1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
|
/****************************************************************************
* NCSA HDF *
* Software Development Group *
* National Center for Supercomputing Applications *
* University of Illinois at Urbana-Champaign *
* 605 E. Springfield, Champaign IL 61820 *
* *
* For conditions of distribution and use, see the accompanying *
* hdf/COPYING file. *
* *
****************************************************************************/
#ifdef RCSID
static char RcsId[] = "@(#)$Revision$";
#endif
/* $Id$ */
#define H5A_PACKAGE /*prevent warning from including H5Tpkg.h */
#include <H5private.h>
#include <H5Eprivate.h>
#include <H5FLprivate.h> /*Free Lists */
#include <H5Gprivate.h>
#include <H5MMprivate.h>
#include <H5Oprivate.h>
#include <H5Apkg.h>
#define PABLO_MASK H5O_attr_mask
/* PRIVATE PROTOTYPES */
static herr_t H5O_attr_encode (H5F_t *f, uint8_t *p, const void *mesg);
static void *H5O_attr_decode (H5F_t *f, const uint8_t *p, H5O_shared_t *sh);
static void *H5O_attr_copy (const void *_mesg, void *_dest);
static size_t H5O_attr_size (H5F_t *f, const void *_mesg);
static herr_t H5O_attr_reset (void *_mesg);
static herr_t H5O_attr_debug (H5F_t *f, const void *_mesg,
FILE * stream, intn indent, intn fwidth);
/* This message derives from H5O */
const H5O_class_t H5O_ATTR[1] = {{
H5O_ATTR_ID, /* message id number */
"attribute", /* message name for debugging */
sizeof(H5A_t), /* native message size */
H5O_attr_decode, /* decode message */
H5O_attr_encode, /* encode message */
H5O_attr_copy, /* copy the native value */
H5O_attr_size, /* size of raw message */
H5O_attr_reset, /* reset method */
NULL, /* default free method */
NULL, /* get share method */
NULL, /* set share method */
H5O_attr_debug, /* debug the message */
}};
#define H5O_ATTR_VERSION 1
/* Interface initialization */
static intn interface_initialize_g = 0;
#define INTERFACE_INIT NULL
/* Declare external the free list for H5S_t's */
H5FL_EXTERN(H5S_t);
/* Declare external the free list for H5S_simple_t's */
H5FL_EXTERN(H5S_simple_t);
/*--------------------------------------------------------------------------
NAME
H5O_attr_decode
PURPOSE
Decode a attribute message and return a pointer to a memory struct
with the decoded information
USAGE
void *H5O_attr_decode(f, raw_size, p)
H5F_t *f; IN: pointer to the HDF5 file struct
size_t raw_size; IN: size of the raw information buffer
const uint8_t *p; IN: the raw information buffer
RETURNS
Pointer to the new message in native order on success, NULL on failure
DESCRIPTION
This function decodes the "raw" disk form of a attribute message
into a struct in memory native format. The struct is allocated within this
function using malloc() and is returned to the caller.
*
* Modifications:
* Robb Matzke, 17 Jul 1998
* Added padding for alignment.
*
* Robb Matzke, 20 Jul 1998
* Added a version number at the beginning.
--------------------------------------------------------------------------*/
static void *
H5O_attr_decode(H5F_t *f, const uint8_t *p, H5O_shared_t UNUSED *sh)
{
H5A_t *attr = NULL;
H5S_simple_t *simple; /*simple dimensionality information */
size_t name_len; /*attribute name length */
intn version; /*message version number*/
FUNC_ENTER(H5O_attr_decode, NULL);
/* check args */
assert(f);
assert(p);
if (NULL==(attr = H5MM_calloc(sizeof(H5A_t)))) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
/* Version number */
version = *p++;
if (version!=H5O_ATTR_VERSION) {
HRETURN_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL,
"bad version number for attribute message");
}
/* Reserved */
p++;
/*
* Decode the sizes of the parts of the attribute. The sizes stored in
* the file are exact but the parts are aligned on 8-byte boundaries.
*/
UINT16DECODE(p, name_len); /*including null*/
UINT16DECODE(p, attr->dt_size);
UINT16DECODE(p, attr->ds_size);
/* Decode and store the name */
if (NULL==(attr->name=H5MM_malloc(name_len))) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
HDmemcpy(attr->name,p,name_len);
p += H5O_ALIGN(name_len); /* advance the memory pointer */
/* decode the attribute datatype */
if((attr->dt=(H5O_DTYPE->decode)(f,p,NULL))==NULL) {
HRETURN_ERROR(H5E_ATTR, H5E_CANTDECODE, NULL,
"can't decode attribute datatype");
}
p += H5O_ALIGN(attr->dt_size);
/* decode the attribute dataspace */
if (NULL==(attr->ds = H5FL_ALLOC(H5S_t,1))) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
if((simple=(H5O_SDSPACE->decode)(f,p,NULL))!=NULL) {
attr->ds->extent.type = H5S_SIMPLE;
HDmemcpy(&(attr->ds->extent.u.simple),simple, sizeof(H5S_simple_t));
H5FL_FREE(H5S_simple_t,simple);
} else {
attr->ds->extent.type = H5S_SCALAR;
}
p += H5O_ALIGN(attr->ds_size);
/* Compute the size of the data */
attr->data_size=H5S_get_simple_extent_npoints(attr->ds)*H5T_get_size(attr->dt);
/* Go get the data */
if (NULL==(attr->data = H5MM_malloc(attr->data_size))) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL,
"memory allocation failed");
}
HDmemcpy(attr->data,p,attr->data_size);
/* Indicate that the fill values aren't to be written out */
attr->initialized=1;
#ifdef LOTSLATER
if (hobj) {
attr->sh_heap = *hobj;
attr->sh_file = f;
}
#endif
FUNC_LEAVE(attr);
}
/*--------------------------------------------------------------------------
NAME
H5O_attr_encode
PURPOSE
Encode a simple attribute message
USAGE
herr_t H5O_attr_encode(f, raw_size, p, mesg)
H5F_t *f; IN: pointer to the HDF5 file struct
const uint8 *p; IN: the raw information buffer
const void *mesg; IN: Pointer to the simple datatype struct
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
This function encodes the native memory form of the attribute
message in the "raw" disk form.
*
* Modifications:
* Robb Matzke, 17 Jul 1998
* Added padding for alignment.
*
* Robb Matzke, 20 Jul 1998
* Added a version number at the beginning.
--------------------------------------------------------------------------*/
static herr_t
H5O_attr_encode(H5F_t *f, uint8_t *p, const void *mesg)
{
const H5A_t *attr = (const H5A_t *) mesg;
size_t name_len; /* Attribute name length */
FUNC_ENTER(H5O_attr_encode, FAIL);
/* check args */
assert(f);
assert(p);
assert(attr);
/* Version */
*p++ = H5O_ATTR_VERSION;
/* Reserved */
*p++ = 0;
/*
* Encode the lengths of the various parts of the attribute message. The
* encoded lengths are exact but we pad each part except the data to be a
* multiple of eight bytes.
*/
name_len = HDstrlen(attr->name)+1;
UINT16ENCODE(p, name_len);
UINT16ENCODE(p, attr->dt_size);
UINT16ENCODE(p, attr->ds_size);
/*
* Write the name including null terminator padded to the correct number
* of bytes.
*/
HDmemcpy(p, attr->name, name_len);
HDmemset(p+name_len, 0, H5O_ALIGN(name_len)-name_len);
p += H5O_ALIGN(name_len);
/* encode the attribute datatype */
if((H5O_DTYPE->encode)(f,p,attr->dt)<0) {
HRETURN_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL,
"can't encode attribute datatype");
}
HDmemset(p+attr->dt_size, 0, H5O_ALIGN(attr->dt_size)-attr->dt_size);
p += H5O_ALIGN(attr->dt_size);
/* encode the attribute dataspace */
if((H5O_SDSPACE->encode)(f,p,&(attr->ds->extent.u.simple))<0) {
HRETURN_ERROR(H5E_ATTR, H5E_CANTENCODE, FAIL,
"can't encode attribute dataspace");
}
HDmemset(p+attr->ds_size, 0, H5O_ALIGN(attr->ds_size)-attr->ds_size);
p += H5O_ALIGN(attr->ds_size);
/* Store attribute data */
HDmemcpy(p,attr->data,attr->data_size);
FUNC_LEAVE(SUCCEED);
}
/*--------------------------------------------------------------------------
NAME
H5O_attr_copy
PURPOSE
Copies a message from MESG to DEST, allocating DEST if necessary.
USAGE
void *H5O_attr_copy(mesg, dest)
const void *mesg; IN: Pointer to the source attribute struct
const void *dest; IN: Pointer to the destination attribute struct
RETURNS
Pointer to DEST on success, NULL on failure
DESCRIPTION
This function copies a native (memory) attribute message,
allocating the destination structure if necessary.
--------------------------------------------------------------------------*/
static void *
H5O_attr_copy(const void *_src, void *_dst)
{
const H5A_t *src = (const H5A_t *) _src;
H5A_t *dst = NULL;
FUNC_ENTER(H5O_attr_copy, NULL);
/* check args */
assert(src);
/* copy */
if (NULL == (dst = H5A_copy(src))) {
HRETURN_ERROR(H5E_ATTR, H5E_CANTINIT, NULL, "can't copy attribute");
}
/* was result already allocated? */
if (_dst) {
*((H5A_t *) _dst) = *dst;
H5MM_xfree(dst);
dst = (H5A_t *) _dst;
}
FUNC_LEAVE((void *) dst);
}
/*--------------------------------------------------------------------------
NAME
H5O_attr_size
PURPOSE
Return the raw message size in bytes
USAGE
size_t H5O_attr_size(f, mesg)
H5F_t *f; IN: pointer to the HDF5 file struct
const void *mesg; IN: Pointer to the source attribute struct
RETURNS
Size of message on success, 0 on failure
DESCRIPTION
This function returns the size of the raw attribute message on
success. (Not counting the message type or size fields, only the data
portion of the message). It doesn't take into account alignment.
*
* Modified:
* Robb Matzke, 17 Jul 1998
* Added padding between message parts for alignment.
--------------------------------------------------------------------------*/
static size_t
H5O_attr_size(H5F_t UNUSED *f, const void *mesg)
{
size_t ret_value = 0;
size_t name_len;
const H5A_t *attr = (const H5A_t *) mesg;
FUNC_ENTER(H5O_attr_size, 0);
assert(attr);
name_len = HDstrlen(attr->name)+1;
ret_value = 2 + /*name size inc. null */
2 + /*type size */
2 + /*space size */
2 + /*reserved */
H5O_ALIGN(name_len) + /*attribute name */
H5O_ALIGN(attr->dt_size) + /*data type */
H5O_ALIGN(attr->ds_size) + /*data space */
attr->data_size; /*the data itself */
FUNC_LEAVE(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_attr_reset
*
* Purpose: Frees resources within a attribute message, but doesn't free
* the message itself.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, December 9, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_attr_reset(void *_mesg)
{
H5A_t *attr = (H5A_t *) _mesg;
H5A_t *tmp = NULL;
FUNC_ENTER(H5O_attr_reset, FAIL);
if (attr) {
if (NULL==(tmp = H5MM_malloc(sizeof(H5A_t)))) {
HRETURN_ERROR (H5E_RESOURCE, H5E_NOSPACE, FAIL,
"memory allocation failed");
}
HDmemcpy(tmp,attr,sizeof(H5A_t));
H5A_close(tmp);
HDmemset(attr, 0, sizeof(H5A_t));
}
FUNC_LEAVE(SUCCEED);
}
/*--------------------------------------------------------------------------
NAME
H5O_attr_debug
PURPOSE
Prints debugging information for an attribute message
USAGE
void *H5O_attr_debug(f, mesg, stream, indent, fwidth)
H5F_t *f; IN: pointer to the HDF5 file struct
const void *mesg; IN: Pointer to the source attribute struct
FILE *stream; IN: Pointer to the stream for output data
intn indent; IN: Amount to indent information by
intn fwidth; IN: Field width (?)
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
This function prints debugging output to the stream passed as a
parameter.
--------------------------------------------------------------------------*/
static herr_t
H5O_attr_debug(H5F_t *f, const void *_mesg, FILE * stream, intn indent,
intn fwidth)
{
const H5A_t *mesg = (const H5A_t *)_mesg;
FUNC_ENTER(H5O_attr_debug, FAIL);
/* check args */
assert(f);
assert(stream);
assert(indent >= 0);
assert(fwidth >= 0);
fprintf(stream, "%*s%-*s \"%s\"\n", indent, "", fwidth,
"Name:",
mesg->name);
fprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Initialized:",
(unsigned int)mesg->initialized);
fprintf(stream, "%*s%-*s %u\n", indent, "", fwidth,
"Opened:",
(unsigned int)mesg->ent_opened);
fprintf(stream, "%*sSymbol table entry...\n", indent, "");
H5G_ent_debug(f, &(mesg->ent), stream, indent+3, MAX(0, fwidth-3), NULL);
fprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
"Data type size:",
(unsigned long)(mesg->dt_size));
fprintf(stream, "%*sData type...\n", indent, "");
(H5O_DTYPE->debug)(f, mesg->dt, stream, indent+3, MAX(0, fwidth-3));
fprintf(stream, "%*s%-*s %lu\n", indent, "", fwidth,
"Data space size:",
(unsigned long)(mesg->ds_size));
fprintf(stream, "%*sData space...\n", indent, "");
H5S_debug(f, mesg->ds, stream, indent+3, MAX(0, fwidth-3));
FUNC_LEAVE(SUCCEED);
}
|