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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5O.c
* Aug 5 1997
* Robb Matzke <matzke@llnl.gov>
*
* Purpose: Object header routines.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File access */
#include "H5FLprivate.h" /* Free lists */
#include "H5Iprivate.h" /* IDs */
#include "H5Lprivate.h" /* Links */
#include "H5MFprivate.h" /* File memory management */
#include "H5MMprivate.h" /* Memory management */
#include "H5Opkg.h" /* Object headers */
#include "H5SMprivate.h" /* Shared object header messages */
#include "H5Tprivate.h" /* Datatypes */
#ifdef H5_HAVE_GETTIMEOFDAY
#include <sys/time.h>
#endif /* H5_HAVE_GETTIMEOFDAY */
/****************/
/* Local Macros */
/****************/
#define H5O_MIN_SIZE 32 /*min obj header data size */
/* Load native information for a message, if it's not already present */
/* (Only works for messages with decode callback) */
#define LOAD_NATIVE(F, DXPL, MSG, ERR) \
if(NULL == (MSG)->native) { \
const H5O_msg_class_t *decode_type; \
\
/* Check for shared message */ \
if ((MSG)->flags & H5O_FLAG_SHARED) \
decode_type = H5O_MSG_SHARED; \
else \
decode_type = (MSG)->type; \
\
/* Decode the message */ \
HDassert(decode_type->decode); \
if(NULL == ((MSG)->native = (decode_type->decode)((F), (DXPL), (MSG)->raw))) \
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, ERR, "unable to decode message") \
} /* end if */
/* Private typedefs */
/******************/
/* Local Typedefs */
/******************/
/* User data for iteration while removing a message */
typedef struct {
H5F_t *f; /* Pointer to file for insertion */
hid_t dxpl_id; /* DXPL during iteration */
int sequence; /* Sequence # to search for */
unsigned nfailed; /* # of failed message removals */
H5O_operator_t op; /* Callback routine for removal operations */
void *op_data; /* Callback data for removal operations */
hbool_t adj_link; /* Whether to adjust links when removing messages */
} H5O_iter_ud1_t;
/* Typedef for "internal library" iteration operations */
typedef herr_t (*H5O_lib_operator_t)(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/,
unsigned sequence, unsigned *oh_flags_ptr/*out*/, void *operator_data/*in,out*/);
/* Some syntactic sugar to make the compiler happy with two different kinds of iterator callbacks */
typedef union {
H5O_operator_t app_op; /* Application callback for each message */
H5O_lib_operator_t lib_op; /* Library internal callback for each message */
} H5O_mesg_operator_t;
/*
* This table contains a list of object types, descriptions, and the
* functions that determine if some object is a particular type. The table
* is allocated dynamically.
*/
typedef struct H5O_typeinfo_t {
H5G_obj_t type; /*one of the public H5G_* types */
htri_t (*isa)(H5O_t*); /*function to determine type */
char *desc; /*description of object type */
} H5O_typeinfo_t;
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static hid_t H5O_open_by_loc(H5G_loc_t *obj_loc, hid_t dxpl_id);
static H5O_loc_t * H5O_get_oloc(hid_t id);
static herr_t H5O_new(H5F_t *f, hid_t dxpl_id, size_t chunk_size,
H5O_loc_t *loc/*out*/, haddr_t header);
static herr_t H5O_reset_real(const H5O_msg_class_t *type, void *native);
static void * H5O_copy_real(const H5O_msg_class_t *type, const void *mesg,
void *dst);
static int H5O_count_real(H5O_loc_t *loc, const H5O_msg_class_t *type,
hid_t dxpl_id);
static unsigned H5O_find_in_ohdr(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
const H5O_msg_class_t **type_p, int sequence);
static int H5O_modify_real(H5O_loc_t *loc, const H5O_msg_class_t *type,
int overwrite, unsigned flags, unsigned update_flags, const void *mesg,
hid_t dxpl_id);
static int H5O_append_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
const H5O_msg_class_t *type, unsigned flags, const void *mesg,
unsigned * oh_flags_ptr);
static herr_t H5O_remove_real(const H5O_loc_t *loc, const H5O_msg_class_t *type,
int sequence, H5O_operator_t op, void *op_data, hbool_t adj_link, hid_t dxpl_id);
static herr_t H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg,
uint8_t *new_gap_loc, size_t new_gap_size);
static herr_t H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
uint8_t *new_gap_loc, size_t new_gap_size);
static unsigned H5O_alloc(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
const H5O_msg_class_t *type, size_t size, hbool_t * oh_dirtied_ptr);
static herr_t H5O_alloc_msgs(H5O_t *oh, size_t min_alloc);
static herr_t H5O_alloc_null(H5O_t *oh, unsigned null_idx,
const H5O_msg_class_t *new_type, void *new_native, size_t new_size);
static herr_t H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
H5O_mesg_t *mesg, hbool_t delete_mesg, hbool_t adj_link);
static htri_t H5O_move_msgs_forward(H5O_t *oh);
static htri_t H5O_merge_null(H5O_t *oh);
static htri_t H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
static herr_t H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
static htri_t H5O_alloc_extend_chunk(H5F_t *f, H5O_t *oh,
unsigned chunkno, size_t size, unsigned * msg_idx);
static unsigned H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
size_t size);
static herr_t H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh);
static herr_t H5O_delete_mesg(H5F_t *f, hid_t dxpl_id, H5O_mesg_t *mesg,
hbool_t adj_link);
static unsigned H5O_new_mesg(H5F_t *f, H5O_t *oh, unsigned *flags,
const H5O_msg_class_t *orig_type, const void *orig_mesg, H5O_shared_t *sh_mesg,
const H5O_msg_class_t **new_type, const void **new_mesg, hid_t dxpl_id,
unsigned * oh_flags_ptr);
static herr_t H5O_write_mesg(H5O_t *oh, unsigned idx, const H5O_msg_class_t *type,
const void *mesg, unsigned flags, unsigned update_flags,
unsigned * oh_flags_ptr);
static herr_t H5O_iterate_real(const H5O_loc_t *loc, const H5O_msg_class_t *type,
H5AC_protect_t prot, hbool_t internal, H5O_mesg_operator_t op, void *op_data, hid_t dxpl_id);
static const H5O_obj_class_t *H5O_obj_class(H5O_loc_t *loc, hid_t dxpl_id);
static H5G_obj_t H5O_obj_type_real(H5O_t *oh);
static const H5O_obj_class_t *H5O_obj_class_real(H5O_t *oh);
static herr_t H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
hid_t dxpl_id, H5O_copy_t *cpy_info);
static herr_t H5O_copy_free_addrmap_cb(void *item, void *key, void *op_data);
/*********************/
/* Package Variables */
/*********************/
/* Header message ID to class mapping */
const H5O_msg_class_t *const H5O_msg_class_g[] = {
H5O_MSG_NULL, /*0x0000 Null */
H5O_MSG_SDSPACE, /*0x0001 Simple Dimensionality */
H5O_MSG_LINFO, /*0x0002 Link information */
H5O_MSG_DTYPE, /*0x0003 Data Type */
H5O_MSG_FILL, /*0x0004 Old data storage -- fill value */
H5O_MSG_FILL_NEW, /*0x0005 New Data storage -- fill value */
H5O_MSG_LINK, /*0x0006 Link */
H5O_MSG_EFL, /*0x0007 Data storage -- external data files */
H5O_MSG_LAYOUT, /*0x0008 Data Layout */
#ifdef H5O_ENABLE_BOGUS
H5O_MSG_BOGUS, /*0x0009 "Bogus" */
#else /* H5O_ENABLE_BOGUS */
NULL, /*0x0009 "Bogus" */
#endif /* H5O_ENABLE_BOGUS */
H5O_MSG_GINFO, /*0x000A Group Information */
H5O_MSG_PLINE, /*0x000B Data storage -- filter pipeline */
H5O_MSG_ATTR, /*0x000C Attribute list */
H5O_MSG_NAME, /*0x000D Object name */
H5O_MSG_MTIME, /*0x000E Object modification date and time */
H5O_MSG_SHARED, /*0x000F Shared header message */
H5O_MSG_CONT, /*0x0010 Object header continuation */
H5O_MSG_STAB, /*0x0011 Symbol table */
H5O_MSG_MTIME_NEW, /*0x0012 New Object modification date and time */
};
/* Header object ID to class mapping */
/*
* Initialize the object class info table. Begin with the most general types
* and end with the most specific. For instance, any object that has a
* datatype message is a datatype but only some of them are datasets.
*/
const H5O_obj_class_t *const H5O_obj_class_g[] = {
H5O_OBJ_DATATYPE, /* Datatype object (H5G_TYPE - 2) */
H5O_OBJ_DATASET, /* Dataset object (H5G_DATASET - 1) */
H5O_OBJ_GROUP, /* Group object (H5G_GROUP - 0) */
};
/* Declare a free list to manage the H5O_t struct */
H5FL_DEFINE(H5O_t);
/* Declare a free list to manage the H5O_mesg_t sequence information */
H5FL_SEQ_DEFINE(H5O_mesg_t);
/* Declare a free list to manage the H5O_chunk_t sequence information */
H5FL_SEQ_DEFINE(H5O_chunk_t);
/* Declare a free list to manage the chunk image information */
H5FL_BLK_DEFINE(chunk_image);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Declare external the free list for time_t's */
H5FL_EXTERN(time_t);
/* Declare extern the free list for H5O_cont_t's */
H5FL_EXTERN(H5O_cont_t);
/* Declare a free list to manage the H5O_addr_map_t struct */
H5FL_EXTERN(H5O_addr_map_t);
/*-------------------------------------------------------------------------
* Function: H5Oopen
*
* Purpose: Opens an object within an HDF5 file.
*
* This function opens an object in the same way that H5Gopen,
* H5Topen, and H5Dopen do. However, H5Oopen doesn't require
* the type of object to be known beforehand. This can be
* useful in user-defined links, for instance, when only a
* path is known.
*
* The opened object should be closed again with H5Oclose
* or H5Gclose, H5Tclose, or H5Dclose.
*
* Return: Success: An open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
hid_t
H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Entry at 'name' found */
hid_t ret_value = FAIL;
FUNC_ENTER_API(H5Oopen, FAIL)
H5TRACE3("i","isi",loc_id,name,lapl_id);
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!name || !*name)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no name")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
/* Find the object's location */
if(H5G_loc_find(&loc, name, &obj_loc/*out*/, lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
loc_found = TRUE;
if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
if(ret_value < 0)
if(loc_found)
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_API(ret_value)
} /* end H5Oopen() */
/*-------------------------------------------------------------------------
* Function: H5Oopen_by_addr
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function opens an object using its address within the
* HDF5 file, similar to an HDF5 hard link. The open object
* is identical to an object opened with H5Oopen() and should
* be closed with H5Oclose() or a type-specific closing
* function (such as H5Gclose() ).
*
* This function is very dangerous if called on an invalid
* address. For this reason, H5Oincr_refcount() should be
* used to prevent HDF5 from deleting any object that is
* referenced by address (e.g. by a user-defined link).
* H5Odecr_refcount() should be used when the object is
* no longer being referenced by address (e.g. when the UD link
* is deleted).
*
* The address of the HDF5 file on disk has no effect on
* H5Oopen_by_addr(), nor does the use of any unusual file
* drivers. The "address" is really the offset within the
* HDF5 file, and HDF5's file drivers will transparently
* map this to an address on disk for the filesystem.
*
* Return: Success: An open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
hid_t
H5Oopen_by_addr(hid_t loc_id, haddr_t addr)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t obj_oloc; /* Opened object object location */
hbool_t loc_found = FALSE; /* Location at 'name' found */
hid_t ret_value = FAIL;
FUNC_ENTER_API(H5Oopen_by_addr, FAIL)
H5TRACE2("i","ia",loc_id,addr);
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(addr == 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no address supplied")
/* Set up opened group location to fill in */
obj_loc.oloc = &obj_oloc;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
obj_loc.oloc->addr = addr;
obj_loc.oloc->file = loc.oloc->file;
H5G_name_reset(obj_loc.path);
if((ret_value = H5O_open_by_loc(&obj_loc, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
if(ret_value < 0) {
if(loc_found) {
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
}
} /* end if */
FUNC_LEAVE_API(ret_value)
} /* end H5Oopen_by_addr() */
/*-------------------------------------------------------------------------
* Function: H5Oclose
*
* Purpose: Close an open file object.
*
* This is the companion to H5Oopen. It is used to close any
* open object in an HDF5 file (but not IDs are that not file
* objects, such as property lists and dataspaces). It has
* the same effect as calling H5Gclose, H5Dclose, or H5Tclose.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oclose(hid_t object_id)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Oclose, FAIL)
H5TRACE1("e","i",object_id);
/* Get the type of the object and close it in the correct way */
switch(H5I_get_type(object_id))
{
case(H5I_GROUP):
case(H5I_DATATYPE):
case(H5I_DATASET):
if(H5I_object(object_id) == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object")
if(H5I_dec_ref(object_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "unable to close object")
break;
default:
HGOTO_ERROR(H5E_ARGS, H5E_CANTRELEASE, FAIL, "not a valid file object ID (dataset, group, or datatype)")
break;
} /* end switch */
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Oclose() */
/*-------------------------------------------------------------------------
* Function: H5Oincr_refcount
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function increments the "hard link" reference count
* for an object. It should be used when a user-defined link
* that references an object by address is created. When the
* link is deleted, H5Odecr_refcount should be used.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Oincr_refcount(hid_t object_id)
{
H5O_loc_t *oloc;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Oincr_refcount, FAIL)
H5TRACE1("e","i",object_id);
/* Get the object's oloc so we can adjust its link count */
if((oloc = H5O_get_oloc(object_id)) == NULL)
HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID")
if(H5O_link(oloc, 1, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5O_incr_refcount() */
/*-------------------------------------------------------------------------
* Function: H5Odecr_refcount
*
* Purpose: Warning! This function is EXTREMELY DANGEROUS!
* Improper use can lead to FILE CORRUPTION, INACCESSIBLE DATA,
* and other VERY BAD THINGS!
*
* This function decrements the "hard link" reference count
* for an object. It should be used when user-defined links
* that reference an object by address are deleted, and only
* after H5Oincr_refcount has already been used.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* July 14 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5Odecr_refcount(hid_t object_id)
{
H5O_loc_t *oloc;
herr_t ret_value = SUCCEED;
FUNC_ENTER_API(H5Odecr_refcount, FAIL)
H5TRACE1("e","i",object_id);
/* Get the object's oloc so we can adjust its link count */
if((oloc = H5O_get_oloc(object_id)) == NULL)
HGOTO_ERROR(H5E_ATOM, H5E_BADVALUE, FAIL, "unable to get object location from ID")
if(H5O_link(oloc, -1, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "modifying object link count failed")
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Odecr_refcount() */
/*-------------------------------------------------------------------------
* Function: H5O_open_by_loc
*
* Purpose: Opens an object and returns an ID given its group loction.
*
* Return: Success: Open object identifier
* Failure: Negative
*
* Programmer: James Laird
* July 25 2006
*
*-------------------------------------------------------------------------
*/
static hid_t
H5O_open_by_loc(H5G_loc_t *obj_loc, hid_t dxpl_id)
{
const H5O_obj_class_t *obj_class; /* Class of object for location */
hid_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_open_by_loc)
HDassert(obj_loc);
/* Get the object class for this location */
if(NULL == (obj_class = H5O_obj_class(obj_loc->oloc, dxpl_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to determine object class")
/* Call the object's 'open' routine */
HDassert(obj_class->open);
if((ret_value = obj_class->open(obj_loc, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_open_by_loc() */
/*-------------------------------------------------------------------------
* Function: H5O_get_oloc
*
* Purpose: Gets the oloc for an object given its ID.
*
* Return: Success: Pointer to H5O_loc_t
* Failure: NULL
*
* Programmer: James Laird
* July 25 2006
*
*-------------------------------------------------------------------------
*/
static H5O_loc_t *
H5O_get_oloc(hid_t object_id)
{
H5O_loc_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_get_oloc)
switch(H5I_get_type(object_id))
{
case(H5I_GROUP):
if(NULL == (ret_value = H5O_OBJ_GROUP->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from group ID")
break;
case(H5I_DATASET):
if(NULL == (ret_value = H5O_OBJ_DATASET->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from dataset ID")
break;
case(H5I_DATATYPE):
if(NULL == (ret_value = H5O_OBJ_DATATYPE->get_oloc(object_id)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, NULL, "unable to get object location from datatype ID")
break;
default:
HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, NULL, "invalid object type")
} /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_oloc() */
/*-------------------------------------------------------------------------
* Function: H5O_create
*
* Purpose: Creates a new object header. Allocates space for it and
* then calls an initialization function. The object header
* is opened for write access and should eventually be
* closed by calling H5O_close().
*
* Return: Success: Non-negative, the ENT argument contains
* information about the object header,
* including its address.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_create(H5F_t *f, hid_t dxpl_id, size_t size_hint, H5O_loc_t *loc/*out*/)
{
haddr_t header; /* Address of object header */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI(H5O_create, FAIL)
/* check args */
HDassert(f);
HDassert(loc);
/* Make certain we allocate at least a reasonable size for the object header */
size_hint = H5O_ALIGN_F(f, MAX(H5O_MIN_SIZE, size_hint));
/* allocate disk space for header and first chunk */
if(HADDR_UNDEF == (header = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id,
(hsize_t)H5O_SIZEOF_HDR_F(f) + size_hint)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for object header header")
/* initialize the object header */
if(H5O_new(f, dxpl_id, size_hint, loc, header) != SUCCEED)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to initialize object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_create() */
/*-------------------------------------------------------------------------
* Function: H5O_new
*
* Purpose: Initialize a new object header, sets the link count to 0,
* and caches the header. The object header is opened for
* write access and should eventually be closed by calling
* H5O_close().
*
* Return: Success: SUCCEED, the LOC argument contains
* information about the object header,
* including its address.
* Failure: FAIL
*
* Programmer: Bill Wendling
* 1, November 2002
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_new(H5F_t *f, hid_t dxpl_id, size_t chunk_size, H5O_loc_t *loc/*out*/,
haddr_t header)
{
H5O_t *oh = NULL;
size_t oh_size; /* Size of initial object header */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_new)
/* check args */
HDassert(f);
HDassert(loc);
/* Set up object location */
loc->file = f;
loc->addr = header;
/* Allocate the object header and fill in header fields */
if(NULL == (oh = H5FL_MALLOC(H5O_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize rudimentary information object object header */
oh->version = H5F_USE_LATEST_FORMAT(f) ? H5O_VERSION_LATEST : H5O_VERSION_1;
oh->nlink = 0;
/* Compute total size of initial object header */
/* (i.e. object header prefix and first chunk) */
oh_size = H5O_SIZEOF_HDR_OH(oh) + chunk_size;
/* Create the chunk list */
oh->nchunks = oh->alloc_nchunks = 1;
if(NULL == (oh->chunk = H5FL_SEQ_MALLOC(H5O_chunk_t, (size_t)oh->alloc_nchunks)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize the first chunk */
oh->chunk[0].dirty = TRUE;
oh->chunk[0].addr = loc->addr;
oh->chunk[0].size = oh_size;
oh->chunk[0].gap = 0;
/* Allocate enough space for the first chunk */
/* (including space for serializing the object header prefix */
if(NULL == (oh->chunk[0].image = H5FL_BLK_CALLOC(chunk_image, oh_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Put magic # for object header in first chunk */
if(oh->version > H5O_VERSION_1)
HDmemcpy(oh->chunk[0].image, H5O_HDR_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
/* Create the message list */
oh->nmesgs = 1;
oh->alloc_nmesgs = H5O_NMESGS;
if(NULL == (oh->mesg = H5FL_SEQ_CALLOC(H5O_mesg_t, oh->alloc_nmesgs)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize the first message */
oh->mesg[0].type = H5O_MSG_NULL;
oh->mesg[0].dirty = TRUE;
oh->mesg[0].native = NULL;
oh->mesg[0].raw = oh->chunk[0].image + (H5O_SIZEOF_HDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)) + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[0].raw_size = chunk_size - H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[0].chunkno = 0;
/* Cache object header */
if(H5AC_set(f, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to cache object header")
/* Open it */
if(H5O_open(loc) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTOPENOBJ, FAIL, "unable to open object header")
done:
if(ret_value < 0 && oh) {
if(H5O_dest(f, oh) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data")
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_new() */
/*-------------------------------------------------------------------------
* Function: H5O_open
*
* Purpose: Opens an object header which is described by the symbol table
* entry OBJ_ENT.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, January 5, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_open(const H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOFUNC(H5O_open)
/* Check args */
HDassert(loc);
HDassert(loc->file);
#ifdef H5O_DEBUG
if (H5DEBUG(O))
HDfprintf(H5DEBUG(O), "> %a\n", loc->addr);
#endif
/* Increment open-lock counters */
loc->file->nopen_objs++;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_open() */
/*-------------------------------------------------------------------------
* Function: H5O_close
*
* Purpose: Closes an object header that was previously open.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, January 5, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_close(H5O_loc_t *loc)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_close, FAIL)
/* Check args */
HDassert(loc);
HDassert(loc->file);
HDassert(loc->file->nopen_objs > 0);
/* Decrement open-lock counters */
--loc->file->nopen_objs;
#ifdef H5O_DEBUG
if(H5DEBUG(O)) {
if(loc->file->file_id < 0 && 1 == loc->file->shared->nrefs)
HDfprintf(H5DEBUG(O), "< %a auto %lu remaining\n",
loc->addr,
(unsigned long)(loc->file->nopen_objs));
else
HDfprintf(H5DEBUG(O), "< %a\n", loc->addr);
} /* end if */
#endif
/*
* If the file open object count has reached the number of open mount points
* (each of which has a group open in the file) attempt to close the file.
*/
if(loc->file->nopen_objs == loc->file->mtab.nmounts)
/* Attempt to close down the file hierarchy */
if(H5F_try_close(loc->file) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCLOSEFILE, FAIL, "problem attempting file close")
/* Release location information */
if(H5O_loc_free(loc) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "problem attempting to free location")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_close() */
/*-------------------------------------------------------------------------
* Function: H5O_reset
*
* Purpose: Some message data structures have internal fields that
* need to be freed. This function does that if appropriate
* but doesn't free NATIVE.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 12 1997
*
* Modifications:
* Changed to use IDs for types, instead of type objects, then
* call "real" routine.
* Quincey Koziol
* Feb 14 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_reset(unsigned type_id, void *native)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_reset, FAIL)
/* check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" reset routine */
if(H5O_reset_real(type, native) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRESET, FAIL, "unable to reset object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_reset() */
/*-------------------------------------------------------------------------
* Function: H5O_reset_real
*
* Purpose: Some message data structures have internal fields that
* need to be freed. This function does that if appropriate
* but doesn't free NATIVE.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 12 1997
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_reset_real(const H5O_msg_class_t *type, void *native)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_reset_real)
/* check args */
HDassert(type);
if(native) {
if(type->reset) {
if((type->reset)(native) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "reset method failed")
} else
HDmemset(native, 0, type->native_size);
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_reset_real() */
/*-------------------------------------------------------------------------
* Function: H5O_free
*
* Purpose: Similar to H5O_reset() except it also frees the message
* pointer.
*
* Return: Success: NULL
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Thursday, May 21, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
void *
H5O_free(unsigned type_id, void *mesg)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
void * ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOFUNC(H5O_free)
/* check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" free routine */
ret_value = H5O_free_real(type, mesg);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_free() */
/*-------------------------------------------------------------------------
* Function: H5O_free_mesg
*
* Purpose: Call H5O_free_real() on a message.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Tuesday, Sep 6, 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_free_mesg(H5O_mesg_t *mesg)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_free_mesg)
/* check args */
HDassert(mesg);
/* Free any native information */
if(mesg->flags & H5O_FLAG_SHARED)
mesg->native = H5O_free_real(H5O_MSG_SHARED, mesg->native);
else
mesg->native = H5O_free_real(mesg->type, mesg->native);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_free_mesg() */
/*-------------------------------------------------------------------------
* Function: H5O_free_real
*
* Purpose: Similar to H5O_reset() except it also frees the message
* pointer.
*
* Return: Success: NULL
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Thursday, May 21, 1998
*
*-------------------------------------------------------------------------
*/
void *
H5O_free_real(const H5O_msg_class_t *type, void *msg_native)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_free_real)
/* check args */
HDassert(type);
if(msg_native) {
H5O_reset_real(type, msg_native);
if (NULL!=(type->free))
(type->free)(msg_native);
else
H5MM_xfree(msg_native);
} /* end if */
FUNC_LEAVE_NOAPI(NULL)
} /* end H5O_free_real() */
/*-------------------------------------------------------------------------
* Function: H5O_copy
*
* Purpose: Copies a message. If MESG is is the null pointer then a null
* pointer is returned with no error.
*
* Return: Success: Ptr to the new message
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Thursday, May 21, 1998
*
* Modifications:
* Changed to use IDs for types, instead of type objects, then
* call "real" routine.
* Quincey Koziol
* Feb 14 2003
*
*-------------------------------------------------------------------------
*/
void *
H5O_copy (unsigned type_id, const void *mesg, void *dst)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
void *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_copy, NULL)
/* check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" copy routine */
if((ret_value = H5O_copy_real(type, mesg, dst)) == NULL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, NULL, "unable to copy object header message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_real
*
* Purpose: Copies a message. If MESG is is the null pointer then a null
* pointer is returned with no error.
*
* Return: Success: Ptr to the new message
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Thursday, May 21, 1998
*
*-------------------------------------------------------------------------
*/
static void *
H5O_copy_real(const H5O_msg_class_t *type, const void *mesg, void *dst)
{
void *ret_value = NULL;
FUNC_ENTER_NOAPI_NOINIT(H5O_copy_real)
/* check args */
HDassert(type);
HDassert(type->copy);
if(mesg)
if(NULL == (ret_value = (type->copy)(mesg, dst, 0)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to copy object header message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_real() */
/*-------------------------------------------------------------------------
* Function: H5O_link
*
* Purpose: Adjust the link count for an object header by adding
* ADJUST to the link count.
*
* Return: Success: New link count
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 5 1997
*
*-------------------------------------------------------------------------
*/
int
H5O_link(const H5O_loc_t *loc, int adjust, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET; /* used to indicate whether the
* object was deleted as a result
* of this action.
*/
int ret_value = FAIL;
FUNC_ENTER_NOAPI(H5O_link, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
if(adjust != 0 && 0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* get header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr,
NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* adjust link count */
if(adjust < 0) {
if(oh->nlink + adjust < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, FAIL, "link count would be negative")
oh->nlink += adjust;
oh_flags |= H5AC__DIRTIED_FLAG;
/* Check if the object should be deleted */
if(oh->nlink == 0) {
/* Check if the object is still open by the user */
if(H5FO_opened(loc->file, loc->addr) != NULL) {
/* Flag the object to be deleted when it's closed */
if(H5FO_mark(loc->file, loc->addr, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion")
} /* end if */
else {
/* Delete object right now */
if(H5O_delete_oh(loc->file, dxpl_id, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file")
/* Mark the object header as deleted */
oh_flags = H5C__DELETED_FLAG;
} /* end else */
} /* end if */
} else if (adjust > 0) {
/* A new object, or one that will be deleted */
if(oh->nlink == 0) {
/* Check if the object is current open, but marked for deletion */
if(H5FO_marked(loc->file, loc->addr) > 0) {
/* Remove "delete me" flag on the object */
if(H5FO_mark(loc->file, loc->addr, FALSE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't mark object for deletion")
} /* end if */
} /* end if */
oh->nlink += adjust;
oh_flags |= H5AC__DIRTIED_FLAG;
} /* end if */
/* Set return value */
ret_value = oh->nlink;
done:
if (oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_link() */
/*-------------------------------------------------------------------------
* Function: H5O_count
*
* Purpose: Counts the number of messages in an object header which are a
* certain type.
*
* Return: Success: Number of messages of specified type.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Tuesday, April 21, 1998
*
*-------------------------------------------------------------------------
*/
int
H5O_count(H5O_loc_t *loc, unsigned type_id, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
int ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_count, FAIL)
/* Check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" count routine */
if((ret_value = H5O_count_real(loc, type, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOUNT, FAIL, "unable to count object header messages")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_count() */
/*-------------------------------------------------------------------------
* Function: H5O_count_real
*
* Purpose: Counts the number of messages in an object header which are a
* certain type.
*
* Return: Success: Number of messages of specified type.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* Tuesday, April 21, 1998
*
*-------------------------------------------------------------------------
*/
static int
H5O_count_real(H5O_loc_t *loc, const H5O_msg_class_t *type, hid_t dxpl_id)
{
H5O_t *oh = NULL;
int acc;
unsigned u;
int ret_value;
FUNC_ENTER_NOAPI(H5O_count_real, FAIL)
/* Check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type);
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Loop over all messages, counting the ones of the type looked for */
for(u = acc = 0; u < oh->nmesgs; u++)
if(oh->mesg[u].type == type)
acc++;
/* Set return value */
ret_value = acc;
done:
if (oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_count_real() */
/*-------------------------------------------------------------------------
* Function: H5O_exists
*
* Purpose: Determines if a particular message exists in an object
* header without trying to decode the message.
*
* Return: Success: FALSE if the message does not exist; TRUE if
* th message exists.
*
* Failure: FAIL if the existence of the message could
* not be determined due to some error such as
* not being able to read the object header.
*
* Programmer: Robb Matzke
* Monday, November 2, 1998
*
*-------------------------------------------------------------------------
*/
htri_t
H5O_exists(H5O_loc_t *loc, unsigned type_id, int sequence, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header for location */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_exists, FAIL)
HDassert(loc);
HDassert(loc->file);
HDassert(type_id < NELMTS(H5O_msg_class_g));
HDassert(sequence >= 0);
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Call the "real" exists routine */
if((ret_value = H5O_exists_oh(oh, type_id, sequence)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_READERROR, FAIL, "unable to verify object header message")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_exists() */
/*-------------------------------------------------------------------------
* Function: H5O_exists_oh
*
* Purpose: Determines if a particular message exists in an object
* header without trying to decode the message.
*
* Return: Success: FALSE if the message does not exist; TRUE if
* th message exists.
*
* Failure: FAIL if the existence of the message could
* not be determined due to some error such as
* not being able to read the object header.
*
* Programmer: Robb Matzke
* Monday, November 2, 1998
*
*-------------------------------------------------------------------------
*/
htri_t
H5O_exists_oh(H5O_t *oh, unsigned type_id, int sequence)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
unsigned u; /* Local index variable */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_exists_oh)
HDassert(oh);
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(sequence >= 0);
/* Scan through the messages looking for the right one */
for(u = 0; u < oh->nmesgs; u++) {
if(type->id != oh->mesg[u].type->id)
continue;
if(--sequence < 0)
break;
} /* end for */
/* Set return value */
ret_value = (sequence < 0);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_exists_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_read
*
* Purpose: Reads a message from an object header and returns a pointer
* to it. The caller will usually supply the memory through
* MESG and the return value will be MESG. But if MESG is
* the null pointer, then this function will malloc() memory
* to hold the result and return its pointer instead.
*
* Return: Success: Ptr to message in native format. The message
* should be freed by calling H5O_reset(). If
* MESG is a null pointer then the caller should
* also call H5MM_xfree() on the return value
* after calling H5O_reset().
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
void *
H5O_read(const H5O_loc_t *loc, unsigned type_id, int sequence, void *mesg, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
void *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_read, NULL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(sequence >= 0);
/* Call the "real" read routine */
if((ret_value = H5O_read_real(loc, type, sequence, mesg, dxpl_id)) == NULL)
HGOTO_ERROR(H5E_OHDR, H5E_READERROR, NULL, "unable to load object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_read() */
/*-------------------------------------------------------------------------
* Function: H5O_read_real
*
* Purpose: Reads a message from an object header and returns a pointer
* to it. The caller will usually supply the memory through
* MESG and the return value will be MESG. But if MESG is
* the null pointer, then this function will malloc() memory
* to hold the result and return its pointer instead.
*
* Return: Success: Ptr to message in native format. The message
* should be freed by calling H5O_reset(). If
* MESG is a null pointer then the caller should
* also call H5MM_xfree() on the return value
* after calling H5O_reset().
*
* Failure: NULL
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
void *
H5O_read_real(const H5O_loc_t *loc, const H5O_msg_class_t *type, int sequence, void *mesg, hid_t dxpl_id)
{
H5O_t *oh = NULL;
int idx;
void *ret_value = NULL;
FUNC_ENTER_NOAPI_NOINIT(H5O_read_real)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type);
HDassert(sequence >= 0);
/* copy the message to the user-supplied buffer */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header")
/* can we get it from the object header? */
if((idx = H5O_find_in_ohdr(loc->file, dxpl_id, oh, &type, sequence)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, NULL, "unable to find message in object header")
if(oh->mesg[idx].flags & H5O_FLAG_SHARED) {
/*
* If the message is shared then then the native pointer points to an
* H5O_MSG_SHARED message. We use that information to look up the real
* message in the global heap or some other object header.
*/
H5O_shared_t *shared;
shared = (H5O_shared_t *)(oh->mesg[idx].native);
ret_value = H5O_shared_read(loc->file, dxpl_id, shared, type, mesg);
} else {
/*
* The message is not shared, but rather exists in the object
* header. The object header caches the native message (along with
* the raw message) so we must copy the native message before
* returning.
*/
if(NULL == (ret_value = (type->copy) (oh->mesg[idx].native, mesg, 0)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to copy message to user space")
} /* end else */
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_read_real() */
/*-------------------------------------------------------------------------
* Function: H5O_find_in_ohdr
*
* Purpose: Find a message in the object header without consulting
* a symbol table entry.
*
* Return: Success: Index number of message.
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* Bill Wendling, 2003-09-30
* Modified so that the object header needs to be AC_protected
* before calling this function.
*-------------------------------------------------------------------------
*/
static unsigned
H5O_find_in_ohdr(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t **type_p, int sequence)
{
unsigned u;
unsigned ret_value;
FUNC_ENTER_NOAPI_NOINIT(H5O_find_in_ohdr)
/* Check args */
HDassert(f);
HDassert(oh);
HDassert(type_p);
/* Scan through the messages looking for the right one */
for(u = 0; u < oh->nmesgs; u++) {
if(*type_p && (*type_p)->id != oh->mesg[u].type->id)
continue;
if(--sequence < 0)
break;
} /* end for */
if(sequence >= 0)
HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, UFAIL, "unable to find object header message")
/*
* Decode the message if necessary. If the message is shared then decode
* a shared message, ignoring the message type.
*/
LOAD_NATIVE(f, dxpl_id, &(oh->mesg[u]), UFAIL)
/*
* Return the message type. If this is a shared message then return the
* pointed-to type.
*/
*type_p = oh->mesg[u].type;
/* Set return value */
ret_value = u;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_find_in_ohdr() */
/*-------------------------------------------------------------------------
* Function: H5O_modify
*
* Purpose: Modifies an existing message or creates a new message.
* The cache fields in that symbol table entry ENT are *not*
* updated, you must do that separately because they often
* depend on multiple object header messages. Besides, we
* don't know which messages will be constant and which will
* not.
*
* The OVERWRITE argument is either a sequence number of a
* message to overwrite (usually zero) or the constant
* H5O_NEW_MESG (-1) to indicate that a new message is to
* be created. If the message to overwrite doesn't exist then
* it is created (but only if it can be inserted so its sequence
* number is OVERWRITE; that is, you can create a message with
* the sequence number 5 if there is no message with sequence
* number 4).
*
* The UPDATE_TIME argument is a boolean that allows the caller
* to skip updating the modification time. This is useful when
* several calls to H5O_modify will be made in a sequence.
*
* Return: Success: The sequence number of the message that
* was modified or created.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
/* JAMES: this will probably get put through its paces when extending shared
* dataspaces */
int
H5O_modify(H5O_loc_t *loc, unsigned type_id, int overwrite,
unsigned flags, unsigned update_flags, void *mesg, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
htri_t shared_mess;
int ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_modify, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(mesg);
HDassert(0 == (flags & ~H5O_FLAG_BITS));
/* Should this message be written as a SOHM? */
if((shared_mess = H5SM_try_share(loc->file, dxpl_id, type_id, mesg)) >0)
{
/* Mark the message as shared */
flags |= H5O_FLAG_SHARED;
} else if(shared_mess < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADMESG, FAIL, "error while trying to share message");
/* Call the "real" modify routine */
if((ret_value = H5O_modify_real(loc, type, overwrite, flags, update_flags, mesg, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to write object header message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_modify() */
/*-------------------------------------------------------------------------
* Function: H5O_modify_real
*
* Purpose: Modifies an existing message or creates a new message.
* The cache fields in that symbol table entry ENT are *not*
* updated, you must do that separately because they often
* depend on multiple object header messages. Besides, we
* don't know which messages will be constant and which will
* not.
*
* The OVERWRITE argument is either a sequence number of a
* message to overwrite (usually zero) or the constant
* H5O_NEW_MESG (-1) to indicate that a new message is to
* be created. If the message to overwrite doesn't exist then
* it is created (but only if it can be inserted so its sequence
* number is OVERWRITE; that is, you can create a message with
* the sequence number 5 if there is no message with sequence
* number 4).
*
* The UPDATE_TIME argument is a boolean that allows the caller
* to skip updating the modification time. This is useful when
* several calls to H5O_modify will be made in a sequence.
*
* Return: Success: The sequence number of the message that
* was modified or created.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
static int
H5O_modify_real(H5O_loc_t *loc, const H5O_msg_class_t *type, int overwrite,
unsigned flags, unsigned update_flags, const void *mesg, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET;
int sequence;
unsigned idx; /* Index of message to modify */
H5O_mesg_t *idx_msg; /* Pointer to message to modify */
H5O_shared_t sh_mesg;
const H5O_msg_class_t *write_type = type; /* Type of message to be written */
const void *write_mesg = mesg; /* Actual message being written */
int ret_value;
FUNC_ENTER_NOAPI_NOINIT(H5O_modify_real)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type);
HDassert(mesg);
HDassert(0 == (flags & ~H5O_FLAG_BITS));
/* Check for write access on the file */
if(0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Protect the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Count similar messages */
for(idx = 0, sequence = -1, idx_msg=&oh->mesg[0]; idx < oh->nmesgs; idx++, idx_msg++) {
if(type->id != idx_msg->type->id)
continue;
if(++sequence == overwrite)
break;
} /* end for */
/* Was the right message found? */
if(overwrite >= 0 && (idx >= oh->nmesgs || sequence != overwrite)) {
/* No, but can we insert a new one with this sequence number? */
if(overwrite == sequence + 1)
overwrite = -1;
else
HGOTO_ERROR(H5E_OHDR, H5E_NOTFOUND, FAIL, "message not found")
} /* end if */
/* Check for creating new message */
if(overwrite < 0) {
/* Create a new message */
/* JAMES: why is sh_mesg passed in here? Is it ever used? */
if((idx = H5O_new_mesg(loc->file, oh, &flags, type, mesg, &sh_mesg, &type, &mesg, dxpl_id, &oh_flags)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to create new message")
/* Set the correct sequence number for the message created */
sequence++;
} else if(oh->mesg[idx].flags & H5O_FLAG_CONSTANT) {
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to modify constant message")
} else if(oh->mesg[idx].flags & H5O_FLAG_SHARED) {
/* This message is shared, but it's being modified. This is valid if
* it's shared in the heap .
* First, make sure it's not a committed message; these can't ever
* be modified.
*/
if(((H5O_shared_t*) oh->mesg[idx].native)->flags & H5O_COMMITTED_FLAG)
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to modify committed message")
/* Remove the old message from the SOHM index */
if(H5SM_try_delete(loc->file, dxpl_id, oh->mesg[idx].type->id, oh->mesg[idx].native) < 0)
HGOTO_ERROR (H5E_OHDR, H5E_CANTFREE, FAIL, "unable to delete message from SOHM table")
/* Now this message is no longer shared and we can safely overwrite
* it.
* We need to make sure that the message we're writing is shared,
* though, and that the library doesn't try to reset the current
* message like it would in a normal overwrite (this message is
* realy a shared pointer, not a real
* message).
* JAMES: will this break if a shared message is overwritten with a larger
* non-shared message?
*/
HDassert(H5O_is_shared(type->id, mesg) > 0); /* JAMES: this should work with
* replacement messages that aren't shared, too. */
if(H5O_get_share(type->id, loc->file, mesg, &sh_mesg)<0)
HGOTO_ERROR (H5E_OHDR, H5E_BADMESG, FAIL, "can't get shared message")
/* Instead of writing the original message, write a shared message */
write_type = H5O_msg_class_g[H5O_SHARED_ID];
write_mesg = &sh_mesg;
}
/* Write the information to the message */
if(H5O_write_mesg(oh, idx, write_type, write_mesg, flags, update_flags, &oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to write message")
/* Update the modification time message if any */
if(update_flags & H5O_UPDATE_TIME)
H5O_touch_oh(loc->file, dxpl_id, oh, FALSE, &oh_flags);
#ifdef H5O_DEBUG
H5O_assert(oh);
#endif /* H5O_DEBUG */
/* Set return value */
ret_value = sequence;
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_modify_real() */
/*-------------------------------------------------------------------------
* Function: H5O_protect
*
* Purpose: Wrapper around H5AC_protect for use during a H5O_protect->
* H5O_append->...->H5O_append->H5O_unprotect sequence of calls
* during an object's creation.
*
* Return: Success: Pointer to the object header structure for the
* object.
*
* Failure: NULL
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
H5O_t *
H5O_protect(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_protect, NULL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
/* Check for write access on the file */
if(0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, NULL, "no write intent on file")
/* Lock the object header into the cache */
if(NULL == (ret_value = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_protect() */
/*-------------------------------------------------------------------------
* Function: H5O_unprotect
*
* Purpose: Wrapper around H5AC_unprotect for use during a H5O_protect->
* H5O_append->...->H5O_append->H5O_unprotect sequence of calls
* during an object's creation.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_unprotect(H5O_loc_t *loc, H5O_t *oh, hid_t dxpl_id, unsigned oh_flags)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_unprotect, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(oh);
/* Release the object header from the cache */
if(H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_unprotect() */
/*-------------------------------------------------------------------------
* Function: H5O_append
*
* Purpose: Simplified version of H5O_modify, used when creating a new
* object header message (usually during object creation)
*
* Return: Success: The sequence number of the message that
* was created.
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
int
H5O_append(H5F_t *f, hid_t dxpl_id, H5O_t *oh, unsigned type_id, unsigned flags,
void *mesg, unsigned * oh_flags_ptr)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
htri_t shared_mess; /* Should this message be stored in the Shared Message table? */
int ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_append, FAIL)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(0 == (flags & ~H5O_FLAG_BITS));
HDassert(mesg);
HDassert(oh_flags_ptr);
/* Should this message be written as a SOHM? */
if((shared_mess = H5SM_try_share(f, dxpl_id, type_id, mesg)) >0)
{
/* Mark the message as shared */
flags |= H5O_FLAG_SHARED;
}
else if(shared_mess < 0)
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "error determining if message should be shared");
if((ret_value = H5O_append_real( f, dxpl_id, oh, type, flags, mesg, oh_flags_ptr)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "unable to append to object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_append() */
/*-------------------------------------------------------------------------
* Function: H5O_append_real
*
* Purpose: Simplified version of H5O_modify, used when creating a new
* object header message (usually during object creation)
*
* Return: Success: The sequence number of the message that
* was created.
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Dec 31 2002
*
*-------------------------------------------------------------------------
*/
static int
H5O_append_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t *type,
unsigned flags, const void *mesg, unsigned * oh_flags_ptr)
{
unsigned idx; /* Index of message to modify */
H5O_shared_t sh_mesg;
int ret_value;
FUNC_ENTER_NOAPI_NOINIT(H5O_append_real)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(type);
HDassert(0 == (flags & ~H5O_FLAG_BITS));
HDassert(mesg);
HDassert(oh_flags_ptr);
/* Create a new message */
if((idx = H5O_new_mesg(f, oh, &flags, type, mesg, &sh_mesg, &type, &mesg, dxpl_id, oh_flags_ptr)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to create new message")
/* Write the information to the message */
if(H5O_write_mesg(oh, idx, type, mesg, flags, 0, oh_flags_ptr) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to write message")
#ifdef H5O_DEBUG
H5O_assert(oh);
#endif /* H5O_DEBUG */
/* Set return value */
ret_value = idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_append_real () */
/*-------------------------------------------------------------------------
* Function: H5O_new_mesg
*
* Purpose: Create a new message in an object header
*
* Return: Success: Index of message
* Failure: Negative
*
* Programmer: Quincey Koziol
* Friday, September 3, 2003
*
*-------------------------------------------------------------------------
*/
static unsigned
H5O_new_mesg(H5F_t *f, H5O_t *oh, unsigned *flags, const H5O_msg_class_t *orig_type,
const void *orig_mesg, H5O_shared_t *sh_mesg, const H5O_msg_class_t **new_type,
const void **new_mesg, hid_t dxpl_id, unsigned * oh_flags_ptr)
{
size_t size; /* Size of space allocated for object header */
htri_t is_shared; /* Is this a shared message? */
unsigned ret_value = UFAIL; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_new_mesg)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(flags);
HDassert(orig_type);
HDassert(orig_mesg);
HDassert(sh_mesg);
HDassert(new_mesg);
HDassert(new_type);
HDassert(oh_flags_ptr);
/* Check for shared message */
if(*flags & H5O_FLAG_SHARED) {
HDmemset(sh_mesg, 0, sizeof(H5O_shared_t));
if ((NULL == orig_type->is_shared) || (NULL == orig_type->get_share))
HGOTO_ERROR(H5E_OHDR, H5E_UNSUPPORTED, UFAIL, "message class is not sharable");
if ((is_shared = (orig_type->is_shared)(orig_mesg)) == FALSE) {
/*
* If the message isn't shared then turn off the shared bit
* and treat it as an unshared message.
*/
*flags &= ~H5O_FLAG_SHARED;
} else if(is_shared > 0) {
/* Message is shared. Get shared message, change message type,
* and use shared information */
if ((orig_type->get_share)(f, orig_mesg, sh_mesg/*out*/) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADMESG, UFAIL, "can't get shared message")
*new_type = H5O_MSG_SHARED;
*new_mesg = sh_mesg;
} else {
HGOTO_ERROR(H5E_OHDR, H5E_BADMESG, UFAIL, "can't determine if message is shared")
}/* end else */
} /* end if */
else {
*new_type = orig_type;
*new_mesg = orig_mesg;
} /* end else */
/* Compute the size needed to store the message on disk */
if((size = ((*new_type)->raw_size)(f, *new_mesg)) >= H5O_MESG_MAX_SIZE)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, UFAIL, "object header message is too large")
/* Allocate space in the object header for the message */
if((ret_value = H5O_alloc(f, dxpl_id, oh, orig_type, size, oh_flags_ptr)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, UFAIL, "unable to allocate space for message")
/* Increment any links in message */
if((*new_type)->link && ((*new_type)->link)(f, dxpl_id, (*new_mesg)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_LINKCOUNT, UFAIL, "unable to adjust shared object link count")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_new_mesg() */
/*-------------------------------------------------------------------------
* Function: H5O_write_mesg
*
* Purpose: Write message to object header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Friday, September 3, 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_write_mesg(H5O_t *oh, unsigned idx, const H5O_msg_class_t *type,
const void *mesg, unsigned flags, unsigned update_flags,
unsigned * oh_flags_ptr)
{
H5O_mesg_t *idx_msg; /* Pointer to message to modify */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_write_mesg)
/* check args */
HDassert(oh);
HDassert(type);
HDassert(mesg);
HDassert(oh_flags_ptr);
/* Set pointer to the correct message */
idx_msg = &oh->mesg[idx];
/* Reset existing native information */
if(!(update_flags & H5O_UPDATE_DATA_ONLY))
H5O_reset_real(type, idx_msg->native);
/* Copy the native value for the message */
if(NULL == (idx_msg->native = (type->copy)(mesg, idx_msg->native, update_flags)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to copy message to object header")
idx_msg->flags = flags;
idx_msg->dirty = TRUE;
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_write_mesg() */
/*-------------------------------------------------------------------------
* Function: H5O_touch_oh
*
* Purpose: If FORCE is non-zero then create a modification time message
* unless one already exists. Then update any existing
* modification time message with the current time.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, July 27, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_touch_oh(H5F_t *f,
hid_t dxpl_id,
H5O_t *oh,
hbool_t force,
unsigned * oh_flags_ptr)
{
time_t now; /* Current time */
unsigned idx; /* Index of modification time message to update */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_touch_oh)
HDassert(oh);
HDassert(oh_flags_ptr);
/* Look for existing message */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_MSG_MTIME == oh->mesg[idx].type || H5O_MSG_MTIME_NEW == oh->mesg[idx].type)
break;
#ifdef H5_HAVE_GETTIMEOFDAY
{
struct timeval now_tv;
HDgettimeofday(&now_tv, NULL);
now = now_tv.tv_sec;
}
#else /* H5_HAVE_GETTIMEOFDAY */
now = HDtime(NULL);
#endif /* H5_HAVE_GETTIMEOFDAY */
/* Create a new message, if necessary */
if(idx == oh->nmesgs) {
size_t size; /* New modification time message size */
/* If we have to create a new message, but we aren't 'forcing' it, get out now */
if(!force)
HGOTO_DONE(SUCCEED); /*nothing to do*/
size = (H5O_MSG_MTIME_NEW->raw_size)(f, &now);
if((idx = H5O_alloc(f, dxpl_id, oh, H5O_MSG_MTIME_NEW, size, oh_flags_ptr)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for modification time message")
} /* end if */
/* Allocate 'native' space, if necessary */
if(NULL == oh->mesg[idx].native) {
if(NULL == (oh->mesg[idx].native = H5FL_MALLOC(time_t)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for modification time message")
} /* end if */
/* Update the message */
*((time_t *)(oh->mesg[idx].native)) = now;
/* Mark the message & object header as dirty */
oh->mesg[idx].dirty = TRUE;
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_touch_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_touch
*
* Purpose: Touch an object by setting the modification time to the
* current time and marking the object as dirty. Unless FORCE
* is non-zero, nothing happens if there is no MTIME message in
* the object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Monday, July 27, 1998
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_touch(H5O_loc_t *loc, hbool_t force, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_touch, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
if(0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Get the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Create/Update the modification time message */
if(H5O_touch_oh(loc->file, dxpl_id, oh, force, &oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object modificaton time")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_touch() */
#ifdef H5O_ENABLE_BOGUS
/*-------------------------------------------------------------------------
* Function: H5O_bogus_oh
*
* Purpose: Create a "bogus" message unless one already exists.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* <koziol@ncsa.uiuc.edu>
* Tuesday, January 21, 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_bogus_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh, hbool_t * oh_flags_ptr)
{
int idx;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER(H5O_bogus_oh, FAIL)
HDassert(f);
HDassert(oh);
HDassert(oh_flags_ptr);
/* Look for existing message */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_MSG_BOGUS == oh->mesg[idx].type)
break;
/* Create a new message */
if(idx == oh->nmesgs) {
size_t size = (H5O_MSG_BOGUS->raw_size)(f, NULL);
if((idx = H5O_alloc(f, dxpl_id, oh, H5O_MSG_BOGUS, size, oh_flags_ptr)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to allocate space for 'bogus' message")
/* Allocate the native message in memory */
if(NULL == (oh->mesg[idx].native = H5MM_malloc(sizeof(H5O_bogus_t))))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "memory allocation failed for 'bogus' message")
/* Update the native part */
((H5O_bogus_t *)(oh->mesg[idx].native))->u = H5O_BOGUS_VALUE;
/* Mark the message and object header as dirty */
*oh_flags_ptr = TRUE;
oh->mesg[idx].dirty = TRUE;
oh->dirty = TRUE;
} /* end if */
done:
FUNC_LEAVE(ret_value)
} /* end H5O_bogus_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_bogus
*
* Purpose: Create a "bogus" message in an object.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* <koziol@ncsa.uiuc.edu>
* Tuesday, January 21, 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_bogus(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *oh = NULL;
unsigned oh_flags = H5AC__NO_FLAGS_SET;
herr_t ret_value = SUCCEED;
FUNC_ENTER(H5O_bogus, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
/* Verify write access to the file */
if(0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_OHDR, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Get the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Create the "bogus" message */
if(H5O_bogus_oh(ent->file, dxpl_id, oh, &oh_flags) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to update object 'bogus' message")
done:
if(oh && H5AC_unprotect(ent->file, dxpl_id, H5AC_OHDR, ent->header, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE(ret_value)
} /* end H5O_bogus() */
#endif /* H5O_ENABLE_BOGUS */
/*-------------------------------------------------------------------------
* Function: H5O_remove
*
* Purpose: Removes the specified message from the object header.
* If sequence is H5O_ALL (-1) then all messages of the
* specified type are removed. Removing a message causes
* the sequence numbers to change for subsequent messages of
* the same type.
*
* No attempt is made to join adjacent free areas of the
* object header into a single larger free area.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 28 1997
*
* Modifications:
*
* Robb Matzke, 7 Jan 1998
* Does not remove constant messages.
*
* Changed to use IDs for types, instead of type objects, then
* call "real" routine.
* Quincey Koziol
* Feb 14 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_remove(H5O_loc_t *loc, unsigned type_id, int sequence, hbool_t adj_link, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_remove, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" remove routine */
if((ret_value = H5O_remove_real(loc, type, sequence, NULL, NULL, adj_link, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_remove() */
/*-------------------------------------------------------------------------
* Function: H5O_remove_op
*
* Purpose: Removes messages from the object header that a callback
* routine indicates should be removed.
*
* No attempt is made to join adjacent free areas of the
* object header into a single larger free area.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Sep 6 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_remove_op(const H5O_loc_t *loc, unsigned type_id, int sequence,
H5O_operator_t op, void *op_data, hbool_t adj_link, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_remove_op, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" remove routine */
if((ret_value = H5O_remove_real(loc, type, sequence, op, op_data, adj_link, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to remove object header message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_remove_op() */
/*-------------------------------------------------------------------------
* Function: H5O_remove_cb
*
* Purpose: Object header iterator callback routine to remove messages
* of a particular type that match a particular sequence number,
* or all messages if the sequence number is H5O_ALL (-1).
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Sep 6 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_remove_cb(H5O_t *oh, H5O_mesg_t *mesg/*in,out*/,
unsigned sequence, unsigned * oh_flags_ptr, void *_udata/*in,out*/)
{
H5O_iter_ud1_t *udata = (H5O_iter_ud1_t *)_udata; /* Operator user data */
htri_t try_remove = FALSE; /* Whether to try removing a message */
herr_t ret_value = H5O_ITER_CONT; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_remove_cb)
/* check args */
HDassert(mesg);
/* Check for callback routine */
if(udata->op) {
/* Call the iterator callback */
if((try_remove = (udata->op)(mesg->native, sequence, udata->op_data)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "object header message deletion callback failed")
} /* end if */
else {
/* If there's no callback routine, does the sequence # match? */
if((int)sequence == udata->sequence || H5O_ALL == udata->sequence)
try_remove = H5O_ITER_STOP;
} /* end else */
/* Try removing the message, if indicated */
if(try_remove) {
/*
* Keep track of how many times we failed trying to remove constant
* messages.
*/
if(mesg->flags & H5O_FLAG_CONSTANT)
udata->nfailed++;
else {
/* Convert message into a null message */
if(H5O_release_mesg(udata->f, udata->dxpl_id, oh, mesg, TRUE, udata->adj_link) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, H5O_ITER_ERROR, "unable to convert into null message")
/* Indicate that the object header was modified */
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
} /* end else */
/* Break out now, if we've found the correct message */
if(udata->sequence == H5O_FIRST || udata->sequence != H5O_ALL)
HGOTO_DONE(H5O_ITER_STOP)
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_remove_cb() */
/*-------------------------------------------------------------------------
* Function: H5O_remove_real
*
* Purpose: Removes the specified message from the object header.
* If sequence is H5O_ALL (-1) then all messages of the
* specified type are removed. Removing a message causes
* the sequence numbers to change for subsequent messages of
* the same type.
*
* No attempt is made to join adjacent free areas of the
* object header into a single larger free area.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 28 1997
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_remove_real(const H5O_loc_t *loc, const H5O_msg_class_t *type, int sequence,
H5O_operator_t app_op, void *op_data, hbool_t adj_link, hid_t dxpl_id)
{
H5O_iter_ud1_t udata; /* User data for iterator */
H5O_mesg_operator_t op; /* Wrapper for operator */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_remove_real)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(type);
/* Make certain we are allowed to modify the file */
if(0 == (loc->file->intent & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_HEAP, H5E_WRITEERROR, FAIL, "no write intent on file")
/* Set up iterator operator data */
udata.f = loc->file;
udata.dxpl_id = dxpl_id;
udata.sequence = sequence;
udata.nfailed = 0;
udata.op = app_op;
udata.op_data = op_data;
udata.adj_link = adj_link;
/* Iterate over the messages, deleting appropriate one(s) */
op.lib_op = H5O_remove_cb;
if(H5O_iterate_real(loc, type, H5AC_WRITE, TRUE, op, &udata, dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "error iterating over messages")
/* Fail if we tried to remove any constant messages */
if(udata.nfailed)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to remove constant message(s)")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_remove_real() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_msgs
*
* Purpose: Allocate more messages for a header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Nov 21 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_alloc_msgs(H5O_t *oh, size_t min_alloc)
{
size_t old_alloc; /* Old number of messages allocated */
size_t na; /* New number of messages allocated */
H5O_mesg_t *new_mesg; /* Pointer to new message array */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_msgs)
/* check args */
HDassert(oh);
/* Initialize number of messages information */
old_alloc = oh->alloc_nmesgs;
na = oh->alloc_nmesgs + MAX(oh->alloc_nmesgs, min_alloc);
/* Attempt to allocate more memory */
if(NULL == (new_mesg = H5FL_SEQ_REALLOC(H5O_mesg_t, oh->mesg, na)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Update ohdr information */
oh->alloc_nmesgs = na;
oh->mesg = new_mesg;
/* Set new object header info to zeros */
HDmemset(&oh->mesg[old_alloc], 0, (oh->alloc_nmesgs - old_alloc) * sizeof(H5O_mesg_t));
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_msgs() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_null
*
* Purpose: Allocate room for a new message from a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 22 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_alloc_null(H5O_t *oh, unsigned null_idx, const H5O_msg_class_t *new_type,
void *new_native, size_t new_size)
{
H5O_mesg_t *alloc_msg; /* Pointer to null message to allocate out of */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_null)
/* check args */
HDassert(oh);
HDassert(new_type);
HDassert(new_size);
/* Point to null message to allocate out of */
alloc_msg = &oh->mesg[null_idx];
/* Check if there's a need to split the null message */
if(alloc_msg->raw_size > new_size) {
/* Check for producing a gap in the chunk */
if((alloc_msg->raw_size - new_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
size_t gap_size = alloc_msg->raw_size - new_size; /* Size of gap produced */
/* Adjust the size of the null message being eliminated */
alloc_msg->raw_size = new_size;
/* Add the gap to the chunk */
if(H5O_add_gap(oh, alloc_msg->chunkno, null_idx, alloc_msg->raw + alloc_msg->raw_size, gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't insert gap in chunk")
} /* end if */
else {
size_t new_mesg_size = new_size + H5O_SIZEOF_MSGHDR_OH(oh); /* Total size of newly allocated message */
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs) {
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* "Retarget" 'alloc_msg' pointer into newly re-allocated array of messages */
alloc_msg = &oh->mesg[null_idx];
} /* end if */
/* Create new null message, with the tail of the previous null message */
null_msg = &(oh->mesg[oh->nmesgs++]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw = alloc_msg->raw + new_mesg_size;
null_msg->raw_size = alloc_msg->raw_size - new_mesg_size;
null_msg->chunkno = alloc_msg->chunkno;
/* Check for gap in new null message's chunk */
if(oh->chunk[null_msg->chunkno].gap > 0) {
unsigned null_chunkno = null_msg->chunkno; /* Chunk w/gap */
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, null_msg,
((oh->chunk[null_chunkno].image + oh->chunk[null_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[null_chunkno].gap)),
oh->chunk[null_chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, UFAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[null_chunkno].gap = 0;
} /* end if */
/* Set the size of the new "real" message */
alloc_msg->raw_size = new_size;
} /* end else */
} /* end if */
/* Initialize the new message */
alloc_msg->type = new_type;
alloc_msg->dirty = TRUE;
alloc_msg->native = new_native;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_null() */
/*-------------------------------------------------------------------------
*
* Function: H5O_release_mesg
*
* Purpose: Convert a message into a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 22 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_mesg_t *mesg,
hbool_t delete_mesg, hbool_t adj_link)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_release_mesg)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(mesg);
/* Check if we should operate on the message */
if(delete_mesg) {
/* Free any space referred to in the file from this message */
if(H5O_delete_mesg(f, dxpl_id, mesg, adj_link) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
/* Free any native information */
H5O_free_mesg(mesg);
} /* end if */
/* Change message type to nil and zero it */
mesg->type = H5O_MSG_NULL;
HDassert(mesg->raw + mesg->raw_size <= (oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap));
HDmemset(mesg->raw, 0, mesg->raw_size);
/* Clear message flags */
mesg->flags = 0;
/* Indicate that the message was modified */
mesg->dirty = TRUE;
/* Check if chunk has a gap currently */
if(oh->chunk[mesg->chunkno].gap) {
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, mesg,
((oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap)),
oh->chunk[mesg->chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[mesg->chunkno].gap = 0;
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_release_mesg() */
/*-------------------------------------------------------------------------
*
* Function: H5O_move_msgs_forward
*
* Purpose: Move messages toward first chunk
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 17 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_move_msgs_forward(H5O_t *oh)
{
hbool_t packed_msg; /* Flag to indicate that messages were packed */
hbool_t did_packing = FALSE; /* Whether any messages were packed */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_move_msgs_forward)
/* check args */
HDassert(oh);
/* Loop until no messages packed */
/* (Double loop is not very efficient, but it would be some extra work to
* add a list of messages to each chunk -QAK)
*/
do {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned u; /* Local index variable */
/* Reset packed messages flag */
packed_msg = FALSE;
/* Scan through messages for messages that can be moved earlier in chunks */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
if(H5O_NULL_ID == curr_msg->type->id) {
H5O_chunk_t *chunk; /* Pointer to chunk that null message is in */
/* Check if null message is not last in chunk */
chunk = &(oh->chunk[curr_msg->chunkno]);
if((curr_msg->raw + curr_msg->raw_size)
!= ((chunk->image + chunk->size) - (H5O_SIZEOF_CHKSUM_OH(oh) + chunk->gap))) {
H5O_mesg_t *nonnull_msg; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Loop over messages again, looking for the message in the chunk after the null message */
for(v = 0, nonnull_msg = &oh->mesg[0]; v < oh->nmesgs; v++, nonnull_msg++) {
/* Locate message that is immediately after the null message */
if((curr_msg->chunkno == nonnull_msg->chunkno) &&
((curr_msg->raw + curr_msg->raw_size) == (nonnull_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)))) {
/* Don't swap messages if the second message is also a null message */
/* (We'll merge them together later, in another routine) */
if(H5O_NULL_ID != nonnull_msg->type->id) {
/* Copy raw data for non-null message to new location */
HDmemmove(curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh),
nonnull_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Adjust non-null message's offset in chunk */
nonnull_msg->raw = curr_msg->raw;
/* Adjust null message's offset in chunk */
curr_msg->raw = nonnull_msg->raw +
nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
/* Mark null message dirty */
/* (since we need to re-encode its message header) */
/* (also, marking this message dirty means we
* don't have to mark chunk as dirty)
*/
curr_msg->dirty = TRUE;
/* Set the flag to indicate that the null message
* was packed - if its not at the end its chunk,
* we'll move it again on the next pass.
*/
packed_msg = TRUE;
} /* end if */
/* Break out of loop */
break;
} /* end if */
} /* end for */
/* Should have been message after null message */
HDassert(v < oh->nmesgs);
} /* end if */
} /* end if */
else {
H5O_mesg_t *null_msg; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Loop over messages again, looking for large enough null message in earlier chunk */
for(v = 0, null_msg = &oh->mesg[0]; v < oh->nmesgs; v++, null_msg++) {
if(H5O_NULL_ID == null_msg->type->id && curr_msg->chunkno > null_msg->chunkno
&& curr_msg->raw_size <= null_msg->raw_size) {
unsigned old_chunkno; /* Old message information */
uint8_t *old_raw;
/* Keep old information about non-null message */
old_chunkno = curr_msg->chunkno;
old_raw = curr_msg->raw;
/* Copy raw data for non-null message to new chunk */
HDmemcpy(null_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Mark null message's chunk as dirty, since the raw data image changed */
oh->chunk[null_msg->chunkno].dirty = TRUE;
/* Point non-null message at null message's space */
curr_msg->chunkno = null_msg->chunkno;
curr_msg->raw = null_msg->raw;
/* Change information for null message */
if(curr_msg->raw_size == null_msg->raw_size) {
/* Point null message at old non-null space */
/* (Instead of freeing it and allocating new message) */
null_msg->chunkno = old_chunkno;
null_msg->raw = old_raw;
/* Mark null message dirty */
null_msg->dirty = TRUE;
} /* end if */
else {
unsigned new_null_msg; /* Message index for new null message */
/* Check if null message is large enough to still exist */
if((null_msg->raw_size - curr_msg->raw_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
size_t gap_size = null_msg->raw_size - curr_msg->raw_size; /* Size of gap produced */
/* Adjust the size of the null message being eliminated */
null_msg->raw_size = curr_msg->raw_size;
/* Add the gap to the chunk */
if(H5O_add_gap(oh, null_msg->chunkno, v, null_msg->raw + null_msg->raw_size, gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't insert gap in chunk")
/* Re-use message # for new null message taking place of non-null message */
new_null_msg = v;
} /* end if */
else {
/* Adjust null message's size & offset */
null_msg->raw += curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
null_msg->raw_size -= curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
/* Mark null message dirty */
null_msg->dirty = TRUE;
/* Create new null message for previous location of non-null message */
if(oh->nmesgs >= oh->alloc_nmesgs) {
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* "Retarget" 'curr_msg' pointer into newly re-allocated array of messages */
curr_msg = &oh->mesg[u];
} /* end if */
/* Get message # for new null message */
new_null_msg = oh->nmesgs++;
} /* end else */
/* Initialize new null message to take over non-null message's location */
oh->mesg[new_null_msg].type = H5O_MSG_NULL;
oh->mesg[new_null_msg].dirty = TRUE;
oh->mesg[new_null_msg].native = NULL;
oh->mesg[new_null_msg].raw = old_raw;
oh->mesg[new_null_msg].raw_size = curr_msg->raw_size;
oh->mesg[new_null_msg].chunkno = old_chunkno;
/* Check for gap in new null message's chunk */
if(oh->chunk[old_chunkno].gap > 0) {
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, &oh->mesg[new_null_msg],
((oh->chunk[old_chunkno].image + oh->chunk[old_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[old_chunkno].gap)),
oh->chunk[old_chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[old_chunkno].gap = 0;
} /* end if */
} /* end else */
/* Indicate that we packed messages */
packed_msg = TRUE;
/* Break out of loop */
/* (If it's possible to move message to even earlier chunk
* we'll get it on the next pass - QAK)
*/
break;
} /* end if */
} /* end for */
/* If we packed messages, get out of loop and start over */
/* (Don't know if this has any benefit one way or the other -QAK) */
if(packed_msg)
break;
} /* end else */
} /* end for */
/* If we did any packing, remember that */
if(packed_msg)
did_packing = TRUE;
} while(packed_msg);
/* Set return value */
ret_value = did_packing;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_move_msgs_forward() */
/*-------------------------------------------------------------------------
*
* Function: H5O_merge_null
*
* Purpose: Merge neighboring null messages in an object header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 10 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_merge_null(H5O_t *oh)
{
hbool_t merged_msg; /* Flag to indicate that messages were merged */
hbool_t did_merging = FALSE; /* Whether any messages were merged */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_merge_null)
/* check args */
HDassert(oh != NULL);
/* Loop until no messages merged */
/* (Double loop is not very efficient, but it would be some extra work to add
* a list of messages to each chunk -QAK)
*/
do {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned u; /* Local index variable */
/* Reset merged messages flag */
merged_msg = FALSE;
/* Scan messages for adjacent null messages & merge them */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
if(H5O_NULL_ID == curr_msg->type->id) {
H5O_mesg_t *curr_msg2; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Should be no gaps in chunk with null message */
HDassert(oh->chunk[curr_msg->chunkno].gap == 0);
/* Loop over messages again, looking for null message in same chunk */
for(v = 0, curr_msg2 = &oh->mesg[0]; v < oh->nmesgs; v++, curr_msg2++) {
if(u != v && H5O_NULL_ID == curr_msg2->type->id && curr_msg->chunkno == curr_msg2->chunkno) {
/* Check for second message after first message */
if((curr_msg->raw + curr_msg->raw_size) == (curr_msg2->raw - H5O_SIZEOF_MSGHDR_OH(oh))) {
/* Extend first null message length to cover second null message */
curr_msg->raw_size += (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
/* Message has been merged */
merged_msg = TRUE;
} /* end if */
/* Check for second message before first message */
else if((curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)) == (curr_msg2->raw + curr_msg2->raw_size)) {
/* Adjust first message address and extend length to cover second message */
curr_msg->raw -= (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
curr_msg->raw_size += (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
/* Message has been merged */
merged_msg = TRUE;
} /* end if */
/* Second message has been merged, delete it */
if(merged_msg) {
/* Release any information/memory for second message */
H5O_free_mesg(curr_msg2);
/* Mark first message as dirty */
curr_msg->dirty = TRUE;
/* Remove second message from list of messages */
if(v < (oh->nmesgs - 1))
HDmemmove(&oh->mesg[v], &oh->mesg[v + 1], ((oh->nmesgs - 1) - v) * sizeof(H5O_mesg_t));
/* Decrement # of messages */
/* (Don't bother reducing size of message array for now -QAK) */
oh->nmesgs--;
/* Get out of loop */
break;
} /* end if */
} /* end if */
} /* end for */
/* Get out of loop if we merged messages */
if(merged_msg)
break;
} /* end if */
} /* end for */
/* If we did any merging, remember that */
if(merged_msg)
did_merging = TRUE;
} while(merged_msg);
/* Set return value */
ret_value = did_merging;
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_merge_null() */
/*-------------------------------------------------------------------------
*
* Function: H5O_remove_empty_chunks
*
* Purpose: Attempt to eliminate empty chunks from object header.
*
* This examines a chunk to see if it's empty
* and removes it (and the continuation message that points to it)
* from the object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 17 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
{
hbool_t deleted_chunk; /* Whether to a chunk was deleted */
hbool_t did_deleting = FALSE; /* Whether any chunks were deleted */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_remove_empty_chunks)
/* check args */
HDassert(oh != NULL);
/* Loop until no chunks are freed */
do {
H5O_mesg_t *null_msg; /* Pointer to null message found */
H5O_mesg_t *cont_msg; /* Pointer to continuation message found */
unsigned u, v; /* Local index variables */
/* Reset 'chunk deleted' flag */
deleted_chunk = FALSE;
/* Scan messages for null messages that fill an entire chunk */
for(u = 0, null_msg = &oh->mesg[0]; u < oh->nmesgs; u++, null_msg++) {
/* If a null message takes up an entire object header chunk (and
* its not the "base" chunk), delete that chunk from object header
*/
if(H5O_NULL_ID == null_msg->type->id && null_msg->chunkno > 0 &&
(H5O_SIZEOF_MSGHDR_OH(oh) + null_msg->raw_size)
== (oh->chunk[null_msg->chunkno].size - H5O_SIZEOF_CHKHDR_OH(oh))) {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned null_msg_no; /* Message # for null message */
unsigned deleted_chunkno; /* Chunk # to delete */
/* Locate continuation message that points to chunk */
for(v = 0, cont_msg = &oh->mesg[0]; v < oh->nmesgs; v++, cont_msg++) {
if(H5O_CONT_ID == cont_msg->type->id) {
/* Decode current continuation message if necessary */
if(NULL == cont_msg->native) {
HDassert(H5O_MSG_CONT->decode);
cont_msg->native = (H5O_MSG_CONT->decode)(f, dxpl_id, cont_msg->raw);
if(NULL == cont_msg->native)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode message")
} /* end if */
/* Check for correct chunk to delete */
if(oh->chunk[null_msg->chunkno].addr == ((H5O_cont_t *)(cont_msg->native))->addr)
break;
} /* end if */
} /* end for */
/* Must be a continuation message that points to chunk containing null message */
HDassert(v < oh->nmesgs);
HDassert(cont_msg);
/* Initialize information about null message */
null_msg_no = u;
deleted_chunkno = null_msg->chunkno;
/* Convert continuation message into a null message */
if(H5O_release_mesg(f, dxpl_id, oh, cont_msg, TRUE, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to convert into null message")
/*
* Remove chunk from object header's data structure
*/
/* Free memory for chunk image */
H5FL_BLK_FREE(chunk_image, oh->chunk[null_msg->chunkno].image);
/* Remove chunk from list of chunks */
if(null_msg->chunkno < (oh->nchunks - 1))
HDmemmove(&oh->chunk[null_msg->chunkno], &oh->chunk[null_msg->chunkno + 1], ((oh->nchunks - 1) - null_msg->chunkno) * sizeof(H5O_chunk_t));
/* Decrement # of chunks */
/* (Don't bother reducing size of chunk array for now -QAK) */
oh->nchunks--;
/*
* Delete null message (in empty chunk that was be freed) from list of messages
*/
/* Release any information/memory for message */
H5O_free_mesg(null_msg);
/* Remove null message from list of messages */
if(null_msg_no < (oh->nmesgs - 1))
HDmemmove(&oh->mesg[null_msg_no], &oh->mesg[null_msg_no + 1], ((oh->nmesgs - 1) - null_msg_no) * sizeof(H5O_mesg_t));
/* Decrement # of messages */
/* (Don't bother reducing size of message array for now -QAK) */
oh->nmesgs--;
/* Adjust chunk # for messages in chunks after deleted chunk */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
HDassert(curr_msg->chunkno != deleted_chunkno);
if(curr_msg->chunkno > deleted_chunkno)
curr_msg->chunkno--;
} /* end for */
/* Found chunk to delete */
deleted_chunk = TRUE;
break;
} /* end if */
} /* end for */
/* If we deleted any chunks, remember that */
if(deleted_chunk)
did_deleting = TRUE;
} while(deleted_chunk);
/* Set return value */
ret_value = did_deleting;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_remove_empty_chunks() */
/*-------------------------------------------------------------------------
*
* Function: H5O_condense_header
*
* Purpose: Attempt to eliminate empty chunks from object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 4 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
{
hbool_t rescan_header; /* Whether to rescan header */
htri_t result; /* Result from packing/merging/etc */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_condense_header)
/* check args */
HDassert(oh != NULL);
/* Loop until no changed to the object header messages & chunks */
do {
/* Reset 'rescan chunks' flag */
rescan_header = FALSE;
/* Scan for messages that can be moved earlier in chunks */
result = H5O_move_msgs_forward(oh);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't move header messages forward")
if(result > 0)
rescan_header = TRUE;
/* Scan for adjacent null messages & merge them */
result = H5O_merge_null(oh);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't pack null header messages")
if(result > 0)
rescan_header = TRUE;
/* Scan for empty chunks to remove */
result = H5O_remove_empty_chunks(f, oh, dxpl_id);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't remove empty chunk")
if(result > 0)
rescan_header = TRUE;
} while(rescan_header);
#ifdef H5O_DEBUG
H5O_assert(oh);
#endif /* H5O_DEBUG */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_condense_header() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_extend_chunk
*
* Purpose: Attempt to extend a chunk that is allocated on disk.
*
* If the extension is successful, and if the last message
* of the chunk is the null message, then that message will
* be extended with the chunk. Otherwise a new null message
* is created.
*
* f is the file in which the chunk will be written. It is
* included to ensure that there is enough space to extend
* this chunk.
*
* Return: TRUE: The chunk has been extended, and *msg_idx
* contains the message index for null message
* which is large enough to hold size bytes.
*
* FALSE: The chunk cannot be extended, and *msg_idx
* is undefined.
*
* FAIL: Some internal error has been detected.
*
* Programmer: John Mainzer -- 8/16/05
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_alloc_extend_chunk(H5F_t *f,
H5O_t *oh,
unsigned chunkno,
size_t size,
unsigned * msg_idx)
{
size_t delta; /* Change in chunk's size */
size_t aligned_size = H5O_ALIGN_OH(oh, size);
uint8_t *old_image; /* Old address of chunk's image in memory */
size_t old_size; /* Old size of chunk */
htri_t tri_result; /* Result from checking if chunk can be extended */
int extend_msg = -1;/* Index of null message to extend */
unsigned u; /* Local index variable */
htri_t ret_value = TRUE; /* return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_extend_chunk)
/* check args */
HDassert(f != NULL);
HDassert(oh != NULL);
HDassert(chunkno < oh->nchunks);
HDassert(size > 0);
HDassert(msg_idx != NULL);
HDassert(H5F_addr_defined(oh->chunk[chunkno].addr));
/* Test to see if the specified chunk ends with a null messages.
* If successful, set the index of the the null message in extend_msg.
*/
for(u = 0; u < oh->nmesgs; u++) {
/* Check for null message at end of proper chunk */
/* (account for possible checksum at end of chunk) */
if(oh->mesg[u].chunkno == chunkno && H5O_NULL_ID == oh->mesg[u].type->id &&
((oh->mesg[u].raw + oh->mesg[u].raw_size)
== ((oh->chunk[chunkno].image + oh->chunk[chunkno].size) -
(oh->chunk[chunkno].gap + H5O_SIZEOF_CHKSUM_OH(oh))))) {
extend_msg = u;
break;
} /* end if */
} /* end for */
/* If we can extend an existing null message, adjust the delta appropriately */
if(extend_msg >= 0) {
HDassert(oh->chunk[chunkno].gap == 0);
delta = aligned_size - oh->mesg[extend_msg].raw_size;
} /* end if */
else
delta = (aligned_size + H5O_SIZEOF_MSGHDR_OH(oh)) - oh->chunk[chunkno].gap;
delta = H5O_ALIGN_OH(oh, delta);
/* Determine whether the chunk can be extended */
tri_result = H5MF_can_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr,
(hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta);
if(tri_result == FALSE) /* can't extend -- we are done */
HGOTO_DONE(FALSE)
else if(tri_result < 0) /* error */
HGOTO_ERROR(H5E_RESOURCE, H5E_SYSTEM, FAIL, "can't tell if we can extend chunk")
/* If we get this far, we should be able to extend the chunk */
if(H5MF_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr, (hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta) < 0 )
HGOTO_ERROR(H5E_RESOURCE, H5E_SYSTEM, FAIL, "can't extend chunk")
/* If we can extend an existing null message, take care of that */
if(extend_msg >= 0) {
/* Adjust message size of existing null message */
oh->mesg[extend_msg].dirty = TRUE;
oh->mesg[extend_msg].raw_size += delta;
} /* end if */
/* Create new null message for end of chunk */
else {
/* Create a new null message */
if(oh->nmesgs >= oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* Set extension message */
extend_msg = oh->nmesgs++;
/* Initialize new null message */
oh->mesg[extend_msg].type = H5O_MSG_NULL;
oh->mesg[extend_msg].dirty = TRUE;
oh->mesg[extend_msg].native = NULL;
oh->mesg[extend_msg].raw = ((oh->chunk[chunkno].image + oh->chunk[chunkno].size)
- (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[chunkno].gap))
+ H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[extend_msg].raw_size = (delta + oh->chunk[chunkno].gap) - H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[extend_msg].chunkno = chunkno;
} /* end else */
/* Allocate more memory space for chunk's image */
old_image = oh->chunk[chunkno].image;
old_size = oh->chunk[chunkno].size;
oh->chunk[chunkno].size += delta;
oh->chunk[chunkno].image = H5FL_BLK_REALLOC(chunk_image, old_image, oh->chunk[chunkno].size);
oh->chunk[chunkno].gap = 0;
oh->chunk[chunkno].dirty = TRUE;
if(NULL == oh->chunk[chunkno].image)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Wipe new space for chunk */
HDmemset(oh->chunk[chunkno].image + old_size, 0, oh->chunk[chunkno].size - old_size);
/* Spin through existing messages, adjusting them */
for(u = 0; u < oh->nmesgs; u++) {
/* Adjust raw addresses for messages in this chunk to reflect new 'image' address */
if(oh->mesg[u].chunkno == chunkno)
oh->mesg[u].raw = oh->chunk[chunkno].image + (oh->mesg[u].raw - old_image);
/* Find continuation message which points to this chunk and adjust chunk's size */
/* (Chunk 0 doesn't have a continuation message that points to it and
* it's size is directly encoded in the object header) */
if(chunkno > 0 && (H5O_CONT_ID == oh->mesg[u].type->id) &&
(((H5O_cont_t *)(oh->mesg[u].native))->chunkno == chunkno)) {
/* Adjust size of continuation message */
HDassert(((H5O_cont_t *)(oh->mesg[u].native))->size == old_size);
((H5O_cont_t *)(oh->mesg[u].native))->size = oh->chunk[chunkno].size;
/* Flag continuation message as dirty */
oh->mesg[u].dirty = TRUE;
} /* end if */
} /* end for */
/* Set return value */
*msg_idx = extend_msg;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_extend_chunk() */
/*-------------------------------------------------------------------------
* Function: H5O_alloc_new_chunk
*
* Purpose: Allocates a new chunk for the object header, including
* file space.
*
* One of the other chunks will get an object continuation
* message. If there isn't room in any other chunk for the
* object continuation message, then some message from
* another chunk is moved into this chunk to make room.
*
* SIZE need not be aligned.
*
* Return: Success: Index number of the null message for the
* new chunk. The null message will be at
* least SIZE bytes not counting the message
* ID or size fields.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 7 1997
*
*-------------------------------------------------------------------------
*/
static unsigned
H5O_alloc_new_chunk(H5F_t *f,
hid_t dxpl_id,
H5O_t *oh,
size_t size)
{
size_t cont_size; /*continuation message size */
int found_null = (-1); /*best fit null message */
int found_attr = (-1); /*best fit attribute message */
int found_link = (-1); /*best fit link message */
int found_other = (-1); /*best fit other message */
unsigned idx; /*message number */
uint8_t *p = NULL; /*ptr into new chunk */
H5O_cont_t *cont = NULL; /*native continuation message */
unsigned chunkno; /* Chunk allocated */
haddr_t new_chunk_addr;
unsigned u; /* Local index variable */
unsigned ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_new_chunk)
/* check args */
HDassert(oh);
HDassert(size > 0);
size = H5O_ALIGN_OH(oh, size);
/*
* Find the smallest null message that will hold an object
* continuation message. Failing that, find the smallest message
* that could be moved to make room for the continuation message.
*
* Don't ever move continuation message from one chunk to another.
* Prioritize link messages moving to later chunks, instead of
* more "important" messages.
* Avoid moving attributes when possible to preserve their
* ordering (although ordering is *not* guaranteed!).
*
*/
cont_size = H5O_ALIGN_OH(oh, H5F_SIZEOF_ADDR(f) + H5F_SIZEOF_SIZE(f));
for(u = 0; u < oh->nmesgs; u++) {
int msg_id = oh->mesg[u].type->id; /* Temp. copy of message type ID */
if(H5O_NULL_ID == msg_id) {
if(cont_size == oh->mesg[u].raw_size) {
found_null = u;
break;
} else if(oh->mesg[u].raw_size >= cont_size &&
(found_null < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_null].raw_size)) {
found_null = u;
}
} else if(H5O_CONT_ID == msg_id) {
/*don't consider continuation messages */
} else if(H5O_ATTR_ID == msg_id) {
if(oh->mesg[u].raw_size >= cont_size &&
(found_attr < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_attr].raw_size))
found_attr = u;
} else if(H5O_LINK_ID == msg_id) {
if(oh->mesg[u].raw_size >= cont_size &&
(found_link < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_link].raw_size))
found_link = u;
} else {
if(oh->mesg[u].raw_size >= cont_size &&
(found_other < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_other].raw_size))
found_other = u;
} /* end else */
} /* end for */
HDassert(found_null >= 0 || found_attr >= 0 || found_link >= 0 || found_other >= 0);
/*
* If we must move some other message to make room for the null
* message, then make sure the new chunk has enough room for that
* other message.
*
* Move link messages first, then other messages, and attributes
* only as a last resort.
*
*/
if(found_null < 0) {
if(found_link >= 0)
found_other = found_link;
if(found_other < 0)
found_other = found_attr;
HDassert(found_other >= 0);
size += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
} /* end if */
/*
* The total chunk size must include enough space for the checksum
* on the chunk and the continuation chunk magic #. (which are only present
* in later versions of the object header)
*/
size += H5O_SIZEOF_CHKHDR_OH(oh);
/*
* The total chunk size must include the requested space plus enough
* for the message header. This must be at least some minimum and a
* multiple of the alignment size.
*/
size = MAX(H5O_MIN_SIZE, size + H5O_SIZEOF_MSGHDR_OH(oh));
HDassert(size == H5O_ALIGN_OH(oh, size));
/* allocate space in file to hold the new chunk */
new_chunk_addr = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id, (hsize_t)size);
if(HADDR_UNDEF == new_chunk_addr)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "unable to allocate space for new chunk")
/*
* Create the new chunk giving it a file address.
*/
if(oh->nchunks >= oh->alloc_nchunks) {
unsigned na = MAX(H5O_NCHUNKS, oh->alloc_nchunks * 2); /* Double # of chunks allocated */
H5O_chunk_t *x = H5FL_SEQ_REALLOC(H5O_chunk_t, oh->chunk, (size_t)na);
if(!x)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
oh->alloc_nchunks = na;
oh->chunk = x;
} /* end if */
chunkno = oh->nchunks++;
oh->chunk[chunkno].dirty = TRUE;
oh->chunk[chunkno].addr = new_chunk_addr;
oh->chunk[chunkno].size = size;
oh->chunk[chunkno].gap = 0;
if(NULL == (oh->chunk[chunkno].image = p = H5FL_BLK_CALLOC(chunk_image, size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
/* If this is a later version of the object header format, put the magic
* # at the beginning of the chunk image.
*/
if(oh->version > H5O_VERSION_1) {
HDmemcpy(p, H5O_CHK_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
p += H5O_SIZEOF_MAGIC;
} /* end if */
/*
* Make sure we have enough space for all possible new messages
* that could be generated below.
*/
if(oh->nmesgs + 3 > oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)3) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* Move message (that will be replaced with continuation message)
* to new chunk, if necessary.
*/
if(found_null < 0) {
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Create null message for space that message to copy currently occupies */
found_null = oh->nmesgs++;
null_msg = &(oh->mesg[found_null]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw = oh->mesg[found_other].raw;
null_msg->raw_size = oh->mesg[found_other].raw_size;
null_msg->chunkno = oh->mesg[found_other].chunkno;
/* Copy the message to move to its new location */
/* (Chunk is already dirty, no need to mark it) */
HDmemcpy(p, oh->mesg[found_other].raw - H5O_SIZEOF_MSGHDR_OH(oh),
oh->mesg[found_other].raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Switch message to point to new location */
oh->mesg[found_other].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[found_other].chunkno = chunkno;
/* Account for copied message in new chunk */
p += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
size -= H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
} /* end if */
HDassert(found_null >= 0);
/* Create null message for [rest of] space in new chunk */
/* (account for chunk's magic # & checksum) */
idx = oh->nmesgs++;
oh->mesg[idx].type = H5O_MSG_NULL;
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->mesg[idx].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[idx].raw_size = size -
(H5O_SIZEOF_CHKHDR_OH(oh) + H5O_SIZEOF_MSGHDR_OH(oh));
oh->mesg[idx].chunkno = chunkno;
/* Initialize the continuation information */
if(NULL == (cont = H5FL_MALLOC(H5O_cont_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
cont->addr = oh->chunk[chunkno].addr;
cont->size = oh->chunk[chunkno].size;
cont->chunkno = chunkno;
/* Split the null message and point at continuation message */
if(H5O_alloc_null(oh, (unsigned)found_null, H5O_MSG_CONT, cont, cont_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Set return value */
ret_value = idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_new_chunk() */
/*-------------------------------------------------------------------------
* Function: H5O_eliminate_gap
*
* Purpose: Eliminate a gap in a chunk with a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 17 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg, uint8_t *gap_loc, size_t gap_size)
{
uint8_t *move_start, *move_end; /* Pointers to area of messages to move */
hbool_t null_before_gap; /* Flag whether the null message is before the gap or not */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_eliminate_gap)
/* check args */
HDassert(oh);
HDassert(oh->version > H5O_VERSION_1);
HDassert(mesg);
HDassert(gap_loc);
HDassert(gap_size);
/* Check if the null message is before or after the gap produced */
null_before_gap = (hbool_t)(mesg->raw < gap_loc);
/* Set up information about region of messages to move */
if(null_before_gap) {
move_start = mesg->raw + mesg->raw_size;
move_end = gap_loc;
} /* end if */
else {
move_start = gap_loc + gap_size;
move_end = mesg->raw - H5O_SIZEOF_MSGHDR_OH(oh);
} /* end else */
/* Check for messages between null message and gap */
if(move_end > move_start) {
unsigned u; /* Local index variable */
/* Look for messages that need to move, to adjust raw pointers in chunk */
for(u = 0; u < oh->nmesgs; u++) {
uint8_t *msg_start; /* Start of encoded message in chunk */
msg_start = oh->mesg[u].raw - H5O_SIZEOF_MSGHDR_OH(oh);
if(oh->mesg[u].chunkno == mesg->chunkno
&& (msg_start >= move_start && msg_start < move_end)) {
/* Move message's raw pointer in appropriate direction */
if(null_before_gap)
oh->mesg[u].raw += gap_size;
else
oh->mesg[u].raw -= gap_size;
} /* end if */
} /* end for */
/* Slide raw message info in chunk image */
if(null_before_gap)
/* Slide messages down */
HDmemmove(move_start + gap_size, move_start, (size_t)(move_end - move_start));
else {
/* Slide messages up */
HDmemmove(move_start - gap_size, move_start, (size_t)(move_end - move_start));
/* Adjust start of null message */
mesg->raw -= gap_size;
} /* end else */
} /* end if */
/* Zero out addition to null message */
HDmemset(mesg->raw + mesg->raw_size, 0, gap_size);
/* Adjust size of null message */
mesg->raw_size += gap_size;
/* Mark null message as dirty */
mesg->dirty = TRUE;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5O_eliminate_gap() */
/*-------------------------------------------------------------------------
* Function: H5O_add_gap
*
* Purpose: Add a gap to a chunk
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 17 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
uint8_t *new_gap_loc, size_t new_gap_size)
{
hbool_t merged_with_null; /* Whether the gap was merged with a null message */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_add_gap)
/* check args */
HDassert(oh);
HDassert(oh->version > H5O_VERSION_1);
HDassert(new_gap_loc);
HDassert(new_gap_size);
/* Check for existing null message in chunk */
merged_with_null = FALSE;
for(u = 0; u < oh->nmesgs && !merged_with_null; u++) {
/* Find a null message in the chunk with the new gap */
/* (a null message that's not the one we are eliminating) */
if(H5O_NULL_ID == oh->mesg[u].type->id && oh->mesg[u].chunkno == chunkno
&& u != idx) {
/* Sanity check - chunks with null messages shouldn't have a gap */
HDassert(oh->chunk[chunkno].gap == 0);
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, &oh->mesg[u], new_gap_loc, new_gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't eliminate gap in chunk")
/* Set flag to indicate that the gap was handled */
merged_with_null = TRUE;
} /* end if */
} /* end for */
/* If we couldn't find a null message in the chunk, move the gap to the end */
if(!merged_with_null) {
/* Adjust message offsets after new gap forward in chunk */
for(u = 0; u < oh->nmesgs; u++)
if(oh->mesg[u].chunkno == chunkno && oh->mesg[u].raw > new_gap_loc)
oh->mesg[u].raw -= new_gap_size;
/* Slide raw message info forward in chunk image */
HDmemmove(new_gap_loc, new_gap_loc + new_gap_size,
(size_t)((oh->chunk[chunkno].image + (oh->chunk[chunkno].size - H5O_SIZEOF_CHKSUM_OH(oh))) - (new_gap_loc + new_gap_size)));
/* Add existing gap size to new gap size */
new_gap_size += oh->chunk[chunkno].gap;
/* Merging with existing gap will allow for a new null message */
if(new_gap_size >= (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* Increment new gap size */
oh->chunk[chunkno].gap += new_gap_size;
/* Create new null message, with the tail of the previous null message */
null_msg = &(oh->mesg[oh->nmesgs++]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw_size = new_gap_size - H5O_SIZEOF_MSGHDR_OH(oh);
null_msg->raw = (oh->chunk[chunkno].image + oh->chunk[chunkno].size)
- (H5O_SIZEOF_CHKSUM_OH(oh) + null_msg->raw_size);
null_msg->chunkno = chunkno;
/* Zero out new null message's raw data */
if(null_msg->raw_size)
HDmemset(null_msg->raw, 0, null_msg->raw_size);
/* Reset size of gap in chunk */
oh->chunk[chunkno].gap = 0;
} /* end if */
else
oh->chunk[chunkno].gap = new_gap_size;
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_add_gap() */
/*-------------------------------------------------------------------------
* Function: H5O_alloc
*
* Purpose: Allocate enough space in the object header for this message.
*
* Return: Success: Index of message
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
static unsigned
H5O_alloc(H5F_t *f,
hid_t dxpl_id,
H5O_t *oh,
const H5O_msg_class_t *type,
size_t size,
unsigned * oh_flags_ptr)
{
size_t aligned_size = H5O_ALIGN_OH(oh, size);
unsigned idx; /* Index of message which fits allocation */
unsigned ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc)
/* check args */
HDassert(oh);
HDassert(type);
HDassert(oh_flags_ptr);
/* look for a null message which is large enough */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_NULL_ID == oh->mesg[idx].type->id && oh->mesg[idx].raw_size >= aligned_size)
break;
/* if we didn't find one, then allocate more header space */
if(idx >= oh->nmesgs) {
unsigned chunkno;
/* check to see if we can extend one of the chunks. If we can,
* do so. Otherwise, we will have to allocate a new chunk.
*
* Note that in this new version of this function, all chunks
* must have file space allocated to them.
*/
for(chunkno = 0; chunkno < oh->nchunks; chunkno++) {
htri_t tri_result;
HDassert(H5F_addr_defined(oh->chunk[chunkno].addr));
tri_result = H5O_alloc_extend_chunk(f, oh, chunkno, size, &idx);
if(tri_result == TRUE)
break;
else if(tri_result == FALSE)
idx = UFAIL;
else
HGOTO_ERROR(H5E_OHDR, H5E_SYSTEM, UFAIL, "H5O_alloc_extend_chunk failed unexpectedly")
} /* end for */
/* If idx is still UFAIL, we were not able to extend a chunk,
* create a new one.
*/
if(idx == UFAIL)
if((idx = H5O_alloc_new_chunk(f, dxpl_id, oh, size)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_NOSPACE, UFAIL, "unable to create a new object header data chunk")
} /* end if */
/* Split the null message and point at continuation message */
if(H5O_alloc_null(oh, idx, type, NULL, aligned_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Mark the object header as modified */
*oh_flags_ptr |= H5AC__DIRTIED_FLAG;
#ifdef H5O_DEBUG
H5O_assert(oh);
#endif /* H5O_DEBUG */
/* Set return value */
ret_value = idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc() */
/*-------------------------------------------------------------------------
* Function: H5O_raw_size
*
* Purpose: Call the 'raw_size' method for a
* particular class of object header.
*
* Return: Size of message on success, 0 on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Feb 13 2003
*
*-------------------------------------------------------------------------
*/
size_t
H5O_raw_size(unsigned type_id, const H5F_t *f, const void *mesg)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
size_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_raw_size, 0)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->raw_size);
HDassert(f);
HDassert(mesg);
/* Compute the raw data size for the mesg */
if((ret_value = (type->raw_size)(f, mesg)) == 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOUNT, 0, "unable to determine size of message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_raw_size() */
/*-------------------------------------------------------------------------
* Function: H5O_mesg_size
*
* Purpose: Calculate the final size of an encoded message in an object
* header.
*
* Note: This routine assumes that the message size will be used in the
* creation of a new object header.
*
* Return: Size of message on success, 0 on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Sep 6 2005
*
*-------------------------------------------------------------------------
*/
size_t
H5O_mesg_size(unsigned type_id, const H5F_t *f, const void *mesg, size_t extra_raw)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
size_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_mesg_size, 0)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->raw_size);
HDassert(f);
HDassert(mesg);
/* Compute the raw data size for the mesg */
if((ret_value = (type->raw_size)(f, mesg)) == 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOUNT, 0, "unable to determine size of message")
/* Add in "extra" raw space */
ret_value += extra_raw;
/* Adjust size for alignment, if necessary */
ret_value = H5O_ALIGN_F(f, ret_value);
/* Add space for message header */
ret_value += H5O_SIZEOF_MSGHDR_F(f);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_mesg_size() */
/*-------------------------------------------------------------------------
* Function: H5O_get_share
*
* Purpose: Call the 'get_share' method for a
* particular class of object header.
*
* Return: Success: Non-negative, and SHARE describes the shared
* object.
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 2 2003
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_get_share(unsigned type_id, H5F_t *f, const void *mesg, H5O_shared_t *share)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_get_share,FAIL)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->get_share);
HDassert(f);
HDassert(mesg);
HDassert(share);
/* Get shared data for the mesg */
if((ret_value = (type->get_share)(f, mesg, share)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, FAIL, "unable to retrieve shared message information")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_share() */
/*-------------------------------------------------------------------------
* Function: H5O_is_shared
*
* Purpose: Call the 'is_shared' method for a
* particular class of object header.
*
* Return: Object is shared: TRUE
* Object is not shared: FALSE
*
* Programmer: James Laird
* jlaird@ncsa.uiuc.edu
* April 5 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
htri_t
H5O_is_shared(unsigned type_id, const void *mesg)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
htri_t ret_value;
FUNC_ENTER_NOAPI_NOFUNC(H5O_is_shared)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(mesg);
HDassert(type_id != H5O_SHARED_ID); /* JAMES: check for this mistake elsewhere, too */
/* If there is no is_shared function, then obviously it's not a shared message! */
if( !(type->is_shared))
ret_value = FALSE;
else
ret_value = (type->is_shared)(mesg);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_is_shared() */
/*-------------------------------------------------------------------------
* Function: H5O_set_share
*
* Purpose: Set the shared information for an object header message.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* jlaird@hdfgroup.org
* November 1 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_set_share(H5F_t *f, hid_t dxpl_id, H5O_shared_t *share,
unsigned type_id, void *mesg)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_set_share,FAIL)
/* Check args */
HDassert(f);
HDassert(share);
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->set_share);
HDassert(mesg);
HDassert(share->flags != H5O_NOT_SHARED);
/* Set this message as the shared message for the message, wiping out
* any information that was there before
*/
if((ret_value = (type->set_share)(f, mesg, share)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "unable to set shared message information")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_set_share() */
/*-------------------------------------------------------------------------
* Function: H5O_reset_share
*
* Purpose: Reset the shared information for an object header message.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* jlaird@hdfgroup.org
* Oct 17 2006
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_reset_share(H5F_t *f, unsigned type_id, void *mesg)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
H5O_shared_t sh_mesg; /* Shared message */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_reset_share,FAIL)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->set_share);
HDassert(mesg);
/* Initialize the shared message to zero. */
HDmemset(&sh_mesg, 0, sizeof(H5O_shared_t));
/* Set this message as the shared message for the message, wiping out
* any information that was there before
*/
if((ret_value = (type->set_share)(f, mesg, &sh_mesg)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTSET, FAIL, "unable to reset shared message information")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_reset_share() */
/*-------------------------------------------------------------------------
* Function: H5O_delete
*
* Purpose: Delete an object header from a file. This frees the file
* space used for the object header (and it's continuation blocks)
* and also walks through each header message and asks it to
* remove all the pieces of the file referenced by the header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 19 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_delete(H5F_t *f, hid_t dxpl_id, haddr_t addr)
{
H5O_t *oh = NULL; /* Object header information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_delete,FAIL)
/* Check args */
HDassert(f);
HDassert(H5F_addr_defined(addr));
/* Get the object header information */
if(NULL == (oh = H5AC_protect(f, dxpl_id, H5AC_OHDR, addr, NULL, NULL, H5AC_WRITE)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Delete object */
if(H5O_delete_oh(f, dxpl_id, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "can't delete object from file")
done:
if(oh && H5AC_unprotect(f, dxpl_id, H5AC_OHDR, addr, oh, H5AC__DIRTIED_FLAG | H5C__DELETED_FLAG) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_delete() */
/*-------------------------------------------------------------------------
* Function: H5O_delete_oh
*
* Purpose: Internal function to:
* Delete an object header from a file. This frees the file
* space used for the object header (and it's continuation blocks)
* and also walks through each header message and asks it to
* remove all the pieces of the file referenced by the header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Mar 19 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_delete_oh(H5F_t *f, hid_t dxpl_id, H5O_t *oh)
{
H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */
unsigned u;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_delete_oh)
/* Check args */
HDassert(f);
HDassert(oh);
/* Walk through the list of object header messages, asking each one to
* delete any file space used
*/
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
/* Free any space referred to in the file from this message */
if(H5O_delete_mesg(f, dxpl_id, curr_msg, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
} /* end for */
/* Free main (first) object header "chunk" */
if(H5MF_xfree(f, H5FD_MEM_OHDR, dxpl_id, oh->chunk[0].addr, (hsize_t)oh->chunk[0].size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to free object header")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_delete_oh() */
/*-------------------------------------------------------------------------
* Function: H5O_delete_mesg
*
* Purpose: Internal function to:
* Delete an object header message from a file. This frees the file
* space used for anything referred to in the object header message.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* September 26 2003
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_delete_mesg(H5F_t *f, hid_t dxpl_id, H5O_mesg_t *mesg, hbool_t adj_link)
{
const H5O_msg_class_t *type; /* Type of object to free */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_delete_mesg)
/* Check args */
HDassert(f);
HDassert(mesg);
/* Get the message to free's type */
if(mesg->flags & H5O_FLAG_SHARED)
{
type = H5O_MSG_SHARED;
}
else
type = mesg->type;
/* Check if there is a file space deletion callback for this type of message */
if(type->del) {
/* Decode the message if necessary. */
if(NULL == mesg->native) {
HDassert(type->decode);
if(NULL == (mesg->native = (type->decode)(f, dxpl_id, mesg->raw)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode message")
} /* end if */
/* Check if this message needs to be removed from the SOHM table */
/* JAMES: there should be a callback, maybe in H5O_shared_delete, to fiddle w/ the ref. count.
* We shouldn't need to do a search in the SOHM table on delete. */
if(type == H5O_MSG_SHARED)
{
/* JAMES ugly! And not quite correct. */
void * mesg_orig;
if(NULL == (mesg_orig = H5O_shared_read(f, dxpl_id, mesg->native, mesg->type, NULL)))
HGOTO_ERROR (H5E_OHDR, H5E_BADMESG, FAIL, "unable to read shared message")
if(H5SM_try_delete(f, dxpl_id, mesg->type->id, mesg->native) < 0)
HGOTO_ERROR (H5E_OHDR, H5E_CANTFREE, FAIL, "unable to delete message from SOHM table")
H5O_free(mesg->type->id, mesg_orig);
}
if((type->del)(f, dxpl_id, mesg->native, adj_link) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_delete_msg() */
/*-------------------------------------------------------------------------
* Function: H5O_get_info
*
* Purpose: Retrieve information about an object header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 7 2003
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_get_info(H5O_loc_t *loc, H5O_stat_t *ostat, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header information */
H5O_mesg_t *curr_msg; /* Pointer to current message being operated on */
hsize_t total_size; /* Total amount of space used in file */
hsize_t free_space; /* Free space in object header */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_get_info, FAIL)
/* Check args */
HDassert(loc);
HDassert(ostat);
/* Get the object header information */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Iterate over all the messages, accumulating the total size & free space */
total_size = H5O_SIZEOF_HDR_OH(oh);
free_space = 0;
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
/* Accumulate the size for this message */
total_size += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size;
/* Check for this message being free space */
if(H5O_NULL_ID == curr_msg->type->id)
free_space += H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg->raw_size;
} /* end for */
/* Set the information for this object header */
ostat->size = total_size;
ostat->free = free_space;
ostat->nmesgs = oh->nmesgs;
ostat->nchunks = oh->nchunks;
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_get_info() */
/*-------------------------------------------------------------------------
* Function: H5O_encode
*
* Purpose: Encode an object(data type and simple data space only)
* description into a buffer.
*
* Return: Success: Non-negative
*
* Failure: Negative
*
* Programmer: Raymond Lu
* slu@ncsa.uiuc.edu
* July 13, 2004
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_encode(H5F_t *f, unsigned char *buf, const void *obj, unsigned type_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_encode,FAIL)
/* check args */
HDassert(f);
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Encode */
if((type->encode)(f, buf, obj) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "unable to encode message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_encode() */
/*-------------------------------------------------------------------------
* Function: H5O_decode
*
* Purpose: Decode a binary object description and return a new
* object handle.
*
* Note: This routine is not guaranteed to work with all possible
* header messages, use with care.
*
* Return: Success: Pointer to object(data type or space)
*
* Failure: NULL
*
* Programmer: Raymond Lu
* slu@ncsa.uiuc.edu
* July 14, 2004
*
*-------------------------------------------------------------------------
*/
void *
H5O_decode(H5F_t *f, hid_t dxpl_id, const unsigned char *buf, unsigned type_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
void *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_decode, NULL)
/* check args */
HDassert(f);
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* decode */
if((ret_value = (type->decode)(f, dxpl_id, buf)) == NULL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, NULL, "unable to decode message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_decode() */
/*-------------------------------------------------------------------------
* Function: H5O_iterate
*
* Purpose: Iterate through object headers of a certain type.
*
* Return: Returns a negative value if something is wrong, the return
* value of the last operator if it was non-zero, or zero if all
* object headers were processed.
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Nov 19 2004
*
* Description:
* This function interates over the object headers of an object
* specified with 'ent' of type 'type_id'. For each object header of the
* object, the 'op_data' and some additional information (specified below) are
* passed to the 'op' function.
* The operation receives a pointer to the object header message for the
* object being iterated over ('mesg'), and the pointer to the operator data
* passed in to H5O_iterate ('op_data'). The return values from an operator
* are:
* A. Zero causes the iterator to continue, returning zero when all
* object headers of that type have been processed.
* B. Positive causes the iterator to immediately return that positive
* value, indicating short-circuit success.
* C. Negative causes the iterator to immediately return that value,
* indicating failure.
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_iterate(const H5O_loc_t *loc, unsigned type_id, H5O_operator_t app_op,
void *op_data, hid_t dxpl_id)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
H5O_mesg_operator_t op; /* Wrapper for operator */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_iterate, FAIL)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
/* Call the "real" iterate routine */
op.app_op = app_op;
if((ret_value = H5O_iterate_real(loc, type, H5AC_READ, FALSE, op, op_data, dxpl_id)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADITER, FAIL, "unable to iterate over object header messages")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_iterate() */
/*-------------------------------------------------------------------------
* Function: H5O_iterate_real
*
* Purpose: Iterate through object headers of a certain type.
*
* Return: Returns a negative value if something is wrong, the return
* value of the last operator if it was non-zero, or zero if all
* object headers were processed.
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Sep 6 2005
*
* Description:
* This function interates over the object headers of an object
* specified with 'ent' of type 'type_id'. For each object header of the
* object, the 'op_data' and some additional information (specified below) are
* passed to the 'op' function.
* The operation receives a pointer to the object header message for the
* object being iterated over ('mesg'), and the pointer to the operator data
* passed in to H5O_iterate ('op_data'). The return values from an operator
* are:
* A. Zero causes the iterator to continue, returning zero when all
* object headers of that type have been processed.
* B. Positive causes the iterator to immediately return that positive
* value, indicating short-circuit success.
* C. Negative causes the iterator to immediately return that value,
* indicating failure.
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_iterate_real(const H5O_loc_t *loc, const H5O_msg_class_t *type, H5AC_protect_t prot,
hbool_t internal, H5O_mesg_operator_t op, void *op_data, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Pointer to actual object header */
unsigned oh_flags = H5AC__NO_FLAGS_SET; /* Start iteration with no flags set on object header */
unsigned idx; /* Absolute index of current message in all messages */
unsigned sequence; /* Relative index of current message for messages of type */
H5O_mesg_t *idx_msg; /* Pointer to current message */
herr_t ret_value = H5O_ITER_CONT; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_iterate_real)
/* check args */
HDassert(loc);
HDassert(loc->file);
HDassert(H5F_addr_defined(loc->addr));
HDassert(type);
HDassert(op.app_op);
/* Protect the object header to iterate over */
if (NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, prot)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Iterate over messages */
for(sequence = 0, idx = 0, idx_msg = &oh->mesg[0]; idx < oh->nmesgs && !ret_value; idx++, idx_msg++) {
if(type->id == idx_msg->type->id) {
void * unshared_mesg; /* JAMES */
/*
* Decode the message if necessary. If the message is shared then decode
* a shared message, ignoring the message type.
*/
LOAD_NATIVE(loc->file, dxpl_id, idx_msg, FAIL)
/* JAMES: test */
if(idx_msg->flags & H5O_FLAG_SHARED)
{
if(NULL == (unshared_mesg = H5O_shared_read(loc->file, dxpl_id, idx_msg->native, idx_msg->type, NULL)))
HGOTO_ERROR(H5E_OHDR, H5E_BADMESG, FAIL, "unable to read shared message");
}
else
unshared_mesg = idx_msg->native;
/* Check for making an "internal" (i.e. within the H5O package) callback */
if(internal) {
/* Call the "internal" iterator callback */
if((ret_value = (op.lib_op)(oh, idx_msg, sequence, &oh_flags, op_data)) != 0)
break;
} /* end if */
else {
/* Call the iterator callback */
/* JAMES if((ret_value = (op.app_op)(idx_msg->native, sequence, op_data)) != 0)
break;
*/
if((ret_value = (op.app_op)(unshared_mesg, sequence, op_data)) != 0)
break;
} /* end else */
/* JAMES again */
if(idx_msg->flags & H5O_FLAG_SHARED)
{
H5O_free_real(idx_msg->type, unshared_mesg);
}
/* Check for error from iterator */
if(ret_value < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "iterator function failed")
/* Increment sequence value for message type */
sequence++;
} /* end if */
} /* end for */
done:
if(oh) {
/* Check if object header was modified */
if(oh_flags & H5AC__DIRTIED_FLAG) {
/* Shouldn't be able to modify object header if we don't have write access */
HDassert(prot == H5AC_WRITE);
/* Try to condense object header info */
/* (Since this routine is invoked when a message is removed from
* an object header, the header will be condensed after each
* message removal)
*/
if(H5O_condense_header(loc->file, oh, dxpl_id) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't pack object header")
H5O_touch_oh(loc->file, dxpl_id, oh, FALSE, &oh_flags);
} /* end if */
if(H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, oh_flags) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_iterate_real() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_type
*
* Purpose: Returns the type of object pointed to by `loc'.
*
* Return: Success: An object type defined in H5Gpublic.h
* Failure: H5G_UNKNOWN
*
* Programmer: Robb Matzke
* Wednesday, November 4, 1998
*
*-------------------------------------------------------------------------
*/
H5G_obj_t
H5O_obj_type(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header for location */
H5G_obj_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_obj_type, H5G_UNKNOWN)
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, H5G_UNKNOWN, "unable to load object header")
/* Test whether entry qualifies as a particular type of object */
if((ret_value = H5O_obj_type_real(oh)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, H5G_UNKNOWN, "unable to determine object type")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, H5G_UNKNOWN, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_type() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_type_real
*
* Purpose: Returns the type of object pointed to by `oh'.
*
* Return: Success: An object type defined in H5Gpublic.h
* Failure: H5G_UNKNOWN
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
static H5G_obj_t
H5O_obj_type_real(H5O_t *oh)
{
const H5O_obj_class_t *obj_class; /* Class of object for header */
H5G_obj_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_obj_type_real)
/* Sanity check */
HDassert(oh);
/* Look up class for object header */
if(NULL == (obj_class = H5O_obj_class_real(oh)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTGET, H5G_UNKNOWN, "unable to determine object type")
/* Set return value */
ret_value = obj_class->type;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_type_real() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_class
*
* Purpose: Returns the class of object pointed to by `loc'.
*
* Return: Success: An object class
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 6, 2006
*
*-------------------------------------------------------------------------
*/
static const H5O_obj_class_t *
H5O_obj_class(H5O_loc_t *loc, hid_t dxpl_id)
{
H5O_t *oh = NULL; /* Object header for location */
const H5O_obj_class_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_obj_class)
/* Load the object header */
if(NULL == (oh = H5AC_protect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "unable to load object header")
/* Test whether entry qualifies as a particular type of object */
if(NULL == (ret_value = H5O_obj_class_real(oh)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
done:
if(oh && H5AC_unprotect(loc->file, dxpl_id, H5AC_OHDR, loc->addr, oh, H5AC__NO_FLAGS_SET) != SUCCEED)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, NULL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_class() */
/*-------------------------------------------------------------------------
* Function: H5O_obj_class_real
*
* Purpose: Returns the class of object pointed to by `oh'.
*
* Return: Success: An object class
* Failure: NULL
*
* Programmer: Quincey Koziol
* Monday, November 21, 2005
*
*-------------------------------------------------------------------------
*/
static const H5O_obj_class_t *
H5O_obj_class_real(H5O_t *oh)
{
size_t i; /* Local index variable */
const H5O_obj_class_t *ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_obj_class_real)
/* Sanity check */
HDassert(oh);
/* Test whether entry qualifies as a particular type of object */
/* (Note: loop is in reverse order, to test specific objects first) */
for(i = NELMTS(H5O_obj_class_g); i > 0; --i) {
htri_t isa; /* Is entry a particular type? */
if((isa = (H5O_obj_class_g[i - 1]->isa)(oh)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
else if(isa)
HGOTO_DONE(H5O_obj_class_g[i - 1])
} /* end for */
if(0 == i)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to determine object type")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_obj_class_real() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_reset
*
* Purpose: Reset a object location to an empty state
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, September 19, 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_reset(H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_reset)
/* Check arguments */
HDassert(loc);
/* Clear the object location to an empty state */
HDmemset(loc, 0, sizeof(H5O_loc_t));
loc->addr = HADDR_UNDEF;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_reset() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_copy
*
* Purpose: Copy object location information
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Monday, September 19, 2005
*
* Notes: 'depth' parameter determines how much of the group entry
* structure we want to copy. The values are:
* H5_COPY_SHALLOW - Copy all the field values from the source
* to the destination, but not copying objects pointed to.
* (Destination "takes ownership" of objects pointed to)
* H5_COPY_DEEP - Copy all the fields from the source to
* the destination, deep copying objects pointed to.
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_copy(H5O_loc_t *dst, const H5O_loc_t *src, H5_copy_depth_t depth)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_copy)
/* Check arguments */
HDassert(src);
HDassert(dst);
HDassert(depth == H5_COPY_SHALLOW || depth == H5_COPY_DEEP);
/* Copy the top level information */
HDmemcpy(dst, src, sizeof(H5O_loc_t));
/* Deep copy the names */
if(depth == H5_COPY_DEEP) {
/* If the original entry was holding open the file, this one should
* hold it open, too.
*/
if(src->holding_file)
dst->file->nopen_objs++;
} else if(depth == H5_COPY_SHALLOW) {
/* Discarding 'const' qualifier OK - QAK */
H5O_loc_reset((H5O_loc_t *)src);
} /* end if */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_copy() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_hold_file
*
* Purpose: Have this object header hold a file open until it is
* released.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* Wednesday, August 16, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_hold_file(H5O_loc_t *loc)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_loc_hold_file)
/* Check arguments */
HDassert(loc);
HDassert(loc->file);
/* If this location is not already holding its file open, do so. */
if(!loc->holding_file)
{
loc->file->nopen_objs++;
loc->holding_file = TRUE;
}
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_loc_hold_file() */
/*-------------------------------------------------------------------------
* Function: H5O_loc_free
*
* Purpose: Release resources used by this object header location.
* Not to be confused with H5O_close; this is used on
* locations that don't correspond to open objects.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: James Laird
* Wednesday, August 16, 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_loc_free(H5O_loc_t *loc)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5O_loc_free)
/* Check arguments */
HDassert(loc);
/* If this location is holding its file open try to close the file. */
if(loc->holding_file)
{
loc->file->nopen_objs--;
loc->holding_file = FALSE;
if(loc->file->nopen_objs <= 0) {
if(H5F_try_close(loc->file) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "can't close file")
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_loc_free() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_mesg_file
*
* Purpose: Copies a message to file. If MESG is is the null pointer then a null
* pointer is returned with no error.
*
* Return: Success: Ptr to the new message
*
* Failure: NULL
*
* Programmer: Peter Cao
* June 4, 2005
*
*-------------------------------------------------------------------------
*/
void *
H5O_copy_mesg_file(const H5O_msg_class_t *copy_type, const H5O_msg_class_t *mesg_type, H5F_t *file_src, void *native_src,
H5F_t *file_dst, hid_t dxpl_id, H5O_copy_t *cpy_info, void *udata)
{
void *ret_value;
FUNC_ENTER_NOAPI_NOINIT(H5O_copy_mesg_file)
/* check args */
HDassert(copy_type);
HDassert(mesg_type);
HDassert(copy_type->copy_file);
HDassert(file_src);
HDassert(native_src);
HDassert(file_dst);
HDassert(cpy_info);
if(NULL == (ret_value = (copy_type->copy_file)(file_src, mesg_type, native_src, file_dst, dxpl_id, cpy_info, udata)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, NULL, "unable to copy object header message to file")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_mesg_file() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_header_real
*
* Purpose: Copy header object from one location to another using
* pre-copy, copy, and post-copy callbacks for each message
* type.
*
* The source header object is compressed into a single chunk
* (since we know how big it is) and any continuation messages
* are converted into NULL messages.
*
* By default, NULL messages are not copied.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Peter Cao
* May 30, 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_copy_header_real(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
hid_t dxpl_id, H5O_copy_t *cpy_info)
{
H5O_addr_map_t *addr_map = NULL; /* Address mapping of object copied */
H5O_t *oh_src = NULL; /* Object header for source object */
H5O_t *oh_dst = NULL; /* Object header for destination object */
unsigned chunkno = 0, mesgno = 0;
haddr_t addr_new = HADDR_UNDEF;
hbool_t *deleted = NULL; /* Array of flags indicating whether messages should be copied */
size_t null_msgs; /* Number of NULL messages found in each loop */
H5O_mesg_t *mesg_src; /* Message in source object header */
H5O_mesg_t *mesg_dst; /* Message in source object header */
const H5O_msg_class_t *copy_type; /* Type of message to use for copying */
const H5O_obj_class_t *obj_class = NULL; /* Type of object we are copying */
void *udata = NULL; /* User data for passing to message
callbacks */
size_t dst_oh_size; /* Total size of the destination OH */
uint8_t *current_pos; /* Current position in destination image */
size_t msghdr_size;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5O_copy_header_real)
HDassert(oloc_src);
HDassert(oloc_src->file);
HDassert(H5F_addr_defined(oloc_src->addr));
HDassert(oloc_dst->file);
HDassert(cpy_info);
/* Get source object header */
if(NULL == (oh_src = H5AC_protect(oloc_src->file, dxpl_id, H5AC_OHDR, oloc_src->addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* Get pointer to object class for this object */
if(NULL == (obj_class = H5O_obj_class_real(oh_src)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to determine object type")
/* Retrieve user data for particular type of object to copy */
if(obj_class->get_copy_file_udata &&
(NULL == (udata = (obj_class->get_copy_file_udata)())))
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to retrieve copy user data")
/* Flush any dirty messages in source object header to update the header chunks */
if(H5O_flush_msgs(oloc_src->file, oh_src) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTFLUSH, FAIL, "unable to flush object header messages")
/* Allocate the destination object header and fill in header fields */
if(NULL == (oh_dst = H5FL_MALLOC(H5O_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Initialize header information */
oh_dst->version = oh_src->version;
oh_dst->nlink = 0;
/* Initialize size of chunk array. The destination always has only one
* chunk.
*/
oh_dst->alloc_nchunks = oh_dst->nchunks = 1;
/* Allocate memory for the chunk array */
if(NULL == (oh_dst->chunk = H5FL_SEQ_MALLOC(H5O_chunk_t, oh_dst->alloc_nchunks)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Allocate memory for "deleted" array. This array marks the message in
* the source that shouldn't be copied to the destination.
*/
if(NULL == (deleted = HDmalloc(sizeof(hbool_t) * oh_src->nmesgs)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
HDmemset(deleted, FALSE, sizeof(hbool_t) * oh_src->nmesgs);
/* "pre copy" pass over messages, to gather information for actual message copy operation
* (for messages which depend on information from other messages)
* Keep track of how many NULL or deleted messages we find (or create)
*/
null_msgs = 0;
for(mesgno = 0; mesgno < oh_src->nmesgs; mesgno++) {
/* Set up convenience variables */
mesg_src = &(oh_src->mesg[mesgno]);
mesg_dst = &(oh_dst->mesg[mesgno]);
/* Sanity check */
HDassert(!mesg_src->dirty); /* Should be cleared by earlier call to flush messages */
/* Check for shared message to operate on */
if(mesg_src->flags & H5O_FLAG_SHARED)
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_src->type;
/* Check for continuation message; these are converted to NULL
* messages because the destination OH will have only one chunk
*/
if(H5O_CONT_ID == mesg_src->type->id || H5O_NULL_ID == mesg_src->type->id) {
deleted[mesgno] = TRUE;
++null_msgs;
copy_type = H5O_MSG_NULL;
}
HDassert(copy_type);
if(copy_type->pre_copy_file ) {
/*
* Decode the message if necessary. If the message is shared then do
* a shared message, ignoring the message type.
*/
if(NULL == mesg_src->native) {
/* Decode the message if necessary */
HDassert(copy_type->decode);
if(NULL == (mesg_src->native = (copy_type->decode)(oloc_src->file, dxpl_id, mesg_src->raw)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode a message")
} /* end if (NULL == mesg_src->native) */
/* Perform "pre copy" operation on message */
if((copy_type->pre_copy_file)(oloc_src->file, mesg_src->type, mesg_src->native, &(deleted[mesgno]), cpy_info, udata) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to perform 'pre copy' operation on message")
/* Check if the message should be deleted in the destination */
if(deleted[mesgno]) {
/* Mark message as deleted */
++null_msgs;
} /* end if(deleted) */
} /* end if(copy_type->pre_copy_file) */
} /* end for */
/* Initialize size of message list. It may or may not include the NULL messages
* detected above.
*/
if(cpy_info->preserve_null)
oh_dst->alloc_nmesgs = oh_dst->nmesgs = oh_src->nmesgs;
else
oh_dst->alloc_nmesgs = oh_dst->nmesgs = (oh_src->nmesgs - null_msgs);
/* Allocate memory for destination message array */
if(oh_dst->alloc_nmesgs > 0) {
if(NULL == (oh_dst->mesg = H5FL_SEQ_CALLOC(H5O_mesg_t, oh_dst->alloc_nmesgs)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
}
/* "copy" pass over messages, to perform main message copying */
null_msgs = 0;
for(mesgno = 0; mesgno < oh_dst->nmesgs; mesgno++) {
/* Skip any deleted or NULL messages in the source unless the
* preserve_null flag is set
*/
if(FALSE == cpy_info->preserve_null) {
while(deleted[mesgno + null_msgs]) {
++null_msgs;
HDassert(mesgno + null_msgs < oh_src->nmesgs);
}
}
/* Set up convenience variables */
mesg_src = &(oh_src->mesg[mesgno + null_msgs]);
mesg_dst = &(oh_dst->mesg[mesgno]);
/* Initialize on destination message */
mesg_dst->chunkno = 0;
mesg_dst->dirty = FALSE;
mesg_dst->flags = mesg_src->flags;
mesg_dst->native = NULL;
mesg_dst->raw = NULL;
mesg_dst->raw_size = mesg_src->raw_size;
mesg_dst->type = mesg_src->type;
/* If we're preserving deleted messages, set their types to 'NULL'
* in the destination.
*/
if(cpy_info->preserve_null && deleted[mesgno]) {
mesg_dst->type = H5O_MSG_NULL;
}
/* Check for shared message to operate on */
/* (Use destination message, in case the message has been removed (i.e
* converted to a nil message) in the destination -QAK)
*/
if(mesg_dst->flags & H5O_FLAG_SHARED)
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_dst->type;
HDassert(copy_type);
/* copy this message into destination file */
if(copy_type->copy_file) {
/*
* Decode the message if necessary. If the message is shared then do
* a shared message, ignoring the message type.
*/
if(NULL == mesg_src->native) {
/* Decode the message if necessary */
HDassert(copy_type->decode);
if(NULL == (mesg_src->native = (copy_type->decode)(oloc_src->file, dxpl_id, mesg_src->raw)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode a message")
} /* end if (NULL == mesg_src->native) */
/* Copy the source message */
if((mesg_dst->native = H5O_copy_mesg_file(copy_type, mesg_dst->type,
oloc_src->file, mesg_src->native, oloc_dst->file, dxpl_id,
cpy_info, udata)) == NULL)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object header message")
/* Mark the message in the destination as dirty, so it'll get encoded when the object header is flushed */
mesg_dst->dirty = TRUE;
} /* end if (mesg_src->type->copy_file) */
} /* end of mesgno loop */
/* Allocate the destination header and copy any messages that didn't have
* copy callbacks. They get copied directly from the source image to the
* destination image.
*/
/* Calculate how big the destination object header will be on disk.
* This isn't necessarily the same size as the original.
*/
dst_oh_size = H5O_SIZEOF_HDR_OH(oh_dst);
/* Add space for messages. */
for(mesgno = 0; mesgno < oh_dst->nmesgs; mesgno++) {
dst_oh_size += H5O_SIZEOF_MSGHDR_OH(oh_dst);
dst_oh_size += H5O_ALIGN_OH(oh_dst, oh_dst->mesg[mesgno].raw_size);
}
/* Allocate space for chunk in destination file */
if(HADDR_UNDEF == (oh_dst->chunk[0].addr = H5MF_alloc(oloc_dst->file, H5FD_MEM_OHDR, dxpl_id, (hsize_t)dst_oh_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "file allocation failed for object header")
addr_new = oh_dst->chunk[0].addr;
/* Create memory image for the new chunk */
if(NULL == (oh_dst->chunk[0].image = H5FL_BLK_MALLOC(chunk_image, dst_oh_size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Set dest. chunk information */
oh_dst->chunk[0].dirty = TRUE;
oh_dst->chunk[0].size = dst_oh_size;
oh_dst->chunk[0].gap = 0;
/* Set up raw pointers and copy messages that didn't need special
* treatment. This has to happen after the destination header has been
* allocated.
*/
HDassert(H5O_SIZEOF_HDR_OH(oh_src) == H5O_SIZEOF_HDR_OH(oh_dst));
HDassert(H5O_SIZEOF_MSGHDR_OH(oh_src) == H5O_SIZEOF_MSGHDR_OH(oh_dst));
msghdr_size = H5O_SIZEOF_MSGHDR_OH(oh_src);
current_pos = oh_dst->chunk[0].image;
/* Copy the message header. Most of this will be overwritten when
* the header is flushed to disk, but later versions have a
* magic number that isn't.
*/
HDmemcpy(current_pos, oh_src->chunk[0].image,
H5O_SIZEOF_HDR_OH(oh_dst) - H5O_SIZEOF_CHKSUM_OH(oh_dst));
current_pos += H5O_SIZEOF_HDR_OH(oh_dst) - H5O_SIZEOF_CHKSUM_OH(oh_dst);
/* JAMES: include this in loop above? Doesn't take deleted messages
* into account
*/
/* Copy each message that wasn't dirtied above */
null_msgs = 0;
for(mesgno = 0; mesgno < oh_dst->nmesgs; mesgno++) {
/* Skip any deleted or NULL messages in the source unless the
* preserve_null flag is set
*/
if(FALSE == cpy_info->preserve_null) {
while(deleted[mesgno + null_msgs]) {
++null_msgs;
HDassert(mesgno + null_msgs < oh_src->nmesgs);
}
}
/* Set up convenience variables */
mesg_src = &(oh_src->mesg[mesgno + null_msgs]);
mesg_dst = &(oh_dst->mesg[mesgno]);
if(! mesg_dst->dirty) {
/* Copy the message header plus the message's raw data. */
HDmemcpy(current_pos, mesg_src->raw - msghdr_size,
msghdr_size + mesg_src->raw_size);
}
mesg_dst->raw = current_pos + msghdr_size;
current_pos += mesg_dst->raw_size + msghdr_size;
}
/* Make sure we filled the chunk, except for room at the end for a checksum */
HDassert(current_pos + H5O_SIZEOF_CHKSUM_OH(oh_dst) == dst_oh_size + oh_dst->chunk[0].image);
/* Set the dest. object location to the first chunk address */
HDassert(H5F_addr_defined(addr_new));
oloc_dst->addr = addr_new;
/* Allocate space for the address mapping of the object copied */
if(NULL == (addr_map = H5FL_MALLOC(H5O_addr_map_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Insert the address mapping for the new object into the copied list */
/* (Do this here, because "post copy" possibly checks it) */
addr_map->src_addr = oloc_src->addr;
addr_map->dst_addr = oloc_dst->addr;
addr_map->is_locked = TRUE; /* We've locked the object currently */
addr_map->inc_ref_count = 0; /* Start with no additional ref counts to add */
if(H5SL_insert(cpy_info->map_list, addr_map, &(addr_map->src_addr)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't insert object into skip list")
/* "post copy" loop over messages, to fix up any messages which require a complete
* object header for destination object
*/
null_msgs = 0;
for(mesgno = 0; mesgno < oh_dst->nmesgs; mesgno++) {
/* Skip any deleted or NULL messages in the source unless the
* preserve_null flag is set
*/
if(FALSE == cpy_info->preserve_null) {
while(deleted[mesgno + null_msgs]) {
++null_msgs;
HDassert(mesgno + null_msgs < oh_src->nmesgs);
}
}
/* Set up convenience variables */
mesg_src = &(oh_src->mesg[mesgno + null_msgs]);
mesg_dst = &(oh_dst->mesg[mesgno]);
/* Check for shared message to operate on */
/* (Use destination message, in case the message has been removed (i.e
* converted to a nil message) in the destination -QAK)
*/
if(mesg_dst->flags & H5O_FLAG_SHARED)
copy_type = H5O_MSG_SHARED;
else
copy_type = mesg_dst->type;
HDassert(copy_type);
if(copy_type->post_copy_file && mesg_src->native) {
/* Sanity check destination message */
HDassert(mesg_dst->type == mesg_src->type);
HDassert(mesg_dst->native);
/* Perform "post copy" operation on message */
if((copy_type->post_copy_file)(oloc_src, mesg_src->native, oloc_dst,
mesg_dst->native, dxpl_id, cpy_info) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to perform 'post copy' operation on message")
} /* end if */
} /* end for */
/* Indicate that the destination address will no longer be locked */
addr_map->is_locked = FALSE;
/* Increment object header's reference count, if any descendents have created links to link to this object */
if(addr_map->inc_ref_count) {
H5_CHECK_OVERFLOW(addr_map->inc_ref_count, hsize_t, int);
oh_dst->nlink += (int)addr_map->inc_ref_count;
} /* end if */
/* Insert destination object header in cache */
if(H5AC_set(oloc_dst->file, dxpl_id, H5AC_OHDR, oloc_dst->addr, oh_dst, H5AC__DIRTIED_FLAG) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to cache object header")
done:
/* Free deleted array */
if(deleted) {
HDfree(deleted);
}
/* Release pointer to source object header and its derived objects */
if(oh_src != NULL) {
/* Unprotect the source object header */
if(H5AC_unprotect(oloc_src->file, dxpl_id, H5AC_OHDR, oloc_src->addr, oh_src, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
} /* end if */
/* Release pointer to destination object header */
if(ret_value < 0 && oh_dst) {
if(H5O_dest(oloc_dst->file, oh_dst) < 0)
HDONE_ERROR(H5E_OHDR, H5E_CANTFREE, FAIL, "unable to destroy object header data")
} /* end if */
/* Release user data for particular type of object to copy */
if(udata) {
HDassert(obj_class);
HDassert(obj_class->free_copy_file_udata);
(obj_class->free_copy_file_udata)(udata);
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_header_real() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_header_map
*
* Purpose: Copy header object from one location to another, detecting
* already mapped objects, etc.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* November 1, 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_copy_header_map(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
hid_t dxpl_id, H5O_copy_t *cpy_info, hbool_t inc_depth)
{
H5O_addr_map_t *addr_map; /* Address mapping of object copied */
hbool_t inc_link; /* Whether to increment the link count for the object */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_copy_header_map, FAIL)
/* Sanity check */
HDassert(oloc_src);
HDassert(oloc_dst);
HDassert(oloc_dst->file);
HDassert(cpy_info);
/* Look up the address of the object to copy in the skip list */
addr_map = (H5O_addr_map_t *)H5SL_search(cpy_info->map_list, &(oloc_src->addr));
/* Check if address is already in list of objects copied */
if(addr_map == NULL) {
/* Copy object for the first time */
/* Check for incrementing the depth of copy */
/* (Can't do this for all copies, since committed datatypes should always be copied) */
if(inc_depth)
cpy_info->curr_depth++;
/* Copy object referred to */
if(H5O_copy_header_real(oloc_src, oloc_dst, dxpl_id, cpy_info) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object")
/* Check for incrementing the depth of copy */
if(inc_depth)
cpy_info->curr_depth--;
/* When an object is copied for the first time, increment it's link */
inc_link = TRUE;
/* indicate that a new object is created */
ret_value++;
} /* end if */
else {
/* Object has already been copied, set its address in destination file */
oloc_dst->addr = addr_map->dst_addr;
/* If the object is locked currently (because we are copying a group
* hierarchy and this is a link to a group higher in the hierarchy),
* increment it's deferred reference count instead of incrementing the
* reference count now.
*/
if(addr_map->is_locked) {
addr_map->inc_ref_count++;
inc_link = FALSE;
} /* end if */
else
inc_link = TRUE;
} /* end else */
/* Increment destination object's link count, if allowed */
if(inc_link)
if(H5O_link(oloc_dst, 1, dxpl_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, FAIL, "unable to increment object link count")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_header_map() */
/*--------------------------------------------------------------------------
NAME
H5O_copy_free_addrmap_cb
PURPOSE
Internal routine to free address maps from the skip list for copying objects
USAGE
herr_t H5O_copy_free_addrmap_cb(item, key, op_data)
void *item; IN/OUT: Pointer to addr
void *key; IN/OUT: (unused)
void *op_data; IN: (unused)
RETURNS
Returns zero on success, negative on failure.
DESCRIPTION
Releases the memory for the address.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
EXAMPLES
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
H5O_copy_free_addrmap_cb(void *item, void UNUSED *key, void UNUSED *op_data)
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_copy_free_addrmap_cb)
HDassert(item);
/* Release the item */
H5FL_FREE(H5O_addr_map_t, item);
FUNC_LEAVE_NOAPI(0)
} /* H5O_copy_free_addrmap_cb() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_header
*
* Purpose: copy header object from one location to another.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Peter Cao
* May 30, 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_copy_header(const H5O_loc_t *oloc_src, H5O_loc_t *oloc_dst /*out */,
hid_t dxpl_id, unsigned cpy_option)
{
H5O_copy_t cpy_info; /* Information for copying object */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_copy_header, FAIL)
HDassert(oloc_src);
HDassert(oloc_src->file);
HDassert(H5F_addr_defined(oloc_src->addr));
HDassert(oloc_dst->file);
/* Convert copy flags into copy struct */
HDmemset(&cpy_info, 0, sizeof(H5O_copy_t));
if((cpy_option & H5O_COPY_SHALLOW_HIERARCHY_FLAG) > 0) {
cpy_info.copy_shallow = TRUE;
cpy_info.max_depth = 1;
} /* end if */
else
cpy_info.max_depth = -1; /* Current default is for full, recursive hier. copy */
cpy_info.curr_depth = 0;
if((cpy_option & H5O_COPY_EXPAND_SOFT_LINK_FLAG) > 0)
cpy_info.expand_soft_link = TRUE;
if((cpy_option & H5O_COPY_EXPAND_EXT_LINK_FLAG) > 0)
cpy_info.expand_ext_link = TRUE;
if((cpy_option & H5O_COPY_EXPAND_REFERENCE_FLAG) > 0)
cpy_info.expand_ref = TRUE;
if((cpy_option & H5O_COPY_WITHOUT_ATTR_FLAG) > 0)
cpy_info.copy_without_attr = TRUE;
if((cpy_option & H5O_COPY_PRESERVE_NULL_FLAG) > 0)
cpy_info.preserve_null = TRUE;
/* Create a skip list to keep track of which objects are copied */
if((cpy_info.map_list = H5SL_create(H5SL_TYPE_HADDR, 0.5, (size_t)16)) == NULL)
HGOTO_ERROR(H5E_SLIST, H5E_CANTCREATE, FAIL, "cannot make skip list")
/* copy the object from the source file to the destination file */
if(H5O_copy_header_real(oloc_src, oloc_dst, dxpl_id, &cpy_info) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object")
done:
if(cpy_info.map_list)
H5SL_destroy(cpy_info.map_list, H5O_copy_free_addrmap_cb, NULL);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_header() */
/*-------------------------------------------------------------------------
* Function: H5O_mesg_hash
*
* Purpose: Returns a hash value for an object header message.
*
* Return: Non-H5O_HASH_UNDEF hash value on success
* H5O_HASH_UNDEF on failure
*
* Programmer: James Laird
* April 13 2006
*
*-------------------------------------------------------------------------
*/
uint32_t
H5O_mesg_hash(unsigned type_id, H5F_t *f, const void *mesg)
{
size_t buf_size;
unsigned char * buf = NULL; /* Buffer to be hashed */
uint32_t hash;
uint32_t ret_value;
FUNC_ENTER_NOAPI(H5O_mesg_hash, FAIL)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
HDassert(mesg);
HDassert(f);
/* Find out the size of buffer needed */
if((buf_size = H5O_raw_size(type_id, f, mesg)) <= 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADSIZE, FAIL, "can't find message size");
/* JAMES: revisit this! Some messages don't use as much space as they say
* they need. Quincey may have fixed this.
*/
if((buf = HDmalloc(buf_size)) == NULL)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate buffer for message");
HDmemset(buf, 0, buf_size);
if(H5O_encode(f, buf, mesg, type_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTENCODE, FAIL, "can't encode OH message");
/*
* Compute the hash value for this message. type_id is used here to
* initialize the hash algorithm, and affects the resulting value.
*/
hash = H5_checksum_lookup3(buf, buf_size, type_id);
/* JAMES: this is a pretty good hash function. Do we need to version it?
* If so, we'd do so here. */
/* A hash value of H5O_HASH_UNDEF indicates failure. If we naturally
* generated this value, reset it to some valid value. */
if(hash == H5O_HASH_UNDEF)
hash = (uint32_t) 1;
ret_value = hash;
done:
if(buf)
HDfree(buf);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_mesg_hash() */
/*-------------------------------------------------------------------------
* Function: H5O_copy_obj_by_ref
*
* Purpose: Copy the object pointed by _src_ref.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Peter Cao
* Aug 7 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_copy_obj_by_ref(H5O_loc_t *src_oloc, hid_t dxpl_id, H5O_loc_t *dst_oloc,
H5G_loc_t *dst_root_loc, H5O_copy_t *cpy_info)
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_copy_obj_by_ref, FAIL)
HDassert(src_oloc);
HDassert(dst_oloc);
/* Perform the copy, or look up existing copy */
if((ret_value = H5O_copy_header_map(src_oloc, dst_oloc, dxpl_id, cpy_info, FALSE)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTCOPY, FAIL, "unable to copy object")
/* Check if a new valid object is copied to the destination */
if(H5F_addr_defined(dst_oloc->addr) && (ret_value > SUCCEED)) {
char tmp_obj_name[80];
H5G_name_t new_path;
H5O_loc_t new_oloc;
H5G_loc_t new_loc;
/* Set up group location for new object */
new_loc.oloc = &new_oloc;
new_loc.path = &new_path;
H5G_loc_reset(&new_loc);
new_oloc.file = dst_oloc->file;
new_oloc.addr = dst_oloc->addr;
/* Pick a default name for the new object */
sprintf(tmp_obj_name, "~obj_pointed_by_%llu", (unsigned long_long)dst_oloc->addr);
/* Create a link to the newly copied object */
if(H5L_link(dst_root_loc, tmp_obj_name, &new_loc, H5P_DEFAULT, H5P_DEFAULT, dxpl_id) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to insert link")
H5G_loc_free(&new_loc);
} /* if (H5F_addr_defined(dst_oloc.addr)) */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_copy_obj_by_ref() */
#ifdef H5O_DEBUG
/*-------------------------------------------------------------------------
* Function: H5O_assert
*
* Purpose: Sanity check the information for an object header data
* structure.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 17 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_assert(const H5O_t *oh)
{
H5O_mesg_t *curr_msg; /* Pointer to current message to examine */
H5O_mesg_t *tmp_msg; /* Pointer to temporary message to examine */
unsigned u, v; /* Local index variables */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_assert)
/* Loop over all chunks in object header */
for(u = 0; u < oh->nchunks; u++) {
/* Check for valid raw data image */
HDassert(oh->chunk[u].image);
HDassert(oh->chunk[u].size > (size_t)H5O_SIZEOF_CHKHDR_OH(oh));
/* All chunks must be allocated on disk */
HDassert(H5F_addr_defined(oh->chunk[u].addr));
/* Version specific checks */
if(oh->version > H5O_VERSION_1) {
/* Make certain that the magic number is correct for each chunk */
HDassert(!HDmemcmp(oh->chunk[u].image, (u == 0 ? H5O_HDR_MAGIC : H5O_CHK_MAGIC), H5O_SIZEOF_MAGIC));
/* Check for valid gap size */
HDassert(oh->chunk[u].gap < (size_t)H5O_SIZEOF_MSGHDR_OH(oh));
} /* end if */
else
/* Gaps should never occur in version 1 of the format */
HDassert(oh->chunk[u].gap == 0);
} /* end for */
/* Loop over all messages in object header */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
/* Make certain that the message is in a valid chunk */
HDassert(curr_msg->chunkno < oh->nchunks);
/* Make certain null messages aren't in chunks with gaps */
if(H5O_NULL_ID == curr_msg->type->id)
HDassert(oh->chunk[curr_msg->chunkno].gap == 0);
/* Make certain that the message is completely in a chunk message area */
HDassert(curr_msg->raw_size <= (oh->chunk[curr_msg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[curr_msg->chunkno].gap));
if(curr_msg->chunkno == 0)
HDassert(curr_msg->raw >= oh->chunk[curr_msg->chunkno].image + (H5O_SIZEOF_HDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)));
else
HDassert(curr_msg->raw >= oh->chunk[curr_msg->chunkno].image + (H5O_SIZEOF_CHKHDR_OH(oh) - H5O_SIZEOF_CHKSUM_OH(oh)));
HDassert(curr_msg->raw + curr_msg->raw_size <= (oh->chunk[curr_msg->chunkno].image + oh->chunk[curr_msg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[curr_msg->chunkno].gap));
/* Make certain that no other messages overlap this message */
for(v = 0, tmp_msg = &oh->mesg[0]; v < oh->nmesgs; v++, tmp_msg++) {
if(u != v)
HDassert(!(tmp_msg->raw >= curr_msg->raw && tmp_msg->raw < (curr_msg->raw + curr_msg->raw_size)));
} /* end for */
} /* end for */
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5O_assert() */
#endif /* H5O_DEBUG */
/*-------------------------------------------------------------------------
* Function: H5O_debug_id
*
* Purpose: Act as a proxy for calling the 'debug' method for a
* particular class of object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Feb 13 2003
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_debug_id(unsigned type_id, H5F_t *f, hid_t dxpl_id, const void *mesg, FILE *stream, int indent, int fwidth)
{
const H5O_msg_class_t *type; /* Actual H5O class type for the ID */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_debug_id,FAIL)
/* Check args */
HDassert(type_id < NELMTS(H5O_msg_class_g));
type = H5O_msg_class_g[type_id]; /* map the type ID to the actual type object */
HDassert(type);
HDassert(type->debug);
HDassert(f);
HDassert(mesg);
HDassert(stream);
HDassert(indent >= 0);
HDassert(fwidth >= 0);
/* Call the debug method in the class */
if((ret_value = (type->debug)(f, dxpl_id, mesg, stream, indent, fwidth)) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_BADTYPE, FAIL, "unable to debug message")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_debug_id() */
/*-------------------------------------------------------------------------
* Function: H5O_debug_real
*
* Purpose: Prints debugging info about an object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_debug_real(H5F_t *f, hid_t dxpl_id, H5O_t *oh, haddr_t addr, FILE *stream, int indent, int fwidth)
{
unsigned i, chunkno;
size_t mesg_total = 0, chunk_total = 0;
int *sequence;
void *(*decode)(H5F_t*, hid_t, const uint8_t*);
herr_t (*debug)(H5F_t*, hid_t, const void*, FILE*, int, int)=NULL;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_debug_real, FAIL)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(H5F_addr_defined(addr));
HDassert(stream);
HDassert(indent >= 0);
HDassert(fwidth >= 0);
/* debug */
HDfprintf(stream, "%*sObject Header...\n", indent, "");
HDfprintf(stream, "%*s%-*s %t\n", indent, "", fwidth,
"Dirty:",
oh->cache_info.is_dirty);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Version:",
oh->version);
HDfprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Header size (in bytes):",
(unsigned)H5O_SIZEOF_HDR_OH(oh));
HDfprintf(stream, "%*s%-*s %d\n", indent, "", fwidth,
"Number of links:",
oh->nlink);
HDfprintf(stream, "%*s%-*s %Zu (%Zu)\n", indent, "", fwidth,
"Number of messages (allocated):",
oh->nmesgs, oh->alloc_nmesgs);
HDfprintf(stream, "%*s%-*s %Zu (%Zu)\n", indent, "", fwidth,
"Number of chunks (allocated):",
oh->nchunks, oh->alloc_nchunks);
/* debug each chunk */
for(i = 0, chunk_total = 0; i < oh->nchunks; i++) {
size_t chunk_size;
chunk_total += oh->chunk[i].size;
HDfprintf(stream, "%*sChunk %d...\n", indent, "", i);
HDfprintf(stream, "%*s%-*s %t\n", indent + 3, "", MAX(0, fwidth - 3),
"Dirty:",
oh->chunk[i].dirty);
HDfprintf(stream, "%*s%-*s %a\n", indent + 3, "", MAX(0, fwidth - 3),
"Address:",
oh->chunk[i].addr);
if(0 == i) {
if(H5F_addr_ne(oh->chunk[i].addr, addr))
HDfprintf(stream, "*** WRONG ADDRESS!\n");
chunk_size = oh->chunk[i].size - H5O_SIZEOF_HDR_OH(oh);
} /* end if */
else
chunk_size = oh->chunk[i].size;
HDfprintf(stream, "%*s%-*s %Zu\n", indent + 3, "", MAX(0, fwidth - 3),
"Size in bytes:",
chunk_size);
HDfprintf(stream, "%*s%-*s %Zu\n", indent + 3, "", MAX(0, fwidth - 3),
"Gap:",
oh->chunk[i].gap);
} /* end for */
/* debug each message */
if(NULL == (sequence = H5MM_calloc(NELMTS(H5O_msg_class_g) * sizeof(int))))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
for(i = 0, mesg_total = 0; i < oh->nmesgs; i++) {
mesg_total += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[i].raw_size;
HDfprintf(stream, "%*sMessage %d...\n", indent, "", i);
/* check for bad message id */
if(oh->mesg[i].type->id >= (int)NELMTS(H5O_msg_class_g)) {
HDfprintf(stream, "*** BAD MESSAGE ID 0x%04x\n",
oh->mesg[i].type->id);
continue;
} /* end if */
/* message name and size */
HDfprintf(stream, "%*s%-*s 0x%04x `%s' (%d)\n",
indent + 3, "", MAX(0, fwidth - 3),
"Message ID (sequence number):",
(unsigned) (oh->mesg[i].type->id),
oh->mesg[i].type->name,
sequence[oh->mesg[i].type->id]++);
HDfprintf (stream, "%*s%-*s %t\n", indent+3, "", MAX (0, fwidth-3),
"Dirty:",
oh->mesg[i].dirty);
HDfprintf (stream, "%*s%-*s %s\n", indent+3, "", MAX (0, fwidth-3),
"Shared:",
(oh->mesg[i].flags & H5O_FLAG_SHARED) ? "Yes" : "No");
HDfprintf(stream, "%*s%-*s %s\n", indent + 3, "", MAX(0, fwidth - 3),
"Constant:",
(oh->mesg[i].flags & H5O_FLAG_CONSTANT) ? "Yes" : "No");
if(oh->mesg[i].flags & ~H5O_FLAG_BITS) {
HDfprintf (stream, "%*s%-*s 0x%02x\n", indent+3,"",MAX(0,fwidth-3),
"*** ADDITIONAL UNKNOWN FLAGS --->",
oh->mesg[i].flags & ~H5O_FLAG_BITS);
} /* end if */
HDfprintf(stream, "%*s%-*s %Zu bytes\n", indent+3, "", MAX(0,fwidth-3),
"Raw size in obj header:",
oh->mesg[i].raw_size);
HDfprintf(stream, "%*s%-*s %u\n", indent + 3, "", MAX(0, fwidth - 3),
"Chunk number:",
oh->mesg[i].chunkno);
chunkno = oh->mesg[i].chunkno;
if(chunkno >= oh->nchunks)
HDfprintf(stream, "*** BAD CHUNK NUMBER\n");
HDfprintf(stream, "%*s%-*s %Zu\n", indent + 3, "", MAX(0, fwidth - 3),
"Raw data offset in chunk:",
(size_t)(oh->mesg[i].raw - oh->chunk[chunkno].image));
/* check the size */
if((oh->mesg[i].raw + oh->mesg[i].raw_size >
oh->chunk[chunkno].image + oh->chunk[chunkno].size) ||
(oh->mesg[i].raw < oh->chunk[chunkno].image))
HDfprintf(stream, "*** BAD MESSAGE RAW ADDRESS\n");
/* decode the message */
if(oh->mesg[i].flags & H5O_FLAG_SHARED) {
decode = H5O_MSG_SHARED->decode;
debug = H5O_MSG_SHARED->debug;
} else {
decode = oh->mesg[i].type->decode;
debug = oh->mesg[i].type->debug;
} /* end else */
if(NULL==oh->mesg[i].native && decode)
oh->mesg[i].native = (decode)(f, dxpl_id, oh->mesg[i].raw);
if(NULL == oh->mesg[i].native)
debug = NULL;
/* print the message */
HDfprintf(stream, "%*s%-*s\n", indent + 3, "", MAX(0, fwidth - 3),
"Message Information:");
if(debug)
(debug)(f, dxpl_id, oh->mesg[i].native, stream, indent + 6, MAX(0, fwidth - 6));
else
HDfprintf(stream, "%*s<No info for this message>\n", indent + 6, "");
/* If the message is shared then also print the pointed-to message */
if(oh->mesg[i].flags & H5O_FLAG_SHARED) {
H5O_shared_t *shared = (H5O_shared_t*)(oh->mesg[i].native);
void *mesg;
mesg = H5O_shared_read(f, dxpl_id, shared, oh->mesg[i].type, NULL);
if(oh->mesg[i].type->debug)
(oh->mesg[i].type->debug)(f, dxpl_id, mesg, stream, indent + 3, MAX (0, fwidth - 3));
H5O_free_real(oh->mesg[i].type, mesg);
} /* end if */
} /* end for */
sequence = H5MM_xfree(sequence);
if(mesg_total != chunk_total)
HDfprintf(stream, "*** TOTAL SIZE DOES NOT MATCH ALLOCATED SIZE!\n");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_debug_real() */
/*-------------------------------------------------------------------------
* Function: H5O_debug
*
* Purpose: Prints debugging info about an object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_debug(H5F_t *f, hid_t dxpl_id, haddr_t addr, FILE *stream, int indent, int fwidth)
{
H5O_t *oh = NULL;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_debug, FAIL)
/* check args */
HDassert(f);
HDassert(H5F_addr_defined(addr));
HDassert(stream);
HDassert(indent >= 0);
HDassert(fwidth >= 0);
if(NULL == (oh = H5AC_protect(f, dxpl_id, H5AC_OHDR, addr, NULL, NULL, H5AC_READ)))
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, FAIL, "unable to load object header")
/* debug */
H5O_debug_real(f, dxpl_id, oh, addr, stream, indent, fwidth);
done:
if(oh && H5AC_unprotect(f, dxpl_id, H5AC_OHDR, addr, oh, H5AC__NO_FLAGS_SET) < 0)
HDONE_ERROR(H5E_OHDR, H5E_PROTECT, FAIL, "unable to release object header")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5O_debug() */
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