1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Robb Matzke <matzke@llnl.gov>
* Tuesday, November 25, 1997
*/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
#include "H5private.h"
#include "H5Eprivate.h"
#include "H5Fpkg.h"
#include "H5HLprivate.h"
#include "H5MMprivate.h"
#include "H5Opkg.h" /* Object header functions */
#define PABLO_MASK H5O_efl_mask
/* PRIVATE PROTOTYPES */
static void *H5O_efl_decode(H5F_t *f, hid_t dxpl_id, const uint8_t *p, H5O_shared_t *sh);
static herr_t H5O_efl_encode(H5F_t *f, uint8_t *p, const void *_mesg);
static void *H5O_efl_copy(const void *_mesg, void *_dest);
static size_t H5O_efl_size(H5F_t *f, const void *_mesg);
static herr_t H5O_efl_reset(void *_mesg);
static herr_t H5O_efl_debug(H5F_t *f, hid_t dxpl_id, const void *_mesg, FILE * stream,
int indent, int fwidth);
static herr_t H5O_efl_read (const H5O_efl_t *efl, haddr_t addr, size_t size,
uint8_t *buf);
static herr_t H5O_efl_write(const H5O_efl_t *efl, haddr_t addr, size_t size,
const uint8_t *buf);
/* This message derives from H5O */
const H5O_class_t H5O_EFL[1] = {{
H5O_EFL_ID, /*message id number */
"external file list", /*message name for debugging */
sizeof(H5O_efl_t), /*native message size */
H5O_efl_decode, /*decode message */
H5O_efl_encode, /*encode message */
H5O_efl_copy, /*copy native value */
H5O_efl_size, /*size of message on disk */
H5O_efl_reset, /*reset method */
NULL, /* free method */
NULL, /* file delete method */
NULL, /*get share method */
NULL, /*set share method */
H5O_efl_debug, /*debug the message */
}};
#define H5O_EFL_VERSION 1
/* Interface initialization */
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
/*-------------------------------------------------------------------------
* Function: H5O_efl_decode
*
* Purpose: Decode an external file list message and return a pointer to
* the message (and some other data).
*
* Return: Success: Ptr to a new message struct.
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
* Robb Matzke, 1998-07-20
* Rearranged the message to add a version number near the beginning.
*
*-------------------------------------------------------------------------
*/
static void *
H5O_efl_decode(H5F_t *f, hid_t dxpl_id, const uint8_t *p, H5O_shared_t UNUSED *sh)
{
H5O_efl_t *mesg = NULL;
int i, version;
const char *s = NULL;
void *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_decode, NULL);
/* Check args */
assert(f);
assert(p);
assert (!sh);
if (NULL==(mesg = H5MM_calloc(sizeof(H5O_efl_t))))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* Version */
version = *p++;
if (version!=H5O_EFL_VERSION)
HGOTO_ERROR(H5E_OHDR, H5E_CANTLOAD, NULL, "bad version number for external file list message");
/* Reserved */
p += 3;
/* Number of slots */
UINT16DECODE(p, mesg->nalloc);
assert(mesg->nalloc>0);
UINT16DECODE(p, mesg->nused);
assert(mesg->nused <= mesg->nalloc);
/* Heap address */
H5F_addr_decode(f, &p, &(mesg->heap_addr));
#ifndef NDEBUG
assert (H5F_addr_defined(mesg->heap_addr));
s = H5HL_peek (f, dxpl_id, mesg->heap_addr, 0);
assert (s && !*s);
#endif
/* Decode the file list */
mesg->slot = H5MM_calloc(mesg->nalloc*sizeof(H5O_efl_entry_t));
if (NULL==mesg->slot)
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
for (i=0; i<mesg->nused; i++) {
/* Name */
H5F_DECODE_LENGTH (f, p, mesg->slot[i].name_offset);
s = H5HL_peek(f, dxpl_id, mesg->heap_addr, mesg->slot[i].name_offset);
assert (s && *s);
mesg->slot[i].name = H5MM_xstrdup (s);
/* File offset */
H5F_DECODE_LENGTH (f, p, mesg->slot[i].offset);
/* Size */
H5F_DECODE_LENGTH (f, p, mesg->slot[i].size);
assert (mesg->slot[i].size>0);
}
/* Set return value */
ret_value=mesg;
done:
if(ret_value==NULL) {
if(mesg!=NULL)
H5MM_xfree (mesg);
} /* end if */
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_encode
*
* Purpose: Encodes a message.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
* Robb Matzke, 1998-07-20
* Rearranged the message to add a version number near the beginning.
*
* Robb Matzke, 1999-10-14
* Entering the name into the local heap happens when the dataset is
* created. Otherwise we could end up in infinite recursion if the heap
* happens to hash to the same cache slot as the object header.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_efl_encode(H5F_t *f, uint8_t *p, const void *_mesg)
{
const H5O_efl_t *mesg = (const H5O_efl_t *)_mesg;
int i;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_encode, FAIL);
/* check args */
assert(f);
assert(mesg);
assert(p);
/* Version */
*p++ = H5O_EFL_VERSION;
/* Reserved */
*p++ = 0;
*p++ = 0;
*p++ = 0;
/* Number of slots */
assert (mesg->nalloc>0);
UINT16ENCODE(p, mesg->nused); /*yes, twice*/
assert (mesg->nused>0 && mesg->nused<=mesg->nalloc);
UINT16ENCODE(p, mesg->nused);
/* Heap address */
assert (H5F_addr_defined(mesg->heap_addr));
H5F_addr_encode(f, &p, mesg->heap_addr);
/* Encode file list */
for (i=0; i<mesg->nused; i++) {
/*
* The name should have been added to the heap when the dataset was
* created.
*/
assert(mesg->slot[i].name_offset);
H5F_ENCODE_LENGTH (f, p, mesg->slot[i].name_offset);
H5F_ENCODE_LENGTH (f, p, mesg->slot[i].offset);
H5F_ENCODE_LENGTH (f, p, mesg->slot[i].size);
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_copy
*
* Purpose: Copies a message from _MESG to _DEST, allocating _DEST if
* necessary.
*
* Return: Success: Ptr to _DEST
*
* Failure: NULL
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void *
H5O_efl_copy(const void *_mesg, void *_dest)
{
const H5O_efl_t *mesg = (const H5O_efl_t *) _mesg;
H5O_efl_t *dest = (H5O_efl_t *) _dest;
int i;
void *ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_copy, NULL);
/* check args */
assert(mesg);
if (!dest) {
if (NULL==(dest = H5MM_calloc(sizeof(H5O_efl_t))) ||
NULL==(dest->slot=H5MM_malloc(mesg->nalloc* sizeof(H5O_efl_entry_t))))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
} else if (dest->nalloc<mesg->nalloc) {
H5MM_xfree(dest->slot);
if (NULL==(dest->slot = H5MM_malloc(mesg->nalloc*
sizeof(H5O_efl_entry_t))))
HGOTO_ERROR (H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
}
dest->heap_addr = mesg->heap_addr;
dest->nalloc = mesg->nalloc;
dest->nused = mesg->nused;
for (i = 0; i < mesg->nused; i++) {
dest->slot[i] = mesg->slot[i];
dest->slot[i].name = H5MM_xstrdup (mesg->slot[i].name);
}
/* Set return value */
ret_value=dest;
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_size
*
* Purpose: Returns the size of the raw message in bytes not counting the
* message type or size fields, but only the data fields. This
* function doesn't take into account message alignment. This
* function doesn't count unused slots.
*
* Return: Success: Message data size in bytes.
*
* Failure: 0
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static size_t
H5O_efl_size(H5F_t *f, const void *_mesg)
{
const H5O_efl_t *mesg = (const H5O_efl_t *) _mesg;
size_t ret_value = 0;
FUNC_ENTER_NOAPI(H5O_efl_size, 0);
/* check args */
assert(f);
assert(mesg);
ret_value = H5F_SIZEOF_ADDR(f) + /*heap address */
2 + /*slots allocated*/
2 + /*num slots used*/
4 + /*reserved */
mesg->nused * (H5F_SIZEOF_SIZE(f) + /*name offset */
H5F_SIZEOF_SIZE(f) + /*file offset */
H5F_SIZEOF_SIZE(f)); /*file size */
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_reset
*
* Purpose: Frees internal pointers and resets the message to an
* initialial state.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_efl_reset(void *_mesg)
{
H5O_efl_t *mesg = (H5O_efl_t *) _mesg;
int i;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_reset, FAIL);
/* check args */
assert(mesg);
/* reset */
for (i=0; i<mesg->nused; i++)
mesg->slot[i].name = H5MM_xfree (mesg->slot[i].name);
mesg->heap_addr = HADDR_UNDEF;
mesg->nused = mesg->nalloc = 0;
if(mesg->slot)
mesg->slot = H5MM_xfree(mesg->slot);
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_total_size
*
* Purpose: Return the total size of the external file list by summing
* the sizes of all of the files.
*
* Return: Success: Total reserved size for external data.
*
* Failure: 0
*
* Programmer: Robb Matzke
* Tuesday, March 3, 1998
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hsize_t
H5O_efl_total_size (H5O_efl_t *efl)
{
int i;
hsize_t ret_value = 0, tmp;
FUNC_ENTER_NOAPI(H5O_efl_total_size, 0);
if (efl->nused>0 &&
H5O_EFL_UNLIMITED==efl->slot[efl->nused-1].size) {
ret_value = H5O_EFL_UNLIMITED;
} else {
for (i=0; i<efl->nused; i++, ret_value=tmp) {
tmp = ret_value + efl->slot[i].size;
if (tmp<=ret_value)
HGOTO_ERROR (H5E_EFL, H5E_OVERFLOW, 0, "total external storage size overflowed");
}
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_read
*
* Purpose: Reads data from an external file list. It is an error to
* read past the logical end of file, but reading past the end
* of any particular member of the external file list results in
* zeros.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, March 4, 1998
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
static herr_t
H5O_efl_read (const H5O_efl_t *efl, haddr_t addr, size_t size, uint8_t *buf)
{
int i, fd=-1;
size_t to_read;
#ifndef NDEBUG
hsize_t tempto_read;
#endif /* NDEBUG */
hsize_t skip=0;
haddr_t cur;
ssize_t n;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_read, FAIL);
/* Check args */
assert (efl && efl->nused>0);
assert (H5F_addr_defined (addr));
assert (size < SIZET_MAX);
assert (buf || 0==size);
/* Find the first efl member from which to read */
for (i=0, cur=0; i<efl->nused; i++) {
if (H5O_EFL_UNLIMITED==efl->slot[i].size ||
addr < cur+efl->slot[i].size) {
skip = addr - cur;
break;
}
cur += efl->slot[i].size;
}
/* Read the data */
while (size) {
if (i>=efl->nused)
HGOTO_ERROR (H5E_EFL, H5E_OVERFLOW, FAIL, "read past logical end of file");
if (H5F_OVERFLOW_HSIZET2OFFT (efl->slot[i].offset+skip))
HGOTO_ERROR (H5E_EFL, H5E_OVERFLOW, FAIL, "external file address overflowed");
if ((fd=HDopen (efl->slot[i].name, O_RDONLY, 0))<0)
HGOTO_ERROR (H5E_EFL, H5E_CANTOPENFILE, FAIL, "unable to open external raw data file");
if (HDlseek (fd, (off_t)(efl->slot[i].offset+skip), SEEK_SET)<0)
HGOTO_ERROR (H5E_EFL, H5E_SEEKERROR, FAIL, "unable to seek in external raw data file");
#ifndef NDEBUG
tempto_read = MIN(efl->slot[i].size-skip,(hsize_t)size);
H5_CHECK_OVERFLOW(tempto_read,hsize_t,size_t);
to_read = (size_t)tempto_read;
#else /* NDEBUG */
to_read = MIN((size_t)(efl->slot[i].size-skip), size);
#endif /* NDEBUG */
if ((n=HDread (fd, buf, to_read))<0) {
HGOTO_ERROR (H5E_EFL, H5E_READERROR, FAIL, "read error in external raw data file");
} else if ((size_t)n<to_read) {
HDmemset (buf+n, 0, to_read-n);
}
HDclose (fd);
fd = -1;
size -= to_read;
buf += to_read;
skip = 0;
i++;
}
done:
if (fd>=0)
HDclose (fd);
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_write
*
* Purpose: Writes data to an external file list. It is an error to
* write past the logical end of file, but writing past the end
* of any particular member of the external file list just
* extends that file.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Wednesday, March 4, 1998
*
* Modifications:
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*-------------------------------------------------------------------------
*/
static herr_t
H5O_efl_write (const H5O_efl_t *efl, haddr_t addr, size_t size, const uint8_t *buf)
{
int i, fd=-1;
size_t to_write;
#ifndef NDEBUG
hsize_t tempto_write;
#endif /* NDEBUG */
haddr_t cur;
hsize_t skip=0;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_write, FAIL);
/* Check args */
assert (efl && efl->nused>0);
assert (H5F_addr_defined (addr));
assert (size < SIZET_MAX);
assert (buf || 0==size);
/* Find the first efl member in which to write */
for (i=0, cur=0; i<efl->nused; i++) {
if (H5O_EFL_UNLIMITED==efl->slot[i].size ||
addr < cur+efl->slot[i].size) {
skip = addr - cur;
break;
}
cur += efl->slot[i].size;
}
/* Write the data */
while (size) {
if (i>=efl->nused)
HGOTO_ERROR (H5E_EFL, H5E_OVERFLOW, FAIL, "write past logical end of file");
if (H5F_OVERFLOW_HSIZET2OFFT (efl->slot[i].offset+skip))
HGOTO_ERROR (H5E_EFL, H5E_OVERFLOW, FAIL, "external file address overflowed");
if ((fd=HDopen (efl->slot[i].name, O_CREAT|O_RDWR, 0666))<0) {
if (HDaccess (efl->slot[i].name, F_OK)<0) {
HGOTO_ERROR (H5E_EFL, H5E_CANTOPENFILE, FAIL, "external raw data file does not exist");
} else {
HGOTO_ERROR (H5E_EFL, H5E_CANTOPENFILE, FAIL, "unable to open external raw data file");
}
}
if (HDlseek (fd, (off_t)(efl->slot[i].offset+skip), SEEK_SET)<0)
HGOTO_ERROR (H5E_EFL, H5E_SEEKERROR, FAIL, "unable to seek in external raw data file");
#ifndef NDEBUG
tempto_write = MIN(efl->slot[i].size-skip,(hsize_t)size);
H5_CHECK_OVERFLOW(tempto_write,hsize_t,size_t);
to_write = (size_t)tempto_write;
#else /* NDEBUG */
to_write = MIN((size_t)(efl->slot[i].size-skip), size);
#endif /* NDEBUG */
if ((size_t)HDwrite (fd, buf, to_write)!=to_write)
HGOTO_ERROR (H5E_EFL, H5E_READERROR, FAIL, "write error in external raw data file");
HDclose (fd);
fd = -1;
size -= to_write;
buf += to_write;
skip = 0;
i++;
}
done:
if (fd>=0)
HDclose (fd);
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5O_efl_readvv
*
* Purpose: Reads data from an external file list. It is an error to
* read past the logical end of file, but reading past the end
* of any particular member of the external file list results in
* zeros.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, May 7, 2003
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
ssize_t
H5O_efl_readvv(const H5O_efl_t *efl,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
void *_buf)
{
unsigned char *buf; /* Pointer to buffer to write */
haddr_t addr; /* Actual address to read */
size_t size; /* Size of sequence in bytes */
size_t u; /* Counting variable */
size_t v; /* Counting variable */
ssize_t ret_value=0; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_readvv, FAIL);
/* Check args */
assert (efl && efl->nused>0);
assert (buf);
/* Work through all the sequences */
for(u=*dset_curr_seq, v=*mem_curr_seq; u<dset_max_nseq && v<mem_max_nseq; ) {
/* Choose smallest buffer to write */
if(mem_len_arr[v]<dset_len_arr[u])
size=mem_len_arr[v];
else
size=dset_len_arr[u];
/* Compute offset on disk */
addr=dset_offset_arr[u];
/* Compute offset in memory */
buf = (unsigned char *)_buf + mem_offset_arr[v];
/* Read data */
if (H5O_efl_read(efl, addr, size, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "block write failed");
/* Update memory information */
mem_len_arr[v]-=size;
mem_offset_arr[v]+=size;
if(mem_len_arr[v]==0)
v++;
/* Update file information */
dset_len_arr[u]-=size;
dset_offset_arr[u]+=size;
if(dset_len_arr[u]==0)
u++;
/* Increment number of bytes copied */
ret_value+=size;
} /* end for */
/* Update current sequence vectors */
*dset_curr_seq=u;
*mem_curr_seq=v;
done:
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5O_efl_readvv() */
/*-------------------------------------------------------------------------
* Function: H5O_efl_writevv
*
* Purpose: Writes data to an external file list. It is an error to
* write past the logical end of file, but writing past the end
* of any particular member of the external file list just
* extends that file.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Friday, May 2, 2003
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
ssize_t
H5O_efl_writevv(const H5O_efl_t *efl,
size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[],
const void *_buf)
{
const unsigned char *buf; /* Pointer to buffer to write */
haddr_t addr; /* Actual address to read */
size_t size; /* Size of sequence in bytes */
size_t u; /* Counting variable */
size_t v; /* Counting variable */
ssize_t ret_value=0; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_writevv, FAIL);
/* Check args */
assert (efl && efl->nused>0);
assert (buf);
/* Work through all the sequences */
for(u=*dset_curr_seq, v=*mem_curr_seq; u<dset_max_nseq && v<mem_max_nseq; ) {
/* Choose smallest buffer to write */
if(mem_len_arr[v]<dset_len_arr[u])
size=mem_len_arr[v];
else
size=dset_len_arr[u];
/* Compute offset on disk */
addr=dset_offset_arr[u];
/* Compute offset in memory */
buf = (const unsigned char *)_buf + mem_offset_arr[v];
/* Write data */
if (H5O_efl_write(efl, addr, size, buf)<0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "block write failed");
/* Update memory information */
mem_len_arr[v]-=size;
mem_offset_arr[v]+=size;
if(mem_len_arr[v]==0)
v++;
/* Update file information */
dset_len_arr[u]-=size;
dset_offset_arr[u]+=size;
if(dset_len_arr[u]==0)
u++;
/* Increment number of bytes copied */
ret_value+=size;
} /* end for */
/* Update current sequence vectors */
*dset_curr_seq=u;
*mem_curr_seq=v;
done:
FUNC_LEAVE_NOAPI(ret_value);
} /* end H5O_efl_writevv() */
/*-------------------------------------------------------------------------
* Function: H5O_efl_debug
*
* Purpose: Prints debugging info for a message.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Robb Matzke
* Tuesday, November 25, 1997
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5O_efl_debug(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, const void *_mesg, FILE * stream,
int indent, int fwidth)
{
const H5O_efl_t *mesg = (const H5O_efl_t *) _mesg;
char buf[64];
int i;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5O_efl_debug, FAIL);
/* check args */
assert(f);
assert(mesg);
assert(stream);
assert(indent >= 0);
assert(fwidth >= 0);
HDfprintf(stream, "%*s%-*s %a\n", indent, "", fwidth,
"Heap address:", mesg->heap_addr);
HDfprintf(stream, "%*s%-*s %u/%u\n", indent, "", fwidth,
"Slots used/allocated:",
mesg->nused, mesg->nalloc);
for (i = 0; i < mesg->nused; i++) {
sprintf (buf, "File %d", i);
HDfprintf (stream, "%*s%s:\n", indent, "", buf);
HDfprintf(stream, "%*s%-*s \"%s\"\n", indent+3, "", MAX (fwidth-3, 0),
"Name:",
mesg->slot[i].name);
HDfprintf(stream, "%*s%-*s %lu\n", indent+3, "", MAX (fwidth-3, 0),
"Name offset:",
(unsigned long)(mesg->slot[i].name_offset));
HDfprintf (stream, "%*s%-*s %lu\n", indent+3, "", MAX (fwidth-3, 0),
"Offset of data in file:",
(unsigned long)(mesg->slot[i].offset));
HDfprintf (stream, "%*s%-*s %lu\n", indent+3, "", MAX (fwidth-3, 0),
"Bytes reserved for data:",
(unsigned long)(mesg->slot[i].size));
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
|