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|
/*-------------------------------------------------------------------------
* Copyright (C) 1997 National Center for Supercomputing Applications.
* All rights reserved.
*
*-------------------------------------------------------------------------
*
* Created: H5O.c
* Aug 5 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Object header virtual functions.
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
#include <H5private.h>
#include <H5ACprivate.h>
#include <H5Eprivate.h>
#include <H5Fprivate.h>
#include <H5MFprivate.h>
#include <H5MMprivate.h>
#include <H5Oprivate.h>
#define PABLO_MASK H5O_mask
/* PRIVATE PROTOTYPES */
static herr_t H5O_flush (hdf5_file_t *f, hbool_t destroy, haddr_t addr,
H5O_t *oh);
static H5O_t *H5O_load (hdf5_file_t *f, haddr_t addr, void *_data);
static intn H5O_find_in_ohdr (hdf5_file_t *f, haddr_t addr,
const H5O_class_t **type_p, intn sequence);
static intn H5O_alloc (hdf5_file_t *f, H5O_t *oh, const H5O_class_t *type,
size_t size);
static intn H5O_alloc_extend_chunk (H5O_t *oh, intn chunkno, size_t size);
static intn H5O_alloc_new_chunk (hdf5_file_t *f, H5O_t *oh, size_t size);
/* H5O inherits cache-like properties from H5AC */
static const H5AC_class_t H5AC_OHDR[1] = {{
(void*(*)(hdf5_file_t*,haddr_t,void*))H5O_load,
(herr_t(*)(hdf5_file_t*,hbool_t,haddr_t,void*))H5O_flush,
}};
/* Is the interface initialized? */
static intn interface_initialize_g = FALSE;
/* ID to type mapping */
static const H5O_class_t *const message_type_g[] = {
H5O_NULL, /*0x0000 Null */
H5O_SIM_DIM, /*0x0001 Simple dimensionality */
NULL, /*0x0002 Data space (fiber bundle?) */
H5O_SIM_DTYPE, /*0x0003 Simple data type */
NULL, /*0x0004 Compound data type */
H5O_STD_STORE, /*0x0005 Data storage -- standard object */
NULL, /*0x0006 Data storage -- compact object */
NULL, /*0x0007 Data storage -- external object */
NULL, /*0x0008 Data storage -- indexed object */
NULL, /*0x0009 Data storage -- chunked object */
NULL, /*0x000A Data storage -- sparse object */
NULL, /*0x000B Data storage -- compressed object */
NULL, /*0x000C Attribute list */
H5O_NAME, /*0x000D Object name */
NULL, /*0x000E Object modification date and time */
NULL, /*0x000F Shared header message */
H5O_CONT, /*0x0010 Object header continuation */
H5O_STAB, /*0x0011 Symbol table */
};
/*-------------------------------------------------------------------------
* Function: H5O_new
*
* Purpose: Creates a new object header, sets the link count
* to NLINK, and caches the header.
*
* Return: Success: Address of new header.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
haddr_t
H5O_new (hdf5_file_t *f, intn nlink, size_t size_hint)
{
size_t size; /*total size of object header */
haddr_t addr = FAIL; /*address of object header */
H5O_t *oh = NULL;
FUNC_ENTER (H5O_new, NULL, FAIL);
/* check args */
assert (f);
assert (nlink>=0);
if (size_hint<H5O_MIN_SIZE) size_hint = H5O_MIN_SIZE;
H5O_ALIGN (size_hint, H5O_ALIGNMENT);
/* allocate disk space for header and first chunk */
size = H5O_SIZEOF_HDR(f) + size_hint;
if ((addr = H5MF_alloc (f, size))<0) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL);
}
/* allocate the object header in fill in header fields */
oh = H5MM_xcalloc (1, sizeof(H5O_t));
oh->dirty = TRUE;
oh->version = H5O_VERSION;
oh->alignment = H5O_ALIGNMENT;
oh->nlink = nlink;
/* create the chunk list and initialize the first chunk */
oh->nchunks = 1;
oh->alloc_nchunks = H5O_NCHUNKS;
oh->chunk = H5MM_xmalloc (oh->alloc_nchunks * sizeof (H5O_chunk_t));
oh->chunk[0].dirty = TRUE;
oh->chunk[0].addr = addr + H5O_SIZEOF_HDR(f);
oh->chunk[0].size = size_hint;
oh->chunk[0].image = H5MM_xcalloc (1, size_hint);
/* create the message list and initialize the first message */
oh->nmesgs = 1;
oh->alloc_nmesgs = H5O_NMESGS;
oh->mesg = H5MM_xcalloc (oh->alloc_nmesgs, sizeof(H5O_mesg_t));
oh->mesg[0].type = H5O_NULL;
oh->mesg[0].dirty = TRUE;
oh->mesg[0].native = NULL;
oh->mesg[0].raw = oh->chunk[0].image + 4; /*skip id and size fields */
oh->mesg[0].raw_size = size_hint - 4;
oh->mesg[0].chunkno = 0;
/* cache it */
if (H5AC_set (f, H5AC_OHDR, addr, oh)<0) {
H5MM_xfree (oh);
HRETURN_ERROR (H5E_OHDR, H5E_CANTINIT, FAIL);
}
FUNC_LEAVE (addr);
}
/*-------------------------------------------------------------------------
* Function: H5O_load
*
* Purpose: Loads an object header from disk.
*
* Return: Success: Pointer to the new object header.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
* Modifications:
*
* Robb Matzke, 30 Aug 1997
* Plugged memory leaks that occur during error handling.
*
*-------------------------------------------------------------------------
*/
static H5O_t *
H5O_load (hdf5_file_t *f, haddr_t addr, void *_data)
{
H5O_t *oh = NULL;
H5O_t *ret_value = (void*)1; /*kludge for HGOTO_ERROR*/
uint8 buf[16], *p;
size_t hdr_size, mesg_size;
uintn id;
intn mesgno, chunkno, curmesg=0, nmesgs;
haddr_t chunk_addr;
size_t chunk_size;
H5O_cont_t *cont=NULL;
FUNC_ENTER (H5O_load, NULL, NULL);
/* check args */
assert (f);
assert (addr>=0);
assert (!_data);
/* allocate ohdr and init chunk list */
oh = H5MM_xcalloc (1, sizeof(H5O_t));
/* read fixed-lenth part of object header */
hdr_size = H5O_SIZEOF_HDR (f);
if (H5F_block_read (f, addr, hdr_size, buf)<0) {
HGOTO_ERROR (H5E_OHDR, H5E_READERROR, NULL);
}
p = buf;
/* decode version */
oh->version = *p++;
if (H5O_VERSION!=oh->version) {
HGOTO_ERROR (H5E_OHDR, H5E_VERSION, NULL);
}
/* decode alignment */
oh->alignment = *p++;
if (4!=oh->alignment) {
HGOTO_ERROR (H5E_OHDR, H5E_ALIGNMENT, NULL);
}
/* decode number of messages */
UINT16DECODE (p, nmesgs);
/* decode link count */
UINT32DECODE (p, oh->nlink);
/* decode first chunk info */
chunk_addr = addr + H5O_SIZEOF_HDR(f);
UINT32DECODE (p, chunk_size);
/* build the message array */
oh->alloc_nmesgs = MAX (H5O_NMESGS, nmesgs);
oh->mesg = H5MM_xcalloc (oh->alloc_nmesgs, sizeof(H5O_mesg_t));
/* read each chunk from disk */
while (chunk_addr) {
/* increase chunk array size */
if (oh->nchunks>=oh->alloc_nchunks) {
oh->alloc_nchunks += H5O_NCHUNKS;
oh->chunk = H5MM_xrealloc (oh->chunk,
oh->alloc_nchunks * sizeof(H5O_chunk_t));
}
/* read the chunk raw data */
chunkno = oh->nchunks++;
oh->chunk[chunkno].dirty = FALSE;
oh->chunk[chunkno].addr = chunk_addr;
oh->chunk[chunkno].size = chunk_size;
oh->chunk[chunkno].image = H5MM_xmalloc (chunk_size);
if (H5F_block_read (f, chunk_addr, chunk_size,
oh->chunk[chunkno].image)<0) {
HGOTO_ERROR (H5E_OHDR, H5E_READERROR, NULL);
}
/* load messages from this chunk */
for (p = oh->chunk[chunkno].image;
p < oh->chunk[chunkno].image + chunk_size;
p += mesg_size) {
UINT16DECODE (p, id);
UINT16DECODE (p, mesg_size);
if (id>=NELMTS(message_type_g) || NULL==message_type_g[id]) {
HGOTO_ERROR (H5E_OHDR, H5E_BADMESG, NULL);
}
if (p + mesg_size > oh->chunk[chunkno].image + chunk_size) {
HGOTO_ERROR (H5E_OHDR, H5E_CANTINIT, NULL);
}
if (H5O_NULL_ID==id && oh->nmesgs>0 &&
H5O_NULL_ID==oh->mesg[oh->nmesgs-1].type->id &&
oh->mesg[oh->nmesgs-1].chunkno==chunkno) {
/* combine adjacent null messages */
mesgno = oh->nmesgs - 1;
oh->mesg[mesgno].raw_size += 4 + mesg_size;
} else {
/* new message */
if (oh->nmesgs>=nmesgs) {
HGOTO_ERROR (H5E_OHDR, H5E_CANTLOAD, NULL);
}
mesgno = oh->nmesgs++;
oh->mesg[mesgno].type = message_type_g[id];
oh->mesg[mesgno].dirty = FALSE;
oh->mesg[mesgno].native = NULL;
oh->mesg[mesgno].raw = p;
oh->mesg[mesgno].raw_size = mesg_size;
oh->mesg[mesgno].chunkno = chunkno;
}
}
assert (p == oh->chunk[chunkno].image + chunk_size);
/* decode next object header continuation message */
for (chunk_addr=0; 0==chunk_addr && curmesg<oh->nmesgs; curmesg++) {
if (H5O_CONT_ID==oh->mesg[curmesg].type->id) {
uint8 *p2 = oh->mesg[curmesg].raw;
cont = (H5O_CONT->decode)(f, oh->mesg[curmesg].raw_size, p2);
oh->mesg[curmesg].native = cont;
chunk_addr = cont->addr;
chunk_size = cont->size;
cont->chunkno = oh->nchunks; /*the next chunk to allocate*/
}
}
}
done:
if (!ret_value && oh) {
/*
* Free resources.
*/
int i;
for (i=0; i<oh->nchunks; i++) {
oh->chunk[i].image = H5MM_xfree (oh->chunk[i].image);
}
oh->chunk = H5MM_xfree (oh->chunk);
oh->mesg = H5MM_xfree (oh->mesg);
oh = H5MM_xfree (oh);
}
FUNC_LEAVE (oh);
}
/*-------------------------------------------------------------------------
* Function: H5O_flush
*
* Purpose: Flushes (and destroys) an object header.
*
* Return: Success: SUCCESS
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_flush (hdf5_file_t *f, hbool_t destroy, haddr_t addr, H5O_t *oh)
{
uint8 buf[16], *p;
int i;
H5O_cont_t *cont = NULL;
FUNC_ENTER (H5O_flush, NULL, FAIL);
/* check args */
assert (f);
assert (addr>=0);
assert (oh);
/* flush */
if (oh->dirty) {
p = buf;
/* encode version */
*p++ = oh->version;
/* encode alingment */
*p++ = oh->alignment;
/* encode number of messages */
UINT16ENCODE (p, oh->nmesgs);
/* encode link count */
UINT32ENCODE (p, oh->nlink);
/* encode body size */
UINT32ENCODE (p, oh->chunk[0].size);
/* write the object header header */
if (H5F_block_write (f, addr, H5O_SIZEOF_HDR(f), buf)<0) {
HRETURN_ERROR (H5E_OHDR, H5E_WRITEERROR, FAIL);
}
/* encode messages */
for (i=0; i<oh->nmesgs; i++) {
if (oh->mesg[i].dirty) {
p = oh->mesg[i].raw - 4;
UINT16ENCODE (p, oh->mesg[i].type->id);
UINT16ENCODE (p, oh->mesg[i].raw_size);
if (oh->mesg[i].native) {
assert (oh->mesg[i].type->encode);
/* allocate file space for chunks that have none yet */
if (H5O_CONT_ID==oh->mesg[i].type->id &&
((H5O_cont_t*)(oh->mesg[i].native))->addr<0) {
cont = (H5O_cont_t*)(oh->mesg[i].native);
assert (cont->chunkno >= 0);
assert (cont->chunkno < oh->nchunks);
assert (oh->chunk[cont->chunkno].addr<0);
cont->size = oh->chunk[cont->chunkno].size;
cont->addr = H5MF_alloc (f, cont->size);
if (cont->addr<0) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL);
}
oh->chunk[cont->chunkno].addr = cont->addr;
}
/* encode the message */
assert (oh->mesg[i].raw >=
oh->chunk[oh->mesg[i].chunkno].image);
assert (oh->mesg[i].raw + oh->mesg[i].raw_size <=
oh->chunk[oh->mesg[i].chunkno].image +
oh->chunk[oh->mesg[i].chunkno].size);
if ((oh->mesg[i].type->encode)(f, oh->mesg[i].raw_size,
oh->mesg[i].raw,
oh->mesg[i].native)<0) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTENCODE, FAIL);
}
}
oh->mesg[i].dirty = FALSE;
oh->chunk[oh->mesg[i].chunkno].dirty = TRUE;
}
}
/* write each chunk to disk */
for (i=0; i<oh->nchunks; i++) {
if (oh->chunk[i].dirty) {
assert (oh->chunk[i].addr>0);
if (H5F_block_write (f, oh->chunk[i].addr, oh->chunk[i].size,
oh->chunk[i].image)<0) {
HRETURN_ERROR (H5E_OHDR, H5E_WRITEERROR, FAIL);
}
oh->chunk[i].dirty = FALSE;
}
}
oh->dirty = FALSE;
}
if (destroy) {
/* destroy chunks */
for (i=0; i<oh->nchunks; i++) {
oh->chunk[i].image = H5MM_xfree (oh->chunk[i].image);
}
oh->chunk = H5MM_xfree (oh->chunk);
/* destroy messages */
for (i=0; i<oh->nmesgs; i++) {
H5O_reset (oh->mesg[i].type, oh->mesg[i].native);
oh->mesg[i].native = H5MM_xfree (oh->mesg[i].native);
}
oh->mesg = H5MM_xfree (oh->mesg);
/* destroy object header */
H5MM_xfree (oh);
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5O_reset
*
* Purpose: Some message data structures have internal fields that
* need to be freed. This function does that if appropriate
* but doesn't free NATIVE.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* robb@maya.nuance.com
* Aug 12 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_reset (const H5O_class_t *type, void *native)
{
FUNC_ENTER (H5O_reset, NULL, FAIL);
if (native) {
if (type->reset) {
if ((type->reset)(native)<0) {
/* reset class method failed */
HRETURN_ERROR (H5E_OHDR, H5E_CANTINIT, FAIL);
}
} else {
HDmemset (native, 0, type->native_size);
}
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5O_link
*
* Purpose: Adjust the link count for an object header by adding
* ADJUST to the link count.
*
* Return: Success: New link count
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
intn
H5O_link (hdf5_file_t *f, haddr_t addr, H5G_entry_t *ent, intn adjust)
{
H5O_t *oh = NULL;
FUNC_ENTER (H5O_link, NULL, FAIL);
/* check args */
assert (f);
assert (addr>0 || (ent && ent->header>0));
if (addr<=0) addr = ent->header;
/* get header */
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, FAIL);
}
/* adjust link count */
if (adjust<0) {
if (oh->nlink + adjust < 0) {
HRETURN_ERROR (H5E_OHDR, H5E_LINKCOUNT, FAIL);
}
oh->nlink += adjust;
if (1==oh->nlink && ent) {
fprintf (stderr, "H5O_link: no symbol table entry caching "
"(not implemented yet)\n");
}
} else {
oh->nlink += adjust;
if (oh->nlink>1 && ent && H5G_NOTHING_CACHED!=ent->type) {
ent->dirty = TRUE;
ent->type = H5G_NOTHING_CACHED;
}
}
oh->dirty = TRUE;
FUNC_LEAVE (oh->nlink);
}
/*-------------------------------------------------------------------------
* Function: H5O_read
*
* Purpose: Reads a message from an object header and returns a pointer
* to it. The caller will usually supply the memory through
* MESG and the return value will be MESG. But if MESG is
* the null pointer, then this function will malloc() memory
* to hold the result and return its pointer instead.
*
* Return: Success: Ptr to message in native format.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void *
H5O_read (hdf5_file_t *f, haddr_t addr, H5G_entry_t *ent,
const H5O_class_t *type, intn sequence, void *mesg)
{
H5O_t *oh = NULL;
void *retval = NULL;
intn idx;
FUNC_ENTER (H5O_read, NULL, NULL);
/* check args */
assert (f);
if (addr<=0 && (!ent || ent->header<=0)) {
HRETURN_ERROR (H5E_OHDR, H5E_NOTFOUND, NULL);
}
if (addr<=0) addr = ent->header;
assert (sequence>=0);
/* can we get it from the symbol table? */
if (ent && H5G_NOTHING_CACHED!=ent->type && type && type->fast) {
retval = (type->fast)(ent, mesg);
if (retval) HRETURN (retval);
H5ECLEAR;
}
/* can we get it from the object header? */
if ((idx = H5O_find_in_ohdr (f, addr, &type, sequence))<0) {
HRETURN_ERROR (H5E_OHDR, H5E_NOTFOUND, NULL);
}
#ifdef LATER
/* should we cache it in ENT? */
#endif
/* copy the message to the user-supplied buffer */
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, NULL);
}
retval = (type->copy)(oh->mesg[idx].native, mesg);
if (!retval) HRETURN_ERROR (H5E_OHDR, H5E_CANTINIT, NULL);
FUNC_LEAVE (retval);
}
/*-------------------------------------------------------------------------
* Function: H5O_find_in_ohdr
*
* Purpose: Find a message in the object header without consulting
* a symbol table entry.
*
* Return: Success: Index number of message.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5O_find_in_ohdr (hdf5_file_t *f, haddr_t addr, const H5O_class_t **type_p,
intn sequence)
{
H5O_t *oh = NULL;
int i;
FUNC_ENTER (H5O_find_in_ohdr, NULL, FAIL);
/* check args */
assert (f);
assert (addr>=0);
assert (type_p);
/* load the object header */
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, FAIL);
}
/* scan through the messages looking for the right one */
for (i=0; i<oh->nmesgs; i++) {
if (*type_p && (*type_p)->id!=oh->mesg[i].type->id) continue;
if (--sequence<0) break;
}
if (sequence>=0) HRETURN_ERROR (H5E_OHDR, H5E_NOTFOUND, FAIL);
/* decode the message if necessary */
if (NULL==oh->mesg[i].native) {
assert (oh->mesg[i].type->decode);
oh->mesg[i].native = (oh->mesg[i].type->decode)(f,
oh->mesg[i].raw_size,
oh->mesg[i].raw);
if (NULL==oh->mesg[i].native) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTDECODE, FAIL);
}
}
/*return the message type */
*type_p = oh->mesg[i].type;
FUNC_LEAVE (i);
}
/*-------------------------------------------------------------------------
* Function: H5O_peek
*
* Purpose: Returns a pointer to a message stored in native format.
* The returned memory is read-only, and points directly into
* the cache. It is therefore valid only until the next cache
* function is called.
*
* Return: Success: Ptr to read-only message in native format.
* The pointer is guranteed to be valid only
* until the next call (directly or indirectly)
* to an H5AC function.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
const void *
H5O_peek (hdf5_file_t *f, haddr_t addr, const H5O_class_t *type,
intn sequence)
{
intn idx;
H5O_t *oh = NULL;
FUNC_ENTER (H5O_peek, NULL, NULL);
/* check args */
assert (f);
assert (addr>0);
if ((idx = H5O_find_in_ohdr (f, addr, &type, sequence))<0) {
HRETURN_ERROR (H5E_OHDR, H5E_NOTFOUND, NULL);
}
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, NULL);
}
FUNC_LEAVE (oh->mesg[idx].native);
}
/*-------------------------------------------------------------------------
* Function: H5O_modify
*
* Purpose: Modifies an existing message or creates a new message.
* The object header is at file address ADDR of file F (but if
* ENT is present then its `header' field is used instead). An
* optional symbol table entry ENT can be supplied in which
* case the cache fields in that symbol table are updated if
* appropriate.
*
* The OVERWRITE argument is either a sequence number of a
* message to overwrite (usually zero) or the constant
* H5O_NEW_MESSAGE (-1) to indicate that a new message is to
* be created. If the message to overwrite doesn't exist then
* it is created (but only if it can be inserted so its sequence
* number is OVERWRITE; that is, you can create a message with
* the sequence number 5 if there is no message with sequence
* number 4).
*
* Return: Success: The sequence number of the message that
* was modified or created.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
intn
H5O_modify (hdf5_file_t *f, haddr_t addr, H5G_entry_t *ent,
const H5O_class_t *type, intn overwrite, const void *mesg)
{
H5O_t *oh = NULL;
intn idx, sequence;
size_t size;
FUNC_ENTER (H5O_modify, NULL, FAIL);
/* check args */
assert (f);
assert (addr>0 || (ent && ent->header>0));
assert (type);
assert (mesg);
if (addr<=0) addr = ent->header;
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, FAIL);
}
/* Count similar messages */
for (idx=0,sequence=-1; idx<oh->nmesgs; idx++) {
if (type->id != oh->mesg[idx].type->id) continue;
if (++sequence==overwrite) break;
}
/* Was the right message found? */
if (overwrite>=0 &&
(idx>=oh->nmesgs || sequence!=overwrite)) {
/* But can we insert a new one with this sequence number? */
if (overwrite==sequence+1) {
overwrite = -1;
} else {
HRETURN_ERROR (H5E_OHDR, H5E_NOTFOUND, FAIL); /*message not found*/
}
}
/* Allocate space for the new message */
if (overwrite<0) {
size = (type->raw_size)(f, mesg);
H5O_ALIGN (size, oh->alignment);
idx = H5O_alloc (f, oh, type, size);
if (idx<0) HRETURN_ERROR (H5E_OHDR, H5E_CANTINIT, FAIL);
sequence++;
}
/* Copy the native value into the object header */
oh->mesg[idx].native = (type->copy)(mesg, oh->mesg[idx].native);
if (NULL==oh->mesg[idx].native) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTINIT, FAIL);
}
oh->mesg[idx].dirty = TRUE;
oh->dirty = TRUE;
/* Copy into the symbol table entry */
if (oh->nlink<=1 && ent && type->cache) {
hbool_t modified = (type->cache)(ent, mesg);
if (ent && !ent->dirty) ent->dirty = modified;
}
FUNC_LEAVE (sequence);
}
/*-------------------------------------------------------------------------
* Function: H5O_remove
*
* Purpose: Removes the specified message from the object header.
* If sequence is H5O_ALL (-1) then all messages of the
* specified type are removed. Removing a message causes
* the sequence numbers to change for subsequent messages of
* the same type.
*
* If the messaage was cached in the symbol table entry then
* the type field of the symbol table entry is changed to
* H5G_NOTHING_CACHED and the ENT_MODIFIED argument will point
* to non-zero (the ENT_MODIFIED argument is unchanged if
* the ENT type field doesn't change).
*
* No attempt is made to join adjacent free areas of the
* object header into a single larger free area.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* robb@maya.nuance.com
* Aug 28 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_remove (hdf5_file_t *f, haddr_t addr, H5G_entry_t *ent,
const H5O_class_t *type, intn sequence)
{
H5O_t *oh = NULL;
intn i, seq;
FUNC_ENTER (H5O_remove, NULL, FAIL);
/* check args */
assert (f);
assert (addr>0 || (ent && ent->header>0));
assert (type);
if (addr<=0) addr = ent->header;
/* load the object header */
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, FAIL);
}
for (i=seq=0; i<oh->nmesgs; i++) {
if (type->id != oh->mesg[i].type->id) continue;
if (seq++ == sequence || H5O_ALL==sequence) {
/* clear symbol table entry cache */
if (ent && type->cache && type->cache_type==ent->type) {
ent->type = H5G_NOTHING_CACHED;
ent->dirty = TRUE;
}
/* change message type to nil and zero it */
oh->mesg[i].type = H5O_NULL;
HDmemset (oh->mesg[i].raw, 0, oh->mesg[i].raw_size);
H5O_reset (type, oh->mesg[i].native);
oh->mesg[i].native = H5MM_xfree (oh->mesg[i].native);
oh->mesg[i].dirty = TRUE;
oh->dirty = TRUE;
}
}
FUNC_LEAVE (SUCCEED);
}
/*-------------------------------------------------------------------------
* Function: H5O_alloc_extend_chunk
*
* Purpose: Extends a chunk which hasn't been allocated on disk yet
* to make the chunk large enough to contain a message whose
* data size is at least SIZE bytes.
*
* If the last message of the chunk is the null message, then
* that message will be extended with the chunk. Otherwise a
* new null message is created.
*
* Return: Success: Message index for null message which
* is large enough to hold SIZE bytes.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 7 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5O_alloc_extend_chunk (H5O_t *oh, intn chunkno, size_t size)
{
intn idx, i;
size_t delta;
uint8 *old_addr;
FUNC_ENTER (H5O_alloc_extend_chunk, NULL, FAIL);
/* check args */
assert (oh);
assert (chunkno>=0 && chunkno<oh->nchunks);
assert (size>0);
if (H5O_NO_ADDR!=oh->chunk[chunkno].addr) {
HRETURN_ERROR (H5E_OHDR, H5E_NOSPACE, FAIL); /*chunk is on disk*/
}
/* try to extend a null message */
for (idx=0; idx<oh->nmesgs; idx++) {
if (H5O_NULL_ID==oh->mesg[idx].type->id &&
(oh->mesg[idx].raw + oh->mesg[idx].raw_size ==
oh->chunk[chunkno].image + oh->chunk[chunkno].size)) {
delta = MAX (H5O_MIN_SIZE, size-oh->mesg[idx].raw_size);
H5O_ALIGN (delta, oh->alignment);
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].raw_size += delta;
old_addr = oh->chunk[chunkno].image;
/* Be careful not to indroduce garbage */
oh->chunk[chunkno].image = H5MM_xrealloc (old_addr,
(oh->chunk[chunkno].size +
delta));
HDmemset (oh->chunk[chunkno].image + oh->chunk[chunkno].size,
0, delta);
oh->chunk[chunkno].size += delta;
/* adjust raw addresses for messages of this chunk */
if (old_addr != oh->chunk[chunkno].image) {
for (i=0; i<oh->nmesgs; i++) {
if (oh->mesg[i].chunkno==chunkno) {
oh->mesg[i].raw = oh->chunk[chunkno].image +
(oh->mesg[i].raw - old_addr);
}
}
}
HRETURN (idx);
}
}
/* create a new null message */
if (oh->nmesgs >= oh->alloc_nmesgs) {
oh->alloc_nmesgs += H5O_NMESGS;
oh->mesg = H5MM_xrealloc (oh->mesg,
oh->alloc_nmesgs * sizeof(H5O_mesg_t));
}
delta = MAX (H5O_MIN_SIZE, 4+size);
H5O_ALIGN (delta, oh->alignment);
idx = oh->nmesgs++;
oh->mesg[idx].type = H5O_NULL;
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->mesg[idx].raw = oh->chunk[chunkno].image + oh->chunk[chunkno].size + 4;
oh->mesg[idx].raw_size = delta-4;
oh->mesg[idx].chunkno = chunkno;
old_addr = oh->chunk[chunkno].image;
oh->chunk[chunkno].size += delta;
oh->chunk[chunkno].image = H5MM_xrealloc (old_addr,
oh->chunk[chunkno].size);
/* adjust raw addresses for messages of this chunk */
if (old_addr != oh->chunk[chunkno].image) {
for (i=0; i<oh->nmesgs; i++) {
if (oh->mesg[i].chunkno==chunkno) {
oh->mesg[i].raw = oh->chunk[chunkno].image +
(oh->mesg[i].raw - old_addr);
}
}
}
FUNC_LEAVE (idx);
}
/*-------------------------------------------------------------------------
* Function: H5O_alloc_new_chunk
*
* Purpose: Allocates a new chunk for the object header but doen't
* give the new chunk a file address yet. One of the other
* chunks will get an object continuation message. If there
* isn't room in any other chunk for the object continuation
* message, then some message from another chunk is moved into
* this chunk to make room.
*
* Return: Success: Index number of the null message for the
* new chunk. The null message will be at
* least SIZE bytes not counting the message
* ID or size fields.
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 7 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5O_alloc_new_chunk (hdf5_file_t *f, H5O_t *oh, size_t size)
{
size_t cont_size; /*continuation message size */
intn found_null=(-1); /*best fit null message */
intn found_other=(-1); /*best fit other message */
intn idx=FAIL; /*message number return value */
uint8 *p = NULL; /*ptr into new chunk */
H5O_cont_t *cont = NULL; /*native continuation message */
intn i, chunkno;
FUNC_ENTER (H5O_alloc_new_chunk, NULL, FAIL);
/* check args */
assert (oh);
assert (size>0);
/*
* Find the smallest null message that will hold an object
* continuation message. Failing that, find the smallest message
* that could be moved to make room for the continuation message.
* Don't ever move continuation message from one chunk to another.
*/
cont_size = H5F_SIZEOF_OFFSET(f) + H5F_SIZEOF_SIZE(f);
for (i=0; i<oh->nmesgs; i++) {
if (H5O_NULL_ID == oh->mesg[i].type->id) {
if (cont_size == oh->mesg[i].raw_size) {
found_null = i;
break;
} else if (oh->mesg[i].raw_size >= cont_size &&
(found_null<0 ||
oh->mesg[i].raw_size < oh->mesg[found_null].raw_size)) {
found_null = i;
}
} else if (H5O_CONT_ID == oh->mesg[i].type->id) {
/*don't consider continuation messages */
} else if (oh->mesg[i].raw_size >= cont_size &&
(found_other<0 ||
oh->mesg[i].raw_size < oh->mesg[found_other].raw_size)) {
found_other = i;
}
}
assert (found_null>=0 || found_other>=0);
/*
* If we must move some other message to make room for the null
* message, then make sure the new chunk has enough room for that
* other message.
*/
if (found_null<0) size += 4 + oh->mesg[found_other].raw_size;
/*
* The total chunk size must include the requested space plus enough
* for the message header. This must be at least some minimum and a
* multiple of the alignment size.
*/
size = MAX (H5O_MIN_SIZE, size+4);
H5O_ALIGN (size, oh->alignment);
/*
* Create the new chunk without giving it a file address.
*/
if (oh->nchunks >= oh->alloc_nchunks) {
oh->alloc_nchunks += H5O_NCHUNKS;
oh->chunk = H5MM_xrealloc (oh->chunk,
oh->alloc_nchunks * sizeof(H5O_chunk_t));
}
chunkno = oh->nchunks++;
oh->chunk[chunkno].dirty = TRUE;
oh->chunk[chunkno].addr = H5O_NO_ADDR;
oh->chunk[chunkno].size = size;
oh->chunk[chunkno].image = p = H5MM_xcalloc (1, size);
/*
* Make sure we have enough space for all possible new messages
* that could be generated below.
*/
if (oh->nmesgs+3 > oh->alloc_nmesgs) {
oh->alloc_nmesgs += MAX (H5O_NMESGS, 3);
oh->mesg = H5MM_xrealloc (oh->mesg,
oh->alloc_nmesgs * sizeof(H5O_mesg_t));
}
/*
* Describe the messages of the new chunk.
*/
if (found_null<0) {
found_null = i = oh->nmesgs++;
oh->mesg[i].type = H5O_NULL;
oh->mesg[i].dirty = TRUE;
oh->mesg[i].native = NULL;
oh->mesg[i].raw = oh->mesg[found_other].raw;
oh->mesg[i].raw_size = oh->mesg[found_other].raw_size;
oh->mesg[i].chunkno = oh->mesg[found_other].chunkno;
oh->mesg[found_other].dirty = TRUE;
oh->mesg[found_other].raw = p+4;
oh->mesg[found_other].chunkno = chunkno;
p += 4 + oh->mesg[found_other].raw_size;
size -= 4 + oh->mesg[found_other].raw_size;
}
idx = oh->nmesgs++;
oh->mesg[idx].type = H5O_NULL;
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->mesg[idx].raw = p+4;
oh->mesg[idx].raw_size = size-4;
oh->mesg[idx].chunkno = chunkno;
/*
* If the null message that will receive the continuation message
* is larger than the continuation message, then split it into
* two null messages.
*/
if (oh->mesg[found_null].raw_size > cont_size) {
i = oh->nmesgs++;
oh->mesg[i].type = H5O_NULL;
oh->mesg[i].dirty = TRUE;
oh->mesg[i].native = NULL;
oh->mesg[i].raw = oh->mesg[found_null].raw + cont_size + 4;
oh->mesg[i].raw_size = oh->mesg[found_null].raw_size - (cont_size+4);
oh->mesg[i].chunkno = oh->mesg[found_null].chunkno;
oh->mesg[found_null].dirty = TRUE;
oh->mesg[found_null].raw_size = cont_size;
}
/*
* Initialize the continuation message.
*/
oh->mesg[found_null].type = H5O_CONT;
oh->mesg[found_null].dirty = TRUE;
cont = H5MM_xcalloc (1, sizeof(H5O_cont_t));
cont->addr = H5O_NO_ADDR;
cont->size = 0;
cont->chunkno = chunkno;
oh->mesg[found_null].native = cont;
FUNC_LEAVE (idx);
}
/*-------------------------------------------------------------------------
* Function: H5O_alloc
*
* Purpose: Allocate enough space in the object header for this message.
*
* Return: Success: Index of message
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static intn
H5O_alloc (hdf5_file_t *f, H5O_t *oh, const H5O_class_t *type, size_t size)
{
intn chunkno;
intn idx;
intn null_idx;
FUNC_ENTER (H5O_alloc, NULL, FAIL);
/* check args */
assert (oh);
assert (type);
H5O_ALIGN (size, oh->alignment);
/* look for a null message which is large enough */
for (idx=0; idx<oh->nmesgs; idx++) {
if (H5O_NULL_ID==oh->mesg[idx].type->id &&
oh->mesg[idx].raw_size>=size) break;
}
#ifdef LATER
/*
* Perhaps if we join adjacent null messages we could make one
* large enough... we leave this as an exercise for future
* programmers :-) This isn't a high priority because when an
* object header is read from disk the null messages are combined
* anyway.
*/
#endif
/* if we didn't find one, then allocate more header space */
if (idx>=oh->nmesgs) {
/*
* Look for a chunk which hasn't had disk space allocated yet
* since we can just increase the size of that chunk.
*/
for (chunkno=0; chunkno<oh->nchunks; chunkno++) {
if ((idx=H5O_alloc_extend_chunk (oh, chunkno, size))>=0) break;
H5ECLEAR;
}
/*
* Create a new chunk
*/
if (idx<0) {
if ((idx=H5O_alloc_new_chunk (f, oh, size))<0) {
HRETURN_ERROR (H5E_OHDR, H5E_NOSPACE, FAIL);
}
}
}
/* do we need to split the null message? */
if (oh->mesg[idx].raw_size > size) {
assert (oh->mesg[idx].raw_size - size >= 4); /*room for type & size */
if (oh->nmesgs >= oh->alloc_nmesgs) {
oh->alloc_nmesgs += H5O_NMESGS;
oh->mesg = H5MM_xrealloc (oh->mesg,
oh->alloc_nmesgs * sizeof(H5O_mesg_t));
}
null_idx = oh->nmesgs++;
oh->mesg[null_idx].type = H5O_NULL;
oh->mesg[null_idx].dirty = TRUE;
oh->mesg[null_idx].native = NULL;
oh->mesg[null_idx].raw = oh->mesg[idx].raw + size + 4;
oh->mesg[null_idx].raw_size = oh->mesg[idx].raw_size - (size + 4);
oh->mesg[null_idx].chunkno = oh->mesg[idx].chunkno;
oh->mesg[idx].raw_size = size;
}
/* initialize the new message */
oh->mesg[idx].type = type;
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->dirty = TRUE;
FUNC_LEAVE (idx);
}
/*-------------------------------------------------------------------------
* Function: H5O_debug
*
* Purpose: Prints debugging info about an object header.
*
* Return: Success: SUCCEED
*
* Failure: FAIL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_debug (hdf5_file_t *f, haddr_t addr, FILE *stream,
intn indent, intn fwidth)
{
H5O_t *oh = NULL;
intn i, chunkno;
size_t mesg_total=0, chunk_total=0;
int *sequence;
FUNC_ENTER (H5O_debug, NULL, FAIL);
/* check args */
assert (f);
assert (addr>=0);
assert (stream);
assert (indent>=0);
assert (fwidth>=0);
if (NULL==(oh=H5AC_find (f, H5AC_OHDR, addr, NULL))) {
HRETURN_ERROR (H5E_OHDR, H5E_CANTLOAD, FAIL);
}
/* debug */
fprintf (stream, "%*sObject Header...\n", indent, "");
fprintf (stream, "%*s%-*s %d\n", indent, "", fwidth,
"Dirty:",
(int)(oh->dirty));
fprintf (stream, "%*s%-*s %d\n", indent, "", fwidth,
"Version:",
(int)(oh->version));
fprintf (stream, "%*s%-*s %d\n", indent, "", fwidth,
"Alignment:",
(int)(oh->alignment));
fprintf (stream, "%*s%-*s %d\n", indent, "", fwidth,
"Number of links:",
(int)(oh->nlink));
fprintf (stream, "%*s%-*s %d (%d)\n", indent, "", fwidth,
"Number of messages (allocated):",
(int)(oh->nmesgs), (int)(oh->alloc_nmesgs));
fprintf (stream, "%*s%-*s %d (%d)\n", indent, "", fwidth,
"Number of chunks (allocated):",
(int)(oh->nchunks), (int)(oh->alloc_nchunks));
/* debug each chunk */
for (i=chunk_total=0; i<oh->nchunks; i++) {
chunk_total += oh->chunk[i].size;
fprintf (stream, "%*sChunk %d...\n", indent, "", i);
fprintf (stream, "%*s%-*s %d\n", indent+3, "", MAX(0,fwidth-3),
"Dirty:",
(int)(oh->chunk[i].dirty));
fprintf (stream, "%*s%-*s %lu\n", indent+3, "", MAX(0,fwidth-3),
"Address:",
(unsigned long)(oh->chunk[i].addr));
if (0==i && oh->chunk[i].addr!=addr+H5O_SIZEOF_HDR(f)) {
fprintf (stream, "*** WRONG ADDRESS!\n");
}
fprintf (stream, "%*s%-*s %lu\n", indent+3, "", MAX(0,fwidth-3),
"Size in bytes:",
(unsigned long)(oh->chunk[i].size));
}
/* debug each message */
sequence = H5MM_xcalloc (NELMTS(message_type_g), sizeof(int));
for (i=mesg_total=0; i<oh->nmesgs; i++) {
mesg_total += 4 + oh->mesg[i].raw_size;
fprintf (stream, "%*sMessage %d...\n", indent, "", i);
/* check for bad message id */
if (oh->mesg[i].type->id<0 ||
oh->mesg[i].type->id>=NELMTS(message_type_g)) {
fprintf (stream, "*** BAD MESSAGE ID 0x%04x\n",
oh->mesg[i].type->id);
continue;
}
/* message name and size */
fprintf (stream, "%*s%-*s 0x%04x %s(%d)\n",
indent+3, "", MAX (0, fwidth-3),
"Message ID:",
(unsigned)(oh->mesg[i].type->id),
oh->mesg[i].type->name,
sequence[oh->mesg[i].type->id]++);
fprintf (stream, "%*s%-*s %lu\n", indent+3, "", MAX (0, fwidth-3),
"Raw size in bytes:",
(unsigned long)(oh->mesg[i].raw_size));
fprintf (stream, "%*s%-*s %d\n", indent+3, "", MAX(0,fwidth-3),
"Chunk number:",
(int)(oh->mesg[i].chunkno));
chunkno = oh->mesg[i].chunkno;
if (chunkno<0 || chunkno>=oh->nchunks) {
fprintf (stream, "*** BAD CHUNK NUMBER\n");
}
/* check the size */
if ((oh->mesg[i].raw + oh->mesg[i].raw_size >
oh->chunk[chunkno].image + oh->chunk[chunkno].size) ||
(oh->mesg[i].raw < oh->chunk[chunkno].image)) {
fprintf (stream, "*** BAD MESSAGE RAW ADDRESS\n");
}
/* decode the message */
if (NULL==oh->mesg[i].native && oh->mesg[i].type->decode) {
oh->mesg[i].native = (oh->mesg[i].type->decode)(f,
oh->mesg[i].raw_size,
oh->mesg[i].raw);
}
/* print the message */
if (oh->mesg[i].type->debug) {
(oh->mesg[i].type->debug)(f, oh->mesg[i].native, stream, indent+3,
MAX(0, fwidth-3));
} else {
fprintf (stream, "%*sNo info for this message.\n", indent+3, "");
}
}
sequence = H5MM_xfree (sequence);
if (mesg_total != chunk_total) {
fprintf (stream, "*** TOTAL SIZE DOES NOT MATCH ALLOCATED SIZE!\n");
}
FUNC_LEAVE (SUCCEED);
}
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