E_FILE, H5E_WRITEERROR, FAIL, "unable to update driver info header message")
/* Close the superblock extension object header */
if(H5F_super_ext_close(f, &ext_loc, dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEOBJ, FAIL, "unable to close file's superblock extension")
} /* end if */
} /* end if */
} /* end if */
/* Reset the dirty flag. */
sblock->cache_info.is_dirty = FALSE;
} /* end if */
if(destroy)
if(H5F_sblock_dest(f, sblock) < 0)
HGOTO_ERROR(H5E_FSPACE, H5E_CLOSEERROR, FAIL, "can't close superblock")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5F_sblock_flush() */
/*-------------------------------------------------------------------------
* Function: H5F_sblock_dest
*
* Purpose: Frees memory used by the superblock.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mike McGreevy
* April 8, 2009
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_sblock_dest(H5F_t UNUSED *f, H5F_super_t* sblock)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Sanity check */
HDassert(sblock);
/* Free superblock */
if(H5F_super_free(sblock) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "unable to destroy superblock")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5F_sblock_dest() */
/*-------------------------------------------------------------------------
* Function: H5F_sblock_clear
*
* Purpose: Mark the superblock as no longer being dirty.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mike McGreevy
* April 8, 2009
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_sblock_clear(H5F_t *f, H5F_super_t *sblock, hbool_t destroy)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/*
* Check arguments.
*/
HDassert(sblock);
/* Reset the dirty flag. */
sblock->cache_info.is_dirty = FALSE;
if(destroy)
if(H5F_sblock_dest(f, sblock) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFREE, FAIL, "unable to delete superblock")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5F_sblock_clear() */
/*-------------------------------------------------------------------------
* Function: H5F_sblock_size
*
* Purpose: Returns the size of the superblock encoded on disk.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mike McGreevy
* April 8, 2009
*
*-------------------------------------------------------------------------
*/
static herr_t
H5F_sblock_size(const H5F_t *f, const H5F_super_t *sblock, size_t *size_ptr)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* check arguments */
HDassert(f);
HDassert(sblock);
HDassert(size_ptr);
/* Set size value */
*size_ptr = (size_t)H5F_SUPERBLOCK_SIZE(sblock->super_vers, f);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5F_sblock_size() */
|