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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Gdense.c
* Sep 9 2006
* Quincey Koziol <koziol@hdfgroup.org>
*
* Purpose: Routines for operating on "dense" link storage for a
* group in a file.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5G_PACKAGE /*suppress error about including H5Gpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free lists */
#include "H5Gpkg.h" /* Groups */
#include "H5MMprivate.h" /* Memory management */
/****************/
/* Local Macros */
/****************/
/* Fractal heap creation parameters for "dense" link storage */
#define H5G_FHEAP_MAN_WIDTH 4
#define H5G_FHEAP_MAN_START_BLOCK_SIZE 512
#define H5G_FHEAP_MAN_MAX_DIRECT_SIZE (64 * 1024)
#define H5G_FHEAP_MAN_MAX_INDEX 32
#define H5G_FHEAP_MAN_START_ROOT_ROWS 1
#define H5G_FHEAP_CHECKSUM_DBLOCKS TRUE
#define H5G_FHEAP_MAX_MAN_SIZE (4 * 1024)
/* v2 B-tree creation macros for 'name' field index */
#define H5G_NAME_BT2_NODE_SIZE 512
#define H5G_NAME_BT2_MERGE_PERC 40
#define H5G_NAME_BT2_SPLIT_PERC 100
/* v2 B-tree creation macros for 'corder' field index */
#define H5G_CORDER_BT2_NODE_SIZE 512
#define H5G_CORDER_BT2_MERGE_PERC 40
#define H5G_CORDER_BT2_SPLIT_PERC 100
/* Size of stack buffer for serialized link */
#define H5G_LINK_BUF_SIZE 128
/******************/
/* Local Typedefs */
/******************/
/* Data exchange structure to use when building table of links in group */
typedef struct {
H5G_link_table_t *ltable; /* Pointer to link table to build */
size_t curr_lnk; /* Current link to operate on */
} H5G_dense_bt_ud_t;
/*
* Data exchange structure to pass through the v2 B-tree layer for the
* H5B2_iterate function when iterating over densely stored links.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
H5HF_t *fheap; /* Fractal heap handle */
/* downward (from application) */
hid_t gid; /* Group ID for application callback */
hsize_t skip; /* Number of links to skip */
hsize_t *last_lnk; /* Pointer to the last link operated on */
H5G_link_iterate_t *lnk_op; /* Callback for each link */
void *op_data; /* Callback data for each link */
/* upward */
int op_ret; /* Return value from callback */
} H5G_bt2_ud_it_t;
/*
* Data exchange structure to pass through the fractal heap layer for the
* H5HF_op function when iterating over densely stored links.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
/* upward */
H5O_link_t *lnk; /* Copy of link */
} H5G_fh_ud_it_t;
/*
* Data exchange structure for dense link storage. This structure is
* passed through the v2 B-tree layer when removing links.
*/
typedef struct {
/* downward */
H5G_bt2_ud_common_t common; /* Common info for B-tree user data (must be first) */
hbool_t adj_link; /* Whether to adjust link count on object */
hbool_t rem_from_fheap; /* Whether to remove the link from the fractal heap */
hbool_t rem_from_corder_index; /* Whether to remove the link from the creation order index */
haddr_t corder_bt2_addr; /* Address of v2 B-tree indexing creation order */
H5RS_str_t *grp_full_path_r; /* Full path of group where link is removed */
hbool_t replace_names; /* Whether to replace the names of open objects */
} H5G_bt2_ud_rm_t;
/*
* Data exchange structure to pass through the fractal heap layer for the
* H5HF_op function when removing a link from densely stored links.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
hbool_t adj_link; /* Whether to adjust link count on object */
hbool_t rem_from_corder_index; /* Whether to remove the link from the creation order index */
haddr_t corder_bt2_addr; /* Address of v2 B-tree indexing creation order */
H5RS_str_t *grp_full_path_r; /* Full path of group where link is removed */
hbool_t replace_names; /* Whether to replace the names of open objects */
} H5G_fh_ud_rm_t;
/*
* Data exchange structure for dense link storage. This structure is
* passed through the v2 B-tree layer when removing links by index.
*/
typedef struct {
/* downward */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
H5HF_t *fheap; /* Fractal heap handle */
H5L_index_t idx_type; /* Primary index for removing link */
haddr_t other_bt2_addr; /* Address of "other" v2 B-tree indexing link */
H5RS_str_t *grp_full_path_r; /* Full path of group where link is removed */
} H5G_bt2_ud_rmbi_t;
/*
* Data exchange structure to pass through the fractal heap layer for the
* H5HF_op function when removing a link from densely stored links by index.
*/
typedef struct {
/* downward */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
/* upward */
H5O_link_t *lnk; /* Pointer to link to remove */
} H5G_fh_ud_rmbi_t;
/*
* Data exchange structure to pass through the v2 B-tree layer for the
* H5B2_index function when retrieving the name of a link by index.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
H5HF_t *fheap; /* Fractal heap handle */
/* downward (from application) */
char *name; /* Name buffer to fill */
size_t name_size; /* Size of name buffer to fill */
/* upward */
ssize_t name_len; /* Full length of name */
} H5G_bt2_ud_gnbi_t;
/*
* Data exchange structure to pass through the fractal heap layer for the
* H5HF_op function when retrieving the name of a link by index.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
/* downward (from application) */
char *name; /* Name buffer to fill */
size_t name_size; /* Size of name buffer to fill */
/* upward */
ssize_t name_len; /* Full length of name */
} H5G_fh_ud_gnbi_t;
/*
* Data exchange structure to pass through the v2 B-tree layer for the
* H5B2_index function when retrieving a link by index.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
H5HF_t *fheap; /* Fractal heap handle */
/* upward */
H5O_link_t *lnk; /* Pointer to link */
} H5G_bt2_ud_lbi_t;
/*
* Data exchange structure to pass through the fractal heap layer for the
* H5HF_op function when retrieving a link by index.
*/
typedef struct {
/* downward (internal) */
H5F_t *f; /* Pointer to file that fractal heap is in */
hid_t dxpl_id; /* DXPL for operation */
/* upward */
H5O_link_t *lnk; /* Pointer to link */
} H5G_fh_ud_lbi_t;
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Declare a free list to manage the serialized link information */
H5FL_BLK_DEFINE(ser_link);
/*-------------------------------------------------------------------------
* Function: H5G_dense_create
*
* Purpose: Creates dense link storage structures for a group
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 9 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_create(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo)
{
H5HF_create_t fheap_cparam; /* Fractal heap creation parameters */
H5HF_t *fheap; /* Fractal heap handle */
size_t fheap_id_len; /* Fractal heap ID length */
size_t bt2_rrec_size; /* v2 B-tree raw record size */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_create, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
/* Set fractal heap creation parameters */
/* XXX: Give some control of these to applications? */
HDmemset(&fheap_cparam, 0, sizeof(fheap_cparam));
fheap_cparam.managed.width = H5G_FHEAP_MAN_WIDTH;
fheap_cparam.managed.start_block_size = H5G_FHEAP_MAN_START_BLOCK_SIZE;
fheap_cparam.managed.max_direct_size = H5G_FHEAP_MAN_MAX_DIRECT_SIZE;
fheap_cparam.managed.max_index = H5G_FHEAP_MAN_MAX_INDEX;
fheap_cparam.managed.start_root_rows = H5G_FHEAP_MAN_START_ROOT_ROWS;
fheap_cparam.checksum_dblocks = H5G_FHEAP_CHECKSUM_DBLOCKS;
fheap_cparam.max_man_size = H5G_FHEAP_MAX_MAN_SIZE;
/* Create fractal heap for storing links */
if(NULL == (fheap = H5HF_create(f, dxpl_id, &fheap_cparam)))
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create fractal heap")
/* Retrieve the heap's address in the file */
if(H5HF_get_heap_addr(fheap, &(linfo->link_fheap_addr)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGETSIZE, FAIL, "can't get fractal heap address")
#ifdef QAK
HDfprintf(stderr, "%s: linfo->link_fheap_addr = %a\n", FUNC, linfo->link_fheap_addr);
#endif /* QAK */
/* Retrieve the heap's ID length in the file */
if(H5HF_get_id_len(fheap, &fheap_id_len) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGETSIZE, FAIL, "can't get fractal heap ID length")
HDassert(fheap_id_len == H5G_DENSE_FHEAP_ID_LEN);
#ifdef QAK
HDfprintf(stderr, "%s: fheap_id_len = %Zu\n", FUNC, fheap_id_len);
#endif /* QAK */
/* Close the fractal heap */
if(H5HF_close(fheap, dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
/* Create the name index v2 B-tree */
bt2_rrec_size = 4 + /* Name's hash value */
fheap_id_len; /* Fractal heap ID */
if(H5B2_create(f, dxpl_id, H5G_BT2_NAME,
(size_t)H5G_NAME_BT2_NODE_SIZE, bt2_rrec_size,
H5G_NAME_BT2_SPLIT_PERC, H5G_NAME_BT2_MERGE_PERC,
&(linfo->name_bt2_addr)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create v2 B-tree for name index")
#ifdef QAK
HDfprintf(stderr, "%s: linfo->name_bt2_addr = %a\n", FUNC, linfo->name_bt2_addr);
#endif /* QAK */
/* Check if we should create a creation order index v2 B-tree */
if(linfo->index_corder) {
/* Create the creation order index v2 B-tree */
bt2_rrec_size = 8 + /* Creation order value */
fheap_id_len; /* Fractal heap ID */
if(H5B2_create(f, dxpl_id, H5G_BT2_CORDER,
(size_t)H5G_CORDER_BT2_NODE_SIZE, bt2_rrec_size,
H5G_CORDER_BT2_SPLIT_PERC, H5G_CORDER_BT2_MERGE_PERC,
&(linfo->corder_bt2_addr)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create v2 B-tree for name index")
#ifdef QAK
HDfprintf(stderr, "%s: linfo->corder_bt2_addr = %a\n", FUNC, linfo->corder_bt2_addr);
#endif /* QAK */
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_create() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_insert
*
* Purpose: Insert a link into the dense link storage structures for a group
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_insert(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
const H5O_link_t *lnk)
{
H5G_bt2_ud_ins_t udata; /* User data for v2 B-tree insertion */
H5HF_t *fheap = NULL; /* Fractal heap handle */
size_t link_size; /* Size of serialized link in the heap */
uint8_t link_buf[H5G_LINK_BUF_SIZE]; /* Buffer for serializing link */
void *link_ptr = NULL; /* Pointer to serialized link */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_insert, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
HDassert(lnk);
#ifdef QAK
HDfprintf(stderr, "%s: linfo->link_fheap_addr = %a\n", FUNC, linfo->link_fheap_addr);
HDfprintf(stderr, "%s: linfo->name_bt2_addr = %a\n", FUNC, linfo->name_bt2_addr);
#endif /* QAK */
/* Find out the size of buffer needed for serialized link */
if((link_size = H5O_raw_size(H5O_LINK_ID, f, lnk)) == 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGETSIZE, FAIL, "can't get link size")
#ifdef QAK
HDfprintf(stderr, "%s: HDstrlen(lnk->name) = %Zu, link_size = %Zu\n", FUNC, HDstrlen(lnk->name), link_size);
#endif /* QAK */
/* Allocate space for serialized link, if necessary */
if(link_size > sizeof(link_buf)) {
if(NULL == (link_ptr = H5FL_BLK_MALLOC(ser_link, link_size)))
HGOTO_ERROR(H5E_SYM, H5E_NOSPACE, FAIL, "memory allocation failed")
} /* end if */
else
link_ptr = link_buf;
/* Create serialized form of link */
if(H5O_encode(f, link_ptr, lnk, H5O_LINK_ID) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTENCODE, FAIL, "can't encode link")
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Insert the serialized link into the fractal heap */
if(H5HF_insert(fheap, dxpl_id, link_size, link_ptr, udata.id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert link into fractal heap")
/* Create the callback information for v2 B-tree record insertion */
udata.common.f = f;
udata.common.dxpl_id = dxpl_id;
udata.common.fheap = fheap;
udata.common.name = lnk->name;
udata.common.name_hash = H5_checksum_lookup3(lnk->name, HDstrlen(lnk->name), 0);
udata.common.corder = lnk->corder;
udata.common.found_op = NULL;
udata.common.found_op_data = NULL;
/* udata.id already set in H5HF_insert() call */
/* Insert link into 'name' tracking v2 B-tree */
if(H5B2_insert(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert record into v2 B-tree")
/* Check if we should create a creation order index v2 B-tree record */
if(linfo->index_corder) {
/* Insert the record into the creation order index v2 B-tree */
HDassert(H5F_addr_defined(linfo->corder_bt2_addr));
if(H5B2_insert(f, dxpl_id, H5G_BT2_CORDER, linfo->corder_bt2_addr, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert record into v2 B-tree")
} /* end if */
done:
/* Release resources */
if(fheap)
if(H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(link_ptr && link_ptr != link_buf)
H5FL_BLK_FREE(ser_link, link_ptr);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_insert() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_lookup_cb
*
* Purpose: Callback when a link is located in an index
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_lookup_cb(const void *_lnk, void *_user_lnk)
{
const H5O_link_t *lnk = (const H5O_link_t *)_lnk; /* Record from B-tree */
H5O_link_t *user_lnk = (H5O_link_t *)_user_lnk; /* User data from v2 B-tree link lookup */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_lookup_cb)
/*
* Check arguments.
*/
HDassert(lnk);
HDassert(user_lnk);
/* Check if we want the link information */
if(user_lnk) {
/* Copy link information */
if(H5O_copy(H5O_LINK_ID, lnk, user_lnk) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, H5_ITER_ERROR, "can't copy link message")
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_lookup_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_lookup
*
* Purpose: Look up a link within a group that uses dense link storage
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_lookup(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
const char *name, H5O_link_t *lnk)
{
H5G_bt2_ud_common_t udata; /* User data for v2 B-tree link lookup */
H5HF_t *fheap = NULL; /* Fractal heap handle */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_lookup, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
HDassert(name && *name);
HDassert(lnk);
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Construct the user data for v2 B-tree callback */
udata.f = f;
udata.dxpl_id = dxpl_id;
udata.fheap = fheap;
udata.name = name;
udata.name_hash = H5_checksum_lookup3(name, HDstrlen(name), 0);
udata.found_op = H5G_dense_lookup_cb; /* v2 B-tree comparison callback */
udata.found_op_data = lnk;
/* Find & copy the named link in the 'name' index */
if(H5B2_find(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr, &udata, NULL, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to locate link in name index")
done:
/* Release resources */
if(fheap)
if(H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_lookup() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_lookup_by_idx_fh_cb
*
* Purpose: Callback for fractal heap operator, to make copy of link when
* when lookup up a link by index
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 7 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_lookup_by_idx_fh_cb(const void *obj, size_t UNUSED obj_len, void *_udata)
{
H5G_fh_ud_lbi_t *udata = (H5G_fh_ud_lbi_t *)_udata; /* User data for fractal heap 'op' callback */
H5O_link_t *tmp_lnk = NULL; /* Temporary pointer to link */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_lookup_by_idx_fh_cb)
/* Decode link information & keep a copy */
if(NULL == (tmp_lnk = H5O_decode(udata->f, udata->dxpl_id, obj, H5O_LINK_ID)))
HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link")
/* Copy link information */
if(NULL == H5O_copy(H5O_LINK_ID, tmp_lnk, udata->lnk))
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, H5_ITER_ERROR, "can't copy link message")
done:
/* Release the space allocated for the link */
if(tmp_lnk)
H5O_free(H5O_LINK_ID, tmp_lnk);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_lookup_by_idx_fh_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_lookup_by_idx_bt2_cb
*
* Purpose: v2 B-tree callback for dense link storage lookup by index
*
* Return: H5_ITER_ERROR/H5_ITER_CONT/H5_ITER_STOP
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 7 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_lookup_by_idx_bt2_cb(const void *_record, void *_bt2_udata)
{
const H5G_dense_bt2_name_rec_t *record = (const H5G_dense_bt2_name_rec_t *)_record;
H5G_bt2_ud_lbi_t *bt2_udata = (H5G_bt2_ud_lbi_t *)_bt2_udata; /* User data for callback */
H5G_fh_ud_lbi_t fh_udata; /* User data for fractal heap 'op' callback */
int ret_value = H5_ITER_CONT; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_lookup_by_idx_bt2_cb)
/* Prepare user data for callback */
/* down */
fh_udata.f = bt2_udata->f;
fh_udata.dxpl_id = bt2_udata->dxpl_id;
fh_udata.lnk = bt2_udata->lnk;
/* Call fractal heap 'op' routine, to copy the link information */
if(H5HF_op(bt2_udata->fheap, bt2_udata->dxpl_id, record->id,
H5G_dense_lookup_by_idx_fh_cb, &fh_udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPERATE, H5_ITER_ERROR, "link found callback failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_lookup_by_idx_bt2_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_lookup_by_idx
*
* Purpose: Look up a link within a group that uses dense link storage,
* according to the order of an index
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 7 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_lookup_by_idx(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
H5L_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_link_t *lnk)
{
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_link_table_t ltable = {0, NULL}; /* Table of links */
const H5B2_class_t *bt2_class = NULL; /* Class of v2 B-tree */
haddr_t bt2_addr; /* Address of v2 B-tree to use for lookup */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_lookup_by_idx, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
HDassert(lnk);
/* Determine the address of the index to use */
if(idx_type == H5L_INDEX_NAME) {
/* Check if "native" order is OK - since names are hashed, getting them
* in strictly increasing or decreasing order requires building a
* table and sorting it.
*/
if(order == H5_ITER_NATIVE) {
bt2_addr = linfo->name_bt2_addr;
bt2_class = H5G_BT2_NAME;
HDassert(H5F_addr_defined(bt2_addr));
} /* end if */
else
bt2_addr = HADDR_UNDEF;
} /* end if */
else {
HDassert(idx_type == H5L_INDEX_CRT_ORDER);
/* This address may not be defined if creation order is tracked, but
* there's no index on it. If there's no v2 B-tree that indexes
* the links, a table will be built.
*/
bt2_addr = linfo->corder_bt2_addr;
bt2_class = H5G_BT2_CORDER;
} /* end else */
/* If there is an index defined for the field, use it */
if(H5F_addr_defined(bt2_addr)) {
H5G_bt2_ud_lbi_t udata; /* User data for v2 B-tree link lookup */
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Construct the user data for v2 B-tree callback */
udata.f = f;
udata.dxpl_id = dxpl_id;
udata.fheap = fheap;
udata.lnk = lnk;
/* Find & copy the link in the appropriate index */
if(H5B2_index(f, dxpl_id, bt2_class, bt2_addr, order, n, H5G_dense_lookup_by_idx_bt2_cb, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to locate link in index")
} /* end if */
else { /* Otherwise, we need to build a table of the links and sort it */
/* Build the table of links for this group */
if(H5G_dense_build_table(f, dxpl_id, linfo, idx_type, order, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "error building table of links")
/* Check for going out of bounds */
if(n >= ltable.nlinks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "index out of bound")
/* Copy link information */
if(NULL == H5O_copy(H5O_LINK_ID, <able.lnks[n], lnk))
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, H5_ITER_ERROR, "can't copy link message")
} /* end else */
done:
/* Release resources */
if(fheap && H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(ltable.lnks && H5G_link_release_table(<able) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, H5G_UNKNOWN, "unable to release link table")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_lookup_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_build_table_cb
*
* Purpose: Callback routine for building table of links from dense
* link storage.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sept 25 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_build_table_cb(const H5O_link_t *lnk, void *_udata)
{
H5G_dense_bt_ud_t *udata = (H5G_dense_bt_ud_t *)_udata; /* 'User data' passed in */
herr_t ret_value = H5_ITER_CONT; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_build_table_cb)
/* check arguments */
HDassert(lnk);
HDassert(udata);
HDassert(udata->curr_lnk < udata->ltable->nlinks);
/* Copy link information */
if(H5O_copy(H5O_LINK_ID, lnk, &(udata->ltable->lnks[udata->curr_lnk])) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, H5_ITER_ERROR, "can't copy link message")
/* Increment number of links stored */
udata->curr_lnk++;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_build_table_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_build_table
*
* Purpose: Builds a table containing a sorted (alphabetically) list of
* links for a group
*
* Note: Used for building table of links in non-native iteration order
* for an index
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Sep 25, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_build_table(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
H5L_index_t idx_type, H5_iter_order_t order, H5G_link_table_t *ltable)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_build_table)
/* Sanity check */
HDassert(f);
HDassert(linfo);
HDassert(ltable);
/* Set size of table */
H5_CHECK_OVERFLOW(linfo->nlinks, /* From: */ hsize_t, /* To: */ size_t);
ltable->nlinks = (size_t)linfo->nlinks;
/* Allocate space for the table entries */
if(ltable->nlinks > 0) {
H5G_dense_bt_ud_t udata; /* User data for iteration callback */
H5G_link_iterate_t lnk_op; /* Link operator */
/* Allocate the table to store the links */
if((ltable->lnks = H5MM_malloc(sizeof(H5O_link_t) * ltable->nlinks)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Set up user data for iteration */
udata.ltable = ltable;
udata.curr_lnk = 0;
/* Build iterator operator */
lnk_op.op_type = H5G_LINK_OP_LIB;
lnk_op.u.lib_op = H5G_dense_build_table_cb;
/* Iterate over the links in the group, building a table of the link messages */
if(H5G_dense_iterate(f, dxpl_id, linfo, H5L_INDEX_NAME, H5_ITER_NATIVE, (hsize_t)0, NULL, (hid_t)0, &lnk_op, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTNEXT, FAIL, "error iterating over links")
/* Sort link table in correct iteration order */
if(H5G_link_sort_table(ltable, idx_type, order) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTSORT, FAIL, "error sorting link messages")
} /* end if */
else
ltable->lnks = NULL;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_build_table() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_iterate_fh_cb
*
* Purpose: Callback for fractal heap operator, to make user's callback
* when iterating over links
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_iterate_fh_cb(const void *obj, size_t UNUSED obj_len, void *_udata)
{
H5G_fh_ud_it_t *udata = (H5G_fh_ud_it_t *)_udata; /* User data for fractal heap 'op' callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_iterate_fh_cb)
/* Decode link information & keep a copy */
/* (we make a copy instead of calling the user/library callback directly in
* this routine because this fractal heap 'op' callback routine is called
* with the direct block protected and if the callback routine invokes an
* HDF5 routine, it could attempt to re-protect that direct block for the
* heap, causing the HDF5 routine called to fail)
*/
if(NULL == (udata->lnk = H5O_decode(udata->f, udata->dxpl_id, obj, H5O_LINK_ID)))
HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_iterate_fh_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_iterate_bt2_cb
*
* Purpose: v2 B-tree callback for dense link storage iterator
*
* Return: H5_ITER_ERROR/H5_ITER_CONT/H5_ITER_STOP
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_iterate_bt2_cb(const void *_record, void *_bt2_udata)
{
const H5G_dense_bt2_name_rec_t *record = (const H5G_dense_bt2_name_rec_t *)_record;
H5G_bt2_ud_it_t *bt2_udata = (H5G_bt2_ud_it_t *)_bt2_udata; /* User data for callback */
int ret_value = H5_ITER_CONT; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_iterate_bt2_cb)
/* Check for skipping links */
if(bt2_udata->skip > 0)
--bt2_udata->skip;
else {
H5G_fh_ud_it_t fh_udata; /* User data for fractal heap 'op' callback */
/* Prepare user data for callback */
/* down */
fh_udata.f = bt2_udata->f;
fh_udata.dxpl_id = bt2_udata->dxpl_id;
/* Call fractal heap 'op' routine, to copy the link information */
if(H5HF_op(bt2_udata->fheap, bt2_udata->dxpl_id, record->id,
H5G_dense_iterate_fh_cb, &fh_udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPERATE, H5_ITER_ERROR, "link found callback failed")
/* Check which type of callback to make */
switch(bt2_udata->lnk_op->op_type) {
case H5G_LINK_OP_OLD:
/* Make the old-type application callback */
ret_value = (bt2_udata->lnk_op->u.old_op)(bt2_udata->gid, fh_udata.lnk->name, bt2_udata->op_data);
break;
case H5G_LINK_OP_APP:
{
H5L_info_t info; /* Link info */
/* Retrieve the info for the link */
if(H5G_link_to_info(fh_udata.lnk, &info) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5_ITER_ERROR, "unable to get info for link")
/* Make the application callback */
ret_value = (bt2_udata->lnk_op->u.app_op)(bt2_udata->gid, fh_udata.lnk->name, &info, bt2_udata->op_data);
}
break;
case H5G_LINK_OP_LIB:
/* Call the library's callback */
ret_value = (bt2_udata->lnk_op->u.lib_op)(fh_udata.lnk, bt2_udata->op_data);
} /* end switch */
/* Release the space allocated for the link */
H5O_free(H5O_LINK_ID, fh_udata.lnk);
} /* end else */
/* Increment the number of entries passed through */
/* (whether we skipped them or not) */
if(bt2_udata->last_lnk)
(*bt2_udata->last_lnk)++;
/* Check for callback failure and pass along return value */
if(ret_value < 0)
HERROR(H5E_SYM, H5E_CANTNEXT, "iteration operator failed");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_iterate_bt2_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_iterate
*
* Purpose: Iterate over the objects in a group using dense link storage
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 11 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_iterate(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
H5L_index_t idx_type, H5_iter_order_t order, hsize_t skip, hsize_t *last_lnk,
hid_t gid, H5G_link_iterate_t *lnk_op, void *op_data)
{
H5G_bt2_ud_it_t udata; /* User data for iterator callback */
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_link_table_t ltable = {0, NULL}; /* Table of links */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_iterate, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
HDassert(lnk_op && lnk_op->u.lib_op);
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Check on iteration order */
/* ("native" iteration order is unordered for this link storage mechanism) */
if(order == H5_ITER_NATIVE) {
/* Construct the user data for v2 B-tree iterator callback */
udata.f = f;
udata.dxpl_id = dxpl_id;
udata.fheap = fheap;
udata.gid = gid;
udata.skip = skip;
udata.last_lnk = last_lnk;
udata.lnk_op = lnk_op;
udata.op_data = op_data;
/* Iterate over the records in the v2 B-tree's "native" order */
/* (by hash of name) */
if((ret_value = H5B2_iterate(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr,
H5G_dense_iterate_bt2_cb, &udata)) < 0)
HERROR(H5E_SYM, H5E_BADITER, "link iteration failed");
} /* end if */
else {
/* Build the table of links for this group */
if(H5G_dense_build_table(f, dxpl_id, linfo, idx_type, order, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "error building table of links")
/* Iterate over links in table */
if((ret_value = H5G_link_iterate_table(<able, skip, last_lnk, gid, lnk_op, op_data)) < 0)
HERROR(H5E_SYM, H5E_CANTNEXT, "iteration operator failed");
} /* end else */
done:
/* Release resources */
if(fheap && H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(ltable.lnks && H5G_link_release_table(<able) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, H5G_UNKNOWN, "unable to release link table")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_iterate() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_get_name_by_idx_fh_cb
*
* Purpose: Callback for fractal heap operator, to retrieve name according
* to an index
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 19 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_get_name_by_idx_fh_cb(const void *obj, size_t UNUSED obj_len, void *_udata)
{
H5G_fh_ud_gnbi_t *udata = (H5G_fh_ud_gnbi_t *)_udata; /* User data for fractal heap 'op' callback */
H5O_link_t *lnk; /* Pointer to link created from heap object */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_get_name_by_idx_fh_cb)
/* Decode link information */
if(NULL == (lnk = H5O_decode(udata->f, udata->dxpl_id, obj, H5O_LINK_ID)))
HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, FAIL, "can't decode link")
/* Get the length of the name */
udata->name_len = (ssize_t)HDstrlen(lnk->name);
/* Copy the name into the user's buffer, if given */
if(udata->name) {
HDstrncpy(udata->name, lnk->name, MIN((size_t)(udata->name_len + 1), udata->name_size));
if((size_t)udata->name_len >= udata->name_size)
udata->name[udata->name_size - 1] = '\0';
} /* end if */
/* Release the space allocated for the link */
H5O_free(H5O_LINK_ID, lnk);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_get_name_by_idx_fh_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_get_name_by_idx_bt2_cb
*
* Purpose: v2 B-tree callback for dense link storage 'get name by idx' call
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 19 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_get_name_by_idx_bt2_cb(const void *_record, void *_bt2_udata)
{
const H5G_dense_bt2_name_rec_t *record = (const H5G_dense_bt2_name_rec_t *)_record;
H5G_bt2_ud_gnbi_t *bt2_udata = (H5G_bt2_ud_gnbi_t *)_bt2_udata; /* User data for callback */
H5G_fh_ud_gnbi_t fh_udata; /* User data for fractal heap 'op' callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_get_name_by_idx_bt2_cb)
/* Prepare user data for callback */
/* down */
fh_udata.f = bt2_udata->f;
fh_udata.dxpl_id = bt2_udata->dxpl_id;
fh_udata.name = bt2_udata->name;
fh_udata.name_size = bt2_udata->name_size;
/* Call fractal heap 'op' routine, to perform user callback */
if(H5HF_op(bt2_udata->fheap, bt2_udata->dxpl_id, record->id,
H5G_dense_get_name_by_idx_fh_cb, &fh_udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPERATE, FAIL, "link found callback failed")
/* Set the name's full length to return */
bt2_udata->name_len = fh_udata.name_len;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_get_name_by_idx_bt2_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_get_name_by_idx
*
* Purpose: Returns the name of objects in the group by giving index.
*
* Return: Success: Non-negative, length of name
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 19 2006
*
*-------------------------------------------------------------------------
*/
ssize_t
H5G_dense_get_name_by_idx(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo,
H5L_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name,
size_t size)
{
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_link_table_t ltable = {0, NULL}; /* Table of links */
const H5B2_class_t *bt2_class = NULL; /* Class of v2 B-tree */
haddr_t bt2_addr; /* Address of v2 B-tree to use for lookup */
ssize_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_get_name_by_idx, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
/* Determine the address of the index to use */
if(idx_type == H5L_INDEX_NAME) {
/* Check if "native" order is OK - since names are hashed, getting them
* in strictly increasing or decreasing order requires building a
* table and sorting it.
*/
if(order == H5_ITER_NATIVE) {
bt2_addr = linfo->name_bt2_addr;
bt2_class = H5G_BT2_NAME;
HDassert(H5F_addr_defined(bt2_addr));
} /* end if */
else
bt2_addr = HADDR_UNDEF;
} /* end if */
else {
HDassert(idx_type == H5L_INDEX_CRT_ORDER);
/* This address may not be defined if creation order is tracked, but
* there's no index on it. If there's no v2 B-tree that indexes
* the links, a table will be built.
*/
bt2_addr = linfo->corder_bt2_addr;
bt2_class = H5G_BT2_CORDER;
} /* end else */
/* If there is an index defined for the field, use it */
if(H5F_addr_defined(bt2_addr)) {
H5G_bt2_ud_gnbi_t udata; /* User data for v2 B-tree callback */
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Set up the user data for the v2 B-tree 'record remove' callback */
udata.f = f;
udata.dxpl_id = dxpl_id;
udata.fheap = fheap;
udata.name = name;
udata.name_size = size;
/* Retrieve the name according to the v2 B-tree's index order */
if(H5B2_index(f, dxpl_id, bt2_class, bt2_addr, order, n, H5G_dense_get_name_by_idx_bt2_cb, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTLIST, FAIL, "can't locate object in v2 B-tree")
/* Set return value */
ret_value = udata.name_len;
} /* end if */
else { /* Otherwise, we need to build a table of the links and sort it */
/* Build the table of links for this group */
if(H5G_dense_build_table(f, dxpl_id, linfo, idx_type, order, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "error building table of links")
/* Check for going out of bounds */
if(n >= ltable.nlinks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "index out of bound")
/* Get the length of the name */
ret_value = (ssize_t)HDstrlen(ltable.lnks[n].name);
/* Copy the name into the user's buffer, if given */
if(name) {
HDstrncpy(name, ltable.lnks[n].name, MIN((size_t)(ret_value + 1), size));
if((size_t)ret_value >= size)
name[size - 1]='\0';
} /* end if */
} /* end else */
done:
/* Release resources */
if(fheap && H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(ltable.lnks && H5G_link_release_table(<able) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, H5G_UNKNOWN, "unable to release link table")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_get_name_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_get_type_by_idx
*
* Purpose: Returns the type of objects in the group by giving index.
*
* Note: This routine assumes a lookup on the link name index in
* increasing order and isn't currently set up to be as
* flexible as other routines in this code module, because
* the H5Gget_objtype_by_idx that it's supporting is
* deprecated.
*
* Return: Success: Non-negative, object type
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 19 2006
*
*-------------------------------------------------------------------------
*/
H5G_obj_t
H5G_dense_get_type_by_idx(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo,
hsize_t idx)
{
H5G_link_table_t ltable = {0, NULL}; /* Table of links */
H5G_obj_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_get_type_by_idx, H5G_UNKNOWN)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
/* Build the table of links for this group */
if(H5G_dense_build_table(f, dxpl_id, linfo, H5L_INDEX_NAME, H5_ITER_INC, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, H5G_UNKNOWN, "error building table of links")
/* Check for going out of bounds */
if(idx >= ltable.nlinks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, H5G_UNKNOWN, "index out of bound")
/* Determine type of object */
if(ltable.lnks[idx].type == H5L_TYPE_SOFT)
ret_value = H5G_LINK;
else if(ltable.lnks[idx].type >= H5L_TYPE_UD_MIN)
ret_value = H5G_UDLINK;
else if(ltable.lnks[idx].type == H5L_TYPE_HARD){
H5O_loc_t tmp_oloc; /* Temporary object location */
/* Build temporary object location */
tmp_oloc.file = f;
tmp_oloc.addr = ltable.lnks[idx].u.hard.addr;
/* Get the type of the object */
if((ret_value = H5O_obj_type(&tmp_oloc, dxpl_id)) == H5G_UNKNOWN)
HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, H5G_UNKNOWN, "can't determine object type")
} else {
HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, H5G_UNKNOWN, "unknown link type")
} /* end else */
done:
/* Release link table */
if(ltable.lnks && H5G_link_release_table(<able) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, H5G_UNKNOWN, "unable to release link table")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_get_type_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove_fh_cb
*
* Purpose: Callback for fractal heap operator when removing over links
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 12 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_remove_fh_cb(const void *obj, size_t UNUSED obj_len, void *_udata)
{
H5G_fh_ud_rm_t *udata = (H5G_fh_ud_rm_t *)_udata; /* User data for fractal heap 'op' callback */
H5O_link_t *lnk; /* Pointer to link created from heap object */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_remove_fh_cb)
/* Decode link information */
if(NULL == (lnk = H5O_decode(udata->f, udata->dxpl_id, obj, H5O_LINK_ID)))
HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, H5_ITER_ERROR, "can't decode link")
/* Check for removing the link from the creation order index */
if(udata->rem_from_corder_index) {
H5G_bt2_ud_common_t bt2_udata; /* Info for B-tree callbacks */
/* Set up the user data for the v2 B-tree 'record remove' callback */
HDassert(lnk->corder_valid);
bt2_udata.corder = lnk->corder;
/* Remove the record from the name index v2 B-tree */
HDassert(H5F_addr_defined(udata->corder_bt2_addr));
if(H5B2_remove(udata->f, udata->dxpl_id, H5G_BT2_CORDER, udata->corder_bt2_addr,
&bt2_udata, NULL, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, H5_ITER_ERROR, "unable to remove link from creation order index v2 B-tree")
} /* end if */
/* Replace open objects' names, if requested */
if(udata->replace_names)
if(H5G_link_name_replace(udata->f, udata->dxpl_id, udata->grp_full_path_r, lnk->name, lnk->type, lnk->u.hard.addr) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTRENAME, FAIL, "unable to rename open objects")
/* Perform the deletion action on the link */
/* (call link message "delete" callback directly: *ick* - QAK) */
if(H5O_link_delete(udata->f, udata->dxpl_id, lnk, udata->adj_link) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete link")
/* Release the space allocated for the link */
H5O_free(H5O_LINK_ID, lnk);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove_fh_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove_bt2_cb
*
* Purpose: v2 B-tree callback for dense link storage record removal
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 12 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_remove_bt2_cb(const void *_record, void *_bt2_udata)
{
const H5G_dense_bt2_name_rec_t *record = (const H5G_dense_bt2_name_rec_t *)_record;
H5G_bt2_ud_rm_t *bt2_udata = (H5G_bt2_ud_rm_t *)_bt2_udata; /* User data for callback */
H5G_fh_ud_rm_t fh_udata; /* User data for fractal heap 'op' callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_remove_bt2_cb)
/* Set up the user data for fractalheap 'op' callback */
fh_udata.f = bt2_udata->common.f;
fh_udata.dxpl_id = bt2_udata->common.dxpl_id;
fh_udata.adj_link = bt2_udata->adj_link;
fh_udata.rem_from_corder_index = bt2_udata->rem_from_corder_index;
fh_udata.corder_bt2_addr = bt2_udata->corder_bt2_addr;
fh_udata.grp_full_path_r = bt2_udata->grp_full_path_r;
fh_udata.replace_names = bt2_udata->replace_names;
/* Call fractal heap 'op' routine, to perform user callback */
if(H5HF_op(bt2_udata->common.fheap, bt2_udata->common.dxpl_id, record->id,
H5G_dense_remove_fh_cb, &fh_udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPERATE, FAIL, "link removal callback failed")
/* Remove record from fractal heap, if requested */
if(bt2_udata->rem_from_fheap)
if(H5HF_remove(bt2_udata->common.fheap, bt2_udata->common.dxpl_id, record->id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, FAIL, "unable to remove link from fractal heap")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove_bt2_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove
*
* Purpose: Remove a link from the dense storage of a group
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 12 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_remove(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
H5RS_str_t *grp_full_path_r, const char *name)
{
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_bt2_ud_rm_t udata; /* User data for v2 B-tree record removal */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_remove, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
HDassert(name && *name);
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Set up the user data for the v2 B-tree 'record remove' callback */
udata.common.f = f;
udata.common.dxpl_id = dxpl_id;
udata.common.fheap = fheap;
udata.common.name = name;
udata.common.name_hash = H5_checksum_lookup3(name, HDstrlen(name), 0);
udata.common.found_op = NULL;
udata.common.found_op_data = NULL;
udata.adj_link = TRUE;
udata.rem_from_fheap = TRUE;
udata.rem_from_corder_index = H5F_addr_defined(linfo->corder_bt2_addr);
udata.corder_bt2_addr = linfo->corder_bt2_addr;
udata.grp_full_path_r = grp_full_path_r;
udata.replace_names = TRUE;
/* Remove the record from the name index v2 B-tree */
if(H5B2_remove(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr,
&udata, H5G_dense_remove_bt2_cb, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, FAIL, "unable to remove link from name index v2 B-tree")
done:
/* Release resources */
if(fheap)
if(H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove_by_idx_fh_cb
*
* Purpose: Callback for fractal heap operator when removing links by index
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 15 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_remove_by_idx_fh_cb(const void *obj, size_t UNUSED obj_len, void *_udata)
{
H5G_fh_ud_rmbi_t *udata = (H5G_fh_ud_rmbi_t *)_udata; /* User data for fractal heap 'op' callback */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_remove_by_idx_fh_cb)
/* Decode link information */
if(NULL == (udata->lnk = H5O_decode(udata->f, udata->dxpl_id, obj, H5O_LINK_ID)))
HGOTO_ERROR(H5E_SYM, H5E_CANTDECODE, H5_ITER_ERROR, "can't decode link")
/* Can't operate on link here because the fractal heap block is locked */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove_by_idx_fh_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove_by_idx_bt2_cb
*
* Purpose: v2 B-tree callback for dense link storage record removal by index
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 15 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G_dense_remove_by_idx_bt2_cb(const void *_record, void *_bt2_udata)
{
H5G_bt2_ud_rmbi_t *bt2_udata = (H5G_bt2_ud_rmbi_t *)_bt2_udata; /* User data for callback */
H5G_fh_ud_rmbi_t fh_udata; /* User data for fractal heap 'op' callback */
const uint8_t *heap_id; /* Heap ID for link */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5G_dense_remove_by_idx_bt2_cb)
/* Determine the index being used */
if(bt2_udata->idx_type == H5L_INDEX_NAME) {
const H5G_dense_bt2_name_rec_t *record = (const H5G_dense_bt2_name_rec_t *)_record;
/* Set the heap ID to operate on */
heap_id = record->id;
} /* end if */
else {
const H5G_dense_bt2_corder_rec_t *record = (const H5G_dense_bt2_corder_rec_t *)_record;
HDassert(bt2_udata->idx_type == H5L_INDEX_CRT_ORDER);
/* Set the heap ID to operate on */
heap_id = record->id;
} /* end else */
/* Set up the user data for fractalheap 'op' callback */
fh_udata.f = bt2_udata->f;
fh_udata.dxpl_id = bt2_udata->dxpl_id;
fh_udata.lnk = NULL;
/* Call fractal heap 'op' routine, to perform user callback */
if(H5HF_op(bt2_udata->fheap, bt2_udata->dxpl_id, heap_id,
H5G_dense_remove_by_idx_fh_cb, &fh_udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPERATE, FAIL, "link removal callback failed")
HDassert(fh_udata.lnk);
/* Check for removing the link from the creation order index */
if(H5F_addr_defined(bt2_udata->other_bt2_addr)) {
H5G_bt2_ud_common_t other_bt2_udata; /* Info for B-tree callbacks */
const H5B2_class_t *other_bt2_class; /* Class of "other" v2 B-tree */
/* Determine the index being used */
if(bt2_udata->idx_type == H5L_INDEX_NAME) {
/* Set the class of the "other" index */
other_bt2_class = H5G_BT2_CORDER;
/* Set up the user data for the v2 B-tree 'record remove' callback */
other_bt2_udata.corder = fh_udata.lnk->corder;
} /* end if */
else {
HDassert(bt2_udata->idx_type == H5L_INDEX_CRT_ORDER);
/* Set the class of the "other" index */
other_bt2_class = H5G_BT2_NAME;
/* Set up the user data for the v2 B-tree 'record remove' callback */
other_bt2_udata.f = bt2_udata->f;
other_bt2_udata.dxpl_id = bt2_udata->dxpl_id;
other_bt2_udata.fheap = bt2_udata->fheap;
other_bt2_udata.name = fh_udata.lnk->name;
other_bt2_udata.name_hash = H5_checksum_lookup3(fh_udata.lnk->name, HDstrlen(fh_udata.lnk->name), 0);
other_bt2_udata.found_op = NULL;
other_bt2_udata.found_op_data = NULL;
} /* end else */
/* Set the common information for the v2 B-tree remove operation */
/* Remove the record from the name index v2 B-tree */
if(H5B2_remove(bt2_udata->f, bt2_udata->dxpl_id, other_bt2_class, bt2_udata->other_bt2_addr,
&other_bt2_udata, NULL, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, H5_ITER_ERROR, "unable to remove link from creation order index v2 B-tree")
} /* end if */
/* Replace open objects' names */
if(H5G_link_name_replace(bt2_udata->f, bt2_udata->dxpl_id, bt2_udata->grp_full_path_r, fh_udata.lnk->name, fh_udata.lnk->type, fh_udata.lnk->u.hard.addr) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTRENAME, FAIL, "unable to rename open objects")
/* Perform the deletion action on the link */
/* (call link message "delete" callback directly: *ick* - QAK) */
if(H5O_link_delete(bt2_udata->f, bt2_udata->dxpl_id, fh_udata.lnk, TRUE) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete link")
/* Release the space allocated for the link */
H5O_free(H5O_LINK_ID, fh_udata.lnk);
/* Remove record from fractal heap */
if(H5HF_remove(bt2_udata->fheap, bt2_udata->dxpl_id, heap_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, FAIL, "unable to remove link from fractal heap")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove_by_idx_bt2_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_remove_by_idx
*
* Purpose: Remove a link from the dense storage of a group, according to
* to the offset in an indexed order
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Nov 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_remove_by_idx(H5F_t *f, hid_t dxpl_id, const H5O_linfo_t *linfo,
H5RS_str_t *grp_full_path_r, H5L_index_t idx_type, H5_iter_order_t order,
hsize_t n)
{
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_link_table_t ltable = {0, NULL}; /* Table of links */
const H5B2_class_t *bt2_class = NULL; /* Class of v2 B-tree */
haddr_t bt2_addr; /* Address of v2 B-tree to use for lookup */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_remove_by_idx, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
/* Determine the address of the index to use */
if(idx_type == H5L_INDEX_NAME) {
/* Check if "native" order is OK - since names are hashed, getting them
* in strictly increasing or decreasing order requires building a
* table and sorting it.
*/
if(order == H5_ITER_NATIVE) {
bt2_addr = linfo->name_bt2_addr;
bt2_class = H5G_BT2_NAME;
HDassert(H5F_addr_defined(bt2_addr));
} /* end if */
else
bt2_addr = HADDR_UNDEF;
} /* end if */
else {
HDassert(idx_type == H5L_INDEX_CRT_ORDER);
/* This address may not be defined if creation order is tracked, but
* there's no index on it. If there's no v2 B-tree that indexes
* the links, a table will be built.
*/
bt2_addr = linfo->corder_bt2_addr;
bt2_class = H5G_BT2_CORDER;
} /* end else */
/* If there is an index defined for the field, use it */
if(H5F_addr_defined(bt2_addr)) {
H5G_bt2_ud_rmbi_t udata; /* User data for v2 B-tree record removal */
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Set up the user data for the v2 B-tree 'remove by index' callback */
udata.f = f;
udata.dxpl_id = dxpl_id;
udata.fheap = fheap;
udata.idx_type = idx_type;
udata.other_bt2_addr = idx_type == H5L_INDEX_NAME ? linfo->corder_bt2_addr : linfo->name_bt2_addr;
udata.grp_full_path_r = grp_full_path_r;
/* Remove the record from the name index v2 B-tree */
if(H5B2_remove_by_idx(f, dxpl_id, bt2_class, bt2_addr,
order, n, H5G_dense_remove_by_idx_bt2_cb, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, FAIL, "unable to remove link from indexed v2 B-tree")
} /* end if */
else { /* Otherwise, we need to build a table of the links and sort it */
/* Build the table of links for this group */
if(H5G_dense_build_table(f, dxpl_id, linfo, idx_type, order, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "error building table of links")
/* Check for going out of bounds */
if(n >= ltable.nlinks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "index out of bound")
/* Remove the appropriate link from the dense storage */
if(H5G_dense_remove(f, dxpl_id, linfo, grp_full_path_r, ltable.lnks[n].name) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTREMOVE, FAIL, "unable to remove link from dense storage")
} /* end else */
done:
/* Release resources */
if(fheap && H5HF_close(fheap, dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
if(ltable.lnks && H5G_link_release_table(<able) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, H5G_UNKNOWN, "unable to release link table")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_remove_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5G_dense_delete
*
* Purpose: Delete the dense storage for a group
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Sep 12 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_dense_delete(H5F_t *f, hid_t dxpl_id, H5O_linfo_t *linfo, hbool_t adj_link)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5G_dense_delete, FAIL)
/*
* Check arguments.
*/
HDassert(f);
HDassert(linfo);
/* Check if we are to adjust the ref. count for all the links */
/* (we adjust the ref. count when deleting a group and we _don't_ adjust
* the ref. count when transitioning back to compact storage)
*/
if(adj_link) {
H5HF_t *fheap = NULL; /* Fractal heap handle */
H5G_bt2_ud_rm_t udata; /* User data for v2 B-tree record removal */
/* Open the fractal heap */
if(NULL == (fheap = H5HF_open(f, dxpl_id, linfo->link_fheap_addr)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open fractal heap")
/* Set up the user data for the v2 B-tree 'record remove' callback */
udata.common.f = f;
udata.common.dxpl_id = dxpl_id;
udata.common.fheap = fheap;
udata.common.name = NULL;
udata.common.name_hash = 0;
udata.common.found_op = NULL;
udata.common.found_op_data = NULL;
udata.adj_link = TRUE;
udata.rem_from_fheap = FALSE; /* handled in "bulk" below by deleting entire heap */
udata.rem_from_corder_index = FALSE;
udata.grp_full_path_r = NULL;
udata.replace_names = FALSE;
/* Delete the name index, adjusting the ref. count on links removed */
if(H5B2_delete(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr, H5G_dense_remove_bt2_cb, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete v2 B-tree for name index")
/* Close the fractal heap */
if(H5HF_close(fheap, dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close fractal heap")
} /* end if */
else {
/* Delete the name index, without adjusting the ref. count on the links */
if(H5B2_delete(f, dxpl_id, H5G_BT2_NAME, linfo->name_bt2_addr, NULL, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete v2 B-tree for name index")
} /* end else */
linfo->name_bt2_addr = HADDR_UNDEF;
/* Check if we should delete the creation order index v2 B-tree */
if(linfo->index_corder) {
/* Delete the creation order index, without adjusting the ref. count on the links */
HDassert(H5F_addr_defined(linfo->corder_bt2_addr));
if(H5B2_delete(f, dxpl_id, H5G_BT2_CORDER, linfo->corder_bt2_addr, NULL, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete v2 B-tree for creation order index")
} /* end if */
/* Delete the fractal heap */
if(H5HF_delete(f, dxpl_id, linfo->link_fheap_addr) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete fractal heap")
linfo->link_fheap_addr = HADDR_UNDEF;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_dense_delete() */
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