1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/* $Id$ */
#define H5P_PACKAGE /* prevent warning from including H5Ppkg.h */
#define H5S_PACKAGE /* prevent warning from including H5Spkg.h */
#include "H5private.h" /* Generic functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free lists */
#include "H5MMprivate.h" /* Memory management */
#include "H5Oprivate.h" /* Object headers */
#include "H5Ppkg.h" /* Property lists */
#include "H5Rprivate.h" /* References */
#include "H5Spkg.h" /* Dataspace functions */
#if defined (WIN32) && !defined (__MWERKS__)
#include <sys/types.h>
#include <sys/timeb.h>
#endif
#ifdef H5_HAVE_FPHDF5
/* Pablo mask */
#define PABLO_MASK H5O_fphdf5_mask
/* local prototypes */
static void *H5O_fphdf5_decode(H5F_t *f, const uint8_t *p, H5O_shared_t *sh);
static herr_t H5O_fphdf5_encode(H5F_t *f, uint8_t *p, const void *_mesg);
static size_t H5O_fphdf5_size(H5F_t *f, const void *_mesg);
static herr_t H5O_fphdf5_reset(void *_mesg);
static herr_t H5O_fphdf5_free(void *_mesg);
static herr_t H5O_fphdf5_debug(H5F_t *f, const void *_mesg,
FILE *stream, int indent, int fwidth);
/* This message derives from H5O */
const H5O_class_t H5O_FPHDF5[1] = {{
H5O_FPHDF5_ID, /* message id number */
"fphdf5", /* message name for debugging */
sizeof(H5O_fphdf5_t), /* native message size */
H5O_fphdf5_decode, /* decode message */
H5O_fphdf5_encode, /* encode message */
NULL, /* copy the native value */
H5O_fphdf5_size, /* size of symbol table entry */
H5O_fphdf5_reset, /* default reset method */
H5O_fphdf5_free, /* free method */
NULL, /* get share method */
NULL, /* set share method */
H5O_fphdf5_debug, /* debug the message */
}};
#define H5O_FPHDF5_VERSION 1
/* Is the interface initialized? */
static int interface_initialize_g = 0;
#define INTERFACE_INIT NULL
/* Define the free list for H5O_fphdf5_t's */
H5FL_DEFINE_STATIC(H5O_fphdf5_t);
/* Declare external the free list for hsize_t arrays */
H5FL_ARR_EXTERN(hsize_t);
/*
* Function: H5O_fphdf5_decode
* Purpose: Decode a metadata message from the SAP and return a pointer to
* a memory struct with the decoded information.
*
* This function decodes the "raw" form of a metadata message
* sent from the SAP into a struct in memory native format. The
* struct is allocated within this function using malloc() and is
* returned to the caller.
*
* H5F_t *f IN: pointer to the HDF5 file struct
* uint8 *p OUT: the raw information buffer
* H5O_shared_t *sh IN: not used; must be NULL
*
* Return: Success: Pointer to the new message in native order
* Failure: NULL
* Programmer: Bill Wendling, 20. August 2002
* Modifications:
*/
static void *
H5O_fphdf5_decode(H5F_t *f, const uint8_t *p, H5O_shared_t UNUSED *sh)
{
H5O_fphdf5_t *fmeta = NULL; /* New FPHDF5 metadata structure */
void *ret_value;
unsigned int i;
FUNC_ENTER_NOAPI(H5O_fphdf5_decode, NULL);
/* check args */
assert(f);
assert(p);
assert(!sh);
/* decode */
fmeta = H5FL_ALLOC(H5O_fphdf5_t, 1);
/* decode the OID first */
NBYTEDECODE(fmeta->oid,p,sizeof(fmeta->oid));
/* decode the dataspace dimensions next */
fmeta->sdim = H5O_SDSPACE[0].decode(f, p, NULL);
if (!fmeta->sdim)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* jump past the dataspace dimensions part */
p += H5O_SDSPACE[0].raw_size(f, fmeta->sdim);
/* decode the datatype next */
fmeta->dtype = H5O_DTYPE[0].decode(f, p, NULL);
if (!fmeta->dtype)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* jump past the datatype part */
p += H5O_DTYPE[0].raw_size(f, fmeta->dtype);
/* decode the modification time next */
fmeta->mtime = H5O_DTYPE[0].decode(f, p, NULL);
if (!fmeta->dtype)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* jump past the modification time part */
p += H5O_MTIME[0].raw_size(f, fmeta->mtime);
/* decode the group the modification took place in */
fmeta->group = H5O_NAME[0].decode(f, p, NULL);
if (!fmeta->group)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* jump past the group name part */
p += H5O_NAME[0].raw_size(f, fmeta->group);
/* decode the dataset the modification took place in */
fmeta->dset = H5O_NAME[0].decode(f, p, NULL);
if (!fmeta->dset)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* jump past the dataset name part */
p += H5O_NAME[0].raw_size(f, fmeta->dset);
/* decode the property list last */
fmeta->plist = H5O_PLIST[0].decode(f, p, NULL);
if (!fmeta->plist)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* Set return value */
ret_value = (void *)fmeta; /*success*/
done:
if (!ret_value && fmeta) {
/* free up fmeta */
if (H5O_SDSPACE[0].free)
H5O_SDSPACE[0].free(fmeta->sdim);
if (H5O_DTYPE[0].free)
H5O_DTYPE[0].free(fmeta->dtype);
if (H5O_MTIME[0].free)
H5O_MTIME[0].free(fmeta->mtime);
if (H5O_PLIST[0].free)
H5O_PLIST[0].free(fmeta->plist);
H5FL_FREE(H5O_fphdf5_t, fmeta);
}
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_encode
* Purpose: Encode a metadata message for the SAP and return a pointer to
* a memory struct with the encoded information.
*
* This function encodes the "raw" form of a metadata message
* sent from the SAP into a struct in memory native format.
*
* H5F_t *f IN: pointer to the HDF5 file struct
* uint8 *p OUT: the raw information buffer
* const void *mesg IN: pointer to the metadata to encode
*
* Return: Success: Non-negative
* Failure: Negative
* Programmer: Bill Wendling, 21. August 2002
* Modifications:
*/
static herr_t
H5O_fphdf5_encode(H5F_t *f, uint8_t *p, const void *mesg)
{
const H5O_fphdf5_t *fmeta = (const H5O_fphdf5_t *)mesg;
herr_t ret_value = SUCCEED;
unsigned int i;
FUNC_ENTER_NOAPI(H5O_fphdf5_encode, FAIL);
/* check args */
assert(f);
assert(p);
assert(fmeta);
/* encode the OID first */
NBYTEENCODE(p,fmeta->oid,sizeof(fmeta->oid));
/* encode the dataspace dimensions next */
ret_value = H5O_SDSPACE[0].encode(f, p, fmeta->sdim);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
/* jump past the dataspace dimensions part */
p += H5O_SDSPACE[0].raw_size(f, fmeta->sdim);
/* encode the datatype next */
ret_value = H5O_DTYPE[0].encode(f, p, fmeta->dtype);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
/* jump past the datatype part */
p += H5O_DTYPE[0].raw_size(f, fmeta->dtype);
/* encode the modification time next */
ret_value = H5O_DTYPE[0].encode(f, p, fmeta->mtime);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
/* jump past the modification time part */
p += H5O_MTIME[0].raw_size(f, fmeta->mtime);
/* encode the group name next */
ret_value = H5O_NAME[0].encode(f, p, fmeta->group);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
/* jump past the group name part */
p += H5O_NAME[0].raw_size(f, fmeta->group);
/* encode the dataset name next */
ret_value = H5O_NAME[0].encode(f, p, fmeta->dset);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
/* jump past the dataset name part */
p += H5O_NAME[0].raw_size(f, fmeta->dset);
/* decode the property list last */
ret_value = H5O_PLIST[0].encode(f, p, fmeta->plist);
if (ret_value < 0)
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed");
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_copy
* Purpose: Copies a metadata object from MESG to DEST allocating DEST if
* necessary.
*
* const void *mesg IN: pointer to the metadata to copy
* const void *dest OUT: pointer to the destination metadata struct
*
* Return: Success: Pointer to DEST
* Failure: NULL
* Programmer: Bill Wendling, 21. August 2002
* Modifications:
*/
static void *
H5O_fphdf5_copy(const void *mesg, void *dest)
{
const H5O_fphdf5_t *src = (const H5O_fphdf5_t *)mesg;
H5O_fphdf5_t *dst = (H5O_fphdf5_t *)dest;
void *ret_value;
FUNC_ENTER_NOAPI(H5O_fphdf5_copy, NULL);
/* check args */
assert(src);
if (!dst && NULL == (dst = H5FL_ALLOC(H5O_fphdf5_t, 0)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed");
/* copy the individual metadata*/
HDmemcpy(dst->oid,src->oid,sizeof(src->oid));
H5O_SDSPACE[0].copy(src->sdim, dst->sdim);
H5O_DTYPE[0].copy(src->dtype, dst->dtype);
H5O_MTIME[0].copy(src->mtime, dst->mtime);
H5O_NAME[0].copy(src->group, dst->group);
H5O_NAME[0].copy(src->dset, dst->dset);
if (H5O_PLIST[0].copy)
H5O_PLIST[0].copy(src->plist, dst->plist);
/* Set return value */
ret_value = dst;
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_size
* Purpose: Return the raw message size in bytes.
*
* This function returns the size of hte raw simple
* dimensionality, datatype, and object path message on succes.
* (Not counting the message type or size fields, only the data
* portion of the message). It doesn't take into account
* alignment.
*
* H5F_t *f IN: pointer to the HDF5 file struct
* const void *mesg IN: pointer to the metadata structure
*
* Return: Success: Size of message
* Failure: 0
* Programmer: Bill Wendling, 21. August 2002
* Modifications:
*/
static size_t
H5O_fphdf5_size(H5F_t *f, const void *mesg)
{
const H5O_fphdf5_t *fmeta = (const H5O_fphdf5_t *)mesg;
size_t ret_value;
FUNC_ENTER_NOAPI(H5O_fphdf5_size, 0);
/* add in the metadata sizes */
ret_value = sizeof(fmeta->oid);
ret_value += H5O_SDSPACE[0].raw_size(f, fmeta->sdim);
ret_value += H5O_DTYPE[0].raw_size(f, fmeta->dtype);
ret_value += H5O_MTIME[0].raw_size(f, fmeta->mtime);
ret_value += H5O_NAME[0].raw_size(f, fmeta->group);
ret_value += H5O_NAME[0].raw_size(f, fmeta->dset);
ret_value += H5O_PLIST[0].raw_size(f, fmeta->plist);
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_reset
* Purpose: Frees the inside of a metadata message and resets it to some
* initial value.
*
* const void *mesg IN: pointer to the metadata to reset
*
* Return: Success: Non-negative
* Failure: Negative
* Programmer: Bill Wendling, 21. August 2002
* Modifications:
*/
static herr_t
H5O_fphdf5_reset(void *mesg)
{
H5O_fphdf5_t *fmeta = (H5O_fphdf5_t *)mesg;
herr_t ret_value = SUCCEED;
unsigned int i;
FUNC_ENTER_NOAPI(H5O_fphdf5_reset, FAIL);
/* reset the metadata */
HDmemset(fmeta->oid,0,sizeof(fmeta->oid));
if (H5O_SDSPACE[0].reset)
ret_value = H5O_SDSPACE[0].reset(fmeta->sdim);
if (H5O_DTYPE[0].reset)
ret_value = H5O_DTYPE[0].reset(fmeta->dtype);
if (H5O_MTIME[0].reset)
ret_value = H5O_MTIME[0].reset(fmeta->mtime);
if (H5O_NAME[0].reset)
ret_value = H5O_NAME[0].reset(fmeta->group);
if (H5O_NAME[0].reset)
ret_value = H5O_NAME[0].reset(fmeta->dset);
if (H5O_PLIST[0].reset)
ret_value = H5O_PLIST[0].reset(fmeta->plist);
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_free
* Purpose: Free's the message
*
* const void *mesg IN: pointer to the metadata to free
*
* Return: Success: Non-negative
* Failure: Negative
* Programmer: Bill Wendling, 21. August 2002
* Modifications:
*/
static herr_t
H5O_fphdf5_free(void *mesg)
{
H5O_fphdf5_t *fmeta = (H5O_fphdf5_t *)mesg;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI(H5O_fphdf5_free, FAIL);
assert(fmeta);
if (H5O_SDSPACE[0].free)
ret_value = H5O_SDSPACE[0].free(fmeta->sdim);
if (H5O_DTYPE[0].free)
ret_value = H5O_DTYPE[0].free(fmeta->dtype);
if (H5O_MTIME[0].free)
ret_value = H5O_MTIME[0].free(fmeta->mtime);
if (H5O_NAME[0].free)
ret_value = H5O_NAME[0].free(fmeta->group);
if (H5O_NAME[0].free)
ret_value = H5O_NAME[0].free(fmeta->dset);
if (H5O_PLIST[0].free)
ret_value = H5O_PLIST[0].free(fmeta->plist);
H5FL_FREE(H5O_fphdf5_t, fmeta);
done:
FUNC_LEAVE(ret_value);
}
/*
* Function: H5O_fphdf5_debug
* Purpose: Prints debugging information for the metadata message.
*
* H5F_t *f IN: pointer to the HDF5 file struct
* const void *mesg IN: Pointer to the source metadata struct
* FILE *stream IN: Pointer to the stream for output data
* int indent IN: Amount to indent information by
* int fwidth IN: Field width (?)
*
* Return: Success: Non-negative
* Failure: Negative
* Programmer: Bill Wendling, 22. August 2002
* Modifications:
*/
static herr_t
H5O_fphdf5_debug(H5F_t UNUSED *f, const void *mesg,
FILE * stream, int indent, int fwidth)
{
const H5O_fphdf5_t *fmeta = (const H5O_fphdf5_t *) mesg;
herr_t ret_value = SUCCEED;
unsigned int i;
FUNC_ENTER_NOAPI(H5O_fphdf5_debug, FAIL);
/* check args */
assert(f);
assert(fmeta);
assert(stream);
assert(indent >= 0);
assert(fwidth >= 0);
HDfprintf(stream, "%*s%-*s\n", indent, "", fwidth, "Metadata:");
HDfprintf(stream, "%*sOID: 0x", indent + 1, "");
for (i = 0; i < sizeof(fmeta->oid); ++i)
HDfprintf(stream, "%02x", fmeta->oid[i]);
HDfprintf(stream, "\n");
ret_value = H5O_SDSPACE[0].debug(f, fmeta->sdim, stream, indent + 1, fwidth);
ret_value = H5O_DTYPE[0].debug(f, fmeta->dtype, stream, indent + 1, fwidth);
ret_value = H5O_MTIME[0].debug(f, fmeta->mtime, stream, indent + 1, fwidth);
ret_value = H5O_NAME[0].debug(f, fmeta->group, stream, indent + 1, fwidth);
ret_value = H5O_NAME[0].debug(f, fmeta->dset, stream, indent + 1, fwidth);
ret_value = H5O_PLIST[0].debug(f, fmeta->plist, stream, indent + 1, fwidth);
HDfprintf(stream, "}\n");
done:
FUNC_LEAVE(ret_value);
}
#endif /* H5_HAVE_FPHDF5 */
|