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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Gobj.c
*
* Purpose: Functions for abstract handling of objects in groups.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#include "H5Gmodule.h" /* This source code file is part of the H5G module */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fprivate.h" /* File access */
#include "H5Gpkg.h" /* Groups */
#include "H5Iprivate.h" /* IDs */
#include "H5Lprivate.h" /* Links */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property Lists */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/* User data for object header iterator when converting link messages to dense
* link storage
*/
typedef struct {
H5F_t *f; /* Pointer to file for insertion */
haddr_t oh_addr; /* Address of the object header */
H5O_linfo_t *linfo; /* Pointer to link info */
} H5G_obj_oh_it_ud1_t;
/* User data for link iterator when converting dense link storage to link
* messages
*/
typedef struct {
H5O_link_t *lnk_table; /* Array of links to convert */
size_t nlinks; /* Number of links converted */
size_t alloc_links; /* Size of link table */
} H5G_obj_lnk_it_ud1_t;
/* User data for symbol table iterator when converting old-format group to
* a new-format group
*/
typedef struct {
const H5O_loc_t *grp_oloc; /* Pointer to group for insertion */
} H5G_obj_stab_it_ud1_t;
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static herr_t H5G__obj_compact_to_dense_cb(const void *_mesg, unsigned idx, void *_udata);
static herr_t H5G__obj_remove_update_linfo(const H5O_loc_t *oloc, H5O_linfo_t *linfo);
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5G__obj_create
*
* Purpose: Create an object header for a group and update object location info
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G__obj_create(H5F_t *f, H5G_obj_create_t *gcrt_info, H5O_loc_t *oloc /*out*/)
{
H5P_genplist_t *gc_plist; /* Group creation property list */
H5O_ginfo_t ginfo; /* Group info */
H5O_linfo_t linfo; /* Link info */
H5O_pline_t pline; /* Pipeline */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/*
* Check arguments.
*/
assert(f);
assert(oloc);
/* Get the property list */
if (NULL == (gc_plist = (H5P_genplist_t *)H5I_object(gcrt_info->gcpl_id)))
HGOTO_ERROR(H5E_SYM, H5E_BADTYPE, FAIL, "not a property list");
/* Get the group info property */
if (H5P_get(gc_plist, H5G_CRT_GROUP_INFO_NAME, &ginfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get group info");
/* Get the link info property */
if (H5P_get(gc_plist, H5G_CRT_LINK_INFO_NAME, &linfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get group info");
/* Get the pipeline property */
if (H5P_peek(gc_plist, H5O_CRT_PIPELINE_NAME, &pline) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't get group info");
/* Call the "real" group creation routine now */
if (H5G__obj_create_real(f, &ginfo, &linfo, &pline, gcrt_info, oloc) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTCREATE, FAIL, "unable to create group");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_create() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_create_real
*
* Purpose: Create an object header for a group and update object location info
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G__obj_create_real(H5F_t *f, const H5O_ginfo_t *ginfo, const H5O_linfo_t *linfo, const H5O_pline_t *pline,
H5G_obj_create_t *gcrt_info, H5O_loc_t *oloc /*out*/)
{
size_t hdr_size; /* Size of object header to request */
bool use_at_least_v18; /* Flag indicating the new group format should be used */
hid_t gcpl_id = gcrt_info->gcpl_id; /* Group creation property list ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/*
* Check arguments.
*/
assert(f);
assert(ginfo);
assert(linfo);
assert(pline);
assert(oloc);
/* Check for invalid access request */
if (0 == (H5F_INTENT(f) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_CACHE, H5E_BADVALUE, FAIL, "no write intent on file");
/* Check for using the latest version of the group format which is introduced in v18 */
/* (add more checks for creating "new format" groups when needed) */
if ((H5F_LOW_BOUND(f) >= H5F_LIBVER_V18) || linfo->track_corder || (pline && pline->nused))
use_at_least_v18 = true;
else
use_at_least_v18 = false;
/* Make certain that the creation order is being tracked if an index is
* going to be built on it.
*/
if (linfo->index_corder && !linfo->track_corder)
HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "must track creation order to create index for it");
/* Check if we should be using the latest version of the group format */
if (use_at_least_v18) {
H5O_link_t lnk; /* Temporary link message info for computing message size */
char null_char = '\0'; /* Character for creating null string */
size_t ginfo_size; /* Size of the group info message */
size_t linfo_size; /* Size of the link info message */
size_t pline_size = 0; /* Size of the pipeline message */
size_t link_size; /* Size of a link message */
/* Calculate message size information, for creating group's object header */
linfo_size = H5O_msg_size_f(f, gcpl_id, H5O_LINFO_ID, linfo, (size_t)0);
assert(linfo_size);
ginfo_size = H5O_msg_size_f(f, gcpl_id, H5O_GINFO_ID, ginfo, (size_t)0);
assert(ginfo_size);
if (pline && pline->nused) {
pline_size = H5O_msg_size_f(f, gcpl_id, H5O_PLINE_ID, pline, (size_t)0);
assert(pline_size);
} /* end if */
lnk.type = H5L_TYPE_HARD;
lnk.corder = 0;
lnk.corder_valid = linfo->track_corder;
lnk.cset = H5T_CSET_ASCII;
lnk.name = &null_char;
link_size = H5O_msg_size_f(f, gcpl_id, H5O_LINK_ID, &lnk, (size_t)ginfo->est_name_len);
assert(link_size);
/* Compute size of header to use for creation */
/* Basic header size */
hdr_size = linfo_size + ginfo_size + pline_size;
/* If this is likely to be a compact group, add space for the link
* messages, unless the size of the link messages is greater than
* the largest allowable object header message size, since the size
* of the link messages is the size of the NIL spacer message that
* would have to be written out to reserve enough space to hold the
* links if the group were left empty.
*/
bool compact = ginfo->est_num_entries <= ginfo->max_compact;
if (compact) {
size_t size_of_links = ginfo->est_num_entries * link_size;
if (size_of_links < H5O_MESG_MAX_SIZE)
hdr_size += size_of_links;
}
} /* end if */
else
hdr_size = (size_t)(4 + 2 * H5F_SIZEOF_ADDR(f));
/*
* Create group's object header. It has a zero link count
* since nothing refers to it yet. The link count will be
* incremented if the object is added to the group directed graph.
*/
if (H5O_create(f, hdr_size, (size_t)1, gcpl_id, oloc /*out*/) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create header");
/* Check for format of group to create */
if (use_at_least_v18) {
H5_GCC_CLANG_DIAG_OFF("cast-qual")
/* Insert link info message */
if (H5O_msg_create(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, (void *)linfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
/* Insert group info message */
if (H5O_msg_create(oloc, H5O_GINFO_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)ginfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
/* Insert pipeline message */
if (pline && pline->nused)
if (H5O_msg_create(oloc, H5O_PLINE_ID, H5O_MSG_FLAG_CONSTANT, 0, (void *)pline) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
H5_GCC_CLANG_DIAG_ON("cast-qual")
} /* end if */
else {
H5O_stab_t stab; /* Symbol table message */
/* The group doesn't currently have a 'stab' message, go create one */
if (H5G__stab_create(oloc, ginfo, &stab) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create symbol table");
/* Cache the symbol table information */
gcrt_info->cache_type = H5G_CACHED_STAB;
gcrt_info->cache.stab.btree_addr = stab.btree_addr;
gcrt_info->cache.stab.heap_addr = stab.heap_addr;
} /* end else */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_create_real() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_get_linfo
*
* Purpose: Retrieves the "link info" message for an object. Also
* sets the number of links correctly, if it isn't set up yet.
*
* Return: Success: true/false whether message was found & retrieved
* Failure: FAIL if error occurred
*
*-------------------------------------------------------------------------
*/
htri_t
H5G__obj_get_linfo(const H5O_loc_t *grp_oloc, H5O_linfo_t *linfo)
{
H5B2_t *bt2_name = NULL; /* v2 B-tree handle for name index */
htri_t ret_value = FAIL; /* Return value */
FUNC_ENTER_PACKAGE_TAG(grp_oloc->addr)
/* check arguments */
assert(grp_oloc);
assert(linfo);
/* Check for the group having a link info message */
if ((ret_value = H5O_msg_exists(grp_oloc, H5O_LINFO_ID)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to read object header");
if (ret_value) {
/* Retrieve the "link info" structure */
if (NULL == H5O_msg_read(grp_oloc, H5O_LINFO_ID, linfo))
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "link info message not present");
/* Check if we don't know how many links there are */
if (linfo->nlinks == HSIZET_MAX) {
/* Check if we are using "dense" link storage */
if (H5_addr_defined(linfo->fheap_addr)) {
/* Open the name index v2 B-tree */
if (NULL == (bt2_name = H5B2_open(grp_oloc->file, linfo->name_bt2_addr, NULL)))
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open v2 B-tree for name index");
/* Retrieve # of records in "name" B-tree */
/* (should be same # of records in all indices) */
if (H5B2_get_nrec(bt2_name, &linfo->nlinks) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve # of records in index");
} /* end if */
else {
/* Retrieve # of links from object header */
if (H5O_get_nlinks(grp_oloc, &linfo->nlinks) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve # of links for object");
} /* end if */
} /* end if */
} /* end if */
done:
/* Release resources */
if (bt2_name && H5B2_close(bt2_name) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "can't close v2 B-tree for name index");
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G__obj_get_linfo() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_compact_to_dense_cb
*
* Purpose: Callback routine for converting "compact" to "dense"
* link storage form.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G__obj_compact_to_dense_cb(const void *_mesg, unsigned H5_ATTR_UNUSED idx, void *_udata)
{
const H5O_link_t *lnk = (const H5O_link_t *)_mesg; /* Pointer to link */
H5G_obj_oh_it_ud1_t *udata = (H5G_obj_oh_it_ud1_t *)_udata; /* 'User data' passed in */
herr_t ret_value = H5_ITER_CONT; /* Return value */
FUNC_ENTER_PACKAGE
/* check arguments */
assert(lnk);
assert(udata);
/* Insert link into dense link storage */
if (H5G__dense_insert(udata->f, udata->linfo, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert link into dense storage");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_compact_to_dense_cb() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_stab_to_new_cb
*
* Purpose: Callback routine for converting "symbol table" link storage to
* "new format" storage (either "compact" or "dense" storage).
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G__obj_stab_to_new_cb(const H5O_link_t *lnk, void *_udata)
{
H5G_obj_stab_it_ud1_t *udata = (H5G_obj_stab_it_ud1_t *)_udata; /* 'User data' passed in */
herr_t ret_value = H5_ITER_CONT; /* Return value */
FUNC_ENTER_PACKAGE
/* check arguments */
assert(lnk);
assert(udata);
/* Insert link into group */
H5_GCC_CLANG_DIAG_OFF("cast-qual")
if (H5G_obj_insert(udata->grp_oloc, lnk->name, (H5O_link_t *)lnk, false, H5O_TYPE_UNKNOWN, NULL) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, H5_ITER_ERROR, "can't insert link into group");
H5_GCC_CLANG_DIAG_ON("cast-qual")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_stab_to_new_cb() */
/*-------------------------------------------------------------------------
* Function: H5G_obj_insert
*
* Purpose: Insert a new symbol into the group described by GRP_OLOC.
* file F. The name of the new symbol is NAME and its symbol
* table entry is OBJ_LNK. Increment the reference
* count for the object the link points if OBJ_LNK is a hard link
* and ADJ_LINK is true.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_obj_insert(const H5O_loc_t *grp_oloc, const char *name, H5O_link_t *obj_lnk, bool adj_link,
H5O_type_t obj_type, const void *crt_info)
{
H5O_pline_t tmp_pline; /* Pipeline message */
H5O_pline_t *pline = NULL; /* Pointer to pipeline message */
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
bool use_old_format; /* Whether to use 'old format' (symbol table) for insertions or not */
bool use_new_dense = false; /* Whether to use "dense" form of 'new format' group */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_TAG(grp_oloc->addr, FAIL)
/* check arguments */
assert(grp_oloc && grp_oloc->file);
assert(name && *name);
assert(obj_lnk);
/* Check if we have information about the number of objects in this group */
/* (by attempting to get the link info message for this group) */
if ((linfo_exists = H5G__obj_get_linfo(grp_oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
H5O_ginfo_t ginfo; /* Group info message */
size_t link_msg_size; /* Size of new link message in the file */
/* Using the new format for groups */
use_old_format = false;
/* Check for tracking creation order on this group's links */
if (linfo.track_corder) {
/* Set the creation order for the new link & indicate that it's valid */
obj_lnk->corder = linfo.max_corder;
obj_lnk->corder_valid = true;
/* Increment the max. creation order used in the group */
linfo.max_corder++;
} /* end if */
/* Get the link's message size */
if ((link_msg_size = H5O_msg_raw_size(grp_oloc->file, H5O_LINK_ID, false, obj_lnk)) == 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGETSIZE, FAIL, "can't get link size");
/* Get the group info */
if (NULL == H5O_msg_read(grp_oloc, H5O_GINFO_ID, &ginfo))
HGOTO_ERROR(H5E_SYM, H5E_BADMESG, FAIL, "can't get group info");
/* If there's still a small enough number of links, use the 'link' message */
/* (If the encoded form of the link is too large to fit into an object
* header message, convert to using dense link storage instead of link messages)
*/
if (H5_addr_defined(linfo.fheap_addr))
use_new_dense = true;
else if (linfo.nlinks < ginfo.max_compact && link_msg_size < H5O_MESG_MAX_SIZE)
use_new_dense = false;
else {
htri_t pline_exists; /* Whether the pipeline message exists */
H5G_obj_oh_it_ud1_t udata; /* User data for iteration */
H5O_mesg_operator_t op; /* Message operator */
/* Get the pipeline message, if it exists */
if ((pline_exists = H5O_msg_exists(grp_oloc, H5O_PLINE_ID)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to read object header");
if (pline_exists) {
if (NULL == H5O_msg_read(grp_oloc, H5O_PLINE_ID, &tmp_pline))
HGOTO_ERROR(H5E_SYM, H5E_BADMESG, FAIL, "can't get link pipeline");
pline = &tmp_pline;
} /* end if */
/* The group doesn't currently have "dense" storage for links */
if (H5G__dense_create(grp_oloc->file, &linfo, pline) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create 'dense' form of new format group");
/* Set up user data for object header message iteration */
udata.f = grp_oloc->file;
udata.oh_addr = grp_oloc->addr;
udata.linfo = &linfo;
/* Iterate over the 'link' messages, inserting them into the dense link storage */
op.op_type = H5O_MESG_OP_APP;
op.u.app_op = H5G__obj_compact_to_dense_cb;
if (H5O_msg_iterate(grp_oloc, H5O_LINK_ID, &op, &udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "error iterating over links");
/* Remove all the 'link' messages */
if (H5O_msg_remove(grp_oloc, H5O_LINK_ID, H5O_ALL, false) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete link messages");
use_new_dense = true;
} /* end else */
} /* end if */
else {
/* Check for new-style link information */
if (obj_lnk->cset != H5T_CSET_ASCII || obj_lnk->type > H5L_TYPE_BUILTIN_MAX) {
H5O_linfo_t new_linfo = H5G_CRT_LINK_INFO_DEF; /* Link information */
H5O_ginfo_t new_ginfo = H5G_CRT_GROUP_INFO_DEF; /* Group information */
H5G_obj_stab_it_ud1_t udata; /* User data for iteration */
/* Convert group to "new format" group, in order to hold the information */
/* Insert link info message */
if (H5O_msg_create(grp_oloc, H5O_LINFO_ID, 0, 0, &new_linfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
/* Insert group info message */
if (H5O_msg_create(grp_oloc, H5O_GINFO_ID, H5O_MSG_FLAG_CONSTANT, H5O_UPDATE_TIME, &new_ginfo) <
0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
/* Set up user data for iteration */
udata.grp_oloc = grp_oloc;
/* Iterate through all links in "old format" group and insert them into new format */
if (H5G__stab_iterate(grp_oloc, H5_ITER_NATIVE, (hsize_t)0, NULL, H5G__obj_stab_to_new_cb,
&udata) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTNEXT, FAIL, "error iterating over old format links");
/* Remove the symbol table message from the group */
if (H5O_msg_remove(grp_oloc, H5O_STAB_ID, 0, false) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete old format link storage");
/* Recursively call this routine to insert the new link, since the
* group is in the "new format" now and the link info should be
* set up, etc.
*/
if (H5G_obj_insert(grp_oloc, name, obj_lnk, adj_link, obj_type, crt_info) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert link into group");
/* Done with insertion now */
HGOTO_DONE(SUCCEED);
} /* end if */
else
use_old_format = true;
} /* end if */
/* Insert into symbol table or "dense" storage */
if (use_old_format) {
/* Insert into symbol table */
if (H5G__stab_insert(grp_oloc, name, obj_lnk, obj_type, crt_info) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert entry into symbol table");
} /* end if */
else {
if (use_new_dense) {
/* Insert into dense link storage */
if (H5G__dense_insert(grp_oloc->file, &linfo, obj_lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert link into dense storage");
} /* end if */
else {
/* Insert with link message */
if (H5G__compact_insert(grp_oloc, obj_lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTINSERT, FAIL, "unable to insert link as link message");
} /* end else */
} /* end else */
/* Increment the number of objects in this group */
if (!use_old_format) {
linfo.nlinks++;
if (H5O_msg_write(grp_oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, &linfo) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't update link info message");
} /* end if */
/* Increment link count on object, if requested and it's a hard link */
if (adj_link && obj_lnk->type == H5L_TYPE_HARD) {
H5O_loc_t obj_oloc; /* Object location */
H5O_loc_reset(&obj_oloc);
/* Create temporary object location */
obj_oloc.file = grp_oloc->file;
obj_oloc.addr = obj_lnk->u.hard.addr;
/* Increment reference count for object */
if (H5O_link(&obj_oloc, 1) < 0)
HGOTO_ERROR(H5E_SYM, H5E_LINKCOUNT, FAIL, "unable to increment hard link count");
} /* end if */
done:
/* Free any space used by the pipeline message */
if (pline && H5O_msg_reset(H5O_PLINE_ID, pline) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTFREE, FAIL, "can't release pipeline");
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G_obj_insert() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_iterate
*
* Purpose: Private function for H5Giterate.
* Iterates over objects in a group
*
* Return: Success: Non-negative
*
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
herr_t
H5G__obj_iterate(const H5O_loc_t *grp_oloc, H5_index_t idx_type, H5_iter_order_t order, hsize_t skip,
hsize_t *last_lnk, H5G_lib_iterate_t op, void *op_data)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
herr_t ret_value = FAIL; /* Return value */
FUNC_ENTER_PACKAGE_TAG(grp_oloc->addr)
/* Sanity check */
assert(grp_oloc);
assert(op);
/* Attempt to get the link info for this group */
if ((linfo_exists = H5G__obj_get_linfo(grp_oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Check for going out of bounds */
if (skip > 0 && (size_t)skip >= linfo.nlinks)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "index out of bound");
/* Check for creation order tracking, if creation order index lookup requested */
if (idx_type == H5_INDEX_CRT_ORDER) {
/* Check if creation order is tracked */
if (!linfo.track_corder)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "creation order not tracked for links in group");
} /* end if */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Iterate over the links in the group, building a table of the link messages */
if ((ret_value = H5G__dense_iterate(grp_oloc->file, &linfo, idx_type, order, skip, last_lnk, op,
op_data)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "can't iterate over dense links");
} /* end if */
else {
/* Get the object's name from the link messages */
if ((ret_value = H5G__compact_iterate(grp_oloc, &linfo, idx_type, order, skip, last_lnk, op,
op_data)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "can't iterate over compact links");
} /* end else */
} /* end if */
else {
/* Can only perform name lookups on groups with symbol tables */
if (idx_type != H5_INDEX_NAME)
HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no creation order index to query");
/* Iterate over symbol table */
if ((ret_value = H5G__stab_iterate(grp_oloc, order, skip, last_lnk, op, op_data)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_BADITER, FAIL, "can't iterate over symbol table");
} /* end else */
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G__obj_iterate() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_info
*
* Purpose: Retrieve information about a group
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G__obj_info(const H5O_loc_t *oloc, H5G_info_t *grp_info)
{
H5G_t *grp = NULL; /* Group to query */
H5G_loc_t grp_loc; /* Entry of group to be queried */
H5G_name_t grp_path; /* Group hier. path */
H5O_loc_t grp_oloc; /* Group object location */
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Sanity check */
assert(oloc);
assert(grp_info);
/* Set up group location to fill in */
grp_loc.oloc = &grp_oloc;
grp_loc.path = &grp_path;
H5G_loc_reset(&grp_loc);
/* Deep copy (duplicate) of the group location object */
if (H5O_loc_copy_deep(&grp_oloc, oloc) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTCOPY, FAIL, "can't copy object location");
/* Open the group */
if (NULL == (grp = H5G_open(&grp_loc)))
HGOTO_ERROR(H5E_FILE, H5E_MOUNT, FAIL, "mount point not found");
/* Get information from the group */
grp_info->mounted = H5G_MOUNTED(grp);
/* Attempt to get the link info for this group */
if ((linfo_exists = H5G__obj_get_linfo(oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Retrieve the information about the links */
grp_info->nlinks = linfo.nlinks;
grp_info->max_corder = linfo.max_corder;
/* Check if the group is using compact or dense storage for its links */
if (H5_addr_defined(linfo.fheap_addr))
grp_info->storage_type = H5G_STORAGE_TYPE_DENSE;
else
grp_info->storage_type = H5G_STORAGE_TYPE_COMPACT;
} /* end if */
else {
/* Get the number of objects in this group by iterating over symbol table */
if (H5G__stab_count(oloc, &grp_info->nlinks) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTCOUNT, FAIL, "can't count objects");
/* Set the other information about the group */
grp_info->storage_type = H5G_STORAGE_TYPE_SYMBOL_TABLE;
grp_info->max_corder = 0;
} /* end else */
done:
/* Clean up resources */
if (grp && H5G_close(grp) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTCLOSEOBJ, FAIL, "unable to close queried group");
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_info() */
/*-------------------------------------------------------------------------
* Function: H5G_obj_get_name_by_idx
*
* Purpose: Returns the name of link in a group by giving index.
*
* Return: Success: Non-negative, length of name
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_obj_get_name_by_idx(const H5O_loc_t *oloc, H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
char *name, size_t name_size, size_t *name_len)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_TAG(oloc->addr, FAIL)
/* Sanity check */
assert(oloc && oloc->file);
/* Attempt to get the link info for this group */
if ((linfo_exists = H5G__obj_get_linfo(oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Check for creation order tracking, if creation order index lookup requested */
if (idx_type == H5_INDEX_CRT_ORDER)
/* Check if creation order is tracked */
if (!linfo.track_corder)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "creation order not tracked for links in group");
/* Check for dense link storage */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Get the object's name from the dense link storage */
if (H5G__dense_get_name_by_idx(oloc->file, &linfo, idx_type, order, n, name, name_size,
name_len) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate name");
} /* end if */
else {
/* Get the object's name from the link messages */
if (H5G__compact_get_name_by_idx(oloc, &linfo, idx_type, order, n, name, name_size, name_len) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate name");
} /* end else */
} /* end if */
else {
/* Can only perform name lookups on groups with symbol tables */
if (idx_type != H5_INDEX_NAME)
HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no creation order index to query");
/* Get the object's name from the symbol table */
if (H5G__stab_get_name_by_idx(oloc, order, n, name, name_size, name_len) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate name");
} /* end else */
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G_obj_get_name_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_remove_update_linfo
*
* Purpose: Update the link info after removing a link from a group
*
* Return: Success: Non-negative
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
static herr_t
H5G__obj_remove_update_linfo(const H5O_loc_t *oloc, H5O_linfo_t *linfo)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Sanity check */
assert(oloc);
assert(linfo);
/* Decrement # of links in group */
linfo->nlinks--;
/* Reset the creation order min/max if there's no more links in group */
if (linfo->nlinks == 0)
linfo->max_corder = 0;
/* Check for transitioning out of dense storage, if we are using it */
if (H5_addr_defined(linfo->fheap_addr)) {
/* Check if there's no more links */
if (linfo->nlinks == 0) {
/* Delete the dense storage */
if (H5G__dense_delete(oloc->file, linfo, false) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete dense link storage");
} /* end if */
/* Check for switching back to compact storage */
else {
H5O_ginfo_t ginfo; /* Group info message */
/* Get the group info */
if (NULL == H5O_msg_read(oloc, H5O_GINFO_ID, &ginfo))
HGOTO_ERROR(H5E_SYM, H5E_BADMESG, FAIL, "can't get group info");
/* Check if we should switch from dense storage back to link messages */
if (linfo->nlinks < ginfo.min_dense) {
struct H5O_t *oh = NULL; /* Pointer to group's object header */
H5G_link_table_t ltable; /* Table of links */
bool can_convert = true; /* Whether converting to link messages is possible */
size_t u; /* Local index */
/* Build the table of links for this group */
if (H5G__dense_build_table(oloc->file, linfo, H5_INDEX_NAME, H5_ITER_NATIVE, <able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTNEXT, FAIL, "error iterating over links");
/* Pin the object header */
if (NULL == (oh = H5O_pin(oloc)))
HGOTO_ERROR(H5E_SYM, H5E_CANTPIN, FAIL, "unable to pin group object header");
/* Inspect links in table for ones that can't be converted back
* into link message form (currently only links which can't fit
* into an object header message)
*/
for (u = 0; u < linfo->nlinks; u++)
if (H5O_msg_size_oh(oloc->file, oh, H5O_LINK_ID, &(ltable.lnks[u]), (size_t)0) >=
H5O_MESG_MAX_SIZE) {
can_convert = false;
break;
} /* end if */
/* If ok, insert links as link messages */
if (can_convert) {
/* Insert link messages into group */
for (u = 0; u < linfo->nlinks; u++)
if (H5O_msg_append_oh(oloc->file, oh, H5O_LINK_ID, 0, H5O_UPDATE_TIME,
&(ltable.lnks[u])) < 0) {
/* Release object header */
if (H5O_unpin(oh) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTUNPIN, FAIL,
"unable to unpin group object header");
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "can't create message");
} /* end if */
/* Remove the dense storage */
if (H5G__dense_delete(oloc->file, linfo, false) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTDELETE, FAIL, "unable to delete dense link storage");
} /* end if */
/* Release object header */
if (H5O_unpin(oh) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTUNPIN, FAIL, "unable to unpin group object header");
/* Free link table information */
if (H5G__link_release_table(<able) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTFREE, FAIL, "unable to release link table");
} /* end if */
} /* end else */
} /* end if */
/* Update link info in the object header */
if (H5O_msg_write(oloc, H5O_LINFO_ID, 0, H5O_UPDATE_TIME, linfo) < 0)
HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "can't update link info message");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G__obj_remove_update_linfo() */
/*-------------------------------------------------------------------------
* Function: H5G_obj_remove
*
* Purpose: Remove a link from a group.
*
* Return: Success: Non-negative
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_obj_remove(const H5O_loc_t *oloc, H5RS_str_t *grp_full_path_r, const char *name)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
bool use_old_format; /* Whether to use 'old format' (symbol table) for deletion or not */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_TAG(oloc->addr, FAIL)
/* Sanity check */
assert(oloc);
assert(name && *name);
/* Attempt to get the link info for this group */
if ((linfo_exists = H5G__obj_get_linfo(oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Using the new format for groups */
use_old_format = false;
/* Check for dense or compact storage */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Remove object from the dense link storage */
if (H5G__dense_remove(oloc->file, &linfo, grp_full_path_r, name) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end if */
else
/* Remove object from the link messages */
if (H5G__compact_remove(oloc, grp_full_path_r, name) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end if */
else {
/* Using the old format for groups */
use_old_format = true;
/* Remove object from the symbol table */
if (H5G__stab_remove(oloc, grp_full_path_r, name) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end else */
/* Update link info for a new-style group */
if (!use_old_format)
if (H5G__obj_remove_update_linfo(oloc, &linfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTUPDATE, FAIL, "unable to update link info");
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G_obj_remove() */
/*-------------------------------------------------------------------------
* Function: H5G_obj_remove_by_idx
*
* Purpose: Remove a link from a group, according to the order within an index.
*
* Return: Success: Non-negative
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_obj_remove_by_idx(const H5O_loc_t *grp_oloc, H5RS_str_t *grp_full_path_r, H5_index_t idx_type,
H5_iter_order_t order, hsize_t n)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
bool use_old_format; /* Whether to use 'old format' (symbol table) for deletion or not */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity check */
assert(grp_oloc && grp_oloc->file);
/* Attempt to get the link info for this group */
if ((linfo_exists = H5G__obj_get_linfo(grp_oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Check for creation order tracking, if creation order index lookup requested */
if (idx_type == H5_INDEX_CRT_ORDER) {
/* Check if creation order is tracked */
if (!linfo.track_corder)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "creation order not tracked for links in group");
} /* end if */
/* Using the new format for groups */
use_old_format = false;
/* Check for dense or compact storage */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Remove object from the dense link storage */
if (H5G__dense_remove_by_idx(grp_oloc->file, &linfo, grp_full_path_r, idx_type, order, n) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end if */
else {
/* Remove object from compact link storage */
if (H5G__compact_remove_by_idx(grp_oloc, &linfo, grp_full_path_r, idx_type, order, n) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end else */
} /* end if */
else {
/* Can only perform name lookups on groups with symbol tables */
if (idx_type != H5_INDEX_NAME)
HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no creation order index to query");
/* Using the old format for groups */
use_old_format = true;
/* Remove object from the symbol table */
if (H5G__stab_remove_by_idx(grp_oloc, grp_full_path_r, order, n) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't remove object");
} /* end else */
/* Update link info for a new-style group */
if (!use_old_format)
if (H5G__obj_remove_update_linfo(grp_oloc, &linfo) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTUPDATE, FAIL, "unable to update link info");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5G_obj_remove() */
/*-------------------------------------------------------------------------
* Function: H5G__obj_lookup
*
* Purpose: Look up a link in a group, using the name as the key.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G__obj_lookup(const H5O_loc_t *grp_oloc, const char *name, bool *found, H5O_link_t *lnk)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE_TAG(grp_oloc->addr)
/* check arguments */
assert(grp_oloc && grp_oloc->file);
assert(name && *name);
/* Attempt to get the link info message for this group */
if ((linfo_exists = H5G__obj_get_linfo(grp_oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Check for dense link storage */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Get the object's info from the dense link storage */
if (H5G__dense_lookup(grp_oloc->file, &linfo, name, found, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
} /* end if */
else {
/* Get the object's info from the link messages */
if (H5G__compact_lookup(grp_oloc, name, found, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
} /* end else */
} /* end if */
else
/* Get the object's info from the symbol table */
if (H5G__stab_lookup(grp_oloc, name, found, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G__obj_lookup() */
/*-------------------------------------------------------------------------
* Function: H5G_obj_lookup_by_idx
*
* Purpose: Look up link info in a group, according to an order within an
* index.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5G_obj_lookup_by_idx(const H5O_loc_t *grp_oloc, H5_index_t idx_type, H5_iter_order_t order, hsize_t n,
H5O_link_t *lnk)
{
H5O_linfo_t linfo; /* Link info message */
htri_t linfo_exists; /* Whether the link info message exists */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_TAG(grp_oloc->addr, FAIL)
/* check arguments */
assert(grp_oloc && grp_oloc->file);
/* Attempt to get the link info message for this group */
if ((linfo_exists = H5G__obj_get_linfo(grp_oloc, &linfo)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't check for link info message");
if (linfo_exists) {
/* Check for creation order tracking, if creation order index lookup requested */
if (idx_type == H5_INDEX_CRT_ORDER) {
/* Check if creation order is tracked */
if (!linfo.track_corder)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "creation order not tracked for links in group");
} /* end if */
/* Check for dense link storage */
if (H5_addr_defined(linfo.fheap_addr)) {
/* Get the link from the dense storage */
if (H5G__dense_lookup_by_idx(grp_oloc->file, &linfo, idx_type, order, n, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
} /* end if */
else {
/* Get the link from the link messages */
if (H5G__compact_lookup_by_idx(grp_oloc, &linfo, idx_type, order, n, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
} /* end else */
} /* end if */
else {
/* Can only perform name lookups on groups with symbol tables */
if (idx_type != H5_INDEX_NAME)
HGOTO_ERROR(H5E_SYM, H5E_BADVALUE, FAIL, "no creation order index to query");
/* Get the object's info from the symbol table */
if (H5G__stab_lookup_by_idx(grp_oloc, order, n, lnk) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "can't locate object");
} /* end else */
done:
FUNC_LEAVE_NOAPI_TAG(ret_value)
} /* end H5G_obj_lookup_by_idx() */
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