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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5HFdblock.c
* Apr 10 2006
* Quincey Koziol <koziol@ncsa.uiuc.edu>
*
* Purpose: Direct block routines for fractal heaps.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5HF_PACKAGE /*suppress error about including H5HFpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5HFpkg.h" /* Fractal heaps */
#include "H5MFprivate.h" /* File memory management */
#include "H5Vprivate.h" /* Vectors and arrays */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/* Declare a free list to manage the H5HF_direct_t struct */
H5FL_DEFINE(H5HF_direct_t);
/* Declare a free list to manage the H5HF_direct_free_head_t struct */
H5FL_DEFINE(H5HF_direct_free_head_t);
/* Declare a free list to manage the H5HF_direct_free_node_t struct */
H5FL_DEFINE(H5HF_direct_free_node_t);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5HF_man_dblock_create
*
* Purpose: Allocate & initialize a managed direct block
*
* Return: Pointer to new direct block on success, NULL on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Feb 27 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_dblock_create(hid_t dxpl_id, H5HF_t *hdr, H5HF_indirect_t *par_iblock,
unsigned par_entry, size_t block_size, hsize_t block_off, haddr_t *addr_p,
H5HF_free_section_t **ret_sec_node)
{
H5HF_direct_free_node_t *node; /* Pointer to free list node for block */
H5HF_free_section_t *sec_node; /* Pointer to free list section for block */
H5HF_direct_t *dblock = NULL; /* Pointer to direct block */
size_t free_space; /* Free space in new block */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_dblock_create)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(block_size > 0);
HDassert(addr_p);
/*
* Allocate file and memory data structures.
*/
if(NULL == (dblock = H5FL_MALLOC(H5HF_direct_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for fractal heap direct block")
/* Reset the metadata cache info for the heap header */
HDmemset(&dblock->cache_info, 0, sizeof(H5AC_info_t));
/* Share common heap information */
dblock->shared = hdr;
if(H5HF_hdr_incr(hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINC, FAIL, "can't increment reference count on shared heap header")
/* Set info for direct block */
#ifdef QAK
HDfprintf(stderr, "%s: size = %Zu, block_off = %Hu\n", FUNC, block_size, block_off);
#endif /* QAK */
dblock->parent = par_iblock;
if(dblock->parent) {
if(H5HF_iblock_incr(par_iblock) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINC, FAIL, "can't increment reference count on shared indirect block")
dblock->par_addr = par_iblock->addr;
dblock->par_nrows = par_iblock->nrows;
} /* end if */
else {
dblock->par_addr = HADDR_UNDEF;
dblock->par_nrows = 0;
} /* end else */
dblock->par_entry = par_entry;
dblock->size = block_size;
dblock->block_off = block_off;
dblock->blk_off_size = H5HF_SIZEOF_OFFSET_LEN(block_size);
dblock->free_list_head = H5HF_MAN_ABS_DIRECT_OVERHEAD_DBLOCK(hdr, dblock);
dblock->blk_free_space = block_size -
(H5HF_MAN_ABS_DIRECT_OVERHEAD_SIZE(hdr, block_size) + H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr));
free_space = block_size - dblock->free_list_head;
/* Allocate buffer for block */
/* XXX: Change to using free-list factories */
if((dblock->blk = H5FL_BLK_MALLOC(direct_block, block_size)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
#ifdef H5_USING_PURIFY
HDmemset(dblock->blk, 0, dblock->size);
#endif /* H5_USING_PURIFY */
/* Set up free list head */
if(NULL == (dblock->free_list = H5FL_MALLOC(H5HF_direct_free_head_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list head")
dblock->free_list->dirty = TRUE;
/* Set up free list node for all unused space in block */
if(NULL == (node = H5FL_MALLOC(H5HF_direct_free_node_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list node")
/* Set node's information */
node->size = free_space;
node->my_offset = dblock->free_list_head;
node->next_offset = 0;
node->prev = node->next = NULL;
/* Attach to free list head */
/* XXX: Convert this list to a skip list? */
dblock->free_list->first = node;
/* Allocate space for the header on disk */
if(HADDR_UNDEF == (*addr_p = H5MF_alloc(hdr->f, H5FD_MEM_FHEAP_DBLOCK, dxpl_id, (hsize_t)block_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for fractal heap direct block")
/* Create free list section node */
if(NULL == (sec_node = H5FL_MALLOC(H5HF_free_section_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list section")
/* Set section's information */
sec_node->sect_addr = block_off + node->my_offset;
/* (section size is "object size", without the metadata overhead) */
sec_node->sect_size = node->size - H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr);
sec_node->type = H5HF_SECT_SINGLE;
sec_node->u.single.dblock_addr = *addr_p;
sec_node->u.single.dblock_size = block_size;
/* Check what to do with section node */
if(ret_sec_node)
/* Pass back the pointer to the section instead of adding it to the free list */
*ret_sec_node = sec_node;
else {
/* Add new free space to the global list of space */
if(H5HF_flist_add(hdr->flist, sec_node, &sec_node->sect_size, &sec_node->sect_addr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't add direct block free space to global list")
} /* end else */
/* Cache the new fractal heap direct block */
if(H5AC_set(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, *addr_p, dblock, H5AC__NO_FLAGS_SET) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't add fractal heap direct block to cache")
done:
if(ret_value < 0)
if(dblock)
(void)H5HF_cache_dblock_dest(hdr->f, dblock);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_dblock_create() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_dblock_build_freelist
*
* Purpose: Parse the free list information for a direct block and build
* block's free list
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Feb 28 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_dblock_build_freelist(H5HF_direct_t *dblock, haddr_t dblock_addr)
{
H5HF_direct_free_head_t *head = NULL; /* Pointer to free list head for block */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_dblock_build_freelist)
/*
* Check arguments.
*/
HDassert(dblock);
/* Allocate head of list */
if(NULL == (head = H5FL_MALLOC(H5HF_direct_free_head_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list head")
head->dirty = FALSE;
/* Check for any nodes on free list */
if(dblock->free_list_head == 0)
head->first = NULL;
else {
H5HF_t *hdr; /* Pointer to shared heap header */
H5HF_free_section_t *sec_node; /* Pointer to free list section for block */
H5HF_direct_free_node_t *node = NULL; /* Pointer to free list node for block */
H5HF_direct_free_node_t *prev_node; /* Pointer to previous free list node for block */
hsize_t free_len; /* Length of free list info */
hsize_t next_off; /* Next node offset in block */
hsize_t prev_off; /* Prev node offset in block */
uint8_t *p; /* Temporary pointer to free node info */
/* Get the pointer to the shared heap info */
hdr = dblock->shared;
/* Point to first node in free list */
p = dblock->blk + dblock->free_list_head;
/* Decode information for first node on free list */
UINT64DECODE_VAR(p, free_len, dblock->blk_off_size);
UINT64DECODE_VAR(p, next_off, dblock->blk_off_size);
/* Allocate node on list */
if(NULL == (node = H5FL_MALLOC(H5HF_direct_free_node_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list node")
/* Set node's information */
node->size = free_len;
node->my_offset = dblock->free_list_head;
node->next_offset = next_off;
node->prev = node->next = NULL;
/* Attach to free list head */
head->first = node;
/* Set block's free space */
dblock->blk_free_space = free_len;
/* Create free list section node */
if(NULL == (sec_node = H5FL_MALLOC(H5HF_free_section_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list section")
/* Set section's information */
sec_node->sect_addr = dblock->block_off + node->my_offset;
/* (section size is "object size", without the metadata overhead) */
sec_node->sect_size = node->size - H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr);
sec_node->type = H5HF_SECT_SINGLE;
sec_node->u.single.dblock_addr = dblock_addr;
sec_node->u.single.dblock_size = dblock->size;
/* Add new free space to the global list of space */
if(H5HF_flist_add(hdr->flist, sec_node, &sec_node->sect_size, &sec_node->sect_addr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't add direct block free space to global list")
/* Set up trailing node pointer */
prev_node = node;
prev_off = next_off;
/* Bring in rest of node on free list */
while(next_off != 0) {
/* Point to first node in free list */
p = dblock->blk + next_off;
/* Decode information for first node on free list */
UINT64DECODE_VAR(p, free_len, dblock->blk_off_size);
UINT64DECODE_VAR(p, next_off, dblock->blk_off_size);
/* Allocate node on list */
if(NULL == (node = H5FL_MALLOC(H5HF_direct_free_node_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list node")
/* Set node's information */
node->size = free_len;
node->my_offset = prev_off;
node->next_offset = next_off;
node->prev = prev_node;
node->next = NULL;
/* Adjust block's free space */
dblock->blk_free_space += free_len;
/* Create free list section node */
if(NULL == (sec_node = H5FL_MALLOC(H5HF_free_section_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for direct block free list section")
/* Set section's information */
sec_node->sect_addr = dblock->block_off + node->my_offset;
/* (section size is "object size", without the metadata overhead) */
sec_node->sect_size = node->size - H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr);
sec_node->type = H5HF_SECT_SINGLE;
sec_node->u.single.dblock_addr = dblock_addr;
sec_node->u.single.dblock_size = dblock->size;
/* Add new free space to the global list of space */
if(H5HF_flist_add(hdr->flist, sec_node, &sec_node->sect_size, &sec_node->sect_addr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't add direct block free space to global list")
/* Update trailing info */
prev_node->next = node;
prev_off = next_off;
/* Advance to next node */
prev_node = node;
} /* end while */
} /* end else */
/* Assign free list head to block */
dblock->free_list = head;
done:
/* XXX: cleanup on failure? */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_dblock_build_freelist() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_dblock_adj_free
*
* Purpose: Adjust the free space for a direct block, and it's parents
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_dblock_adj_free(hid_t dxpl_id, H5HF_direct_t *dblock, ssize_t amt)
{
H5HF_t *hdr; /* Shared heap information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_dblock_adj_free)
#ifdef QAK
HDfprintf(stderr, "%s: amt = %Zd\n", FUNC, amt);
#endif /* QAK */
/*
* Check arguments.
*/
HDassert(dblock);
/* Get the pointer to the shared heap header */
hdr = dblock->shared;
/* Adjust space available in block */
HDassert(amt > 0 || dblock->blk_free_space >= (size_t)-amt);
dblock->blk_free_space += amt;
/* Check if the parent info is set */
if(dblock->parent) {
H5HF_indirect_t *iblock; /* Block's parent */
/* Get the pointer to the shared parent indirect block */
iblock = dblock->parent;
/* Adjust this indirect block's child free space */
#ifdef QAK
HDfprintf(stderr, "%s: dblock->par_entry = %u\n", FUNC, dblock->par_entry);
HDfprintf(stderr, "%s: iblock->block_off = %a\n", FUNC, iblock->block_off);
HDfprintf(stderr, "%s: iblock->child_free_space = %Hu\n", FUNC, iblock->child_free_space);
HDfprintf(stderr, "%s: iblock->ents[dblock->par_entry].free_space = %Hu\n", FUNC, iblock->ents[dblock->par_entry].free_space);
#endif /* QAK */
HDassert(amt > 0 || iblock->ents[dblock->par_entry].free_space >= (hsize_t)-amt);
iblock->ents[dblock->par_entry].free_space += amt;
HDassert(amt > 0 || iblock->child_free_space >= (hsize_t)-amt);
iblock->child_free_space += amt;
/* Mark indirect block as dirty */
if(H5HF_iblock_dirty(dxpl_id, iblock) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark indirect block as dirty")
/* Modify the free space in parent block(s) */
while(iblock->parent) {
size_t par_entry; /* Entry in parent */
/* Get the pointer to the shared parent indirect block */
par_entry = iblock->par_entry;
iblock = iblock->parent;
HDassert(iblock);
/* Adjust this indirect block's child free space */
HDassert(amt > 0 || iblock->ents[par_entry].free_space >= (hsize_t)-amt);
iblock->ents[par_entry].free_space += amt;
HDassert(amt > 0 || iblock->child_free_space >= (hsize_t)-amt);
iblock->child_free_space += amt;
/* Mark indirect block as dirty */
if(H5HF_iblock_dirty(dxpl_id, iblock) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark indirect block as dirty")
} /* end while */
} /* end if */
/* Update shared heap free space header */
HDassert(amt > 0 || hdr->total_man_free >= (hsize_t)-amt);
hdr->total_man_free += amt;
#ifdef QAK
HDfprintf(stderr, "%s: hdr->total_man_free = %Hu\n", FUNC, hdr->total_man_free);
#endif /* QAK */
/* Mark heap header as modified */
if(H5HF_hdr_dirty(dxpl_id, hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark heap header as dirty")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_dblock_adj_free() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_dblock_new
*
* Purpose: Create a direct block large enough to hold an object of
* the requested size
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 13 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_dblock_new(H5HF_t *hdr, hid_t dxpl_id, size_t request)
{
haddr_t dblock_addr; /* Address of new direct block */
size_t dblock_size; /* Size of new direct block */
size_t min_dblock_size; /* Min. size of direct block to allocate */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_dblock_new)
#ifdef QAK
HDfprintf(stderr, "%s: request = %Zu\n", FUNC, request);
#endif /* QAK */
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(request > 0);
/* Compute the min. size of the direct block needed to fulfill the request */
if(request < hdr->man_dtable.cparam.start_block_size)
min_dblock_size = hdr->man_dtable.cparam.start_block_size;
else {
min_dblock_size = 1 << (1 + H5V_log2_gen((hsize_t)request));
HDassert(min_dblock_size <= hdr->man_dtable.cparam.max_direct_size);
} /* end else */
/* Adjust the size of block needed to fulfill request, with overhead */
#ifdef QAK
HDfprintf(stderr, "%s: Check 1 - min_dblock_size = %Zu\n", FUNC, min_dblock_size);
HDfprintf(stderr, "%s: H5HF_MAN_ABS_DIRECT_OVERHEAD_SIZE = %u\n", FUNC, H5HF_MAN_ABS_DIRECT_OVERHEAD_SIZE(hdr, hdr->man_dtable.cparam.start_block_size));
HDfprintf(stderr, "%s: H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN = %u\n", FUNC, H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr));
#endif /* QAK */
if((min_dblock_size - request) < (H5HF_MAN_ABS_DIRECT_OVERHEAD_SIZE(hdr, min_dblock_size)
+ H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr)))
min_dblock_size *= 2;
#ifdef QAK
HDfprintf(stderr, "%s: Check 2 - min_dblock_size = %Zu\n", FUNC, min_dblock_size);
#endif /* QAK */
/* Check if this is the first block in the heap */
if(!H5F_addr_defined(hdr->man_dtable.table_addr) &&
min_dblock_size == hdr->man_dtable.cparam.start_block_size) {
/* Create new direct block at starting offset */
dblock_size = hdr->man_dtable.cparam.start_block_size;
if(H5HF_man_dblock_create(dxpl_id, hdr, NULL, 0, dblock_size, (hsize_t)0, &dblock_addr, NULL) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't allocate fractal heap direct block")
#ifdef QAK
HDfprintf(stderr, "%s: dblock_addr = %a\n", FUNC, dblock_addr);
#endif /* QAK */
/* Point root at new direct block */
hdr->man_dtable.curr_root_rows = 0;
hdr->man_dtable.table_addr = dblock_addr;
/* Extend heap to cover new direct block */
if(H5HF_hdr_extend_heap(hdr, (hsize_t)dblock_size, hdr->man_dtable.row_dblock_free[0]) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTEXTEND, FAIL, "can't increase space to cover root direct block")
} /* end if */
/* Root entry already exists, go get indirect block for new direct block */
else {
H5HF_indirect_t *iblock; /* Pointer to indirect block to create */
haddr_t iblock_addr; /* Indirect block's address */
size_t dblock_entry; /* Direct entry for new direct block */
hsize_t dblock_off; /* Direct block offset in heap address space */
/* Find indirect block with room for block of correct size */
if(NULL == (iblock = H5HF_man_iblock_place_dblock(hdr, dxpl_id, min_dblock_size, &iblock_addr, &dblock_entry, &dblock_size)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "unable to locate indirect block with space for direct block")
#ifdef QAK
HDfprintf(stderr, "%s: iblock_addr = %a\n", FUNC, iblock_addr);
HDfprintf(stderr, "%s: dblock_entry = %Zu\n", FUNC, dblock_entry);
HDfprintf(stderr, "%s: dblock_size = %Zu\n", FUNC, dblock_size);
#endif /* QAK */
/* Compute the direct block's offset in the heap's address space */
dblock_off = iblock->block_off;
dblock_off += hdr->man_dtable.row_block_off[dblock_entry / hdr->man_dtable.cparam.width];
dblock_off += hdr->man_dtable.row_block_size[dblock_entry / hdr->man_dtable.cparam.width] * (dblock_entry % hdr->man_dtable.cparam.width);
/* Create new direct block at current location*/
if(H5HF_man_dblock_create(dxpl_id, hdr, iblock, dblock_entry, dblock_size, dblock_off, &dblock_addr, NULL) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't allocate fractal heap direct block")
#ifdef QAK
HDfprintf(stderr, "%s: dblock_addr = %a\n", FUNC, dblock_addr);
#endif /* QAK */
/* Point indirect block at new direct block */
iblock->ents[dblock_entry].addr = dblock_addr;
/* Mark indirect block as modified */
if(H5HF_iblock_dirty(dxpl_id, iblock) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark indirect block as dirty")
/* Release the indirect block (marked as dirty) */
if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_FHEAP_IBLOCK, iblock_addr, iblock, H5AC__DIRTIED_FLAG) < 0)
HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block")
} /* end else */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_dblock_new() */
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