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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5O.c
* Aug 5 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Object header routines.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Aprivate.h" /* Attributes */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5FLprivate.h" /* Free lists */
#include "H5Iprivate.h" /* IDs */
#include "H5MFprivate.h" /* File memory management */
#include "H5Opkg.h" /* Object headers */
#include "H5SMprivate.h" /* Shared object header messages */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static hid_t H5O_open_by_loc(H5G_loc_t *obj_loc, hid_t dxpl_id);
static herr_t H5O_new(H5F_t *f, hid_t dxpl_id, haddr_t header, size_t chunk_size,
hid_t ocpl_id, H5O_loc_t *loc/*out*/);
static herr_t H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh);
static const H5O_obj_class_t *H5O_obj_class(H5O_loc_t *loc, hid_t dxpl_id);
static herr_t H5O_obj_type_real(H5O_t *oh, H5O_type_t *obj_type);
/*********************/
/* Package Variables */
/*********************/
/* Header message ID to class mapping */
const H5O_msg_class_t *const H5O_msg_class_g[] = {
H5O_MSG_NULL, /*0x0000 Null */
H5O_MSG_SDSPACE, /*0x0001 Simple Dimensionality */
H5O_MSG_LINFO, /*0x0002 Link information */
H5O_MSG_DTYPE, /*0x0003 Data Type */
H5O_MSG_FILL, /*0x0004 Old data storage -- fill value */
H5O_MSG_FILL_NEW, /*0x0005 New Data storage -- fill value */
H5O_MSG_LINK, /*0x0006 Link */
H5O_MSG_EFL, /*0x0007 Data storage -- external data files */
H5O_MSG_LAYOUT, /*0x0008 Data Layout */
#ifdef H5O_ENABLE_BOGUS
H5O_MSG_BOGUS, /*0x0009 "Bogus" */
#else /* H5O_ENABLE_BOGUS */
NULL, /*0x0009 "Bogus" */
#endif /* H5O_ENABLE_BOGUS */
H5O_MSG_GINFO, /*0x000A Group Information */
H5O_MSG_PLINE, /*0x000B Data storage -- filter pipeline */
H5O_MSG_ATTR, /*0x000C Attribute list */
H5O_MSG_NAME, /*0x000D Object name */
H5O_MSG_MTIME, /*0x000E Object modification date and time */
H5O_MSG_SHARED, /*0x000F Shared header message */
H5O_MSG_CONT, /*0x0010 Object header continuation */
H5O_MSG_STAB, /*0x0011 Symbol table */
H5O_MSG_MTIME_NEW, /*0x0012 New Object modification date and time */
};
/* Header object ID to class mapping */
/*
* Initialize the object class info table. Begin with the most general types
* and end with the most specific. For instance, any object that has a
* datatype message is a datatype but only some of them are datasets.
*/
const H5O_obj_class_t *const H5O_obj_class_g[] = {
H5O_OBJ_DATATYPE, /* Datatype object (H5G_TYPE - 2) */
H5O_OBJ_DATASET, /* Dataset object (H5G_DATASET - 1) */
H5O_OBJ_GROUP, /* Group object (H5G_GROUP - 0) */
};
/* Declare a free list to manage the H5O_t struct */
H5FL_DEFINE(H5O_t);
/* Declare a free list to manage the H5O_mesg_t sequence information */
H5FL_SEQ_DEFINE(H5O_mesg_t);
/* Declare a free list to manage the H5O_chunk_t sequence information */
H5FL_SEQ_DEFINE(H5O_chunk_t);
/* Declare a free list to manage the chunk image information */
H5FL_BLK_DEFINE(chunk_image);
/*****************************/
/* Library Private Variables */
/*****************************/
/* Declare external the free list for time_t's */
H5FL_EXTERN(time_t);
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5Oopen
*
* Purpose: Opens an object within an HDF5 file.
*
* This function opens an object in the same way that H5Gopen,
* H5Topen, and H5Dopen do. However, H5Oopen doesn't require
* the type of object to be known beforehand. This can be
* useful in user-defined links, for instance, when only a
* path is known.
*
* The opened object should be closed again with H5Oclose
* or H5Gclose, H5Tclose, or H5Dclose.
*
* Return: Success: An open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
hid_t
H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Entry at 'name' found */
hid_t ret_value = FAIL;
FUNC_ENTER_API(H5Oopen, FAIL)
H5TRACE3("i","isi",loc_id,name,lapl_id);
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
/* Find the object's location */
if(H5G_loc_find(&loc, name, &obj_loc/*out*/, lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found")
loc_found = TRUE;
/* Open the object */
if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
if(ret_value < 0 && loc_found)
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_API(ret_value)
} /* end H5Oopen() */
/*-------------------------------------------------------------------------
* Function: H5Oopen_by_idx
*
* Purpose: Opens an object within an HDF5 file, according to the offset
* within an index.
*
* This function opens an object in the same way that H5Gopen,
* H5Topen, and H5Dopen do. However, H5Oopen doesn't require
* the type of object to be known beforehand. This can be
* useful in user-defined links, for instance, when only a
* path is known.
*
* The opened object should be closed again with H5Oclose
* or H5Gclose, H5Tclose, or H5Dclose.
*
* Return: Success: An open object identifier
* Failure: Negative
*
* Programmer: Quincey Koziol
* November 20 2006
*
*-------------------------------------------------------------------------
*/
hid_t
H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5L_index_t idx_type,
H5_iter_order_t order, hsize_t n, hid_t lapl_id)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Entry at 'name' found */
hid_t ret_value = FAIL;
FUNC_ENTER_API(H5Oopen_by_idx, FAIL)
H5TRACE6("i","isLiIohi",loc_id,group_name,idx_type,order,n,lapl_id);
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!group_name || !*group_name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified")
if(idx_type <= H5L_INDEX_UNKNOWN || idx_type >= H5L_INDEX_N)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified")
if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified")
if(H5P_DEFAULT == lapl_id)
lapl_id = H5P_LINK_ACCESS_DEFAULT;
else
if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
/* Find the object's location, according to the order in the index */
if(H5G_loc_find_by_idx(&loc, group_name, idx_type, order, n, &obj_loc/*out*/, lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
loc_found = TRUE;
/* Open the object */
if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
/* Release the object location if we failed after copying it */
if(ret_value < 0 && loc_found)
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_API(ret_value)
} /* end H5Oopen_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5Oopen_by_addr
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function opens an object using its address within the
* HDF5 file, similar to an HDF5 hard link. The open object
* is identical to an object opened with H5Oopen() and should
* be closed with H5Oclose() or a type-specific closing
* function (such as H5Gclose() ).
*
* This function is very dangerous if called on an invalid
* address. For this reason, H5Oincr_refcount() should be
* used to prevent HDF5 from deleting any object that is
* referenced by address (e.g. by a user-defined link).
* H5Odecr_refcount() should be used when the object is
* no longer being referenced by address (e.g. when the UD link
* is deleted).
*
* The address of the HDF5 file on disk has no effect on
* H5Oopen_by_addr(), nor does the use of any unusual file
* drivers. The "address" is really the offset within the
* HDF5 file, and HDF5's file drivers will transparently
* map this to an address on disk for the filesystem.
*
* Return: Success: An open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
hid_t
H5Oopen_by_addr(hid_t loc_id, haddr_t addr)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Location at 'name' found */
hid_t ret_value = FAIL;
FUNC_ENTER_API(H5Oopen_by_addr, FAIL)
H5TRACE2("i","ia",loc_id,addr);
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!H5F_addr_defined(addr))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no address supplied")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
obj_loc.oloc->addr = addr;
obj_loc.oloc->file = loc.oloc->file;
H5G_name_reset(obj_loc.path); /* objects opened through this routine don't have a path name */
/* Open the object */
if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
if(ret_value < 0 && loc_found)
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_API(ret_value)
} /* end H5Oopen_by_addr() */
/*-------------------------------------------------------------------------
* Function: H5Oincr_refcount
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function increments the "hard link" reference count
* for an object. It should be used when a user-defined link
* that references an object by address is created. When the
* link is deleted, H5Odecr_refcount should be used.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oincr_refcount(hid_t object_id)
{
H5O_loc_t *oloc;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Oincr_refcount, FAIL)
H5TRACE1("e","i",object_id);
/* Get the object's oloc so we can adjust its link count */
if((oloc = H5O_get_loc(object_id)) == NULL)
HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID")
if(H5O_link(oloc, 1, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5O_incr_refcount() */
/*-------------------------------------------------------------------------
* Function: H5Odecr_refcount
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function decrements the "hard link" reference count
* for an object. It should be used when user-defined links
* that reference an object by address are deleted, and only
* after H5Oincr_refcount has already been used.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Odecr_refcount(hid_t object_id)
{
H5O_loc_t *oloc;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Odecr_refcount, FAIL)
H5TRACE1("e","i",object_id);
/* Get the object's oloc so we can adjust its link count */
if((oloc = H5O_get_loc(object_id)) == NULL)
HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID")
if(H5O_link(oloc, -1, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Odecr_refcount() */
/*-------------------------------------------------------------------------
* Function: H5Oget_info
*
* Purpose: Retrieve information about an object.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* November 21 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oget_info(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id)
{
H5G_loc_t loc; /* Location of group */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(H5Oget_info, FAIL)
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
if(!oinfo)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
if(H5P_DEFAULT == lapl_id)
lapl_id = H5P_LINK_ACCESS_DEFAULT;
else
if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID")
/* Retrieve the object's information */
if(H5G_loc_info(&loc, name, oinfo/*out*/, lapl_id, H5AC_ind_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Oget_info() */
/*-------------------------------------------------------------------------
* Function: H5Oget_info_by_idx
*
* Purpose: Retrieve information about an object, according to the order
* of an index.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* November 26 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5L_index_t idx_type,
H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id)
{
H5G_loc_t loc; /* Location of group */
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Entry at 'name' found */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_API(H5Oget_info_by_idx, FAIL)
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!group_name || !*group_name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name specified")
if(idx_type <= H5L_INDEX_UNKNOWN || idx_type >= H5L_INDEX_N)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid index type specified")
if(order <= H5_ITER_UNKNOWN || order >= H5_ITER_N)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "invalid iteration order specified")
if(!oinfo)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no info struct")
if(H5P_DEFAULT == lapl_id)
lapl_id = H5P_LINK_ACCESS_DEFAULT;
else
if(TRUE != H5P_isa_class(lapl_id, H5P_LINK_ACCESS))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not link access property list ID")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
/* Find the object's location, according to the order in the index */
if(H5G_loc_find_by_idx(&loc, group_name, idx_type, order, n, &obj_loc/*out*/, lapl_id, H5AC_ind_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
loc_found = TRUE;
/* Retrieve the object's information */
if(H5O_get_info(obj_loc.oloc, oinfo, H5AC_ind_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve object info")
done:
/* Release the object location */
if(loc_found && H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_API(ret_value)
} /* end H5Oget_info_by_idx() */
/*-------------------------------------------------------------------------
* Function: H5Oclose
*
* Purpose: Close an open file object.
*
* This is the companion to H5Oopen. It is used to close any
* open object in an HDF5 file (but not IDs are that not file
* objects, such as property lists and dataspaces). It has
* the same effect as calling H5Gclose, H5Dclose, or H5Tclose.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oclose(hid_t object_id)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Oclose, FAIL)
H5TRACE1("e","i",object_id);
/* Get the type of the object and close it in the correct way */
switch(H5I_get_type(object_id))
{
case(H5I_GROUP):
case(H5I_DATATYPE):
case(H5I_DATASET):
if(H5I_object(object_id) == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object")
if(H5I_dec_ref(object_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "unable to close object")
break;
default:
HGOTO_ERROR(H5E_ARGS, H5E_CANTRELEASE, FAIL, "not a valid file object ID (dataset, group, or datatype)")
break;
} /* end switch */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Oclose() */
/*-------------------------------------------------------------------------
* Function: H5O_create
*
* Purpose: Creates a new object header. Allocates space for it and
* then calls an initialization function. The object header
* is opened for write access and should eventually be
* closed by calling H5O_close().
*
* Return: Success: Non-negative, the ENT argument contains
* information about the object header,
* including its address.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, hid_t ocpl_id,
H5O_loc_t *loc/*out*/)
{
haddr_t header; /* Address of object header */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI(H5O_create, FAIL)
/* check args */
HDassert(f);
HDassert(loc);
/* Make certain we allocate at least a reasonable size for the object header */
size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint));
/* allocate disk space for header and first chunk */
if(HADDR_UNDEF == (header = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id,
(hsize_t)H5O_SIZEOF_HDR_F(f) + size_hint)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for object header header")
/* initialize the object header */
if(H5O_new(f, dxpl_id, header, size_hint, ocpl_id, loc) != SUCCEED)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to initialize object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_create() */
/*-------------------------------------------------------------------------
* Function: H5O_new
*
* Purpose: Initialize a new object header, sets the link count to 0,
* and caches the header. The object header is opened for
* write access and should eventually be closed by calling
* H5O_close().
*
* Return: Success: SUCCEED, the LOC argument contains
* information about the object header,
* including its address.
* Failure: FAIL
*
* Programmer: Bill Wendling
* 1, November 2002
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_new(H5F_t *f, hid_t dxpl_id, haddr_t header, size_t chunk_size,
hid_t ocpl_id, H5O_loc_t *loc/*out*/)
{
H5O_t *oh = NULL;
size_t oh_size; /* Size of initial object header */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_new)
/* check args */
HDassert(f);
HDassert(loc);
HDassert(TRUE == H5P_isa_class(ocpl_id, H5P_OBJECT_CREATE));
/* Set up object location */
loc->file = f;
loc->addr = header;
/* Allocate the object header and fill in header fields */
if(NULL == (oh = H5FL_MALLOC(H5O_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize rudimentary information object object header */
oh->version = H5F_USE_LATEST_FORMAT(f) ? H5O_VERSION_LATEST : H5O_VERSION_1;
oh->nlink = 0;
oh->skipped_mesg_size = 0;
oh->sizeof_size = H5F_SIZEOF_SIZE(f);
oh->sizeof_addr = H5F_SIZEOF_ADDR(f);
/* Initialize version-specific fields */
if(oh->version > H5O_VERSION_1) {
H5P_genplist_t *oc_plist; /* Object creation property list */
/* Initialize all time fields with current time */
oh->atime = oh->mtime = oh->ctime = oh->btime = H5_now();
/* Get the property list */
if(NULL == (oc_plist = H5I_object(ocpl_id)))
HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a property list")
/* Initialize attribute tracking fields */
/* Retrieve phase change values from property list */
if(H5P_get(oc_plist, H5O_CRT_ATTR_MAX_COMPACT_NAME, &oh->max_compact) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get max. # of compact attributes")
if(H5P_get(oc_plist, H5O_CRT_ATTR_MIN_DENSE_NAME, &oh->min_dense) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get min. # of dense attributes")
/* Set starting values for attribute info */
oh->nattrs = 0;
oh->attr_fheap_addr = HADDR_UNDEF;
oh->name_bt2_addr = HADDR_UNDEF;
} /* end if */
else {
/* Reset unused time fields */
oh->atime = oh->mtime = oh->ctime = oh->btime = 0;
/* Reset unused attribute fields */
oh->max_compact = 0;
oh->min_dense = 0;
oh->nattrs = 0;
oh->attr_fheap_addr = HADDR_UNDEF;
oh->name_bt2_addr = HADDR_UNDEF;
} /* end else */
/* Compute total size of initial object header */
/* (i.e. object header prefix and first chunk) */
oh_size = H5O_SIZEOF_HDR_OH(oh) + chunk_size;
/* Create the chunk list */
oh->nchunks = oh->alloc_nchunks = 1;
if(NULL == (oh->chunk = H5FL_SEQ_MALLOC(H5O_chunk_t, (size_t)oh->alloc_nchunks)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize the first chunk */
oh->chunk[0].dirty = TRUE;
oh->chunk[0].addr = loc->addr;
oh->chunk[0].size = oh_size;
oh->chunk[0].gap = 0;
/* Allocate enough space for the first chunk */
/* (including space for serializing the object header prefix */
if(NULL == (oh->chunk[0].image = H5FL_BLK_CALLOC(chunk_image, oh_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Put magic # for object header in first chunk */
if(oh->version > H5O_VERSION_1)
HDmemcpy(oh->chunk[0].image, H5O_HDR_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
/* Create the message list */
oh->nmesgs = 1;
oh->alloc_nmesgs = H5O_NMESGS;
if(NULL == (oh->mesg = H5FL_SEQ_CALLOC(H5O_mesg_t, oh->alloc_nmesgs)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize the first message */
oh->mesg[0].type = H5O_MSG_NULL;
oh->mesg[0].dirty = TRUE;
oh->mesg[0].native = NULL;
oh->mesg[0].raw = oh->chunk[0].image + (H5O_SIZEOF_HDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)) + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[0].raw_size = chunk_size - H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[0].chunkno = 0;
/* Cache object header */
if(H5AC_set(f, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to cache object header")
/* Open it */
if(H5O_open(loc) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object header")
done:
if(ret_value < 0 && oh) {
if(H5O_dest(f, oh) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data")
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_new() */
/*-------------------------------------------------------------------------
* Function: H5O_open
*
* Purpose: Opens an object header which is described by the symbol table
* entry OBJ_ENT.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, January 5, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_open(const H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOFUNC(H5O_open)
/* Check args */
HDassert(loc);
HDassert(loc->file);
#ifdef H5O_DEBUG
if (H5DEBUG(O))
HDfprintf(H5DEBUG(O), "> %a\n", loc->addr);
#endif
/* Increment open-lock counters */
loc->file->nopen_objs++;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_open() */
/*-------------------------------------------------------------------------
* Function: H5O_open_by_loc
*
* Purpose: Opens an object and returns an ID given its group loction.
*
* Return: Success: Open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 25 2006
*
*-------------------------------------------------------------------------
*/
static hid_t
H5O_open_by_loc(H5G_loc_t *obj_loc, hid_t dxpl_id)
{
const H5O_obj_class_t *obj_class; /* Class of object for location */
hid_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_open_by_loc)
HDassert(obj_loc);
/* Get the object class for this location */
if(NULL == (obj_class = H5O_obj_class(obj_loc->oloc, dxpl_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class")
/* Call the object class's 'open' routine */
HDassert(obj_class->open);
if((ret_value = obj_class->open(obj_loc, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_open_by_loc() */
/*-------------------------------------------------------------------------
* Function: H5O_close
*
* Purpose: Closes an object header that was previously open.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, January 5, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_close(H5O_loc_t *loc)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_close, FAIL)
/* Check args */
HDassert(loc);
HDassert(loc->file);
HDassert(loc->file->nopen_objs > 0);
/* Decrement open-lock counters */
--loc->file->nopen_objs;
#ifdef H5O_DEBUG
if(H5DEBUG(O)) {
if(loc->file->file_id < 0 && 1 == loc->file->shared->nrefs)
HDfprintf(H5DEBUG(O), "< %a auto %lu remaining\n",
loc->addr,
(unsigned long)(loc->file->nopen_objs));
else
HDfprintf(H5DEBUG(O), "< %a\n", loc->addr);
} /* end if */
#endif
/*
* If the file open object count has reached the number of open mount points
* (each of which has a group open in the file) attempt to close the file.
*/
if(loc->file->nopen_objs == loc->file->mtab.nmounts)
/* Attempt to close down the file hierarchy */
if(H5F_try_close(loc->file) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCLOSEFILE, FAIL, "problem attempting file close")
/* Release location information */
if(H5O_loc_free(loc) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "problem attempting to free location")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_close() */
/*-------------------------------------------------------------------------
* Function: H5O_link
*
* Purpose: Adjust the link count for an object header by adding
* ADJUST to the link count.
*
* Return: Success: New link count
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
*-------------------------------------------------------------------------
*/
int
H5O_link(const H5O_loc_t *loc, int adjust, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET; /* used to indicate whether the
* object was deleted as a result
* of this action.
*/
int ret_value = FAIL;
FUNC_ENTER_NOAPI(H5O_link, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
if(adjust != 0 && 0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* get header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr,
NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* adjust link count */
if(adjust < 0) {
/* Check for too large of an adjustment */
if((unsigned)(-adjust) > oh->nlink)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "link count would be negative")
oh->nlink += adjust;
oh_flags |= H5AC__DIRTIED_FLAG;
/* Check if the object should be deleted */
if(oh->nlink == 0) {
/* Check if the object is still open by the user */
if(H5FO_opened(loc->file, loc->addr) != NULL) {
/* Flag the object to be deleted when it's closed */
if(H5FO_mark(loc->file, loc->addr, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion")
} /* end if */
else {
/* Delete object right now */
if(H5O_delete_oh(loc->file, dxpl_id, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file")
/* Mark the object header as deleted */
oh_flags = H5C__DELETED_FLAG;
} /* end else */
} /* end if */
} else if (adjust > 0) {
/* A new object, or one that will be deleted */
if(oh->nlink == 0) {
/* Check if the object is current open, but marked for deletion */
if(H5FO_marked(loc->file, loc->addr) > 0) {
/* Remove "delete me" flag on the object */
if(H5FO_mark(loc->file, loc->addr, FALSE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion")
} /* end if */
} /* end if */
oh->nlink += adjust;
oh_flags |= H5AC__DIRTIED_FLAG;
} /* end if */
/* Set return value */
ret_value = oh->nlink;
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_link() */
/*-------------------------------------------------------------------------
* Function: H5O_protect
*
* Purpose: Wrapper around H5AC_protect for use during a H5O_protect->
* H5O_msg_append->...->H5O_msg_append->H5O_unprotect sequence of calls
* during an object's creation.
*
* Return: Success: Pointer to the object header structure for the
* object.
*
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
H5O_t *
H5O_protect(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_protect, NULL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
/* Check for write access on the file */
if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, NULL, "no write intent on file")
/* Lock the object header into the cache */
if(NULL == (ret_value = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_protect() */
/*-------------------------------------------------------------------------
* Function: H5O_unprotect
*
* Purpose: Wrapper around H5AC_unprotect for use during a H5O_protect->
* H5O_msg_append->...->H5O_msg_append->H5O_unprotect sequence of calls
* during an object's creation.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_unprotect(H5O_loc_t *loc, H5O_t *oh, hid_t dxpl_id, unsigned oh_flags)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_unprotect, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(oh);
/* Release the object header from the cache */
if(H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_unprotect() */
/*-------------------------------------------------------------------------
* Function: H5O_touch_oh
*
* Purpose: If FORCE is non-zero then create a modification time message
* unless one already exists. Then update any existing
* modification time message with the current time.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, July 27, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_touch_oh(H5F_t *f,
hid_t dxpl_id,
H5O_t *oh,
hbool_t force,
unsigned * oh_flags_ptr)
{
time_t now; /* Current time */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_touch_oh)
HDassert(oh);
HDassert(oh_flags_ptr);
/* Get current time */
now = H5_now();
/* Check version, to determine how to store time information */
if(oh->version == H5O_VERSION_1) {
unsigned idx; /* Index of modification time message to update */
/* Look for existing message */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_MSG_MTIME == oh->mesg[idx].type || H5O_MSG_MTIME_NEW == oh->mesg[idx].type)
break;
/* Create a new message, if necessary */
if(idx == oh->nmesgs) {
size_t size; /* New modification time message size */
/* If we would have to create a new message, but we aren't 'forcing' it, get out now */
if(!force)
HGOTO_DONE(SUCCEED); /*nothing to do*/
size = (H5O_MSG_MTIME_NEW->raw_size)(f, &now);
if((idx = H5O_alloc(f, dxpl_id, oh, H5O_MSG_MTIME_NEW, size, oh_flags_ptr)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for modification time message")
} /* end if */
/* Allocate 'native' space, if necessary */
if(NULL == oh->mesg[idx].native) {
if(NULL == (oh->mesg[idx].native = H5FL_MALLOC(time_t)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for modification time message")
} /* end if */
/* Update the message */
*((time_t *)(oh->mesg[idx].native)) = now;
/* Mark the message as dirty */
oh->mesg[idx].dirty = TRUE;
} /* end if */
else {
/* XXX: For now, update access time & change fields in the object header */
/* (will need to add some code to update modification time appropriately) */
oh->atime = oh->ctime = now;
} /* end else */
/* Mark the object header as dirty */
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_touch_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_touch
*
* Purpose: Touch an object by setting the modification time to the
* current time and marking the object as dirty. Unless FORCE
* is non-zero, nothing happens if there is no MTIME message in
* the object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, July 27, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_touch(H5O_loc_t *loc, hbool_t force, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_touch, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Get the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Create/Update the modification time message */
if(H5O_touch_oh(loc->file, dxpl_id, oh, force, &oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object modificaton time")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_touch() */
#ifdef H5O_ENABLE_BOGUS
/*-------------------------------------------------------------------------
* Function: H5O_bogus_oh
*
* Purpose: Create a "bogus" message unless one already exists.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* <koziol@ncsa.uiuc.edu>
* Tuesday, January 21, 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_bogus_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh, hbool_t * oh_flags_ptr)
{
int idx;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER(H5O_bogus_oh, FAIL)
HDassert(f);
HDassert(oh);
HDassert(oh_flags_ptr);
/* Look for existing message */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_MSG_BOGUS == oh->mesg[idx].type)
break;
/* Create a new message */
if(idx == oh->nmesgs) {
size_t size = (H5O_MSG_BOGUS->raw_size)(f, NULL);
if((idx = H5O_alloc(f, dxpl_id, oh, H5O_MSG_BOGUS, size, oh_flags_ptr)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for 'bogus' message")
/* Allocate the native message in memory */
if(NULL == (oh->mesg[idx].native = H5MM_malloc(sizeof(H5O_bogus_t))))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for 'bogus' message")
/* Update the native part */
((H5O_bogus_t *)(oh->mesg[idx].native))->u = H5O_BOGUS_VALUE;
/* Mark the message and object header as dirty */
*oh_flags_ptr = TRUE;
oh->mesg[idx].dirty = TRUE;
oh->dirty = TRUE;
} /* end if */
done:
FUNC_LEAVE(ret_value)
} /* end H5O_bogus_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_bogus
*
* Purpose: Create a "bogus" message in an object.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* <koziol@ncsa.uiuc.edu>
* Tuesday, January 21, 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_bogus(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET;
herr_t ret_value = SUCCEED;
FUNC_ENTER(H5O_bogus, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
/* Verify write access to the file */
if(0 == (H5F_INTENT(loc->file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Get the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Create the "bogus" message */
if(H5O_bogus_oh(ent->file, dxpl_id, oh, &oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object 'bogus' message")
done:
if(oh && H5AC_unprotect(ent->file, dxpl_id, H5AC_OHDR, ent->header, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE(ret_value)
} /* end H5O_bogus() */
#endif /* H5O_ENABLE_BOGUS */
/*-------------------------------------------------------------------------
* Function: H5O_delete
*
* Purpose: Delete an object header from a file. This frees the file
* space used for the object header (and it's continuation blocks)
* and also walks through each header message and asks it to
* remove all the pieces of the file referenced by the header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 19 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_delete(H5F_t *f, hid_t dxpl_id, haddr_t addr)
{
H5O_t *oh = NULL; /* Object header information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_delete,FAIL)
/* Check args */
HDassert(f);
HDassert(H5F_addr_defined(addr));
/* Get the object header information */
if(NULL == (oh = H5AC_protect(f, dxpl_id, H5AC_OHDR, addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Delete object */
if(H5O_delete_oh(f, dxpl_id, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file")
done:
if(oh && H5AC_unprotect(f, dxpl_id, H5AC_OHDR, addr, oh, H5AC__DIRTIED_FLAG | H5C__DELETED_FLAG) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_delete() */
/*-------------------------------------------------------------------------
* Function: H5O_delete_oh
*
* Purpose: Internal function to:
* Delete an object header from a file. This frees the file
* space used for the object header (and it's continuation blocks)
* and also walks through each header message and asks it to
* remove all the pieces of the file referenced by the header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 19 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
{
H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */
unsigned u;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_delete_oh)
/* Check args */
HDassert(f);
HDassert(oh);
/* Walk through the list of object header messages, asking each one to
* delete any file space used
*/
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
/* Free any space referred to in the file from this message */
if(H5O_delete_mesg(f, dxpl_id, curr_msg, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
} /* end for */
/* Check for dense attribute storage & delete it if necessary */
if(oh->version > H5O_VERSION_1 && H5F_addr_defined(oh->attr_fheap_addr)) {
if(H5A_dense_delete(f, dxpl_id, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
} /* end if */
/* Free main (first) object header "chunk" */
if(H5MF_xfree(f, H5FD_MEM_OHDR, dxpl_id, oh->chunk[0].addr, (hsize_t)oh->chunk[0].size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_delete_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_type
*
* Purpose: Retrieves the type of object pointed to by `loc'.
*
* Return: Success: An object type defined in H5Gpublic.h
* Failure: H5G_UNKNOWN
*
* Programmer: Robb Matzke
* Wednesday, November 4, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_obj_type(const H5O_loc_t *loc, H5O_type_t *obj_type, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header for location */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_obj_type, FAIL)
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Retrieve the type of the object */
if(H5O_obj_type_real(oh, obj_type) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_type() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_type_real
*
* Purpose: Returns the type of object pointed to by `oh'.
*
* Return: Success: An object type defined in H5Opublic.h
* Failure: H5G_UNKNOWN
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_obj_type_real(H5O_t *oh, H5O_type_t *obj_type)
{
const H5O_obj_class_t *obj_class; /* Class of object for header */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_obj_type_real)
/* Sanity check */
HDassert(oh);
HDassert(obj_type);
/* Look up class for object header */
if(NULL == (obj_class = H5O_obj_class_real(oh)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object type")
/* Set object type */
*obj_type = obj_class->type;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_type_real() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_class
*
* Purpose: Returns the class of object pointed to by `loc'.
*
* Return: Success: An object class
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 6, 2006
*
*-------------------------------------------------------------------------
*/
static const H5O_obj_class_t *
H5O_obj_class(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header for location */
const H5O_obj_class_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_obj_class)
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header")
/* Test whether entry qualifies as a particular type of object */
if(NULL == (ret_value = H5O_obj_class_real(oh)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_class() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_class_real
*
* Purpose: Returns the class of object pointed to by `oh'.
*
* Return: Success: An object class
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
const H5O_obj_class_t *
H5O_obj_class_real(H5O_t *oh)
{
size_t i; /* Local index variable */
const H5O_obj_class_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_obj_class_real, NULL)
/* Sanity check */
HDassert(oh);
/* Test whether entry qualifies as a particular type of object */
/* (Note: loop is in reverse order, to test specific objects first) */
for(i = NELMTS(H5O_obj_class_g); i > 0; --i) {
htri_t isa; /* Is entry a particular type? */
if((isa = (H5O_obj_class_g[i - 1]->isa)(oh)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
else if(isa)
HGOTO_DONE(H5O_obj_class_g[i - 1])
} /* end for */
if(0 == i)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_class_real() */
/*-------------------------------------------------------------------------
* Function: H5O_get_loc
*
* Purpose: Gets the object location for an object given its ID.
*
* Return: Success: Pointer to H5O_loc_t
* Failure: NULL
*
* Programmer: James Laird
* July 25 2006
*
*-------------------------------------------------------------------------
*/
H5O_loc_t *
H5O_get_loc(hid_t object_id)
{
H5O_loc_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_get_loc)
switch(H5I_get_type(object_id))
{
case(H5I_GROUP):
if(NULL == (ret_value = H5O_OBJ_GROUP->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from group ID")
break;
case(H5I_DATASET):
if(NULL == (ret_value = H5O_OBJ_DATASET->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from dataset ID")
break;
case(H5I_DATATYPE):
if(NULL == (ret_value = H5O_OBJ_DATATYPE->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from datatype ID")
break;
default:
HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, NULL, "invalid object type")
} /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_loc() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_reset
*
* Purpose: Reset a object location to an empty state
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, September 19, 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_reset(H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_reset)
/* Check arguments */
HDassert(loc);
/* Clear the object location to an empty state */
HDmemset(loc, 0, sizeof(H5O_loc_t));
loc->addr = HADDR_UNDEF;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_reset() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_copy
*
* Purpose: Copy object location information
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Monday, September 19, 2005
*
* Notes: 'depth' parameter determines how much of the group entry
* structure we want to copy. The values are:
* H5_COPY_SHALLOW - Copy all the field values from the source
* to the destination, but not copying objects pointed to.
* (Destination "takes ownership" of objects pointed to)
* H5_COPY_DEEP - Copy all the fields from the source to
* the destination, deep copying objects pointed to.
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_copy(H5O_loc_t *dst, const H5O_loc_t *src, H5_copy_depth_t depth)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_copy)
/* Check arguments */
HDassert(src);
HDassert(dst);
HDassert(depth == H5_COPY_SHALLOW || depth == H5_COPY_DEEP);
/* Copy the top level information */
HDmemcpy(dst, src, sizeof(H5O_loc_t));
/* Deep copy the names */
if(depth == H5_COPY_DEEP) {
/* If the original entry was holding open the file, this one should
* hold it open, too.
*/
if(src->holding_file)
dst->file->nopen_objs++;
} else if(depth == H5_COPY_SHALLOW) {
/* Discarding 'const' qualifier OK - QAK */
H5O_loc_reset((H5O_loc_t *)src);
} /* end if */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_copy() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_hold_file
*
* Purpose: Have this object header hold a file open until it is
* released.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* Wednesday, August 16, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_hold_file(H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_hold_file)
/* Check arguments */
HDassert(loc);
HDassert(loc->file);
/* If this location is not already holding its file open, do so. */
if(!loc->holding_file)
{
loc->file->nopen_objs++;
loc->holding_file = TRUE;
}
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_hold_file() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_free
*
* Purpose: Release resources used by this object header location.
* Not to be confused with H5O_close; this is used on
* locations that don't correspond to open objects.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* Wednesday, August 16, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_free(H5O_loc_t *loc)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5O_loc_free)
/* Check arguments */
HDassert(loc);
/* If this location is holding its file open try to close the file. */
if(loc->holding_file) {
loc->file->nopen_objs--;
loc->holding_file = FALSE;
if(loc->file->nopen_objs <= 0) {
if(H5F_try_close(loc->file) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file")
} /* end if */
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_loc_free() */
/*-------------------------------------------------------------------------
* Function: H5O_get_info
*
* Purpose: Retrieve the information for an object
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* November 21 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_get_info(H5O_loc_t *oloc, H5O_info_t *oinfo, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header */
H5O_chunk_t *curr_chunk; /* Pointer to current message being operated on */
H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_get_info, FAIL)
/* Check args */
HDassert(oloc);
HDassert(oinfo);
/* Get the object header */
if(NULL == (oh = H5AC_protect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Retrieve the file's fileno */
if(H5F_get_fileno(oloc->file, &oinfo->fileno) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADVALUE, FAIL, "unable to read fileno")
/* Set the object's address */
oinfo->addr = oloc->addr;
/* Retrieve the type of the object */
if(H5O_obj_type_real(oh, &oinfo->type) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type")
/* Set the object's reference count */
oinfo->rc = oh->nlink;
/* Get modification time for object */
if(oh->version > H5O_VERSION_1) {
oinfo->atime = oh->atime;
oinfo->mtime = oh->mtime;
oinfo->ctime = oh->ctime;
oinfo->btime = oh->btime;
} /* end if */
else {
/* No information for access & modification fields */
/* (we stopped updating the "modification time" header message for
* raw data changes, so the "modification time" header message
* is closest to the 'change time', in POSIX terms - QAK)
*/
oinfo->atime = 0;
oinfo->mtime = 0;
oinfo->btime = 0;
/* Might be information for modification time */
if(NULL == H5O_msg_read_real(oloc->file, oh, H5O_MTIME_ID, 0, &oinfo->ctime, dxpl_id)) {
H5E_clear_stack(NULL);
if(NULL == H5O_msg_read_real(oloc->file, oh, H5O_MTIME_NEW_ID, 0, &oinfo->ctime, dxpl_id)) {
H5E_clear_stack(NULL);
oinfo->ctime = 0;
} /* end if */
} /* end if */
} /* end else */
/* Set the version for the object header */
oinfo->hdr.version = oh->version;
/* Set the number of messages & chunks */
oinfo->hdr.nmesgs = oh->nmesgs;
oinfo->hdr.nchunks = oh->nchunks;
/* Iterate over all the messages, accumulating message size & type information */
oinfo->num_attrs = 0;
oinfo->hdr.meta_space = H5O_SIZEOF_HDR_OH(oh) + (H5O_SIZEOF_CHKHDR_OH(oh) * (oh->nchunks - 1));
oinfo->hdr.mesg_space = 0;
oinfo->hdr.free_space = 0;
oinfo->hdr.msg_present = 0;
oinfo->hdr.msg_shared = 0;
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
uint64_t type_flag; /* Flag for message type */
/* Check for attribute message */
if(H5O_ATTR_ID == curr_msg->type->id)
oinfo->num_attrs++;
/* Accumulate information, based on the type of message */
if(H5O_NULL_ID == curr_msg->type->id)
oinfo->hdr.free_space += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size;
else if(H5O_CONT_ID == curr_msg->type->id)
oinfo->hdr.meta_space += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size;
else {
oinfo->hdr.meta_space += H5O_SIZEOF_MSGHDR_OH(oh);
oinfo->hdr.mesg_space += curr_msg->raw_size;
} /* end else */
/* Set flag to indicate present of message type */
type_flag = ((uint64_t)1) << curr_msg->type->id;
oinfo->hdr.msg_present |= type_flag;
/* Set flag if the message is shared in some way */
if(curr_msg->flags & H5O_MSG_FLAG_SHARED) \
oinfo->hdr.msg_shared |= type_flag;
} /* end for */
/* Sanity checking, etc. for # of attributes */
if(oh->version > H5O_VERSION_1) {
if(H5F_addr_defined(oh->attr_fheap_addr)) {
HDassert(oinfo->num_attrs == 0);
oinfo->num_attrs = oh->nattrs;
} /* end if */
else
HDassert(oh->nattrs == oinfo->num_attrs);
} /* end if */
/* Iterate over all the chunks, adding any gaps to the free space */
oinfo->hdr.hdr_size = 0;
for(u = 0, curr_chunk = &oh->chunk[0]; u < oh->nchunks; u++, curr_chunk++) {
/* Accumulate the size of the header on header */
oinfo->hdr.hdr_size += curr_chunk->size;
/* If the chunk has a gap, add it to the free space */
oinfo->hdr.free_space += curr_chunk->gap;
} /* end for */
/* Sanity check that all the bytes are accounted for */
HDassert(oinfo->hdr.hdr_size == (oinfo->hdr.free_space + oinfo->hdr.meta_space + oinfo->hdr.mesg_space + oh->skipped_mesg_size));
done:
if(oh && H5AC_unprotect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_info() */
/*-------------------------------------------------------------------------
* Function: H5O_get_create_plist
*
* Purpose: Retrieve the object creation properties for an object
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* November 28 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_get_create_plist(const H5O_loc_t *oloc, hid_t dxpl_id, H5P_genplist_t *oc_plist)
{
H5O_t *oh = NULL; /* Object header */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_get_create_plist, FAIL)
/* Check args */
HDassert(oloc);
HDassert(oc_plist);
/* Get the object header */
if(NULL == (oh = H5AC_protect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Set property values, if they were used for the object */
if(oh->version > H5O_VERSION_1) {
if(H5P_set(oc_plist, H5O_CRT_ATTR_MAX_COMPACT_NAME, &oh->max_compact) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set max. # of compact attributes in property list")
if(H5P_set(oc_plist, H5O_CRT_ATTR_MIN_DENSE_NAME, &oh->min_dense) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "can't set min. # of dense attributes in property list")
} /* end if */
done:
if(oh && H5AC_unprotect(oloc->file, dxpl_id, H5AC_OHDR, oloc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_create_plist() */
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