1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
|
/*-------------------------------------------------------------------------
* Copyright (C) 1997 National Center for Supercomputing Applications.
* All rights reserved.
*
*-------------------------------------------------------------------------
*
* Created: H5H.c
* Jul 16 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Heap functions for the global small object heap
* and for local symbol table name heaps.
*
* Modifications:
*
* Robb Matzke, 5 Aug 1997
* Added calls to H5E.
*
*-------------------------------------------------------------------------
*/
#include <H5private.h> /*library */
#include <H5ACprivate.h> /*cache */
#include <H5Eprivate.h> /*error handling */
#include <H5Hprivate.h> /*self */
#include <H5MFprivate.h> /*file memory management */
#include <H5MMprivate.h> /*core memory management */
#define H5H_FREE_NULL 1 /*end of free list on disk */
#define PABLO_MASK H5H_mask
typedef struct H5H_free_t {
size_t offset; /*offset of free block */
size_t size; /*size of free block */
struct H5H_free_t *prev; /*previous entry in free list */
struct H5H_free_t *next; /*next entry in free list */
} H5H_free_t;
typedef struct H5H_t {
intn dirty;
haddr_t addr; /*address of data */
size_t disk_alloc; /*data bytes allocated on disk */
size_t mem_alloc; /*data bytes allocated in mem */
uint8 *chunk; /*the chunk, including header */
H5H_free_t *freelist; /*the free list */
} H5H_t;
/* PRIVATE PROTOTYPES */
static H5H_t *H5H_load (H5F_t *f, const haddr_t *addr, const void *udata1,
void *udata2);
static herr_t H5H_flush (H5F_t *f, hbool_t dest, const haddr_t *addr,
H5H_t *heap);
/*
* H5H inherits cache-like properties from H5AC
*/
static const H5AC_class_t H5AC_HEAP[1] = {{
H5AC_HEAP_ID,
(void*(*)(H5F_t*,const haddr_t*,const void*,void*))H5H_load,
(herr_t(*)(H5F_t*,hbool_t,const haddr_t*,void*))H5H_flush,
}};
/* Interface initialization */
static intn interface_initialize_g = FALSE;
#define INTERFACE_INIT NULL
/*-------------------------------------------------------------------------
* Function: H5H_create
*
* Purpose: Creates a new heap data structure on disk and caches it
* in memory. SIZE_HINT is a hint for the initial size of the
* data area of the heap. If size hint is invalid then a
* reasonable (but probably not optimal) size will be chosen.
* If the heap ever has to grow, then REALLOC_HINT is the
* minimum amount by which the heap will grow.
*
* Return: Success: SUCCEED. The file address of new heap is
* returned through the ADDR argument.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 16 1997
*
* Modifications:
*
* Robb Matzke, 5 Aug 1997
* Takes a flag that determines the type of heap that is
* created.
*
*-------------------------------------------------------------------------
*/
herr_t
H5H_create (H5F_t *f, H5H_type_t heap_type, size_t size_hint,
haddr_t *addr/*out*/)
{
H5H_t *heap = NULL;
size_t total_size; /*total heap size on disk */
FUNC_ENTER (H5H_create, FAIL);
/* check arguments */
assert (f);
assert (addr);
if (H5H_GLOBAL==heap_type) {
#ifndef NDEBUG
fprintf (stderr, "H5H_create: a local heap is used as the global heap\n");
#endif
}
size_hint = MAX (0, size_hint);
if (size_hint && size_hint<H5H_SIZEOF_FREE(f)) {
size_hint = H5H_SIZEOF_FREE(f);
}
/* allocate file version */
total_size = H5H_SIZEOF_HDR(f) + size_hint;
if (H5MF_alloc (f, H5MF_META, total_size, addr/*out*/)<0) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL,
"unable to allocate file memory");
}
/* allocate memory version */
heap = H5MM_xcalloc (1, sizeof(H5H_t));
heap->addr = *addr;
H5F_addr_inc (&(heap->addr), H5H_SIZEOF_HDR (f));
heap->disk_alloc = size_hint;
heap->mem_alloc = size_hint;
heap->chunk = H5MM_xcalloc (1, H5H_SIZEOF_HDR(f)+size_hint);
/* free list */
if (size_hint) {
heap->freelist = H5MM_xmalloc (sizeof(H5H_free_t));
heap->freelist->offset = 0;
heap->freelist->size = size_hint;
heap->freelist->prev = heap->freelist->next = NULL;
} else {
heap->freelist = NULL;
}
/* add to cache */
heap->dirty = 1;
if (H5AC_set (f, H5AC_HEAP, addr, heap)<0) {
heap->chunk = H5MM_xfree (heap->chunk);
heap->freelist = H5MM_xfree (heap->freelist);
HRETURN_ERROR (H5E_HEAP, H5E_CANTINIT, FAIL,
"unable to cache heap");
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5H_load
*
* Purpose: Loads a heap from disk.
*
* Return: Success: Ptr to heap memory data structure.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 17 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static H5H_t *
H5H_load (H5F_t *f, const haddr_t *addr, const void *udata1, void *udata2)
{
uint8 hdr[20];
const uint8 *p=NULL;
H5H_t *heap=NULL;
H5H_free_t *fl=NULL, *tail=NULL;
size_t free_block=H5H_FREE_NULL;
H5H_t *ret_value=NULL;
FUNC_ENTER (H5H_load, NULL);
/* check arguments */
assert (f);
assert (addr && H5F_addr_defined (addr));
assert (H5H_SIZEOF_HDR(f) <= sizeof hdr);
assert (!udata1);
assert (!udata2);
if (H5F_block_read (f, addr, H5H_SIZEOF_HDR(f), hdr)<0) {
HRETURN_ERROR (H5E_HEAP, H5E_READERROR, NULL,
"unable to read heap header");
}
p = hdr;
heap = H5MM_xcalloc (1, sizeof(H5H_t));
/* magic number */
if (HDmemcmp (hdr, H5H_MAGIC, H5H_SIZEOF_MAGIC)) {
HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"bad heap signature");
}
p += H5H_SIZEOF_MAGIC;
/* heap data size */
H5F_decode_length (f, p, heap->disk_alloc);
heap->mem_alloc = heap->disk_alloc;
/* free list head */
H5F_decode_length (f, p, free_block);
if (free_block!=H5H_FREE_NULL && free_block>=heap->disk_alloc) {
HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"bad heap free list");
}
/* data */
H5F_addr_decode (f, &p, &(heap->addr));
heap->chunk = H5MM_xcalloc (1, H5H_SIZEOF_HDR(f) + heap->mem_alloc);
if (heap->disk_alloc &&
H5F_block_read (f, &(heap->addr), heap->disk_alloc,
heap->chunk + H5H_SIZEOF_HDR(f))<0) {
HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"unable to read heap data");
}
/* free list */
while (H5H_FREE_NULL!=free_block) {
if (free_block>=heap->disk_alloc) {
HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"bad heap free list");
}
fl = H5MM_xmalloc (sizeof (H5H_free_t));
fl->offset = free_block;
fl->prev = tail;
fl->next = NULL;
if (tail) tail->next = fl;
tail = fl;
if (!heap->freelist) heap->freelist = fl;
p = heap->chunk + H5H_SIZEOF_HDR(f) + free_block;
H5F_decode_length (f, p, free_block);
H5F_decode_length (f, p, fl->size);
if (fl->offset + fl->size > heap->disk_alloc) {
HGOTO_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"bad heap free list");
}
}
ret_value = heap;
done:
if (!ret_value && heap) {
heap->chunk = H5MM_xfree (heap->chunk);
H5MM_xfree (heap);
for (fl=heap->freelist; fl; fl=tail) {
tail = fl->next;
H5MM_xfree (fl);
}
}
FUNC_LEAVE (ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5H_flush
*
* Purpose: Flushes a heap from memory to disk if it's dirty. Optionally
* deletes the heap from memory.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 17 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5H_flush (H5F_t *f, hbool_t destroy, const haddr_t *addr, H5H_t *heap)
{
uint8 *p = heap->chunk;
H5H_free_t *fl = heap->freelist;
haddr_t hdr_end_addr;
FUNC_ENTER (H5H_flush, FAIL);
/* check arguments */
assert (f);
assert (addr && H5F_addr_defined (addr));
assert (heap);
if (heap->dirty) {
/*
* If the heap grew larger than disk storage then move the
* data segment of the heap to a larger contiguous block of
* disk storage.
*/
if (heap->mem_alloc > heap->disk_alloc) {
haddr_t old_addr = heap->addr, new_addr;
if (H5MF_alloc (f, H5MF_META, heap->mem_alloc, &new_addr/*out*/)<0) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL,
"unable to allocate file space for heap");
}
heap->addr = new_addr;
H5MF_free (f, &old_addr, heap->disk_alloc);
H5ECLEAR;/*don't really care if the free failed*/
heap->disk_alloc = heap->mem_alloc;
}
/*
* Write the header.
*/
HDmemcpy (p, H5H_MAGIC, H5H_SIZEOF_MAGIC); p += H5H_SIZEOF_MAGIC;
H5F_encode_length (f, p, heap->mem_alloc);
H5F_encode_length (f, p, fl?fl->offset:H5H_FREE_NULL);
H5F_addr_encode (f, &p, &(heap->addr));
/*
* Write the free list.
*/
while (fl) {
p = heap->chunk + H5H_SIZEOF_HDR(f) + fl->offset;
if (fl->next) {
H5F_encode_length (f, p, fl->next->offset);
} else {
H5F_encode_length (f, p, H5H_FREE_NULL);
}
H5F_encode_length (f, p, fl->size);
fl = fl->next;
}
/*
* Copy buffer to disk.
*/
hdr_end_addr = *addr;
H5F_addr_inc (&hdr_end_addr, H5H_SIZEOF_HDR (f));
if (H5F_addr_eq (&(heap->addr), &hdr_end_addr)) {
/* The header and data are contiguous */
if (H5F_block_write (f, addr, H5H_SIZEOF_HDR(f)+heap->disk_alloc,
heap->chunk)<0) {
HRETURN_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL,
"unable to write heap header and data to disk");
}
} else {
if (H5F_block_write (f, addr, H5H_SIZEOF_HDR(f), heap->chunk)<0) {
HRETURN_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL,
"unable to write heap header to disk");
}
if (H5F_block_write (f, &(heap->addr), heap->disk_alloc,
heap->chunk + H5H_SIZEOF_HDR(f))<0) {
HRETURN_ERROR (H5E_HEAP, H5E_WRITEERROR, FAIL,
"unable to write heap data to disk");
}
}
heap->dirty = 0;
}
/*
* Should we destroy the memory version?
*/
if (destroy) {
heap->chunk = H5MM_xfree (heap->chunk);
while (heap->freelist) {
fl = heap->freelist;
heap->freelist = fl->next;
H5MM_xfree (fl);
}
H5MM_xfree (heap);
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5H_read
*
* Purpose: Reads some object (or part of an object) from the heap
* whose address is ADDR in file F. OFFSET is the byte offset
* from the beginning of the heap at which to begin reading
* and SIZE is the number of bytes to read.
*
* If BUF is the null pointer then a buffer is allocated by
* this function.
*
* Attempting to read past the end of an object may cause this
* function to fail.
*
* If the heap address ADDR is the the null pointer then the
* address comes from the H5F_t global heap field.
*
* Return: Success: BUF (or the allocated buffer)
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 16 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void *
H5H_read (H5F_t *f, const haddr_t *addr, size_t offset, size_t size, void *buf)
{
H5H_t *heap = NULL;
FUNC_ENTER (H5H_read, NULL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (offset>=0);
if (NULL==(heap=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"unable to load heap");
}
assert (offset<heap->mem_alloc);
assert (offset+size<=heap->mem_alloc);
if (!buf) buf = H5MM_xmalloc (size);
HDmemcpy (buf, heap->chunk+H5H_SIZEOF_HDR(f)+offset, size);
FUNC_LEAVE (buf);
}
/*-------------------------------------------------------------------------
* Function: H5H_peek
*
* Purpose: This function is a more efficient version of H5H_read.
* Instead of copying a heap object into a caller-supplied
* buffer, this function returns a pointer directly into the
* cache where the heap is being held. Thus, the return pointer
* is valid only until the next call to the cache.
*
* The address of the heap is ADDR in file F. OFFSET is the
* byte offset of the object from the beginning of the heap and
* may include an offset into the interior of the object.
*
* If the heap address ADDR is the null pointer then
* the address comes from the H5F_t global heap field.
*
* Return: Success: Ptr to the object. The pointer points to
* a chunk of memory large enough to hold the
* object from the specified offset (usually
* the beginning of the object) to the end
* of the object. Do not attempt to read past
* the end of the object.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 16 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
const void *
H5H_peek (H5F_t *f, const haddr_t *addr, size_t offset)
{
H5H_t *heap = NULL;
const void *retval = NULL;
FUNC_ENTER (H5H_peek, NULL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (offset>=0);
if (NULL==(heap=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, NULL,
"unable to load heap");
}
assert (offset<heap->mem_alloc);
retval = heap->chunk+H5H_SIZEOF_HDR(f)+offset;
FUNC_LEAVE (retval);
}
/*-------------------------------------------------------------------------
* Function: H5H_remove_free
*
* Purpose: Removes free list element FL from the specified heap and
* frees it.
*
* Return: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 17 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static H5H_free_t *
H5H_remove_free (H5H_t *heap, H5H_free_t *fl)
{
if (fl->prev) fl->prev->next = fl->next;
if (fl->next) fl->next->prev = fl->prev;
if (!fl->prev) heap->freelist = fl->next;
return H5MM_xfree (fl);
}
/*-------------------------------------------------------------------------
* Function: H5H_insert
*
* Purpose: Inserts a new item into the heap.
*
* If the heap address ADDR is the null pointer then
* the address comes from the H5F_t global heap field.
*
* Return: Success: Offset of new item within heap.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 17 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
size_t
H5H_insert (H5F_t *f, const haddr_t *addr, size_t buf_size, const void *buf)
{
H5H_t *heap=NULL;
H5H_free_t *fl=NULL, *max_fl=NULL;
size_t offset = 0;
size_t old_size, need_more;
hbool_t found;
#ifndef NDEBUG
static nmessages = 0;
#endif
FUNC_ENTER (H5H_insert, FAIL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (buf_size>0);
assert (buf);
if (NULL==(heap=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, FAIL,
"unable to load heap");
}
heap->dirty += 1;
/*
* Look for a free slot large enough for this object and which would
* leave zero or at least H5G_SIZEOF_FREE bytes left over.
*/
for (fl=heap->freelist,found=FALSE; fl; fl=fl->next) {
if (fl->size>buf_size && fl->size-buf_size>=H5H_SIZEOF_FREE(f)) {
/* a bigger free block was found */
offset = fl->offset;
fl->offset += buf_size;
fl->size -= buf_size;
found = TRUE;
break;
} else if (fl->size==buf_size) {
/* free block of exact size found */
offset = fl->offset;
fl = H5H_remove_free (heap, fl);
found = TRUE;
break;
} else if (!max_fl || max_fl->offset < fl->offset) {
/* use worst fit */
max_fl = fl;
}
}
/*
* If no free chunk was large enough, then allocate more space and
* add it to the free list. If the heap ends with a free chunk, we
* can extend that free chunk. Otherwise we'll have to make another
* free chunk. If the heap must expand, we double its size.
*/
if (!found) {
need_more = MAX3 (buf_size, heap->mem_alloc, H5H_SIZEOF_FREE(f));
if (max_fl && max_fl->offset+max_fl->size==heap->mem_alloc) {
/*
* Increase the size of the maximum free block.
*/
offset = max_fl->offset;
max_fl->offset += buf_size;
max_fl->size += need_more - buf_size;
if (max_fl->size < H5H_SIZEOF_FREE(f)) {
#ifndef NDEBUG
if (max_fl->size) {
fprintf (stderr, "H5H_insert: lost %lu bytes at line %d\n",
(unsigned long)(max_fl->size), __LINE__);
if (0==nmessages++) {
fprintf (stderr, "Messages from H5H_insert() will go away "
"when assertions are turned off.\n");
}
}
#endif
max_fl = H5H_remove_free (heap, max_fl);
}
} else {
/*
* Create a new free list element large enough that we can
* take some space out of it right away.
*/
offset = heap->mem_alloc;
if (need_more-buf_size >= H5H_SIZEOF_FREE(f)) {
fl = H5MM_xmalloc (sizeof(H5H_free_t));
fl->offset = heap->mem_alloc + buf_size;
fl->size = need_more - buf_size;
fl->prev = NULL;
fl->next = heap->freelist;
if (heap->freelist) heap->freelist->prev = fl;
heap->freelist = fl;
#ifndef NDEBUG
} else if (need_more>buf_size) {
fprintf (stderr, "H5H_insert: lost %lu bytes at line %d\n",
(unsigned long)(need_more-buf_size), __LINE__);
if (0==nmessages++) {
fprintf (stderr, "Messages from H5H_insert() will go away "
"when assertions are turned off.\n");
}
#endif
}
}
#ifndef NDEBUG
fprintf (stderr, "H5H_insert: resize mem buf from %lu to %lu bytes\n",
(unsigned long)(heap->mem_alloc),
(unsigned long)(heap->mem_alloc + need_more));
if (0==nmessages++) {
fprintf (stderr, "Messages from H5H_insert() will go away "
"when assertions are turned off.\n");
}
#endif
old_size = heap->mem_alloc;
heap->mem_alloc += need_more;
heap->chunk = H5MM_xrealloc (heap->chunk,
H5H_SIZEOF_HDR(f)+heap->mem_alloc);
/* clear new section so junk doesn't appear in the file */
HDmemset (heap->chunk+H5H_SIZEOF_HDR(f)+old_size, 0, need_more);
}
/*
* Copy the data into the heap
*/
HDmemcpy (heap->chunk + H5H_SIZEOF_HDR(f) + offset, buf, buf_size);
FUNC_LEAVE (offset);
}
/*-------------------------------------------------------------------------
* Function: H5H_write
*
* Purpose: Writes (overwrites) the object (or part of object) stored
* in BUF to the heap at file address ADDR in file F. The
* writing begins at byte offset OFFSET from the beginning of
* the heap and continues for SIZE bytes.
*
* Do not partially write an object to create it; the first
* write for an object must be for the entire object.
*
* If the heap address ADDR is the null pointer then
* the address comes from the H5F_t global heap field.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 16 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5H_write (H5F_t *f, const haddr_t *addr, size_t offset, size_t size,
const void *buf)
{
H5H_t *heap = NULL;
FUNC_ENTER (H5H_write, FAIL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (offset>=0);
assert (buf);
if (NULL==(heap=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, FAIL,
"unable to load heap");
}
assert (offset<heap->mem_alloc);
assert (offset+size<=heap->mem_alloc);
heap->dirty += 1;
HDmemcpy (heap->chunk+H5H_SIZEOF_HDR(f)+offset, buf, size);
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5H_remove
*
* Purpose: Removes an object or part of an object from the heap at
* address ADDR of file F. The object (or part) to remove
* begins at byte OFFSET from the beginning of the heap and
* continues for SIZE bytes.
*
* Once part of an object is removed, one must not attempt
* to access that part. Removing the beginning of an object
* results in the object OFFSET increasing by the amount
* truncated. Removing the end of an object results in
* object truncation. Removing the middle of an object results
* in two separate objects, one at the original offset and
* one at the first offset past the removed portion.
*
* If the heap address ADDR is the null pointer then
* the address comes from the H5F_t global heap field.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Jul 16 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5H_remove (H5F_t *f, const haddr_t *addr, size_t offset, size_t size)
{
H5H_t *heap = NULL;
H5H_free_t *fl = heap->freelist, *fl2 = NULL;
#ifndef NDEBUG
static int nmessages = 0;
#endif
FUNC_ENTER (H5H_remove, FAIL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (offset>=0);
assert (size>0);
if (NULL==(heap=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, FAIL,
"unable to load heap");
}
assert (offset<heap->mem_alloc);
assert (offset+size<=heap->mem_alloc);
heap->dirty += 1;
/*
* Check if this chunk can be prepended or appended to an already
* free chunk. It might also fall between two chunks in such a way
* that all three chunks can be combined into one.
*/
while (fl) {
if (offset + size == fl->offset) {
fl->offset = offset;
fl->size += size;
fl2 = fl->next;
while (fl2) {
if (fl2->offset + fl2->size == fl->offset) {
fl->offset = fl2->offset;
fl->size += fl2->size;
fl2 = H5H_remove_free (heap, fl2);
HRETURN (SUCCEED);
}
}
HRETURN (SUCCEED);
} else if (fl->offset + fl->size == offset) {
fl->size += size;
fl2 = fl->next;
while (fl2) {
if (fl->offset + fl->size == fl2->offset) {
fl->size += fl2->size;
fl2 = H5H_remove_free (heap, fl2);
HRETURN (SUCCEED);
}
}
HRETURN (SUCCEED);
}
fl = fl->next;
}
/*
* The amount which is being removed must be large enough to
* hold the free list data. If not, the freed chunk is forever
* lost.
*/
if (size < H5H_SIZEOF_FREE(f)) {
#ifndef NDEBUG
fprintf (stderr, "H5H_remove: lost %lu bytes\n", (unsigned long)size);
if (0==nmessages++) {
fprintf (stderr, "Messages from H5H_remove() will go away "
"when assertions are turned off.\n");
}
#endif
HRETURN (SUCCEED);
}
/*
* Add an entry to the free list.
*/
fl = H5MM_xmalloc (sizeof(H5H_free_t));
fl->offset = offset;
fl->size = size;
fl->prev = NULL;
fl->next = heap->freelist;
if (heap->freelist) heap->freelist->prev = fl;
heap->freelist = fl;
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5H_debug
*
* Purpose: Prints debugging information about a heap.
*
* If the heap address ADDR is the null pointer then
* the address comes from the H5F_t global heap field.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 1 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5H_debug (H5F_t *f, const haddr_t *addr, FILE *stream, intn indent, intn fwidth)
{
H5H_t *h = NULL;
int i, j, overlap;
uint8 c;
H5H_free_t *freelist=NULL;
uint8 *marker = NULL;
size_t amount_free = 0;
FUNC_ENTER (H5H_debug, FAIL);
/* check arguments */
assert (f);
if (!addr) addr = &(f->shared->smallobj_addr);
assert (H5F_addr_defined (addr));
assert (stream);
assert (indent>=0);
assert (fwidth>=0);
if (NULL==(h=H5AC_find (f, H5AC_HEAP, addr, NULL, NULL))) {
HRETURN_ERROR (H5E_HEAP, H5E_CANTLOAD, FAIL,
"unable to load heap");
}
fprintf (stream, "%*sHeap...\n", indent, "");
fprintf (stream, "%*s%-*s %d\n", indent, "", fwidth,
"Dirty:",
(int)(h->dirty));
fprintf (stream, "%*s%-*s %lu\n", indent, "", fwidth,
"Data bytes allocated on disk:",
(unsigned long)(h->disk_alloc));
fprintf (stream, "%*s%-*s %lu\n", indent, "", fwidth,
"Data bytes allocated in core:",
(unsigned long)(h->mem_alloc));
/*
* Traverse the free list and check that all free blocks fall within
* the heap and that no two free blocks point to the same region of
* the heap.
*/
marker = H5MM_xcalloc (h->mem_alloc, 1);
for (freelist=h->freelist; freelist; freelist=freelist->next) {
fprintf (stream, "%*s%-*s %8lu, %8lu\n", indent, "", fwidth,
"Free Block (offset,size):",
(unsigned long)(freelist->offset),
(unsigned long)(freelist->size));
if (freelist->offset + freelist->size > h->mem_alloc) {
fprintf (stream, "***THAT FREE BLOCK IS OUT OF BOUNDS!\n");
} else {
for (i=overlap=0; i<freelist->size; i++) {
if (marker[freelist->offset+i]) overlap++;
marker[freelist->offset+i] = 1;
}
if (overlap) {
fprintf (stream,"***THAT FREE BLOCK OVERLAPPED A PREVIOUS ONE!\n");
} else {
amount_free += freelist->size;
}
}
}
if (h->mem_alloc) {
fprintf (stream, "%*s%-*s %lu\n", indent, "", fwidth,
"Percent of heap used:",
(unsigned long)(100 * (h->mem_alloc - amount_free) /
h->mem_alloc));
}
/*
* Print the data in a VMS-style octal dump.
*/
fprintf (stream, "%*sData follows (`__' indicates free region)...\n",
indent, "");
for (i=0; i<h->disk_alloc; i+=16) {
fprintf (stream, "%*s %8d: ", indent, "", i);
for (j=0; j<16; j++) {
if (i+j<h->disk_alloc) {
if (marker[i+j]) {
fprintf (stream, "__ ");
} else {
c = h->chunk[H5H_SIZEOF_HDR(f)+i+j];
fprintf (stream, "%02x ", c);
}
} else {
fprintf (stream, " ");
}
if (7==j) HDfputc (' ', stream);
}
for (j=0; j<16; j++) {
if (i+j<h->disk_alloc) {
if (marker[i+j]) {
HDfputc (' ', stream);
} else {
c = h->chunk[H5H_SIZEOF_HDR(f)+i+j];
if (c>' ' && c<'~') HDfputc (c, stream);
else HDfputc ('.', stream);
}
}
}
HDfputc ('\n', stream);
}
H5MM_xfree (marker);
FUNC_LEAVE (SUCCEED);
}
|