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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5HFint.c
* Feb 24 2006
* Quincey Koziol <koziol@ncsa.uiuc.edu>
*
* Purpose: "Internal" routines for fractal heaps.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5HF_PACKAGE /*suppress error about including H5HFpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5HFpkg.h" /* Fractal heaps */
#include "H5MFprivate.h" /* File memory management */
#include "H5MMprivate.h" /* Memory management */
#include "H5Vprivate.h" /* Vectors and arrays */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/*********************/
/* Package Variables */
/*********************/
/* Declare a free list to manage the H5HF_free_section_t struct */
H5FL_DEFINE(H5HF_free_section_t);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5HF_free_section_free_cb
*
* Purpose: Free a free section node
*
* Return: Success: non-negative
*
* Failure: negative
*
* Programmer: Quincey Koziol
* Monday, March 13, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_free_section_free_cb(void *item, void UNUSED *key, void UNUSED *op_data)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5HF_free_section_free_cb)
HDassert(item);
/* Release the sections */
H5FL_FREE(H5HF_free_section_t, item);
FUNC_LEAVE_NOAPI(0)
} /* H5HF_free_section_free_cb() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_find
*
* Purpose: Find space for an object in a managed obj. heap
*
* Return: Non-negative on success (with direct block info
* filled in), negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 13 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_find(H5HF_t *hdr, hid_t dxpl_id, size_t request,
H5HF_free_section_t **sec_node/*out*/)
{
htri_t node_found; /* Whether an existing free list node was found */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_find)
#ifdef QAK
HDfprintf(stderr, "%s: request = %Zu\n", FUNC, request);
#endif /* QAK */
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(request > 0);
HDassert(sec_node);
/* Look for free space in global free list */
if((node_found = H5HF_flist_find(hdr->flist, request, (void **)sec_node)) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't locate free space in fractal heap direct block")
/* XXX: Make certain we've loaded all the direct blocks in the heap */
/* If we didn't find a node, go make one big enough to hold the requested block */
if(!node_found) {
/* Allocate direct block big enough to hold requested size */
if(H5HF_man_dblock_new(hdr, dxpl_id, request) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTCREATE, FAIL, "can't create fractal heap direct block")
/* Request space from the free list */
/* (Ought to be able to be filled, now) */
if(H5HF_flist_find(hdr->flist, request, (void **)sec_node) <= 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't locate free space in fractal heap direct block")
} /* end if */
HDassert(*sec_node);
#ifdef QAK
HDfprintf(stderr, "%s: (*sec_node)->block_addr = %a\n", FUNC, (*sec_node)->block_addr);
HDfprintf(stderr, "%s: (*sec_node)->block_size = %Zu\n", FUNC, (*sec_node)->block_size);
HDfprintf(stderr, "%s: (*sec_node)->sect_addr = %a\n", FUNC, (*sec_node)->sect_addr);
HDfprintf(stderr, "%s: (*sec_node)->sect_size = %Zu\n", FUNC, (*sec_node)->sect_size);
#endif /* QAK */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_find() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_insert
*
* Purpose: Insert an object in a managed direct block
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 13 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_insert(H5HF_t *hdr, hid_t dxpl_id, H5HF_free_section_t *sec_node,
size_t obj_size, const void *obj, void *id)
{
H5HF_direct_t *dblock = NULL; /* Pointer to direct block to modify */
haddr_t dblock_addr; /* Direct block address */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_insert)
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(obj_size > 0);
HDassert(obj);
HDassert(id);
/* Check for indirect section */
if(sec_node->type == H5HF_SECT_INDIRECT) {
#ifdef QAK
HDfprintf(stderr, "%s: sec_node->sect_addr = %a\n", FUNC, sec_node->sect_addr);
HDfprintf(stderr, "%s: sec_node->sect_size = %Zu\n", FUNC, sec_node->sect_size);
HDfprintf(stderr, "%s: sec_node->u.indirect.iblock_addr = %a\n", FUNC, sec_node->u.indirect.iblock_addr);
HDfprintf(stderr, "%s: sec_node->u.indirect.iblock_nrows = %u\n", FUNC, sec_node->u.indirect.iblock_nrows);
HDfprintf(stderr, "%s: sec_node->u.indirect.row = %u\n", FUNC, sec_node->u.indirect.row);
HDfprintf(stderr, "%s: sec_node->u.indirect.col = %u\n", FUNC, sec_node->u.indirect.col);
HDfprintf(stderr, "%s: sec_node->u.indirect.num_entries = %u\n", FUNC, sec_node->u.indirect.num_entries);
HDfprintf(stderr, "%s: sec_node->u.indirect.indir_row = %u\n", FUNC, sec_node->u.indirect.indir_row);
HDfprintf(stderr, "%s: sec_node->u.indirect.indir_nrows = %u\n", FUNC, sec_node->u.indirect.indir_nrows);
#endif /* QAK */
/* Allocate 'single' selection out of 'indirect' selection */
if(H5HF_man_iblock_alloc_indirect(hdr, dxpl_id, &sec_node, obj_size) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't break up indirect free section")
} /* end if */
/* Check for range section */
else if(sec_node->type == H5HF_SECT_RANGE) {
#ifdef QAK
HDfprintf(stderr, "%s: sec_node->sect_addr = %a\n", FUNC, sec_node->sect_addr);
HDfprintf(stderr, "%s: sec_node->sect_size = %Zu\n", FUNC, sec_node->sect_size);
HDfprintf(stderr, "%s: sec_node->u.range.iblock_addr = %a\n", FUNC, sec_node->u.range.iblock_addr);
HDfprintf(stderr, "%s: sec_node->u.range.iblock_nrows = %u\n", FUNC, sec_node->u.range.iblock_nrows);
HDfprintf(stderr, "%s: sec_node->u.range.row = %u\n", FUNC, sec_node->u.range.row);
HDfprintf(stderr, "%s: sec_node->u.range.col = %u\n", FUNC, sec_node->u.range.col);
HDfprintf(stderr, "%s: sec_node->u.range.num_entries = %u\n", FUNC, sec_node->u.range.num_entries);
#endif /* QAK */
/* Allocate 'single' selection out of 'range' selection */
if(H5HF_man_iblock_alloc_range(hdr, dxpl_id, &sec_node, obj_size) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTALLOC, FAIL, "can't break up range free section")
} /* end if */
/* Lock direct block */
#ifdef QAK
HDfprintf(stderr, "%s: sec_node->sect_addr = %a\n", FUNC, sec_node->sect_addr);
HDfprintf(stderr, "%s: sec_node->sect_size = %Zu\n", FUNC, sec_node->sect_size);
HDfprintf(stderr, "%s: sec_node->u.single.dblock_addr = %a\n", FUNC, sec_node->u.single.dblock_addr);
HDfprintf(stderr, "%s: sec_node->u.single.dblock_size = %Zu\n", FUNC, sec_node->u.single.dblock_size);
#endif /* QAK */
dblock_addr = sec_node->u.single.dblock_addr;
if(NULL == (dblock = H5AC_protect(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, dblock_addr, &sec_node->u.single.dblock_size, hdr, H5AC_WRITE)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to load fractal heap direct block")
/* Insert object into block */
/* Check for address mapping type */
if(hdr->addrmap == H5HF_ABSOLUTE) {
H5HF_direct_free_node_t *node; /* Block's free list node */
uint8_t *p; /* Temporary pointer to obj info in block */
size_t obj_off; /* Offset of object within block */
size_t full_obj_size; /* Size of object including metadata */
size_t alloc_obj_size; /* Size of object including metadata & any free space fragment */
size_t free_obj_size; /* Size of space to free for object */
hbool_t whole_node = FALSE; /* Whether we've used the whole node or not */
unsigned char free_frag_size; /* Size of free space fragment */
/* Locate "local" free list node for section */
/* XXX: Change to using skip list? */
obj_off = sec_node->sect_addr - dblock->block_off;
node = dblock->free_list->first;
while(node->my_offset != obj_off)
node = node->next;
/* Compute full object size, with metadata for object */
full_obj_size = obj_size + H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr);
/* Sanity checks */
#ifdef QAK
HDfprintf(stderr, "%s: hdr->total_man_free = %Hu\n", FUNC, hdr->total_man_free);
HDfprintf(stderr, "%s: dblock->blk_free_space = %Zu\n", FUNC, dblock->blk_free_space);
HDfprintf(stderr, "%s: dblock->block_off = %Hu\n", FUNC, dblock->block_off);
#endif /* QAK */
HDassert(dblock->blk_free_space >= obj_size);
HDassert(dblock->free_list);
HDassert(node->size >= full_obj_size);
/* Check for using entire node */
free_frag_size = 0;
#ifdef QAK
HDfprintf(stderr, "%s: node->size = %Zu\n", FUNC, node->size);
#endif /* QAK */
if(node->size <= (full_obj_size + H5HF_MAN_ABS_DIRECT_FREE_NODE_SIZE(dblock))) {
/* Set the offset of the object within the block */
obj_off = node->my_offset;
/* Check for allocating from first node in list */
if(node->prev == NULL) {
/* Make the next node in the free list the list head */
dblock->free_list->first = node->next;
dblock->free_list_head = node->next_offset;
} /* end if */
else {
H5HF_direct_free_node_t *prev_node; /* Pointer to previous free list node for block */
/* Excise node from list */
prev_node = node->prev;
prev_node->next = node->next;
if(node->next) {
H5HF_direct_free_node_t *next_node; /* Pointer to next free list node for block */
next_node = node->next;
next_node->prev = prev_node;
prev_node->next_offset = next_node->my_offset;
} /* end if */
else
prev_node->next_offset = 0;
} /* end if */
/* Set the free fragment size */
free_frag_size = (unsigned char )(node->size - full_obj_size);
whole_node = TRUE;
/* Release the memory for the free list node & section */
H5FL_FREE(H5HF_direct_free_node_t, node);
H5FL_FREE(H5HF_free_section_t, sec_node);
} /* end if */
else {
/* Allocate object from end of free space node */
/* (so we don't have to adjust with any other node's info */
obj_off = (node->my_offset + node->size) - full_obj_size;
node->size -= full_obj_size;
/* Adjust information for section node */
sec_node->sect_size -= full_obj_size;
/* Re-insert section node onto global list */
if(H5HF_flist_add(hdr->flist, sec_node, &sec_node->sect_size, &sec_node->sect_addr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTINIT, FAIL, "can't add direct block free space to global list")
} /* end else */
/* Mark free list as dirty */
dblock->free_list->dirty = TRUE;
/* Compute the size of the space to actually allocate */
/* (includes the metadata for the object & the free space fragment) */
alloc_obj_size = full_obj_size + free_frag_size;
/* Compute the size of the free space to reduce */
/* (does not include the object prefix if this object uses a whole node) */
free_obj_size = obj_size + (whole_node ? free_frag_size : H5HF_MAN_ABS_DIRECT_OBJ_PREFIX_LEN(hdr));
#ifdef QAK
HDfprintf(stderr, "%s: obj_off = %Zu\n", FUNC, obj_off);
HDfprintf(stderr, "%s: free_frag_size = %Zu\n", FUNC, free_frag_size);
HDfprintf(stderr, "%s: full_obj_size = %Zu\n", FUNC, full_obj_size);
HDfprintf(stderr, "%s: alloc_obj_size = %Zu\n", FUNC, alloc_obj_size);
#endif /* QAK */
/* Reduce space available in parent block(s) */
if(H5HF_man_dblock_adj_free(dxpl_id, dblock, -(ssize_t)free_obj_size) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDEC, FAIL, "can't adjust free space for direct block & parents")
/* Encode the object in the block */
/* Point to location for object */
p = dblock->blk + obj_off;
/* Encode the free fragment size */
*p++ = free_frag_size;
/* Copy the object's data into the heap */
HDmemcpy(p, obj, obj_size);
p += obj_size;
#ifdef H5_USING_PURIFY
/* Zero out the free space fragment */
HDmemset(p, 0, free_frag_size);
#endif /* H5_USING_PURIFY */
#ifndef NDEBUG
p += free_frag_size;
#endif /* NDEBUG */
/* Sanity check */
HDassert((size_t)(p - (dblock->blk + obj_off)) == alloc_obj_size);
/* Set the heap ID for the new object (heap offset & obj length) */
#ifdef QAK
HDfprintf(stderr, "%s: dblock->block_off = %Hu\n", FUNC, dblock->block_off);
#endif /* QAK */
UINT64ENCODE_VAR(id, (dblock->block_off + obj_off), hdr->heap_off_size);
UINT64ENCODE_VAR(id, obj_size, hdr->id_len);
} /* end if */
else {
HGOTO_ERROR(H5E_HEAP, H5E_UNSUPPORTED, FAIL, "inserting within mapped managed blocks not supported yet")
} /* end else */
/* Update statistics about heap */
hdr->nobjs++;
/* Mark heap header as modified */
if(H5HF_hdr_dirty(dxpl_id, hdr) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTDIRTY, FAIL, "can't mark heap header as dirty")
done:
/* Release the direct block (marked as dirty) */
if(dblock && H5AC_unprotect(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, dblock_addr, dblock, H5AC__DIRTIED_FLAG) < 0)
HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap direct block")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_insert() */
/*-------------------------------------------------------------------------
* Function: H5HF_man_read
*
* Purpose: Read an object from a managed heap
*
* Return: SUCCEED/FAIL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 17 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5HF_man_read(H5HF_t *hdr, hid_t dxpl_id, hsize_t obj_off, size_t obj_len, void *obj)
{
H5HF_direct_t *dblock; /* Pointer to direct block to query */
size_t blk_off; /* Offset of object in block */
uint8_t *p; /* Temporary pointer to obj info in block */
haddr_t dblock_addr; /* Direct block address */
size_t dblock_size; /* Direct block size */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5HF_man_read)
#ifdef QAK
HDfprintf(stderr, "%s: obj_off = %Hu, obj_len = %Zu\n", FUNC, obj_off, obj_len);
#endif /* QAK */
/*
* Check arguments.
*/
HDassert(hdr);
HDassert(obj_off > 0);
HDassert(obj);
/* Check for root direct block */
if(hdr->man_dtable.curr_root_rows == 0) {
/* Set direct block info */
dblock_addr = hdr->man_dtable.table_addr;
dblock_size = hdr->man_dtable.cparam.start_block_size;
/* Lock direct block */
if(NULL == (dblock = H5AC_protect(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, dblock_addr, &dblock_size, hdr, H5AC_READ)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap direct block")
} /* end if */
else {
haddr_t iblock_addr; /* Indirect block's address */
H5HF_indirect_t *iblock; /* Pointer to indirect block */
unsigned row, col; /* Row & column for object's block */
size_t entry; /* Entry of block */
/* Look up row & column for object */
if(H5HF_dtable_lookup(&hdr->man_dtable, obj_off, &row, &col) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTCOMPUTE, FAIL, "can't compute row & column of object")
#ifdef QAK
HDfprintf(stderr, "%s: row = %u, col = %u\n", FUNC, row, col);
#endif /* QAK */
/* Set initial indirect block info */
iblock_addr = hdr->man_dtable.table_addr;
#ifdef QAK
HDfprintf(stderr, "%s: iblock_addr = %a\n", FUNC, iblock_addr);
#endif /* QAK */
/* Lock indirect block */
if(NULL == (iblock = H5AC_protect(hdr->f, dxpl_id, H5AC_FHEAP_IBLOCK, iblock_addr, &hdr->man_dtable.curr_root_rows, hdr, H5AC_READ)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap indirect block")
/* Check for indirect block row */
while(row >= hdr->man_dtable.max_direct_rows) {
haddr_t new_iblock_addr; /* New indirect block's address */
H5HF_indirect_t *new_iblock; /* Pointer to new indirect block */
unsigned nrows; /* Number of rows in new indirect block */
/* Compute # of rows in child indirect block */
nrows = (H5V_log2_gen(hdr->man_dtable.row_block_size[row]) - hdr->man_dtable.first_row_bits) + 1;
/* Compute indirect block's entry */
entry = (row * hdr->man_dtable.cparam.width) + col;
#ifdef QAK
HDfprintf(stderr, "%s: entry = %Zu\n", FUNC, entry);
#endif /* QAK */
/* Locate child indirect block */
new_iblock_addr = iblock->ents[entry].addr;
/* Lock new indirect block */
if(NULL == (new_iblock = H5AC_protect(hdr->f, dxpl_id, H5AC_FHEAP_IBLOCK, new_iblock_addr, &nrows, hdr, H5AC_READ)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap indirect block")
/* Release the current indirect block */
if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_FHEAP_IBLOCK, iblock_addr, iblock, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block")
/* Switch variables to use new indirect block */
iblock = new_iblock;
iblock_addr = new_iblock_addr;
#ifdef QAK
HDfprintf(stderr, "%s: iblock_addr = %a\n", FUNC, iblock_addr);
HDfprintf(stderr, "%s: iblock->block_off = %Hu\n", FUNC, iblock->block_off);
#endif /* QAK */
/* Look up row & column in new indirect block for object */
if(H5HF_dtable_lookup(&hdr->man_dtable, (obj_off - iblock->block_off), &row, &col) < 0)
HGOTO_ERROR(H5E_HEAP, H5E_CANTCOMPUTE, FAIL, "can't compute row & column of object")
#ifdef QAK
HDfprintf(stderr, "%s: row = %u, col = %u\n", FUNC, row, col);
#endif /* QAK */
} /* end while */
/* Compute direct block's entry */
entry = (row * hdr->man_dtable.cparam.width) + col;
#ifdef QAK
HDfprintf(stderr, "%s: entry address = %a\n", FUNC, iblock->ents[entry].addr);
#endif /* QAK */
/* Set direct block info */
dblock_addr = iblock->ents[entry].addr;
dblock_size = hdr->man_dtable.row_block_size[row];
/* Lock direct block */
if(NULL == (dblock = H5AC_protect(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, dblock_addr, &dblock_size, hdr, H5AC_READ)))
HGOTO_ERROR(H5E_HEAP, H5E_CANTPROTECT, FAIL, "unable to protect fractal heap direct block")
/* Unlock indirect block */
if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_FHEAP_IBLOCK, iblock_addr, iblock, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap indirect block")
iblock = NULL;
} /* end else */
#ifdef QAK
HDfprintf(stderr, "%s: dblock_addr = %a, dblock_size = %Zu\n", FUNC, dblock_addr, dblock_size);
#endif /* QAK */
/* Compute offset of object within block */
HDassert((obj_off - dblock->block_off) < (hsize_t)dblock_size);
blk_off = (size_t)(obj_off - dblock->block_off);
/* Point to location for object */
p = dblock->blk + blk_off;
/* Skip over the free fragment size */
p++;
/* Copy the object's data into the heap */
HDmemcpy(obj, p, obj_len);
/* Unlock direct block */
if(H5AC_unprotect(hdr->f, dxpl_id, H5AC_FHEAP_DBLOCK, dblock_addr, dblock, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_HEAP, H5E_CANTUNPROTECT, FAIL, "unable to release fractal heap direct block")
dblock = NULL;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5HF_man_read() */
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