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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5Oalloc.c
* Nov 17 2006
* Quincey Koziol <koziol@hdfgroup.org>
*
* Purpose: Object header allocation routines.
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5O_PACKAGE /*suppress error about including H5Opkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free lists */
#include "H5MFprivate.h" /* File memory management */
#include "H5Opkg.h" /* Object headers */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static herr_t H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
uint8_t *new_gap_loc, size_t new_gap_size);
static herr_t H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg,
uint8_t *new_gap_loc, size_t new_gap_size);
static herr_t H5O_alloc_null(H5O_t *oh, unsigned null_idx,
const H5O_msg_class_t *new_type, void *new_native, size_t new_size);
static herr_t H5O_alloc_msgs(H5O_t *oh, size_t min_alloc);
static htri_t H5O_alloc_extend_chunk(H5F_t *f, H5O_t *oh, unsigned chunkno,
size_t size, unsigned * msg_idx);
static unsigned H5O_alloc_new_chunk(H5F_t *f, hid_t dxpl_id, H5O_t *oh,
size_t size);
static htri_t H5O_move_msgs_forward(H5O_t *oh);
static htri_t H5O_merge_null(H5O_t *oh);
static htri_t H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id);
/*********************/
/* Package Variables */
/*********************/
/* Declare extern the free list for H5O_cont_t's */
H5FL_EXTERN(H5O_cont_t);
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/*-------------------------------------------------------------------------
* Function: H5O_add_gap
*
* Purpose: Add a gap to a chunk
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 17 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_add_gap(H5O_t *oh, unsigned chunkno, unsigned idx,
uint8_t *new_gap_loc, size_t new_gap_size)
{
hbool_t merged_with_null; /* Whether the gap was merged with a null message */
unsigned u; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_add_gap)
/* check args */
HDassert(oh);
HDassert(oh->version > H5O_VERSION_1);
HDassert(new_gap_loc);
HDassert(new_gap_size);
/* Check for existing null message in chunk */
merged_with_null = FALSE;
for(u = 0; u < oh->nmesgs && !merged_with_null; u++) {
/* Find a null message in the chunk with the new gap */
/* (a null message that's not the one we are eliminating) */
if(H5O_NULL_ID == oh->mesg[u].type->id && oh->mesg[u].chunkno == chunkno
&& u != idx) {
/* Sanity check - chunks with null messages shouldn't have a gap */
HDassert(oh->chunk[chunkno].gap == 0);
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, &oh->mesg[u], new_gap_loc, new_gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't eliminate gap in chunk")
/* Set flag to indicate that the gap was handled */
merged_with_null = TRUE;
} /* end if */
} /* end for */
/* If we couldn't find a null message in the chunk, move the gap to the end */
if(!merged_with_null) {
/* Adjust message offsets after new gap forward in chunk */
for(u = 0; u < oh->nmesgs; u++)
if(oh->mesg[u].chunkno == chunkno && oh->mesg[u].raw > new_gap_loc)
oh->mesg[u].raw -= new_gap_size;
/* Slide raw message info forward in chunk image */
HDmemmove(new_gap_loc, new_gap_loc + new_gap_size,
(size_t)((oh->chunk[chunkno].image + (oh->chunk[chunkno].size - H5O_SIZEOF_CHKSUM_OH(oh))) - (new_gap_loc + new_gap_size)));
/* Add existing gap size to new gap size */
new_gap_size += oh->chunk[chunkno].gap;
/* Merging with existing gap will allow for a new null message */
if(new_gap_size >= (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* Increment new gap size */
oh->chunk[chunkno].gap += new_gap_size;
/* Create new null message, with the tail of the previous null message */
null_msg = &(oh->mesg[oh->nmesgs++]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw_size = new_gap_size - H5O_SIZEOF_MSGHDR_OH(oh);
null_msg->raw = (oh->chunk[chunkno].image + oh->chunk[chunkno].size)
- (H5O_SIZEOF_CHKSUM_OH(oh) + null_msg->raw_size);
null_msg->chunkno = chunkno;
/* Zero out new null message's raw data */
if(null_msg->raw_size)
HDmemset(null_msg->raw, 0, null_msg->raw_size);
/* Reset size of gap in chunk */
oh->chunk[chunkno].gap = 0;
} /* end if */
else
oh->chunk[chunkno].gap = new_gap_size;
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_add_gap() */
/*-------------------------------------------------------------------------
* Function: H5O_eliminate_gap
*
* Purpose: Eliminate a gap in a chunk with a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 17 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_eliminate_gap(H5O_t *oh, H5O_mesg_t *mesg, uint8_t *gap_loc, size_t gap_size)
{
uint8_t *move_start, *move_end; /* Pointers to area of messages to move */
hbool_t null_before_gap; /* Flag whether the null message is before the gap or not */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_eliminate_gap)
/* check args */
HDassert(oh);
HDassert(oh->version > H5O_VERSION_1);
HDassert(mesg);
HDassert(gap_loc);
HDassert(gap_size);
/* Check if the null message is before or after the gap produced */
null_before_gap = (hbool_t)(mesg->raw < gap_loc);
/* Set up information about region of messages to move */
if(null_before_gap) {
move_start = mesg->raw + mesg->raw_size;
move_end = gap_loc;
} /* end if */
else {
move_start = gap_loc + gap_size;
move_end = mesg->raw - H5O_SIZEOF_MSGHDR_OH(oh);
} /* end else */
/* Check for messages between null message and gap */
if(move_end > move_start) {
unsigned u; /* Local index variable */
/* Look for messages that need to move, to adjust raw pointers in chunk */
for(u = 0; u < oh->nmesgs; u++) {
uint8_t *msg_start; /* Start of encoded message in chunk */
msg_start = oh->mesg[u].raw - H5O_SIZEOF_MSGHDR_OH(oh);
if(oh->mesg[u].chunkno == mesg->chunkno
&& (msg_start >= move_start && msg_start < move_end)) {
/* Move message's raw pointer in appropriate direction */
if(null_before_gap)
oh->mesg[u].raw += gap_size;
else
oh->mesg[u].raw -= gap_size;
} /* end if */
} /* end for */
/* Slide raw message info in chunk image */
if(null_before_gap)
/* Slide messages down */
HDmemmove(move_start + gap_size, move_start, (size_t)(move_end - move_start));
else {
/* Slide messages up */
HDmemmove(move_start - gap_size, move_start, (size_t)(move_end - move_start));
/* Adjust start of null message */
mesg->raw -= gap_size;
} /* end else */
}
else if(move_end == move_start && !null_before_gap) {
/* Slide null message up */
HDmemmove(move_start - gap_size, move_start, mesg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Adjust start of null message */
mesg->raw -= gap_size;
} /* end if */
/* Zero out addition to null message */
HDmemset(mesg->raw + mesg->raw_size, 0, gap_size);
/* Adjust size of null message */
mesg->raw_size += gap_size;
/* Mark null message as dirty */
mesg->dirty = TRUE;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5O_eliminate_gap() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_null
*
* Purpose: Allocate room for a new message from a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 22 2006
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_alloc_null(H5O_t *oh, unsigned null_idx, const H5O_msg_class_t *new_type,
void *new_native, size_t new_size)
{
H5O_mesg_t *alloc_msg; /* Pointer to null message to allocate out of */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_null)
/* check args */
HDassert(oh);
HDassert(new_type);
HDassert(new_size);
/* Point to null message to allocate out of */
alloc_msg = &oh->mesg[null_idx];
/* Check if there's a need to split the null message */
if(alloc_msg->raw_size > new_size) {
/* Check for producing a gap in the chunk */
if((alloc_msg->raw_size - new_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
size_t gap_size = alloc_msg->raw_size - new_size; /* Size of gap produced */
/* Adjust the size of the null message being eliminated */
alloc_msg->raw_size = new_size;
/* Add the gap to the chunk */
if(H5O_add_gap(oh, alloc_msg->chunkno, null_idx, alloc_msg->raw + alloc_msg->raw_size, gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't insert gap in chunk")
} /* end if */
else {
size_t new_mesg_size = new_size + H5O_SIZEOF_MSGHDR_OH(oh); /* Total size of newly allocated message */
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Check if we need to extend message table to hold the new null message */
if(oh->nmesgs >= oh->alloc_nmesgs) {
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* "Retarget" 'alloc_msg' pointer into newly re-allocated array of messages */
alloc_msg = &oh->mesg[null_idx];
} /* end if */
/* Create new null message, with the tail of the previous null message */
null_msg = &(oh->mesg[oh->nmesgs++]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw = alloc_msg->raw + new_mesg_size;
null_msg->raw_size = alloc_msg->raw_size - new_mesg_size;
null_msg->chunkno = alloc_msg->chunkno;
/* Check for gap in new null message's chunk */
if(oh->chunk[null_msg->chunkno].gap > 0) {
unsigned null_chunkno = null_msg->chunkno; /* Chunk w/gap */
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, null_msg,
((oh->chunk[null_chunkno].image + oh->chunk[null_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[null_chunkno].gap)),
oh->chunk[null_chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, UFAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[null_chunkno].gap = 0;
} /* end if */
/* Set the size of the new "real" message */
alloc_msg->raw_size = new_size;
} /* end else */
} /* end if */
/* Initialize the new message */
alloc_msg->type = new_type;
alloc_msg->dirty = TRUE;
alloc_msg->native = new_native;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_null() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_msgs
*
* Purpose: Allocate more messages for a header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Nov 21 2005
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_alloc_msgs(H5O_t *oh, size_t min_alloc)
{
size_t old_alloc; /* Old number of messages allocated */
size_t na; /* New number of messages allocated */
H5O_mesg_t *new_mesg; /* Pointer to new message array */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_msgs)
/* check args */
HDassert(oh);
/* Initialize number of messages information */
old_alloc = oh->alloc_nmesgs;
na = oh->alloc_nmesgs + MAX(oh->alloc_nmesgs, min_alloc);
/* Attempt to allocate more memory */
if(NULL == (new_mesg = H5FL_SEQ_REALLOC(H5O_mesg_t, oh->mesg, na)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Update ohdr information */
oh->alloc_nmesgs = na;
oh->mesg = new_mesg;
/* Set new object header info to zeros */
HDmemset(&oh->mesg[old_alloc], 0, (oh->alloc_nmesgs - old_alloc) * sizeof(H5O_mesg_t));
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_msgs() */
/*-------------------------------------------------------------------------
*
* Function: H5O_alloc_extend_chunk
*
* Purpose: Attempt to extend a chunk that is allocated on disk.
*
* If the extension is successful, and if the last message
* of the chunk is the null message, then that message will
* be extended with the chunk. Otherwise a new null message
* is created.
*
* f is the file in which the chunk will be written. It is
* included to ensure that there is enough space to extend
* this chunk.
*
* Return: TRUE: The chunk has been extended, and *msg_idx
* contains the message index for null message
* which is large enough to hold size bytes.
*
* FALSE: The chunk cannot be extended, and *msg_idx
* is undefined.
*
* FAIL: Some internal error has been detected.
*
* Programmer: John Mainzer -- 8/16/05
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_alloc_extend_chunk(H5F_t *f,
H5O_t *oh,
unsigned chunkno,
size_t size,
unsigned * msg_idx)
{
size_t delta; /* Change in chunk's size */
size_t aligned_size = H5O_ALIGN_OH(oh, size);
uint8_t *old_image; /* Old address of chunk's image in memory */
size_t old_size; /* Old size of chunk */
htri_t tri_result; /* Result from checking if chunk can be extended */
int extend_msg = -1;/* Index of null message to extend */
unsigned u; /* Local index variable */
htri_t ret_value = TRUE; /* return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_extend_chunk)
/* check args */
HDassert(f != NULL);
HDassert(oh != NULL);
HDassert(chunkno < oh->nchunks);
HDassert(size > 0);
HDassert(msg_idx != NULL);
HDassert(H5F_addr_defined(oh->chunk[chunkno].addr));
/* Test to see if the specified chunk ends with a null messages.
* If successful, set the index of the the null message in extend_msg.
*/
for(u = 0; u < oh->nmesgs; u++) {
/* Check for null message at end of proper chunk */
/* (account for possible checksum at end of chunk) */
if(oh->mesg[u].chunkno == chunkno && H5O_NULL_ID == oh->mesg[u].type->id &&
((oh->mesg[u].raw + oh->mesg[u].raw_size)
== ((oh->chunk[chunkno].image + oh->chunk[chunkno].size) -
(oh->chunk[chunkno].gap + H5O_SIZEOF_CHKSUM_OH(oh))))) {
extend_msg = u;
break;
} /* end if */
} /* end for */
/* If we can extend an existing null message, adjust the delta appropriately */
if(extend_msg >= 0) {
HDassert(oh->chunk[chunkno].gap == 0);
delta = aligned_size - oh->mesg[extend_msg].raw_size;
} /* end if */
else
delta = (aligned_size + H5O_SIZEOF_MSGHDR_OH(oh)) - oh->chunk[chunkno].gap;
delta = H5O_ALIGN_OH(oh, delta);
/* Determine whether the chunk can be extended */
tri_result = H5MF_can_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr,
(hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta);
if(tri_result == FALSE) /* can't extend -- we are done */
HGOTO_DONE(FALSE)
else if(tri_result < 0) /* error */
HGOTO_ERROR(H5E_RESOURCE, H5E_SYSTEM, FAIL, "can't tell if we can extend chunk")
/* If we get this far, we should be able to extend the chunk */
if(H5MF_extend(f, H5FD_MEM_OHDR, oh->chunk[chunkno].addr, (hsize_t)(oh->chunk[chunkno].size), (hsize_t)delta) < 0 )
HGOTO_ERROR(H5E_RESOURCE, H5E_SYSTEM, FAIL, "can't extend chunk")
/* If we can extend an existing null message, take care of that */
if(extend_msg >= 0) {
/* Adjust message size of existing null message */
oh->mesg[extend_msg].dirty = TRUE;
oh->mesg[extend_msg].raw_size += delta;
} /* end if */
/* Create new null message for end of chunk */
else {
/* Create a new null message */
if(oh->nmesgs >= oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* Set extension message */
extend_msg = oh->nmesgs++;
/* Initialize new null message */
oh->mesg[extend_msg].type = H5O_MSG_NULL;
oh->mesg[extend_msg].dirty = TRUE;
oh->mesg[extend_msg].native = NULL;
oh->mesg[extend_msg].raw = ((oh->chunk[chunkno].image + oh->chunk[chunkno].size)
- (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[chunkno].gap))
+ H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[extend_msg].raw_size = (delta + oh->chunk[chunkno].gap) - H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[extend_msg].chunkno = chunkno;
} /* end else */
/* Allocate more memory space for chunk's image */
old_image = oh->chunk[chunkno].image;
old_size = oh->chunk[chunkno].size;
oh->chunk[chunkno].size += delta;
oh->chunk[chunkno].image = H5FL_BLK_REALLOC(chunk_image, old_image, oh->chunk[chunkno].size);
oh->chunk[chunkno].gap = 0;
oh->chunk[chunkno].dirty = TRUE;
if(NULL == oh->chunk[chunkno].image)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed")
/* Wipe new space for chunk */
HDmemset(oh->chunk[chunkno].image + old_size, 0, oh->chunk[chunkno].size - old_size);
/* Spin through existing messages, adjusting them */
for(u = 0; u < oh->nmesgs; u++) {
/* Adjust raw addresses for messages in this chunk to reflect new 'image' address */
if(oh->mesg[u].chunkno == chunkno)
oh->mesg[u].raw = oh->chunk[chunkno].image + (oh->mesg[u].raw - old_image);
/* Find continuation message which points to this chunk and adjust chunk's size */
/* (Chunk 0 doesn't have a continuation message that points to it and
* it's size is directly encoded in the object header) */
if(chunkno > 0 && (H5O_CONT_ID == oh->mesg[u].type->id) &&
(((H5O_cont_t *)(oh->mesg[u].native))->chunkno == chunkno)) {
/* Adjust size of continuation message */
HDassert(((H5O_cont_t *)(oh->mesg[u].native))->size == old_size);
((H5O_cont_t *)(oh->mesg[u].native))->size = oh->chunk[chunkno].size;
/* Flag continuation message as dirty */
oh->mesg[u].dirty = TRUE;
} /* end if */
} /* end for */
/* Set return value */
*msg_idx = extend_msg;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_extend_chunk() */
/*-------------------------------------------------------------------------
* Function: H5O_alloc_new_chunk
*
* Purpose: Allocates a new chunk for the object header, including
* file space.
*
* One of the other chunks will get an object continuation
* message. If there isn't room in any other chunk for the
* object continuation message, then some message from
* another chunk is moved into this chunk to make room.
*
* SIZE need not be aligned.
*
* Return: Success: Index number of the null message for the
* new chunk. The null message will be at
* least SIZE bytes not counting the message
* ID or size fields.
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 7 1997
*
*-------------------------------------------------------------------------
*/
static unsigned
H5O_alloc_new_chunk(H5F_t *f,
hid_t dxpl_id,
H5O_t *oh,
size_t size)
{
size_t cont_size; /*continuation message size */
int found_null = (-1); /*best fit null message */
int found_attr = (-1); /*best fit attribute message */
int found_link = (-1); /*best fit link message */
int found_other = (-1); /*best fit other message */
unsigned idx; /*message number */
uint8_t *p = NULL; /*ptr into new chunk */
H5O_cont_t *cont = NULL; /*native continuation message */
unsigned chunkno; /* Chunk allocated */
haddr_t new_chunk_addr;
unsigned u; /* Local index variable */
unsigned ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_alloc_new_chunk)
/* check args */
HDassert(oh);
HDassert(size > 0);
size = H5O_ALIGN_OH(oh, size);
/*
* Find the smallest null message that will hold an object
* continuation message. Failing that, find the smallest message
* that could be moved to make room for the continuation message.
*
* Don't ever move continuation message from one chunk to another.
* Prioritize link messages moving to later chunks, instead of
* more "important" messages.
* Avoid moving attributes when possible to preserve their
* ordering (although ordering is *not* guaranteed!).
*
*/
cont_size = H5O_ALIGN_OH(oh, H5F_SIZEOF_ADDR(f) + H5F_SIZEOF_SIZE(f));
for(u = 0; u < oh->nmesgs; u++) {
int msg_id = oh->mesg[u].type->id; /* Temp. copy of message type ID */
if(H5O_NULL_ID == msg_id) {
if(cont_size == oh->mesg[u].raw_size) {
found_null = u;
break;
} else if(oh->mesg[u].raw_size >= cont_size &&
(found_null < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_null].raw_size)) {
found_null = u;
}
} else if(H5O_CONT_ID == msg_id) {
/*don't consider continuation messages */
} else if(H5O_ATTR_ID == msg_id) {
if(oh->mesg[u].raw_size >= cont_size &&
(found_attr < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_attr].raw_size))
found_attr = u;
} else if(H5O_LINK_ID == msg_id) {
if(oh->mesg[u].raw_size >= cont_size &&
(found_link < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_link].raw_size))
found_link = u;
} else {
if(oh->mesg[u].raw_size >= cont_size &&
(found_other < 0 ||
oh->mesg[u].raw_size < oh->mesg[found_other].raw_size))
found_other = u;
} /* end else */
} /* end for */
HDassert(found_null >= 0 || found_attr >= 0 || found_link >= 0 || found_other >= 0);
/*
* If we must move some other message to make room for the null
* message, then make sure the new chunk has enough room for that
* other message.
*
* Move link messages first, then other messages, and attributes
* only as a last resort.
*
*/
if(found_null < 0) {
if(found_link >= 0)
found_other = found_link;
if(found_other < 0)
found_other = found_attr;
HDassert(found_other >= 0);
size += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
} /* end if */
/*
* The total chunk size must include enough space for the checksum
* on the chunk and the continuation chunk magic #. (which are only present
* in later versions of the object header)
*/
size += H5O_SIZEOF_CHKHDR_OH(oh);
/*
* The total chunk size must include the requested space plus enough
* for the message header. This must be at least some minimum and a
* multiple of the alignment size.
*/
size = MAX(H5O_MIN_SIZE, size + H5O_SIZEOF_MSGHDR_OH(oh));
HDassert(size == H5O_ALIGN_OH(oh, size));
/* allocate space in file to hold the new chunk */
new_chunk_addr = H5MF_alloc(f, H5FD_MEM_OHDR, dxpl_id, (hsize_t)size);
if(HADDR_UNDEF == new_chunk_addr)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "unable to allocate space for new chunk")
/*
* Create the new chunk giving it a file address.
*/
if(oh->nchunks >= oh->alloc_nchunks) {
unsigned na = MAX(H5O_NCHUNKS, oh->alloc_nchunks * 2); /* Double # of chunks allocated */
H5O_chunk_t *x = H5FL_SEQ_REALLOC(H5O_chunk_t, oh->chunk, (size_t)na);
if(!x)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
oh->alloc_nchunks = na;
oh->chunk = x;
} /* end if */
chunkno = oh->nchunks++;
oh->chunk[chunkno].dirty = TRUE;
oh->chunk[chunkno].addr = new_chunk_addr;
oh->chunk[chunkno].size = size;
oh->chunk[chunkno].gap = 0;
if(NULL == (oh->chunk[chunkno].image = p = H5FL_BLK_CALLOC(chunk_image, size)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
/* If this is a later version of the object header format, put the magic
* # at the beginning of the chunk image.
*/
if(oh->version > H5O_VERSION_1) {
HDmemcpy(p, H5O_CHK_MAGIC, (size_t)H5O_SIZEOF_MAGIC);
p += H5O_SIZEOF_MAGIC;
} /* end if */
/*
* Make sure we have enough space for all possible new messages
* that could be generated below.
*/
if(oh->nmesgs + 3 > oh->alloc_nmesgs)
if(H5O_alloc_msgs(oh, (size_t)3) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "can't allocate more space for messages")
/* Move message (that will be replaced with continuation message)
* to new chunk, if necessary.
*/
if(found_null < 0) {
H5O_mesg_t *null_msg; /* Pointer to new null message */
/* Create null message for space that message to copy currently occupies */
found_null = oh->nmesgs++;
null_msg = &(oh->mesg[found_null]);
null_msg->type = H5O_MSG_NULL;
null_msg->dirty = TRUE;
null_msg->native = NULL;
null_msg->raw = oh->mesg[found_other].raw;
null_msg->raw_size = oh->mesg[found_other].raw_size;
null_msg->chunkno = oh->mesg[found_other].chunkno;
/* Copy the message to move to its new location */
/* (Chunk is already dirty, no need to mark it) */
HDmemcpy(p, oh->mesg[found_other].raw - H5O_SIZEOF_MSGHDR_OH(oh),
oh->mesg[found_other].raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Switch message to point to new location */
oh->mesg[found_other].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[found_other].chunkno = chunkno;
/* Account for copied message in new chunk */
p += H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
size -= H5O_SIZEOF_MSGHDR_OH(oh) + oh->mesg[found_other].raw_size;
} /* end if */
HDassert(found_null >= 0);
/* Create null message for [rest of] space in new chunk */
/* (account for chunk's magic # & checksum) */
idx = oh->nmesgs++;
oh->mesg[idx].type = H5O_MSG_NULL;
oh->mesg[idx].dirty = TRUE;
oh->mesg[idx].native = NULL;
oh->mesg[idx].raw = p + H5O_SIZEOF_MSGHDR_OH(oh);
oh->mesg[idx].raw_size = size -
(H5O_SIZEOF_CHKHDR_OH(oh) + H5O_SIZEOF_MSGHDR_OH(oh));
oh->mesg[idx].chunkno = chunkno;
/* Initialize the continuation information */
if(NULL == (cont = H5FL_MALLOC(H5O_cont_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, UFAIL, "memory allocation failed")
cont->addr = oh->chunk[chunkno].addr;
cont->size = oh->chunk[chunkno].size;
cont->chunkno = chunkno;
/* Split the null message and point at continuation message */
if(H5O_alloc_null(oh, (unsigned)found_null, H5O_MSG_CONT, cont, cont_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Set return value */
ret_value = idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc_new_chunk() */
/*-------------------------------------------------------------------------
* Function: H5O_alloc
*
* Purpose: Allocate enough space in the object header for this message.
*
* Return: Success: Index of message
*
* Failure: Negative
*
* Programmer: Robb Matzke
* matzke@llnl.gov
* Aug 6 1997
*
*-------------------------------------------------------------------------
*/
unsigned
H5O_alloc(H5F_t *f, hid_t dxpl_id, H5O_t *oh, const H5O_msg_class_t *type,
const void *mesg)
{
size_t raw_size; /* Raw size of message */
size_t aligned_size; /* Size of message including alignment */
unsigned idx; /* Index of message which fits allocation */
unsigned ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_alloc, UFAIL)
/* check args */
HDassert(oh);
HDassert(type);
HDassert(mesg);
/* Compute the size needed to store the message in the object header */
if((raw_size = (type->raw_size)(f, FALSE, mesg)) >= H5O_MESG_MAX_SIZE)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINIT, UFAIL, "object header message is too large")
aligned_size = H5O_ALIGN_OH(oh, raw_size);
/* look for a null message which is large enough */
for(idx = 0; idx < oh->nmesgs; idx++)
if(H5O_NULL_ID == oh->mesg[idx].type->id && oh->mesg[idx].raw_size >= aligned_size)
break;
/* if we didn't find one, then allocate more header space */
if(idx >= oh->nmesgs) {
unsigned chunkno;
/* check to see if we can extend one of the chunks. If we can,
* do so. Otherwise, we will have to allocate a new chunk.
*
* Note that in this new version of this function, all chunks
* must have file space allocated to them.
*/
for(chunkno = 0; chunkno < oh->nchunks; chunkno++) {
htri_t tri_result;
HDassert(H5F_addr_defined(oh->chunk[chunkno].addr));
tri_result = H5O_alloc_extend_chunk(f, oh, chunkno, raw_size, &idx);
if(tri_result == TRUE)
break;
else if(tri_result == FALSE)
idx = UFAIL;
else
HGOTO_ERROR(H5E_OHDR, H5E_SYSTEM, UFAIL, "H5O_alloc_extend_chunk failed unexpectedly")
} /* end for */
/* If idx is still UFAIL, we were not able to extend a chunk,
* create a new one.
*/
if(idx == UFAIL)
if((idx = H5O_alloc_new_chunk(f, dxpl_id, oh, raw_size)) == UFAIL)
HGOTO_ERROR(H5E_OHDR, H5E_NOSPACE, UFAIL, "unable to create a new object header data chunk")
} /* end if */
/* Split the null message and point at continuation message */
if(H5O_alloc_null(oh, idx, type, NULL, aligned_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, UFAIL, "can't split null message")
/* Mark object header as dirty in cache */
if(H5AC_mark_pinned_or_protected_entry_dirty(f, oh) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTMARKDIRTY, UFAIL, "unable to mark object header as dirty")
/* Set return value */
ret_value = idx;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_alloc() */
/*-------------------------------------------------------------------------
*
* Function: H5O_release_mesg
*
* Purpose: Convert a message into a null message
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@hdfgroup.org
* Oct 22 2006
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_release_mesg(H5F_t *f, hid_t dxpl_id, H5O_t *oh, H5O_mesg_t *mesg,
hbool_t adj_link)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_release_mesg, FAIL)
/* check args */
HDassert(f);
HDassert(oh);
HDassert(mesg);
/* Check if we should operate on the message */
if(adj_link) {
/* Free any space referred to in the file from this message */
if(H5O_delete_mesg(f, dxpl_id, mesg) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to delete file space for object header message")
} /* end if */
/* Free any native information */
H5O_msg_free_mesg(mesg);
/* Change message type to nil and zero it */
mesg->type = H5O_MSG_NULL;
HDassert(mesg->raw + mesg->raw_size <= (oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap));
HDmemset(mesg->raw, 0, mesg->raw_size);
/* Clear message flags */
mesg->flags = 0;
/* Indicate that the message was modified */
mesg->dirty = TRUE;
/* Check if chunk has a gap currently */
if(oh->chunk[mesg->chunkno].gap) {
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, mesg,
((oh->chunk[mesg->chunkno].image + oh->chunk[mesg->chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[mesg->chunkno].gap)),
oh->chunk[mesg->chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[mesg->chunkno].gap = 0;
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_release_mesg() */
/*-------------------------------------------------------------------------
*
* Function: H5O_move_msgs_forward
*
* Purpose: Move messages toward first chunk
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 17 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_move_msgs_forward(H5O_t *oh)
{
hbool_t packed_msg; /* Flag to indicate that messages were packed */
hbool_t did_packing = FALSE; /* Whether any messages were packed */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_move_msgs_forward)
/* check args */
HDassert(oh);
/* Loop until no messages packed */
/* (Double loop is not very efficient, but it would be some extra work to
* add a list of messages to each chunk -QAK)
*/
do {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned u; /* Local index variable */
/* Reset packed messages flag */
packed_msg = FALSE;
/* Scan through messages for messages that can be moved earlier in chunks */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
if(H5O_NULL_ID == curr_msg->type->id) {
H5O_chunk_t *chunk; /* Pointer to chunk that null message is in */
/* Check if null message is not last in chunk */
chunk = &(oh->chunk[curr_msg->chunkno]);
if((curr_msg->raw + curr_msg->raw_size)
!= ((chunk->image + chunk->size) - (H5O_SIZEOF_CHKSUM_OH(oh) + chunk->gap))) {
H5O_mesg_t *nonnull_msg; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Loop over messages again, looking for the message in the chunk after the null message */
for(v = 0, nonnull_msg = &oh->mesg[0]; v < oh->nmesgs; v++, nonnull_msg++) {
/* Locate message that is immediately after the null message */
if((curr_msg->chunkno == nonnull_msg->chunkno) &&
((curr_msg->raw + curr_msg->raw_size) == (nonnull_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)))) {
/* Don't swap messages if the second message is also a null message */
/* (We'll merge them together later, in another routine) */
if(H5O_NULL_ID != nonnull_msg->type->id) {
/* Copy raw data for non-null message to new location */
HDmemmove(curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh),
nonnull_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Adjust non-null message's offset in chunk */
nonnull_msg->raw = curr_msg->raw;
/* Adjust null message's offset in chunk */
curr_msg->raw = nonnull_msg->raw +
nonnull_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
/* Mark null message dirty */
/* (since we need to re-encode its message header) */
/* (also, marking this message dirty means we
* don't have to mark chunk as dirty)
*/
curr_msg->dirty = TRUE;
/* Set the flag to indicate that the null message
* was packed - if its not at the end its chunk,
* we'll move it again on the next pass.
*/
packed_msg = TRUE;
} /* end if */
/* Break out of loop */
break;
} /* end if */
} /* end for */
/* Should have been message after null message */
HDassert(v < oh->nmesgs);
} /* end if */
} /* end if */
else {
H5O_mesg_t *null_msg; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Loop over messages again, looking for large enough null message in earlier chunk */
for(v = 0, null_msg = &oh->mesg[0]; v < oh->nmesgs; v++, null_msg++) {
if(H5O_NULL_ID == null_msg->type->id && curr_msg->chunkno > null_msg->chunkno
&& curr_msg->raw_size <= null_msg->raw_size) {
unsigned old_chunkno; /* Old message information */
uint8_t *old_raw;
/* Keep old information about non-null message */
old_chunkno = curr_msg->chunkno;
old_raw = curr_msg->raw;
/* Copy raw data for non-null message to new chunk */
HDmemcpy(null_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh), curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh));
/* Mark null message's chunk as dirty, since the raw data image changed */
oh->chunk[null_msg->chunkno].dirty = TRUE;
/* Point non-null message at null message's space */
curr_msg->chunkno = null_msg->chunkno;
curr_msg->raw = null_msg->raw;
/* Change information for null message */
if(curr_msg->raw_size == null_msg->raw_size) {
/* Point null message at old non-null space */
/* (Instead of freeing it and allocating new message) */
null_msg->chunkno = old_chunkno;
null_msg->raw = old_raw;
/* Mark null message dirty */
null_msg->dirty = TRUE;
} /* end if */
else {
unsigned new_null_msg; /* Message index for new null message */
/* Check if null message is large enough to still exist */
if((null_msg->raw_size - curr_msg->raw_size) < (size_t)H5O_SIZEOF_MSGHDR_OH(oh)) {
size_t gap_size = null_msg->raw_size - curr_msg->raw_size; /* Size of gap produced */
/* Adjust the size of the null message being eliminated */
null_msg->raw_size = curr_msg->raw_size;
/* Add the gap to the chunk */
if(H5O_add_gap(oh, null_msg->chunkno, v, null_msg->raw + null_msg->raw_size, gap_size) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTINSERT, FAIL, "can't insert gap in chunk")
/* Re-use message # for new null message taking place of non-null message */
new_null_msg = v;
} /* end if */
else {
/* Adjust null message's size & offset */
null_msg->raw += curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
null_msg->raw_size -= curr_msg->raw_size + H5O_SIZEOF_MSGHDR_OH(oh);
/* Mark null message dirty */
null_msg->dirty = TRUE;
/* Create new null message for previous location of non-null message */
if(oh->nmesgs >= oh->alloc_nmesgs) {
if(H5O_alloc_msgs(oh, (size_t)1) < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "can't allocate more space for messages")
/* "Retarget" 'curr_msg' pointer into newly re-allocated array of messages */
curr_msg = &oh->mesg[u];
} /* end if */
/* Get message # for new null message */
new_null_msg = oh->nmesgs++;
} /* end else */
/* Initialize new null message to take over non-null message's location */
oh->mesg[new_null_msg].type = H5O_MSG_NULL;
oh->mesg[new_null_msg].dirty = TRUE;
oh->mesg[new_null_msg].native = NULL;
oh->mesg[new_null_msg].raw = old_raw;
oh->mesg[new_null_msg].raw_size = curr_msg->raw_size;
oh->mesg[new_null_msg].chunkno = old_chunkno;
/* Check for gap in new null message's chunk */
if(oh->chunk[old_chunkno].gap > 0) {
/* Eliminate the gap in the chunk */
if(H5O_eliminate_gap(oh, &oh->mesg[new_null_msg],
((oh->chunk[old_chunkno].image + oh->chunk[old_chunkno].size) - (H5O_SIZEOF_CHKSUM_OH(oh) + oh->chunk[old_chunkno].gap)),
oh->chunk[old_chunkno].gap) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTREMOVE, FAIL, "can't eliminate gap in chunk")
/* Set the gap size to zero for the chunk */
oh->chunk[old_chunkno].gap = 0;
} /* end if */
} /* end else */
/* Indicate that we packed messages */
packed_msg = TRUE;
/* Break out of loop */
/* (If it's possible to move message to even earlier chunk
* we'll get it on the next pass - QAK)
*/
break;
} /* end if */
} /* end for */
/* If we packed messages, get out of loop and start over */
/* (Don't know if this has any benefit one way or the other -QAK) */
if(packed_msg)
break;
} /* end else */
} /* end for */
/* If we did any packing, remember that */
if(packed_msg)
did_packing = TRUE;
} while(packed_msg);
/* Set return value */
ret_value = did_packing;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_move_msgs_forward() */
/*-------------------------------------------------------------------------
*
* Function: H5O_merge_null
*
* Purpose: Merge neighboring null messages in an object header
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 10 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_merge_null(H5O_t *oh)
{
hbool_t merged_msg; /* Flag to indicate that messages were merged */
hbool_t did_merging = FALSE; /* Whether any messages were merged */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5O_merge_null)
/* check args */
HDassert(oh != NULL);
/* Loop until no messages merged */
/* (Double loop is not very efficient, but it would be some extra work to add
* a list of messages to each chunk -QAK)
*/
do {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned u; /* Local index variable */
/* Reset merged messages flag */
merged_msg = FALSE;
/* Scan messages for adjacent null messages & merge them */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
if(H5O_NULL_ID == curr_msg->type->id) {
H5O_mesg_t *curr_msg2; /* Pointer to current message to operate on */
unsigned v; /* Local index variable */
/* Should be no gaps in chunk with null message */
HDassert(oh->chunk[curr_msg->chunkno].gap == 0);
/* Loop over messages again, looking for null message in same chunk */
for(v = 0, curr_msg2 = &oh->mesg[0]; v < oh->nmesgs; v++, curr_msg2++) {
if(u != v && H5O_NULL_ID == curr_msg2->type->id && curr_msg->chunkno == curr_msg2->chunkno) {
/* Check for second message after first message */
if((curr_msg->raw + curr_msg->raw_size) == (curr_msg2->raw - H5O_SIZEOF_MSGHDR_OH(oh))) {
/* Extend first null message length to cover second null message */
curr_msg->raw_size += (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
/* Message has been merged */
merged_msg = TRUE;
} /* end if */
/* Check for second message before first message */
else if((curr_msg->raw - H5O_SIZEOF_MSGHDR_OH(oh)) == (curr_msg2->raw + curr_msg2->raw_size)) {
/* Adjust first message address and extend length to cover second message */
curr_msg->raw -= (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
curr_msg->raw_size += (H5O_SIZEOF_MSGHDR_OH(oh) + curr_msg2->raw_size);
/* Message has been merged */
merged_msg = TRUE;
} /* end if */
/* Second message has been merged, delete it */
if(merged_msg) {
/* Release any information/memory for second message */
H5O_msg_free_mesg(curr_msg2);
/* Mark first message as dirty */
curr_msg->dirty = TRUE;
/* Remove second message from list of messages */
if(v < (oh->nmesgs - 1))
HDmemmove(&oh->mesg[v], &oh->mesg[v + 1], ((oh->nmesgs - 1) - v) * sizeof(H5O_mesg_t));
/* Decrement # of messages */
/* (Don't bother reducing size of message array for now -QAK) */
oh->nmesgs--;
/* Get out of loop */
break;
} /* end if */
} /* end if */
} /* end for */
/* Get out of loop if we merged messages */
if(merged_msg)
break;
} /* end if */
} /* end for */
/* If we did any merging, remember that */
if(merged_msg)
did_merging = TRUE;
} while(merged_msg);
/* Set return value */
ret_value = did_merging;
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_merge_null() */
/*-------------------------------------------------------------------------
*
* Function: H5O_remove_empty_chunks
*
* Purpose: Attempt to eliminate empty chunks from object header.
*
* This examines a chunk to see if it's empty
* and removes it (and the continuation message that points to it)
* from the object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 17 2005
*
*-------------------------------------------------------------------------
*/
static htri_t
H5O_remove_empty_chunks(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
{
hbool_t deleted_chunk; /* Whether to a chunk was deleted */
hbool_t did_deleting = FALSE; /* Whether any chunks were deleted */
htri_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT(H5O_remove_empty_chunks)
/* check args */
HDassert(oh != NULL);
/* Loop until no chunks are freed */
do {
H5O_mesg_t *null_msg; /* Pointer to null message found */
H5O_mesg_t *cont_msg; /* Pointer to continuation message found */
unsigned u, v; /* Local index variables */
/* Reset 'chunk deleted' flag */
deleted_chunk = FALSE;
/* Scan messages for null messages that fill an entire chunk */
for(u = 0, null_msg = &oh->mesg[0]; u < oh->nmesgs; u++, null_msg++) {
/* If a null message takes up an entire object header chunk (and
* its not the "base" chunk), delete that chunk from object header
*/
if(H5O_NULL_ID == null_msg->type->id && null_msg->chunkno > 0 &&
(H5O_SIZEOF_MSGHDR_OH(oh) + null_msg->raw_size)
== (oh->chunk[null_msg->chunkno].size - H5O_SIZEOF_CHKHDR_OH(oh))) {
H5O_mesg_t *curr_msg; /* Pointer to current message to operate on */
unsigned null_msg_no; /* Message # for null message */
unsigned deleted_chunkno; /* Chunk # to delete */
/* Locate continuation message that points to chunk */
for(v = 0, cont_msg = &oh->mesg[0]; v < oh->nmesgs; v++, cont_msg++) {
if(H5O_CONT_ID == cont_msg->type->id) {
/* Decode current continuation message if necessary */
if(NULL == cont_msg->native) {
HDassert(H5O_MSG_CONT->decode);
cont_msg->native = (H5O_MSG_CONT->decode)(f, dxpl_id, 0, cont_msg->raw);
if(NULL == cont_msg->native)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDECODE, FAIL, "unable to decode message")
} /* end if */
/* Check for correct chunk to delete */
if(oh->chunk[null_msg->chunkno].addr == ((H5O_cont_t *)(cont_msg->native))->addr)
break;
} /* end if */
} /* end for */
/* Must be a continuation message that points to chunk containing null message */
HDassert(v < oh->nmesgs);
HDassert(cont_msg);
/* Initialize information about null message */
null_msg_no = u;
deleted_chunkno = null_msg->chunkno;
/* Convert continuation message into a null message */
if(H5O_release_mesg(f, dxpl_id, oh, cont_msg, TRUE) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTDELETE, FAIL, "unable to convert into null message")
/*
* Remove chunk from object header's data structure
*/
/* Free memory for chunk image */
H5FL_BLK_FREE(chunk_image, oh->chunk[null_msg->chunkno].image);
/* Remove chunk from list of chunks */
if(null_msg->chunkno < (oh->nchunks - 1))
HDmemmove(&oh->chunk[null_msg->chunkno], &oh->chunk[null_msg->chunkno + 1], ((oh->nchunks - 1) - null_msg->chunkno) * sizeof(H5O_chunk_t));
/* Decrement # of chunks */
/* (Don't bother reducing size of chunk array for now -QAK) */
oh->nchunks--;
/*
* Delete null message (in empty chunk that was be freed) from list of messages
*/
/* Release any information/memory for message */
H5O_msg_free_mesg(null_msg);
/* Remove null message from list of messages */
if(null_msg_no < (oh->nmesgs - 1))
HDmemmove(&oh->mesg[null_msg_no], &oh->mesg[null_msg_no + 1], ((oh->nmesgs - 1) - null_msg_no) * sizeof(H5O_mesg_t));
/* Decrement # of messages */
/* (Don't bother reducing size of message array for now -QAK) */
oh->nmesgs--;
/* Adjust chunk # for messages in chunks after deleted chunk */
for(u = 0, curr_msg = &oh->mesg[0]; u < oh->nmesgs; u++, curr_msg++) {
HDassert(curr_msg->chunkno != deleted_chunkno);
if(curr_msg->chunkno > deleted_chunkno)
curr_msg->chunkno--;
} /* end for */
/* Found chunk to delete */
deleted_chunk = TRUE;
break;
} /* end if */
} /* end for */
/* If we deleted any chunks, remember that */
if(deleted_chunk)
did_deleting = TRUE;
} while(deleted_chunk);
/* Set return value */
ret_value = did_deleting;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_remove_empty_chunks() */
/*-------------------------------------------------------------------------
*
* Function: H5O_condense_header
*
* Purpose: Attempt to eliminate empty chunks from object header.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* koziol@ncsa.uiuc.edu
* Oct 4 2005
*
*-------------------------------------------------------------------------
*/
herr_t
H5O_condense_header(H5F_t *f, H5O_t *oh, hid_t dxpl_id)
{
hbool_t rescan_header; /* Whether to rescan header */
htri_t result; /* Result from packing/merging/etc */
herr_t ret_value = SUCCEED; /* return value */
FUNC_ENTER_NOAPI(H5O_condense_header, FAIL)
/* check args */
HDassert(oh != NULL);
/* Loop until no changed to the object header messages & chunks */
do {
/* Reset 'rescan chunks' flag */
rescan_header = FALSE;
/* Scan for messages that can be moved earlier in chunks */
result = H5O_move_msgs_forward(oh);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't move header messages forward")
if(result > 0)
rescan_header = TRUE;
/* Scan for adjacent null messages & merge them */
result = H5O_merge_null(oh);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't pack null header messages")
if(result > 0)
rescan_header = TRUE;
/* Scan for empty chunks to remove */
result = H5O_remove_empty_chunks(f, oh, dxpl_id);
if(result < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTPACK, FAIL, "can't remove empty chunk")
if(result > 0)
rescan_header = TRUE;
} while(rescan_header);
#ifdef H5O_DEBUG
H5O_assert(oh);
#endif /* H5O_DEBUG */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5O_condense_header() */
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