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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*-------------------------------------------------------------------------
*
* Created: H5PB2.c
*
* Purpose: Re-implementation of the page buffer with added features to
* support VFD SWMR.
* JRM -- 10/11/18
*
*-------------------------------------------------------------------------
*/
/****************/
/* Module Setup */
/****************/
#define H5F_FRIEND /* suppress error about including H5Fpkg */
#include "H5PBmodule.h" /* This source code file is part of the
* H5PB module
*/
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* Files */
#include "H5FDprivate.h" /* File drivers */
#include "H5Iprivate.h" /* IDs */
#include "H5FLprivate.h" /* Free lists */
#include "H5MMprivate.h" /* Memory management */
#include "H5PBpkg.h" /* File access */
/****************/
/* Local Macros */
/****************/
/* In principle, we should be able to run the page buffer with the
* accumulator. However, for whatever reason, the fheap test encounteres
* metadata corruption if the page buffer uses H5F__accum_read/write()
* for I/O.
*
* The following #define controls this. Set VFD_IO to FALSE to reproduce
* the bug.
*/
#define VFD_IO FALSE
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
static H5PB_entry_t * H5PB__allocate_page(H5PB_t *pb_ptr, size_t buf_size,
hbool_t clean_image);
static herr_t H5PB__create_new_page(H5PB_t *pb_ptr, haddr_t addr, size_t size,
H5FD_mem_t type, hbool_t clean_image, H5PB_entry_t **entry_ptr_ptr);
static void H5PB__deallocate_page(H5PB_entry_t *entry_ptr);
static herr_t H5PB__evict_entry(H5PB_t *pb_ptr, H5PB_entry_t *entry_ptr,
hbool_t force);
static herr_t H5PB__flush_entry(H5F_t *f, H5PB_t *pb_ptr,
H5PB_entry_t *entry_ptr);
static herr_t H5PB__load_page(H5F_t *f, H5PB_t *pb_ptr, haddr_t addr,
H5FD_mem_t type, H5PB_entry_t **entry_ptr_ptr);
static herr_t H5PB__make_space(H5F_t *f, H5PB_t *pb_ptr,
H5FD_mem_t inserted_type);
static herr_t H5PB__mark_entry_clean(H5PB_t *pb_ptr,
H5PB_entry_t *entry_ptr);
static herr_t H5PB__mark_entry_dirty(H5F_t * f, H5PB_t *pb_ptr,
H5PB_entry_t *entry_ptr);
static herr_t H5PB__read_meta(H5F_t *f, H5FD_mem_t type, haddr_t addr,
size_t size, void *buf/*out*/);
static herr_t H5PB__read_raw(H5F_t *f, H5FD_mem_t type, haddr_t addr,
size_t size, void *buf/*out*/);
static herr_t H5PB__write_meta(H5F_t *f, H5FD_mem_t type, haddr_t addr,
size_t size, const void *buf/*out*/);
static herr_t H5PB__write_raw(H5F_t *f, H5FD_mem_t type, haddr_t addr,
size_t size, const void *buf/*out*/);
/*********************/
/* Package Variables */
/*********************/
/* Package initialization variable */
hbool_t H5_PKG_INIT_VAR = FALSE;
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Declare a free list to manage the H5PB_t struct */
H5FL_DEFINE_STATIC(H5PB_t);
/* Declare a free list to manage the H5PB_entry_t struct */
H5FL_DEFINE_STATIC(H5PB_entry_t);
/*-------------------------------------------------------------------------
*
* Function: H5PB_reset_stats
*
* Purpose: Reset statistics collected for the page buffer layer.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_reset_stats(H5PB_t *pb_ptr)
{
int i;
FUNC_ENTER_NOAPI_NOERR
/* Sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
for ( i = 0; i < H5PB__NUM_STAT_TYPES; i++ ) {
pb_ptr->bypasses[i] = 0;
pb_ptr->accesses[i] = 0;
pb_ptr->hits[i] = 0;
pb_ptr->misses[i] = 0;
pb_ptr->loads[i] = 0;
pb_ptr->insertions[i] = 0;
pb_ptr->flushes[i] = 0;
pb_ptr->evictions[i] = 0;
pb_ptr->clears[i] = 0;
}
pb_ptr->max_lru_len = 0;
pb_ptr->max_lru_size = 0;
pb_ptr->lru_md_skips = 0;
pb_ptr->lru_rd_skips = 0;
pb_ptr->total_ht_insertions = 0;
pb_ptr->total_ht_deletions = 0;
pb_ptr->successful_ht_searches = 0;
pb_ptr->total_successful_ht_search_depth = 0;
pb_ptr->failed_ht_searches = 0;
pb_ptr->total_failed_ht_search_depth = 0;
pb_ptr->max_index_len = 0;
pb_ptr->max_clean_index_len = 0;
pb_ptr->max_dirty_index_len = 0;
pb_ptr->max_clean_index_size = 0;
pb_ptr->max_dirty_index_size = 0;
pb_ptr->max_index_size = 0;
pb_ptr->max_rd_pages = 0;
pb_ptr->max_md_pages = 0;
pb_ptr->max_mpmde_count = 0;
pb_ptr->lru_tl_skips = 0;
pb_ptr->max_tl_len = 0;
pb_ptr->max_tl_size = 0;
pb_ptr->delayed_writes = 0;
pb_ptr->total_delay = 0;
pb_ptr->max_dwl_len = 0;
pb_ptr->max_dwl_size = 0;
pb_ptr->total_dwl_ins_depth = 0;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5PB_reset_stats() */
/*-------------------------------------------------------------------------
* Function: H5PB_get_stats
*
* Purpose: This function was created without documentation.
* What follows is my best understanding of Mohamad's intent.
*
* Retrieve statistics collected about page accesses for the
* page buffer layer.
*
* --accesses: the number of metadata and raw data accesses
* to the page buffer layer
*
* --hits: the number of metadata and raw data hits in
* the page buffer layer
*
* --misses: the number of metadata and raw data misses in
* the page buffer layer
*
* --evictions: the number of metadata and raw data evictions
* from the page buffer layer
*
* --bypasses: the number of metadata and raw data accesses
* that bypass the page buffer layer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_get_stats(const H5PB_t *pb_ptr, unsigned accesses[2], unsigned hits[2],
unsigned misses[2], unsigned evictions[2], unsigned bypasses[2])
{
FUNC_ENTER_NOAPI_NOERR
/* Sanity checks */
HDassert(pb_ptr);
accesses[0] = (unsigned)pb_ptr->accesses[0];
accesses[1] = (unsigned)pb_ptr->accesses[1];
accesses[2] = (unsigned)pb_ptr->accesses[2];
hits[0] = (unsigned)pb_ptr->hits[0];
hits[1] = (unsigned)pb_ptr->hits[1];
hits[2] = (unsigned)pb_ptr->hits[2];
misses[0] = (unsigned)pb_ptr->misses[0];
misses[1] = (unsigned)pb_ptr->misses[1];
misses[2] = (unsigned)pb_ptr->misses[2];
evictions[0] = (unsigned)pb_ptr->evictions[0];
evictions[1] = (unsigned)pb_ptr->evictions[1];
evictions[2] = (unsigned)pb_ptr->evictions[2];
bypasses[0] = (unsigned)pb_ptr->bypasses[0];
bypasses[1] = (unsigned)pb_ptr->bypasses[1];
bypasses[2] = (unsigned)pb_ptr->bypasses[2];
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5PB_get_stats */
/*-------------------------------------------------------------------------
*
* Function: H5PB_print_stats()
*
* Purpose: Print out statistics collected for the page buffer layer.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_print_stats(const H5PB_t *pb_ptr)
{
double ave_succ_search_depth = 0.0L;
double ave_failed_search_depth = 0.0L;
double ave_delayed_write = 0.0L;
double ave_delayed_write_ins_depth = 0.0L;
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDfprintf(stdout, "\n\nPage Buffer Statistics (raw/meta/mpmde): \n\n");
HDfprintf(stdout, "bypasses = %lld (%lld/%lld/%lld)\n",
(pb_ptr->bypasses[0] + pb_ptr->bypasses[1] + pb_ptr->bypasses[2]),
pb_ptr->bypasses[0], pb_ptr->bypasses[1], pb_ptr->bypasses[2]);
HDfprintf(stdout, "acesses = %lld (%lld/%lld/%lld)\n",
(pb_ptr->accesses[0] + pb_ptr->accesses[1] + pb_ptr->accesses[2]),
pb_ptr->accesses[0], pb_ptr->accesses[1], pb_ptr->accesses[2]);
HDfprintf(stdout, "hits = %lld (%lld/%lld/%lld)\n",
(pb_ptr->hits[0] + pb_ptr->hits[1] + pb_ptr->hits[2]),
pb_ptr->hits[0], pb_ptr->hits[1], pb_ptr->hits[2]);
HDfprintf(stdout, "misses = %lld (%lld/%lld/%lld)\n",
(pb_ptr->misses[0] + pb_ptr->misses[1] + pb_ptr->misses[2]),
pb_ptr->misses[0], pb_ptr->misses[1], pb_ptr->misses[2]);
HDfprintf(stdout, "loads = %lld (%lld/%lld/%lld)\n",
(pb_ptr->loads[0] + pb_ptr->loads[1] + pb_ptr->loads[2]),
pb_ptr->loads[0], pb_ptr->loads[1], pb_ptr->loads[2]);
HDfprintf(stdout, "insertions = %lld (%lld/%lld/%lld)\n",
(pb_ptr->insertions[0] + pb_ptr->insertions[1] +
pb_ptr->insertions[2]),
pb_ptr->insertions[0], pb_ptr->insertions[1],
pb_ptr->insertions[2]);
HDfprintf(stdout, "flushes = %lld (%lld/%lld/%lld)\n",
(pb_ptr->flushes[0] + pb_ptr->flushes[1] + pb_ptr->flushes[2]),
pb_ptr->flushes[0], pb_ptr->flushes[1], pb_ptr->flushes[2]);
HDfprintf(stdout, "evictions = %lld (%lld/%lld/%lld)\n",
(pb_ptr->evictions[0] + pb_ptr->evictions[1] +
pb_ptr->evictions[2]),
pb_ptr->evictions[0], pb_ptr->evictions[1], pb_ptr->evictions[2]);
HDfprintf(stdout, "clears = %lld (%lld/%lld/%lld)\n",
(pb_ptr->clears[0] + pb_ptr->clears[1] + pb_ptr->clears[2]),
pb_ptr->clears[0], pb_ptr->clears[1], pb_ptr->clears[2]);
HDfprintf(stdout, "max LRU len / size = %lld / %lld\n",
pb_ptr->max_lru_len, pb_ptr->max_lru_size);
HDfprintf(stdout,
"LRU make space md/rd/tl skips = %lld/%lld/%lld\n",
pb_ptr->lru_md_skips, pb_ptr->lru_rd_skips,
pb_ptr->lru_tl_skips);
HDfprintf(stdout, "hash table insertions / deletions = %lld / %lld\n",
pb_ptr->total_ht_insertions, pb_ptr->total_ht_deletions);
if ( pb_ptr->successful_ht_searches > 0 ) {
ave_succ_search_depth =
(double)(pb_ptr->total_successful_ht_search_depth) /
(double)(pb_ptr->successful_ht_searches);
}
HDfprintf(stdout, "successful ht searches / ave depth = %lld / %llf\n",
pb_ptr->successful_ht_searches, ave_succ_search_depth);
if ( pb_ptr->failed_ht_searches > 0 ) {
ave_failed_search_depth =
(double)(pb_ptr->total_failed_ht_search_depth) /
(double)(pb_ptr->failed_ht_searches);
}
HDfprintf(stdout, "failed ht searches / ave depth = %lld / %llf\n",
pb_ptr->failed_ht_searches, ave_failed_search_depth);
HDfprintf(stdout, "max index length / size = %lld / %lld\n",
pb_ptr->max_index_len, pb_ptr->max_index_size);
HDfprintf(stdout, "max rd / md / mpmde entries = %lld / %lld / %lld\n",
pb_ptr->max_rd_pages, pb_ptr->max_md_pages,
pb_ptr->max_mpmde_count);
HDfprintf(stdout, "tick list max len / size = %lld / %lld\n",
pb_ptr->max_tl_len, pb_ptr->max_tl_size);
HDfprintf(stdout, "delayed write list max len / size = %lld / %lld\n",
pb_ptr->max_dwl_len, pb_ptr->max_dwl_size);
if ( pb_ptr->delayed_writes > 0 ) {
ave_delayed_write = (double)(pb_ptr->total_delay) /
(double)(pb_ptr->delayed_writes);
ave_delayed_write_ins_depth = (double)(pb_ptr->total_dwl_ins_depth) /
(double)(pb_ptr->delayed_writes);
}
HDfprintf(stdout,
"delayed writes / ave delay / ave ins depth = %lld / %llf / %llf\n",
pb_ptr->delayed_writes, ave_delayed_write, ave_delayed_write_ins_depth);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5PB_print_stats */
/*-------------------------------------------------------------------------
*
* Function: H5PB_add_new_page
*
* Purpose: Insert a new blank page to the page buffer if the page
* buffer is configured to allow pages of the specified
* type.
*
* This function is called by the MF layer when a new page
* is allocated to indicate to the page buffer layer that
* a read of the page from the file is not necessary since
* it's an empty page.
*
* For purposes of the VFD SWMR writer, we also track pages
* that are inserted via this call, as the fact that the
* page was allocated implies that an earlier version does
* not exist in the HDF5 file, and thus we need not concern
* ourselves with delaying the write of this pages to avoid
* messages from the future on the reader.
*
* Note that this function inserts the new page without
* attempting to make space. This can result in the page
* buffer exceeding its maximum size.
*
* Note also that it is possible that the page (marked clean)
* will be evicted before its first use.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_add_new_page(H5F_t *f, H5FD_mem_t type, haddr_t page_addr)
{
hbool_t can_insert = TRUE;
H5PB_t *pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
if ( H5FD_MEM_DRAW == type ) { /* raw data page insertion */
if ( pb_ptr->min_md_pages == pb_ptr->max_pages ) {
can_insert = FALSE;
}
} else { /* metadata page insertion */
if ( pb_ptr->min_rd_pages == pb_ptr->max_pages ) {
can_insert = FALSE;
}
}
if ( can_insert ) {
if ( H5PB__create_new_page(pb_ptr, page_addr,
(size_t)(pb_ptr->page_size),
type, TRUE, &entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"new page buffer page creation failed.")
/* make note that this page was allocated, not loaded from file */
entry_ptr->loaded = FALSE;
/* updates stats */
H5PB__UPDATE_STATS_FOR_INSERTION(pb_ptr, entry_ptr);
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_add_new_page */
/*-------------------------------------------------------------------------
*
* Function: H5PB_create
*
* Purpose: Setup a page buffer for the supplied file.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_create(H5F_t *f, size_t size, unsigned page_buf_min_meta_perc,
unsigned page_buf_min_raw_perc)
{
hbool_t vfd_swmr_writer = FALSE;
int i;
int32_t min_md_pages;
int32_t min_rd_pages;
H5PB_t *pb_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(page_buf_min_meta_perc <= 100);
HDassert(page_buf_min_raw_perc <= 100);
HDassert((page_buf_min_meta_perc + page_buf_min_raw_perc) <= 100);
/* Check args */
if ( f->shared->fs_strategy != H5F_FSPACE_STRATEGY_PAGE )
HGOTO_ERROR(H5E_FILE, H5E_CANTINIT, FAIL, \
"Enabling Page Buffering requires PAGE file space strategy")
else if ( size > f->shared->fs_page_size ) {
/* round size down to the next multiple of fs_page_size */
hsize_t temp_size;
temp_size = (size / f->shared->fs_page_size) * f->shared->fs_page_size;
H5_CHECKED_ASSIGN(size, size_t, temp_size, hsize_t);
} /* end if */
else if ( 0 != size % f->shared->fs_page_size )
HGOTO_ERROR(H5E_PAGEBUF, H5E_CANTINIT, FAIL, \
"Page Buffer size must be >= to the page size")
/* Calculate the minimum page count for metadata and raw data
* based on the fractions provided
*/
min_md_pages = (int32_t)((size * page_buf_min_meta_perc) /
(f->shared->fs_page_size * 100));
min_rd_pages = (int32_t)((size * page_buf_min_raw_perc) /
(f->shared->fs_page_size * 100));
HDassert(min_md_pages >= 0);
HDassert(min_rd_pages >= 0);
HDassert((min_md_pages + min_rd_pages) <=
(int32_t)(size / f->shared->fs_page_size));
/* compute vfd_swmr_writer */
if ( ( H5F_VFD_SWMR_CONFIG(f) ) && ( H5F_INTENT(f) & H5F_ACC_RDWR ) ) {
HDassert(f->shared->vfd_swmr_config.vfd_swmr_writer);
vfd_swmr_writer = TRUE;
}
/* Allocate the new page buffering structure */
if(NULL == (pb_ptr = H5FL_MALLOC(H5PB_t)))
HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, FAIL, "memory allocation failed")
/* initialize the new instance of H5PB_t */
pb_ptr->magic = H5PB__H5PB_T_MAGIC;
pb_ptr->page_size = f->shared->fs_page_size;
H5_CHECKED_ASSIGN(pb_ptr->page_size, size_t, \
f->shared->fs_page_size, hsize_t);
pb_ptr->max_pages = (int32_t)(size / f->shared->fs_page_size);
pb_ptr->curr_pages = 0;
pb_ptr->curr_md_pages = 0;
pb_ptr->curr_rd_pages = 0;
pb_ptr->min_md_pages = min_md_pages;
pb_ptr->min_rd_pages = min_rd_pages;
pb_ptr->max_size = size;
pb_ptr->min_meta_perc = page_buf_min_meta_perc;
pb_ptr->min_raw_perc = page_buf_min_raw_perc;
/* index */
for ( i = 0; i < H5PB__HASH_TABLE_LEN; i++ )
pb_ptr->ht[i] = NULL;
pb_ptr->index_len = 0;
pb_ptr->clean_index_len = 0;
pb_ptr->dirty_index_len = 0;
pb_ptr->index_size = 0;
pb_ptr->clean_index_size = 0;
pb_ptr->dirty_index_size = 0;
pb_ptr->il_len = 0;
pb_ptr->il_size = 0;
pb_ptr->il_head = NULL;
pb_ptr->il_tail = NULL;
/* LRU */
pb_ptr->LRU_len = 0;
pb_ptr->LRU_size = 0;
pb_ptr->LRU_head_ptr = NULL;
pb_ptr->LRU_tail_ptr = NULL;
/* VFD SWMR specific fields.
* The following fields are defined iff vfd_swmr_writer is TRUE.
*/
pb_ptr->vfd_swmr_writer = vfd_swmr_writer;
pb_ptr->mpmde_count = 0;
pb_ptr->cur_tick = 0;
/* delayed write list */
pb_ptr->max_delay = 0;
pb_ptr->dwl_len = 0;
pb_ptr->dwl_size = 0;
pb_ptr->dwl_head_ptr = NULL;
pb_ptr->dwl_tail_ptr = NULL;
/* tick list */
pb_ptr->tl_len = 0;
pb_ptr->tl_size = 0;
pb_ptr->tl_head_ptr = NULL;
pb_ptr->tl_tail_ptr = NULL;
H5PB_reset_stats(pb_ptr);
f->shared->pb_ptr = pb_ptr;
/* if this is a VFD SWMR reader, inform the reader VFD that the
* page buffer is configured. Note that this is for sanity
* checking, and only needed until we modify the file open
* code to create the page buffer before any file reads in
* the VFD SWMR reader case. After that, this code should be
* removed.
* JRM -- 1/29/19
*/
if ( ( H5F_VFD_SWMR_CONFIG(f) ) &&
( 0 == (H5F_INTENT(f) & H5F_ACC_RDWR) ) ) {
HDassert(f->shared->lf);
HDassert(! f->shared->vfd_swmr_config.vfd_swmr_writer);
H5FD_vfd_swmr_set_pb_configured(f->shared->lf);
}
done:
if ( ret_value < 0 ) {
if ( pb_ptr != NULL ) {
pb_ptr = H5FL_FREE(H5PB_t, pb_ptr);
}
}
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_create */
/*-------------------------------------------------------------------------
*
* Function: H5PB_dest
*
* Purpose: Flush (if necessary) and evict all entries in the page
* buffer, and then discard the page buffer.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/22/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_dest(H5F_t *f)
{
int i;
H5PB_t *pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
H5PB_entry_t *evict_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity check */
HDassert(f);
HDassert(f->shared);
/* flush and destroy the page buffer, if it exists */
if ( f->shared->pb_ptr ) {
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
/* the current implementation if very inefficient, and will
* fail if there are any outstanding delayed writes -- must fix this
*/
for ( i = 0; i < H5PB__HASH_TABLE_LEN; i++ ) {
entry_ptr = pb_ptr->ht[i];
while ( entry_ptr ) {
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
evict_ptr = entry_ptr;
entry_ptr = entry_ptr->ht_next;
if ( evict_ptr->is_dirty ) {
if ( H5PB__flush_entry(f, pb_ptr, evict_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"Can't flush entry")
}
if ( H5PB__evict_entry(pb_ptr, evict_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"forced eviction failed")
entry_ptr = pb_ptr->ht[i];
}
}
/* regular operations fields */
HDassert(pb_ptr->curr_pages == 0);
HDassert(pb_ptr->curr_md_pages == 0);
HDassert(pb_ptr->curr_rd_pages == 0);
HDassert(pb_ptr->index_len == 0);
HDassert(pb_ptr->index_size == 0);
HDassert(pb_ptr->LRU_len == 0);
HDassert(pb_ptr->LRU_size == 0);
HDassert(pb_ptr->LRU_head_ptr == NULL);
HDassert(pb_ptr->LRU_tail_ptr == NULL);
/* VFD SWMR fields */
HDassert(pb_ptr->dwl_len == 0);
HDassert(pb_ptr->dwl_size == 0);
HDassert(pb_ptr->dwl_head_ptr == NULL);
HDassert(pb_ptr->dwl_tail_ptr == NULL);
HDassert(pb_ptr->tl_len == 0);
HDassert(pb_ptr->tl_size == 0);
HDassert(pb_ptr->tl_head_ptr == NULL);
HDassert(pb_ptr->tl_tail_ptr == NULL);
pb_ptr->magic = 0;
f->shared->pb_ptr = H5FL_FREE(H5PB_t, pb_ptr);
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_dest */
/*-------------------------------------------------------------------------
*
* Function: H5PB_flush
*
* Purpose: If the page buffer is defined, flush all entries.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/22/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_flush(H5F_t *f)
{
int i;
H5PB_t *pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
H5PB_entry_t *flush_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity check */
HDassert(f);
HDassert(f->shared);
pb_ptr = f->shared->pb_ptr;
if ( pb_ptr ) {
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
/* the current implementation if very inefficient, and will
* fail if there are any delayed writes -- must fix this
*/
for ( i = 0; i < H5PB__HASH_TABLE_LEN; i++ ) {
entry_ptr = pb_ptr->ht[i];
while ( entry_ptr ) {
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
flush_ptr = entry_ptr;
entry_ptr = entry_ptr->ht_next;
if ( flush_ptr->is_dirty ) {
if ( H5PB__flush_entry(f, pb_ptr, flush_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"Can't flush entry")
}
}
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_flush */
/*-------------------------------------------------------------------------
*
* Function: H5PB_page_exists
*
* Purpose: Test to see if a page buffer page exists at the specified
* address. Set *page_exists_ptr to TRUE or FALSE accordingly.
*
* This function exists for the convenience of the test
* code
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/22/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_page_exists(H5F_t *f, haddr_t addr, hbool_t *page_exists_ptr)
{
uint64_t page;
H5PB_t *pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity check */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(page_exists_ptr);
/* Calculate the page offset */
page = (addr / pb_ptr->page_size);
/* the supplied address should be page aligned */
HDassert(addr == page * pb_ptr->page_size);
/* Search for page in the hash table */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
HDassert((NULL == entry_ptr) || (entry_ptr->addr == addr));
*page_exists_ptr = ( entry_ptr != NULL );
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_page_exists */
/*-------------------------------------------------------------------------
*
* Function: H5PB_read
*
* Purpose: Satisfy the read from the page buffer if possible.
*
* 1) If the page buffer is disabled, simply read from the
* HDF5 file and return.
*
* 2) If the read is for raw data, and the page buffer is
* configured for metadata only (i.e. min_md_pages ==
* max_pages), simply read from the HDF5 file and return.
*
* 3) If the read is for raw data, and it of page size or
* larger, read it directly from the HDF5 file.
*
* It is possible that the page buffer contains dirty pages
* that intersect with the read -- test for this and update
* the read buffer from the page buffer if any such pages
* exist.
*
* Note that no pages are inserted into the page buffer in
* this case.
*
* 4) If the read is for raw data, and it is of size less
* than the page size, satisfy the read from the page
* buffer, loading and inserting pages into the
* page buffer as necessary
*
* 5) If the read is for metadata, and the page buffer is
* configured for raw data only (i.e. min_rd_pages ==
* max_pages), simply read from the HDF5 file and return.
*
* The free space manager guarantees that allocations larger
* than one page will be page alligned, and that allocations
* of size less than or equal to page size will not cross page
* boundaries. Further, unlike raw data, metadata is always
* written and read atomically.
*
* In principle, this should make it easy to discriminate
* between small and multi-page metadata entries so that
* pages containing the former will be buffered and the
* latter be read directly from file.
*
* Unfortunately, the metadata cache does not always know the
* size of metadata entries when it tries to read them. In
* such cases, it issues speculative reads that may be either
* smaller or larger than the actual size of the piece of
* metadata that is finally read.
*
* Since we are guaranteed that all metadata allocations larger
* that one page are page aligned, we can safely clip at the
* page boundary any non page aligned metadata read that crosses
* page boundaries.
*
* However, page aligned reads could wind up being either
* small or multi-page. This results in two scenarios that
* we must handle:
*
* a) A page aligned read of size less than one page
* turns out to be mult-page.
*
* In this case, the initial speculative read will
* result in a page load and insertion into the page
* buffer. This page must be evicted on the subsequent
* read of size greater than page size.
*
* In the context of VFD SWMR, it is also possible that
* that the multi-page metadata entry is already in the
* page buffer -- in which case the initial read should
* be satisfied from the multi-page page buffer entry.
*
* b) A page aligned, larger than one page read turns out
* to be small (less than one page).
*
* If there is already a page in the page buffer with
* same address, we can safely clip the original
* read to page size
*
* The above considerations resolve into the following cases:
*
* 6) If the read is for metadata and not page aligned, clip
* the read to the end of the current page if necessary.
* Load the relevant page if necessary and satisfy the
* read from the page buffer. Note that it there is an
* existing page, it must not be a multi-page metadata
* entry. It it is, flag an error.
*
* 7) If the read is for metadata, is page aligned, is larger
* than one page, and there is no entry in the page buffer,
* satisfy the read from the file
*
* 8) If the read is for metadata, is page aligned, is larger
* than one page, and there is a regular entry at the target
* page address, test to see if the last read was for the
* same address.
*
* If was, evict the page, and satisfy the read from file.
* Flag an error if the page was dirty.
*
* If the last read was for a different page, clip the read
* to one page, and satisfy the read from the existing
* regular entry.
*
* 9) If the read is for metadata, is page aligned, is larger
* than one page, and there is a multi-page metadata entry
* at the target page address, test to see if
* pb_ptr->vfd_swmr_write is TRUE.
*
* If it is, satisfy the read from the multi-page metadata
* entry, clipping the read if necessary.
*
* if pb_ptr->vfd_swmr_write is FALSE, flag an error.
*
* 10) If the read is for metadata, is page aligned, is no
* larger than a page, test to see if the page buffer
* contains a page at the target address.
*
* If it doesn't, load the page and satisfy the read
* from it.
*
* If it contains a regular page entry, satisfy the read
* from it.
*
* If it contains a multipage metadata entry at the target
* address, satisfy the read from the multi-page metadata
* entry if pb_ptr->vfd_swmr_write is TRUE, and flag an
* error otherwise.
*
* Observe that this function handles casses 1, 2, and 5
* directly, calls H5PB_read_raw() for cases 3 & 4, and
* calls H5PB_read_meta() for cases 6), 7, 8, 9), and 10).
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
/* TBD Add optional raw-data bypass here and at H5PB_write when we
* are operating in parallel mode.
*/
herr_t
H5PB_read(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
void *buf/*out*/)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
hbool_t bypass_pb = FALSE; /* Whether to bypass page buffering */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(type != H5FD_MEM_GHEAP);
pb_ptr = f->shared->pb_ptr;
if ( pb_ptr == NULL ) {
bypass_pb = TRUE; /* case 1) -- page buffer is disabled */
} else {
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
if ( H5FD_MEM_DRAW == type ) { /* raw data read */
if ( pb_ptr->min_md_pages == pb_ptr->max_pages ) {
/* case 2) -- page buffer configured for metadata only */
bypass_pb = TRUE;
}
} else { /* metadata read */
if ( pb_ptr->min_rd_pages == pb_ptr->max_pages ) {
/* case 5) -- page buffer configured for raw data only */
bypass_pb = TRUE;
}
}
}
#ifdef H5_HAVE_PARALLEL
/* at present, the page buffer must be disabled in the parallel case.
* However, just in case ...
*/
if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
bypass_pb = TRUE;
} /* end if */
#endif /* H5_HAVE_PARALLEL */
if ( bypass_pb ) { /* cases 1, 2. and 5 */
#if VFD_IO
if ( H5FD_read(f->shared->lf, type, addr, size, buf) < 0 )
#else /* VFD_IO */
if ( H5F__accum_read(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"read through metadata accumulator failed")
/* Update statistics */
if ( pb_ptr ) {
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
}
} else {
if ( H5FD_MEM_DRAW == type ) { /* cases 3 and 4 */
if ( H5PB__read_raw(f, type, addr, size, buf) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"H5PB_read_raw() failed")
} else { /* cases 6, 7, 8, 9, and 10 */
if ( H5PB__read_meta(f, type, addr, size, buf) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"H5PB_read_meta() failed")
}
H5PB__UPDATE_STATS_FOR_ACCESS(pb_ptr, type, size);
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB_read() */
/*-------------------------------------------------------------------------
*
* Function: H5PB_remove_entry
*
* Purpose: Remove possible metadata entry with ADDR from the PB cache.
*
* This is in response to the data corruption bug from fheap.c
* with page buffering + page strategy.
*
* Note: Large metadata page bypasses the PB cache.
*
* Note: Update of raw data page (large or small sized) is
* handled by the PB cache.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Vailin Choi; Feb 2017
*
* Changes: Reworked function for re-implementation of the page buffer.
*
* In the context of VFD SWMR, it is possible that the
* discarded page or multi-page metadata entry has been
* modified during the current tick and/or is subject to a
* delayed write. We must detect this, and remove the entry
* from the tick list and/or delayed write list before it is
* evicted.
*
* Vailin: I think we need to do this for raw data as well.
*
* JRM -- 10/23/18
*
* We also need to evict modified pages from the page
* buffer in the VFD SWMR reader case to avoid message from
* the past bugs. This function will serve for this for
* now, but for efficiency, we may want a version that takes
* a list of pages instead.
*
* JRM -- 12/30/18
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_remove_entry(const H5F_t *f, haddr_t addr)
{
uint64_t page;
H5PB_t *pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
/* Calculate the page offset */
page = (addr / pb_ptr->page_size);
HDassert(addr == page * pb_ptr->page_size);
/* Search for page in the hash table */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
if ( entry_ptr ) {
HDassert(entry_ptr->addr == addr);
/* A page or a metadata multi-page with vfd_swmr_writer (case 7) */
HDassert( (entry_ptr->size == pb_ptr->page_size) ||
(entry_ptr->size > pb_ptr->page_size &&
entry_ptr->mem_type != H5FD_MEM_DRAW &&
pb_ptr->vfd_swmr_writer) );
if ( entry_ptr->modified_this_tick ) {
H5PB__REMOVE_FROM_TL(pb_ptr, entry_ptr, FAIL);
entry_ptr->modified_this_tick = FALSE;
}
if ( entry_ptr->delay_write_until > 0 ) {
entry_ptr->delay_write_until = 0;
H5PB__REMOVE_FROM_DWL(pb_ptr, entry_ptr, FAIL)
if ( ! ( entry_ptr->is_mpmde ) ) {
H5PB__UPDATE_RP_FOR_INSERTION(pb_ptr, entry_ptr, FAIL);
}
}
/* if the entry is dirty, mark it clean before we evict */
if ( ( entry_ptr->is_dirty ) &&
( H5PB__mark_entry_clean(pb_ptr, entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry clean failed")
if ( H5PB__evict_entry(pb_ptr, entry_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, "forced eviction failed")
/* Do we need to remove the entry from the metadata file index in
* the VFD SWMR case?
*
* Probably yes -- suppose a page is deallocated, and a multipage
* metadata entry is allocated at the same base address. This would
* change the metadata file entry size.
*
* However, this is sufficiently improbably that it doesn't cause
* problems (that I know of) at present.
*
* Unless it does, hold off on this until we add code to allow entries
* to age out of the metadata file index, as that will give us the
* necessary infrastructure.
*
* JRM -- 12/6/18
*/
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_remove_entry */
/*-------------------------------------------------------------------------
*
* Function: H5PB_update_entry
*
* Purpose: In PHDF5, metadata cache entries that are written by other
* processes are simply marked clean in the current process.
* However, if the page buffer is enabled, entries marked
* clean must still be written to the page buffer so as to
* keep the contents of metadata pages consistent on all
* processes.
*
* Do this as follows:
*
* 1) Test to see if the page buffer is configured to accept
* metadata pages. If it isn't, return.
*
* 2) Test to see if the page buffer contains the page that
* contains the supplied metadata cache entry. If it
* doesn't, return.
*
* 3) Write the supplied buffer to page at the appropriate
* offset.
*
* Note that at present, page buffering is disabled in the
* parallel case. Thus this function has not been tested.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/23/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_update_entry(H5PB_t *pb_ptr, haddr_t addr, size_t size, const void *buf)
{
uint64_t page;
size_t offset;
H5PB_entry_t *entry_ptr = NULL;
haddr_t page_addr;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(size > 0);
HDassert(size <= pb_ptr->page_size);
HDassert(buf);
if ( pb_ptr->min_rd_pages < pb_ptr->max_pages ) {
/* page buffer is configured to accept metadata pages */
/* Calculate the aligned address of the containing page */
page = (addr / pb_ptr->page_size);
page_addr = page * pb_ptr->page_size;
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
if ( entry_ptr ) {
HDassert( entry_ptr->is_metadata );
HDassert( ! (entry_ptr->is_mpmde) );
HDassert(addr + size <= page_addr + pb_ptr->page_size);
offset = addr - page_addr;
HDmemcpy(((uint8_t *)(entry_ptr->image_ptr) + offset),
buf, size);
/* should we mark the page dirty? If so, replace the following
* with a call to H5PB__mark_entry_dirty()
*/
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_update_entry */
/*-------------------------------------------------------------------------
*
* Function: H5PB_vfd_swmr__release_delayed_writes
*
* Purpose: After the tick list has been released, and before the
* beginning of the next tick, we must scan the delayed
* write list, and release those entries whose delays have
* expired.
*
* Note that pages of metadata, and multi-page metadata entries
* are handled differently.
*
* Regular pages are removed from the delayed write list and
* inserted in the replacement policy
*
* In contrast, multi-page metadata entries are simply
* flushed and evicted.
*
* Since the delayed write list is sorted in decreasing
* delay_write_until order, we start our scan at the bottom
* of the delayed write list and continue upwards until no
* expired entries remain.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 11/15/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_vfd_swmr__release_delayed_writes(H5F_t * f)
{
H5PB_t * pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->vfd_swmr);
HDassert(f->shared->vfd_swmr_writer);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->vfd_swmr_writer);
while ( ( pb_ptr->dwl_tail_ptr ) &&
( pb_ptr->dwl_tail_ptr->delay_write_until <
f->shared->tick_num ) ) {
entry_ptr = pb_ptr->dwl_tail_ptr;
HDassert(entry_ptr->is_dirty);
entry_ptr->delay_write_until = 0;
H5PB__REMOVE_FROM_DWL(pb_ptr, entry_ptr, FAIL)
if ( entry_ptr->is_mpmde ) { /* flush and evict now */
if ( H5PB__flush_entry(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"flush of mpmde failed")
if ( H5PB__evict_entry(pb_ptr, entry_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"eviction of mpmde failed")
} else { /* insert it in the replacement policy */
H5PB__UPDATE_RP_FOR_INSERT_APPEND(pb_ptr, entry_ptr, FAIL)
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_vfd_swmr__release_delayed_writes() */
/*-------------------------------------------------------------------------
*
* Function: H5PB_vfd_swmr__release_tick_list
*
* Purpose: After the metadata file has been updated, and before the
* beginning of the next tick, we must release the tick list.
*
* This function performs this function.
*
* In passing, flush and evict any multi-page metadata entries
* that are not subject to a delayed write.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 11/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_vfd_swmr__release_tick_list(H5F_t * f)
{
H5PB_t * pb_ptr = NULL;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->vfd_swmr);
HDassert(f->shared->vfd_swmr_writer);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->vfd_swmr_writer);
/* remove all entries from the tick list */
while ( pb_ptr->tl_head_ptr ) {
entry_ptr = pb_ptr->tl_head_ptr;
H5PB__REMOVE_FROM_TL(pb_ptr, entry_ptr, FAIL)
entry_ptr->modified_this_tick = FALSE;
if ( entry_ptr->is_mpmde ) {
HDassert(entry_ptr->is_dirty);
if ( entry_ptr->delay_write_until == 0 ) {
/* flush and evict the multi-page metadata entry immediately */
if ( H5PB__flush_entry(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"flush of mpmde failed")
if ( H5PB__evict_entry(pb_ptr, entry_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"eviction of mpmde failed")
}
}
/* if the entry is not a multi-page metadata entry, it must already
* be on either the replacment policy or the delayed write list.
* In either case, it will be flush when possible and necessary.
*/
}
HDassert(pb_ptr->tl_head_ptr == NULL);
HDassert(pb_ptr->tl_tail_ptr == NULL);
HDassert(pb_ptr->tl_len == 0);
HDassert(pb_ptr->tl_size == 0);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_vfd_swmr__release_tick_list */
/*-------------------------------------------------------------------------
*
* Function: H5PB_vfd_swmr__set_tick
*
* Purpose: At the beginning of each tick, the page buffer must be told
* to synchronize its copy of the current tick with that of
* the file to which the page buffer belongs.
*
* This function performs this function.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 11/20/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_vfd_swmr__set_tick(H5F_t * f)
{
H5PB_t * pb_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->vfd_swmr);
HDassert(f->shared->vfd_swmr_writer);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->vfd_swmr_writer);
/* the tick must always increase by 1 -- verify this */
if ( f->shared->tick_num != pb_ptr->cur_tick + 1 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"f->shared->tick_num != pb_ptr->cur_tick + 1 ?!?!")
pb_ptr->cur_tick = f->shared->tick_num;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_vfd_swmr__release_tick_list */
/*-------------------------------------------------------------------------
*
* Function: H5PB_vfd_swmr__update_index
*
* Purpose: In the VFD SWMR writer, all metadata writes to the page
* buffer during a tick are buffered in the page buffer in
* the tick list. Further, the metadata cache is flushed
* to the page buffer at the end of the tick so that all
* metadata changes during the tick are reflected in the
* tick list.
*
* Once this is done, the internal representation of the
* metadata file index must be updated from the tick list
* so that the metadata file can be updated, and the tick
* list can be emptied and prepared to buffer metadata changes
* in the next tick.
*
* This function is called to accomplish this. Its cycle of
* operation is as follows:
*
* 1) Scan the tick list. For each entry (*pbe_ptr), test
* to see if it appears in the index.
*
* If it does the entry must have been modified in the
* past tick. Update the index entry (*ie_ptr) as follows:
*
* a) Set ie_ptr->entry_ptr = pbe_ptr->image_ptr. This
* is needed to give the metadata file update code
* access to the image of the target page or multi-page
* multi-date entry. Note that ie_ptr->entry_ptr will
* be set to NULL as soon as the metadata file is updated,
* so the buffer pointed to by pbe_ptr->image_ptr can
* be safely discarded at any time after the metadata
* file update.
*
* b) Set ie_ptr->tick_of_last_change to the current tick.
*
* c) If pbe_ptr->is_dirty, set ie_ptr->clean to FALSE.
* If pbe_ptr->is_dirty is FALSE, set ie_ptr->clean
* to TRUE and set ie_ptr->tick_of_last_flush to the
* current tick.
*
* If the tick list entry (*pbe_ptr) doesn't appear in
* the index, allocate a metadata file index entry (*ie_ptr),
* and initialize it as follows:
*
* ie_ptr->hdf5_page_offset = pbe_ptr->page
* ie_ptr->length = pbe_ptr->size
* ie_ptr->delayed_flush = pbe_ptr->delay_write_until
*
* and then update the new entry as per the existing entry
* case described above.
*
* 2) Scan the internal representation of the metadata file
* index for entries that do not appear in the tick list.
* For each such entry (*ie_ptr), proceed as follows:
*
* 1) If ie_ptr->clean, we are done -- proceed to the
* next index entry that doesn't appear in the tick list.
*
* 2) Test to see if the cognate entry appears in the page
* buffer. If it doesn't, it must have been flushed and
* evicted in the past tick. Set
*
* ie_ptr->clean = TRUE, and
*
* ie_ptr->tick_of_last_flush = current tick
*
* and proceed to the next index entry that doesn't
* appear in the tick list.
*
* 3) If the cognate entry does appear in the page buffer
* and is clean, proceed as per 2) above.
*
* 4) In all other cases, do nothing, and proceed to the
* next index entry that does not appear in the tick list.
*
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 11/9/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_vfd_swmr__update_index(H5F_t * f,
uint32_t * idx_ent_added_ptr,
uint32_t * idx_ent_modified_ptr,
uint32_t * idx_ent_not_in_tl_ptr,
uint32_t * idx_ent_not_in_tl_flushed_ptr)
{
uint32_t i;
uint32_t idx_ent_added = 0;
uint32_t idx_ent_modified = 0;
uint32_t idx_ent_not_in_tl = 0;
uint32_t idx_ent_not_in_tl_flushed = 0;
H5PB_t * pb_ptr = NULL;
H5PB_entry_t *pbe_ptr = NULL;
H5FD_vfd_swmr_idx_entry_t * ie_ptr = NULL;
H5FD_vfd_swmr_idx_entry_t * idx = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->vfd_swmr);
HDassert(f->shared->vfd_swmr_writer);
idx = f->shared->mdf_idx;
HDassert(idx);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->vfd_swmr_writer);
HDassert(idx_ent_added_ptr);
HDassert(idx_ent_modified_ptr);
HDassert(idx_ent_not_in_tl_ptr);
HDassert(idx_ent_not_in_tl_flushed_ptr);
/* scan the tick list and insert or update metadata file index entries
* as appropriate.
*/
pbe_ptr = pb_ptr->tl_head_ptr;
while ( pbe_ptr ) {
uint64_t target_page;
int32_t top;
int32_t bottom;
int32_t probe;
HDassert(pbe_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
/* do a binary search on the metadata file index to see if
* it already contains an entry for *pbe_ptr.
*/
ie_ptr = NULL;
top = f->shared->mdf_idx_entries_used - 1;
bottom = 0;
target_page = pbe_ptr->page;
while ( top >= bottom ) {
probe = (top + bottom) / 2;
if ( idx[probe].hdf5_page_offset < target_page ) {
bottom = probe + 1;
} else if ( idx[probe].hdf5_page_offset > target_page ) {
top = probe - 1;
} else { /* found it */
ie_ptr = idx + probe;
bottom = top + 1; /* to exit loop */
}
}
if ( ie_ptr == NULL ) { /* alloc new entry in the metadata file index*/
/* for now the metadata file index is of fixed size -- if we
* exceed the maximum size, just abort.
*
* Obviously, this must be fixed for the production version.
*/
uint32_t new_index_entry_index;
new_index_entry_index = f->shared->mdf_idx_entries_used +
idx_ent_added++;
if ( new_index_entry_index >= f->shared->mdf_idx_len ) {
HDfprintf(stderr, "\n\nmax mdf index len (%d)exceeded.\n\n",
f->shared->mdf_idx_len);
HDfprintf(stderr, "tick = %lld.\n", f->shared->tick_num);
exit(1);
}
ie_ptr = idx + new_index_entry_index;
/* partial initialization of new entry -- rest done later */
ie_ptr->hdf5_page_offset = target_page;
ie_ptr->md_file_page_offset = 0; /* undefined at this point */
ie_ptr->length = (uint32_t)(pbe_ptr->size);
ie_ptr->chksum = 0; /* undefined at this point */
/* ie_ptr->entry_ptr initialized below */
/* ie_ptr->tick_of_last_change initialized below */
/* ie_ptr->clean initialized below */
/* ie_ptr->tick_of_last_flush initialized below */
ie_ptr->delayed_flush = pbe_ptr->delay_write_until;
ie_ptr->moved_to_hdf5_file = FALSE;
} else {
idx_ent_modified++;
}
ie_ptr->entry_ptr = pbe_ptr->image_ptr;
ie_ptr->tick_of_last_change = f->shared->tick_num;
ie_ptr->clean = !(pbe_ptr->is_dirty);
if ( ie_ptr->clean ) {
ie_ptr->tick_of_last_flush = f->shared->tick_num;
} else {
ie_ptr->tick_of_last_flush = 0;
}
HDassert(ie_ptr);
pbe_ptr = pbe_ptr->tl_next;
}
/* scan the metadata file index for entries that don't appear in the
* tick list. If the index entry is dirty, and either doesn't appear
* in the page buffer, or is clean in the page buffer, mark the index
* entry clean and as having been flushed in the current tick.
*/
for ( i = 0; i < f->shared->mdf_idx_entries_used; i++ ) {
HDassert( ( i == 0 ) ||
( idx[i - 1].hdf5_page_offset < idx[i].hdf5_page_offset ) );
if ( idx[i].tick_of_last_change < f->shared->tick_num ) {
idx_ent_not_in_tl++;
ie_ptr = idx + i;
if ( ! ( ie_ptr->clean ) ) {
H5PB__SEARCH_INDEX(pb_ptr, ie_ptr->hdf5_page_offset, \
pbe_ptr, FAIL);
if ( ( ! pbe_ptr ) || ( ! ( pbe_ptr->is_dirty ) ) ) {
idx_ent_not_in_tl_flushed++;
ie_ptr->clean = TRUE;
ie_ptr->tick_of_last_flush = f->shared->tick_num;
}
}
}
}
HDassert(idx_ent_modified + idx_ent_not_in_tl ==
f->shared->mdf_idx_entries_used);
HDassert(idx_ent_modified + idx_ent_not_in_tl + idx_ent_added <=
f->shared->mdf_idx_len);
*idx_ent_added_ptr = idx_ent_added;
*idx_ent_modified_ptr = idx_ent_modified;
*idx_ent_not_in_tl_ptr = idx_ent_not_in_tl;
*idx_ent_not_in_tl_flushed_ptr = idx_ent_not_in_tl_flushed;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_vfd_swmr__update_index */
/*-------------------------------------------------------------------------
*
* Function: H5PB_write
*
* Purpose: Write data into the Page Buffer if practical, and to file
* otherwise. Specifically:
*
* 1) If the page buffer is disabled, simply write to the
* HDF5 file and return.
*
* 2) If the write is raw data, and the page buffer is
* configured for metadata only (i.e. min_md_pages ==
* max_pages), simply write to the HDF5 file and return.
*
* 3) If the write is raw data, and it of page size or
* larger, write directly from the HDF5 file.
*
* It is possible that the write intersects one or more
* pages in the page buffer -- test for this and update
* any partially written pages, and evict any pages
* that are completely overwritten.
*
* Note that no pages are inserted into the page buffer in
* this case.
*
* 4) If the write is of raw data, and it is of size less
* than the page size, write the page into the page
* buffer, loading and inserting pages into the
* page buffer as necessary
*
* 5) If the write is of metadata, and the page buffer is
* configured for raw data only (i.e. min_rd_pages ==
* max_pages), simply write to the HDF5 file and return.
*
* 6) If the write is of metadata, the write is larger than
* one page, and vfd_swmr_writer is FALSE, simply read
* from the HDF5 file. There is no need to check the
* page buffer, as metadata is always read atomically,
* and entries of this size are not buffered in the page
* buffer.
*
* 7) If the write is of metadata, the write is larger than
* one page, and vfd_swmr_writer is TRUE, the write must
* buffered in the page buffer until the end of the tick.
*
* If it doesn't exist already, create a multi-page metadata
* entry in the page buffer and copy the write into it.
* Insert the new entry in the tick list if necessary.
*
* Test to see if the write of the multi-page metadata
* entry must be delayed. If so, place the entry in
* the delayed write list. Otherwise, the multi-page
* metadata entry will be written to the HDF5 file and
* evicted when the tick list is released at the of the
* tick.
*
*
* 8) If the write is of metadata, and the write is of size
* less than or equal to the page size, write the data
* into the page buffer, loading and inserting a page
* if necessary.
*
* If, in addition, vfd_swmr_writer is TRUE, add the page
* touched by the write to the tick list.
*
* Observe that this function handles casses 1, 2, 5, and 6
* directly, calls H5PB_write_raw() for cases 3 & 4, and
* calls H5PB_read_meta() for cases 7, and 8.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB_write(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
const void *buf)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
hbool_t bypass_pb = FALSE; /* Whether to bypass page buffering */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(type != H5FD_MEM_GHEAP);
pb_ptr = f->shared->pb_ptr;
if ( pb_ptr == NULL ) {
bypass_pb = TRUE; /* case 1) -- page buffer is disabled */
} else {
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
if ( H5FD_MEM_DRAW == type ) { /* raw data write */
if ( pb_ptr->min_md_pages == pb_ptr->max_pages ) {
/* case 2) -- page buffer configured for metadata only */
bypass_pb = TRUE;
}
} else { /* metadata write */
if ( pb_ptr->min_rd_pages == pb_ptr->max_pages ) {
/* case 5) -- page buffer configured for raw data only */
bypass_pb = TRUE;
} else if ( ( size >= pb_ptr->page_size ) &&
( ! ( pb_ptr->vfd_swmr_writer ) ) ) {
/* case 6) -- md read larger than one page and
* pb_ptr->vfd_swmr_writer is FALSE.
*/
bypass_pb = TRUE;
}
}
}
#ifdef H5_HAVE_PARALLEL
/* at present, the page buffer must be disabled in the parallel case.
* However, just in case ...
*/
if(H5F_HAS_FEATURE(f, H5FD_FEAT_HAS_MPI)) {
bypass_pb = TRUE;
} /* end if */
#endif /* H5_HAVE_PARALLEL */
if ( bypass_pb ) { /* cases 1, 2. 5, and 6 */
#if VFD_IO
if ( H5FD_write(f->shared->lf, type, addr, size, buf) < 0 )
#else /* VFD_IO */
if ( H5F__accum_write(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"write through metadata accumulator failed")
/* Update statistics */
if ( pb_ptr ) {
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
}
} else {
if ( H5FD_MEM_DRAW == type ) { /* cases 3 and 4 */
if ( H5PB__write_raw(f, type, addr, size, buf) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"H5PB_read_raw() failed")
} else { /* cases 7, and 8 */
if ( H5PB__write_meta(f, type, addr, size, buf) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"H5PB_read_meta() failed")
}
H5PB__UPDATE_STATS_FOR_ACCESS(pb_ptr, type, size);
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB_write() */
/**************************************************************************/
/***************************** STATIC FUNCTIONS ***************************/
/**************************************************************************/
/*-------------------------------------------------------------------------
*
* Function: H5PB__allocate_page
*
* Purpose: Allocate an instance of H5PB_entry_t and its associated
* buffer. The supplied size must be greater than or
* equal to pb_ptr->page_size, and equal to that value if
* pb_ptr->vfd_swmr_writer is FALSE.
*
* The associated buffer is zeroed if clean_image is TRUE.
*
* Return: Pointer to the newly allocated instance of H5PB_entry_t
* on success, and NULL on failure.
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static H5PB_entry_t *
H5PB__allocate_page(H5PB_t *pb_ptr, size_t size, hbool_t clean_image)
{
H5PB_entry_t *entry_ptr = NULL;
void * image_ptr = NULL;
H5PB_entry_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI(NULL)
/* sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(size >= pb_ptr->page_size);
HDassert((size == pb_ptr->page_size) || (pb_ptr->vfd_swmr_writer));
/* allocate the entry and its associated image buffer */
if ( NULL == (entry_ptr = H5FL_MALLOC(H5PB_entry_t)))
HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, NULL, \
"memory allocation for H5PB_entry_t failed")
if ( clean_image ) {
image_ptr = H5MM_calloc(size);
} else {
image_ptr = H5MM_malloc(size);
}
if ( NULL == image_ptr )
HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, NULL, \
"memory allocation for page image failed")
/* initialize the new page buffer entry */
entry_ptr->magic = H5PB__H5PB_ENTRY_T_MAGIC;
entry_ptr->pb_ptr = pb_ptr;
entry_ptr->addr = HADDR_UNDEF;
entry_ptr->page = 0;
entry_ptr->size = size;
entry_ptr->image_ptr = image_ptr;
entry_ptr->mem_type = H5FD_MEM_DEFAULT;
entry_ptr->is_metadata = FALSE;
entry_ptr->is_mpmde = FALSE;
entry_ptr->is_dirty = FALSE;
/* fields supporting the hash table */
entry_ptr->ht_prev = NULL;
entry_ptr->ht_next = NULL;
entry_ptr->il_prev = NULL;
entry_ptr->il_next = NULL;
/* fields supporting replacement policise */
entry_ptr->next = NULL;
entry_ptr->prev = NULL;
/* fields supporting VFD SWMR */
entry_ptr->is_mpmde = FALSE;
entry_ptr->loaded = FALSE;
entry_ptr->modified_this_tick = FALSE;
entry_ptr->delay_write_until = 0;
entry_ptr->tl_next = NULL;
entry_ptr->tl_prev = NULL;
ret_value = entry_ptr;
done:
if ( NULL == ret_value ) {
if ( entry_ptr ) {
entry_ptr->magic = 0;
entry_ptr = H5FL_FREE(H5PB_entry_t, entry_ptr);
}
if ( image_ptr ) {
image_ptr = H5MM_xfree(image_ptr);
}
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__allocate_page() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__create_new_page
*
* Purpose: Create a new page and insert it in the page buffer with
* the specified address and type. If entry_ptr_ptr is not
* NULL, return a pointer to the new entry in *entry_ptr_ptr.
*
* Throw an error if a page already exists at the specified
* address.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
herr_t
H5PB__create_new_page(H5PB_t *pb_ptr, haddr_t addr, size_t size,
H5FD_mem_t type, hbool_t clean_image, H5PB_entry_t **entry_ptr_ptr)
{
hbool_t inserted_in_index = FALSE;
hbool_t inserted_in_lru = FALSE;
uint64_t page;
H5PB_entry_t *entry_ptr = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
page = (uint64_t)addr / (uint64_t)(pb_ptr->page_size);
HDassert((uint64_t)(addr) == (page * (uint64_t)(pb_ptr->page_size)));
HDassert(size >= pb_ptr->page_size);
HDassert((size == pb_ptr->page_size) ||
((pb_ptr->vfd_swmr_writer) && (type != H5FD_MEM_DRAW)));
HDassert((NULL == entry_ptr_ptr) || (NULL == *entry_ptr_ptr));
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL);
if ( entry_ptr != NULL ) {
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"page buffer already contains a page at the specified address")
}
entry_ptr = H5PB__allocate_page(pb_ptr, size, clean_image);
if ( NULL == entry_ptr )
HGOTO_ERROR(H5E_PAGEBUF, H5E_NOSPACE, FAIL, \
"Can't allocate new page buffer entry")
/* perform additional initialization */
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->pb_ptr == pb_ptr);
entry_ptr->addr = addr;
entry_ptr->page = page;
HDassert(entry_ptr->size == size);
HDassert(entry_ptr->image_ptr);
entry_ptr->mem_type = type;
entry_ptr->is_metadata = (type != H5FD_MEM_DRAW);
entry_ptr->is_mpmde = ((entry_ptr->is_metadata) &&
(size > pb_ptr->page_size));
entry_ptr->is_dirty = FALSE;
/* insert in the hash table */
H5PB__INSERT_IN_INDEX(pb_ptr, entry_ptr, FAIL)
inserted_in_index = TRUE;
/* insert at the head of the LRU if it isn't a multi-page metadata entry */
if ( ! entry_ptr->is_mpmde ) {
H5PB__UPDATE_RP_FOR_INSERTION(pb_ptr, entry_ptr, FAIL)
inserted_in_lru = TRUE;
}
/* updates stats */
H5PB__UPDATE_STATS_FOR_INSERTION(pb_ptr, entry_ptr);
if ( entry_ptr_ptr ) {
*entry_ptr_ptr = entry_ptr;
}
done:
if ( ret_value < 0 ) {
if ( entry_ptr ) {
if ( inserted_in_lru ) {
H5PB__UPDATE_RP_FOR_EVICTION(pb_ptr, entry_ptr, FAIL);
}
if ( inserted_in_index ) {
H5PB__DELETE_FROM_INDEX(pb_ptr, entry_ptr, FAIL)
}
H5PB__deallocate_page(entry_ptr);
entry_ptr = NULL;
}
}
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB_add_new_page */
/*-------------------------------------------------------------------------
*
* Function: H5PB__deallocate_page
*
* Purpose: Free the supplied instance of H5PB_entry_t and its
* associated buffer. The entry must be clean and removed
* from the page buffer before this function is called.
*
* Return: void
*
* Programmer: John Mainzer -- 10/12/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static void
H5PB__deallocate_page(H5PB_entry_t *entry_ptr)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* sanity checks */
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->size > 0);
HDassert(entry_ptr->image_ptr);
HDassert(!(entry_ptr->is_dirty));
HDassert(entry_ptr->ht_next == NULL);
HDassert(entry_ptr->ht_prev == NULL);
HDassert(entry_ptr->il_next == NULL);
HDassert(entry_ptr->il_prev == NULL);
HDassert(entry_ptr->next == NULL);
HDassert(entry_ptr->prev == NULL);
HDassert(entry_ptr->tl_next == NULL);
HDassert(entry_ptr->tl_prev == NULL);
entry_ptr->magic = 0;
entry_ptr->image_ptr = H5MM_xfree(entry_ptr->image_ptr);
entry_ptr = H5FL_FREE(H5PB_entry_t, entry_ptr);
FUNC_LEAVE_NOAPI_VOID
} /* H5PB__deallocate_page() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__evict_entry
*
* Purpose: Evict the target entry from the from the page buffer, and
* de-allocate its associated image and instance of
* H5PB_entry_t.
*
* In general, entries must be clean before they can be
* evicted, and the minimum metadata and raw data limits
* must be respected. Attempts to evict an entry that
* that do not respect these constraints will generate
* and error unless the force parameter is TRUE, in which
* case, these constraints are igmored.
*
* In the context of VFD SWMR, there is also the requirement
* that entries to be evicted not be on the tick list, and
* also not reside on the delayed write list. In the rare
* case in which such a page is discarded by the free space
* manager, it must be removed from the tick list and/or the
* delayed write list before being evicted by this function.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/14/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__evict_entry(H5PB_t *pb_ptr, H5PB_entry_t *entry_ptr, hbool_t force)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->size > 0);
HDassert(entry_ptr->image_ptr);
/* entries on either the tick list or the delayed write
* list may not be evicted -- verify this.
*/
HDassert(!(entry_ptr->modified_this_tick));
HDassert(entry_ptr->delay_write_until == 0);
if ( ( ! force ) && ( entry_ptr->is_dirty ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"Attempt to evict a dirty entry");
if ( ! force ) {
/* it is OK to evict an metadata page if pb_ptr->curr_md_pages ==
* pb_ptr->min_md_pages - 1 if we are about to replace it with another
* metadata page.
*
* Similarly, it is OK to evict an raw data page if
* pb_ptr->curr_rd_pages == pb_ptr->min_rd_pages - 1 if we are
* about to replace it with another raw data page.
*
* Assume sanity checks have been made before this call, and
* allow the above without testing the intended replacement.
*/
if ( ( entry_ptr->is_metadata ) &&
( pb_ptr->curr_md_pages < pb_ptr->min_md_pages ) ) {
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"Attempt to violate min_md_pages");
} else if ( ( ! entry_ptr->is_metadata ) &&
( pb_ptr->curr_rd_pages < pb_ptr->min_rd_pages ) ) {
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"Attempt to violate min_rd_pages");
}
} else if ( ( entry_ptr->is_dirty ) &&
( H5PB__mark_entry_clean(pb_ptr, entry_ptr) < 0 ) ) {
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, "mark entry clean failed")
}
/* if the entry is in the replacement policy, remove it */
if ( ! (entry_ptr->is_mpmde) ) {
H5PB__UPDATE_RP_FOR_EVICTION(pb_ptr, entry_ptr, FAIL)
}
/* remove the entry from the hash table */
H5PB__DELETE_FROM_INDEX(pb_ptr, entry_ptr, FAIL)
/* update stats for eviction */
H5PB__UPDATE_STATS_FOR_EVICTION(pb_ptr, entry_ptr)
/* deallocate the page */
H5PB__deallocate_page(entry_ptr);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__evict_entry() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__flush_entry
*
* Purpose: Flush the target entry to file.
*
* Under normal circumstances, the entry will be in the
* replacement policy. In this, also update the replacement
* policy for flush.
*
* If pb_ptr->vfd_swmr_writer, it is possible that the target
* is a multi-page metadata entry. In this case, the entry
* is not in the replacement policy, and thus the policy
* should not be updated.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/14/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__flush_entry(H5F_t *f, H5PB_t *pb_ptr, H5PB_entry_t *entry_ptr)
{
hbool_t skip_write = FALSE;
size_t write_size;
haddr_t eoa; /* Current EOA for the file */
#if VFD_IO /* JRM */
H5FD_t *file; /* file driver */
#endif /* VFD_IO */ /* JRM */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->lf);
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->size > 0);
HDassert(entry_ptr->size >= pb_ptr->page_size);
HDassert((entry_ptr->size == pb_ptr->page_size) || (entry_ptr->is_mpmde));
HDassert(entry_ptr->image_ptr);
HDassert(entry_ptr->is_dirty);
HDassert((pb_ptr->vfd_swmr_writer) || (!(entry_ptr->is_mpmde)));
HDassert((uint64_t)0 == (entry_ptr->delay_write_until));
/* Retrieve the 'eoa' for the file */
if ( HADDR_UNDEF == (eoa = H5F_get_eoa(f, entry_ptr->mem_type)) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_CANTGET, FAIL, \
"driver get_eoa request failed")
/* TODO: update the free space manager to inform the page buffer when
* space is de-allocated so that the following assertions will be
* true in all cases.
*/
/* Verify that the base addresss of the page is within the EOA. If it
* isn't, the associated page has been discarded and should have been
* removed from the page buffer. This is a bug in the HDF5 library, so
* an assertion is adequate here.
*/
HDassert( eoa > entry_ptr->addr );
/* Space at the end of the file should be allocate in increments of
* pages. Thus the entire page should be within the EOA. Again,
* an assertion is adequate here.
*/
HDassert( eoa >= entry_ptr->addr + entry_ptr->size );
write_size = entry_ptr->size;
/* flush the entry */
if ( ! skip_write ) {
#if VFD_IO /* JRM */
file = f->shared->lf;
if ( H5FD_write(file, entry_ptr->mem_type, entry_ptr->addr,
write_size, entry_ptr->image_ptr) < 0 )
#else /* VFD_IO */ /* JRM */
if ( H5F__accum_write(f, entry_ptr->mem_type, entry_ptr->addr,
write_size, entry_ptr->image_ptr) < 0 )
#endif /* VFD_IO */ /* JRM */
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, "file write failed")
}
/* mark the entry clean */
if ( H5PB__mark_entry_clean(pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, "mark entry clean failed")
/* if the entry is on the LRU, update the replacement policy */
if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
H5PB__UPDATE_RP_FOR_FLUSH(pb_ptr, entry_ptr, FAIL)
}
/* update stats for flush */
H5PB__UPDATE_STATS_FOR_FLUSH(pb_ptr, entry_ptr)
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__flush_entry() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__load_page
*
* Purpose: Load the page with the specified base address and insert
* it into the page buffer. If necessary and possible, make
* space for the new page first.
*
* Note that the size of the page is always pb_ptr->page_size,
* even in the VFD SWMR case, as in this context, multi-page
* metadata entries are always written in full, and they
* may only enter the page buffer as the result of a write.
*
* In the context of VFD SWMR, when an page is loaded from
* file, it is possible that the VFD SWMR writer must delay
* writes to the page to avoid the possibility of message from
* the future bugs on the VFD SWMR reader. For this reason,
* make note of the fact that the entry has be loaded from
* from file, so that the necessary checks can be made when
* writing to the page.
*
* Return: SUCCEED if no errors are encountered, and
* FAIL otherwise.
*
* Programmer: John Mainzer -- 10/18/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__load_page(H5F_t *f, H5PB_t *pb_ptr, haddr_t addr, H5FD_mem_t type,
H5PB_entry_t **entry_ptr_ptr)
{
hbool_t skip_read = FALSE;
haddr_t eoa;
haddr_t eof = HADDR_UNDEF;
H5PB_entry_t *entry_ptr = NULL;
void *image_ptr = NULL;
#if VFD_IO /* JRM */
H5FD_t *file; /* File driver pointer */
#endif /* VFD_IO */ /* JRM */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->lf);
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert((entry_ptr_ptr == NULL) || (*entry_ptr_ptr == NULL));
/* Retrieve the 'eoa' for the file */
if ( HADDR_UNDEF == (eoa = H5F_get_eoa(f, type)))
HGOTO_ERROR(H5E_PAGEBUF, H5E_CANTGET, FAIL, \
"driver get_eoa request failed")
#if 0 /* JRM */
if ( addr + ((haddr_t)(pb_ptr->page_size)) > eoa )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"Attempt to load page that extends past EOA")
#endif /* JRM */
if ( HADDR_UNDEF == (eof = H5FD_get_eof(f->shared->lf, H5FD_MEM_DEFAULT)) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_CANTGET, FAIL, \
"driver get_eof request failed")
/* It is possible that this page been allocated but not
* written. Skip the read if addr > EOF. In this case, tell
* H5PB__create_new_page() to zero the page image.
*
* Don't set "skip_read = (addr >= eof);" when accumulator is used.
*/
#if VFD_IO /* JRM */
skip_read = (addr >= eof);
#endif /* VFD_IO */ /* JRM */
/* make space in the page buffer if necessary */
if ( ( pb_ptr->curr_pages >= pb_ptr->max_pages ) &&
( H5PB__make_space(f, pb_ptr, type) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"H5PB__make_space() reports an error")
/* Create a new page buffer page and insert it into the page buffer */
if ( H5PB__create_new_page(pb_ptr, addr, (size_t)(pb_ptr->page_size),
type, skip_read, &entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"can't create new page buffer page")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == addr);
image_ptr = entry_ptr->image_ptr;
HDassert(image_ptr);
/* Read the contents of the page from file, and store it in the
* image buffer associated with the new entry.
*/
#if VFD_IO /* JRM */
file = f->shared->lf;
if ( ( ! skip_read ) &&
( H5FD_read(file, type, addr, entry_ptr->size, image_ptr) < 0 ) )
#else /* VFD_IO */ /* JRM */
if ( ( ! skip_read ) &&
( H5F__accum_read(f, type, addr, entry_ptr->size, image_ptr) < 0 ) )
#endif /* VFD_IO */ /* JRM */
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"driver read request failed")
/* If in fact the page was read from file, make note of this fact
* for purposes of VFD SWMR delayed writes in the VFD SWMR writer.
*/
entry_ptr->loaded = ! skip_read;
H5PB__UPDATE_STATS_FOR_LOAD(pb_ptr, entry_ptr)
if ( entry_ptr_ptr ) {
*entry_ptr_ptr = entry_ptr;
}
done:
/* add cleanup in case of failure */
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__load_page() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__make_space
*
* Purpose: Evict one or more pages from the page buffer so as to
* reduce the size of the page buffer to pb_ptr->max_pages - 1.
* if possible.
*
* Note that the function must not be called under
* non-sencicle conditions -- thus if either
*
* 1) the inserted type is metadata and min_rd_pages ==
* max_pages, or
*
* 2) the inserted type is raw data and min_md_pages ==
* max_pages
*
* holds, the function has been called in error, and an
* assertion failure is appropriate.
*
* If the page buffer is below its maximum size, we are
* done, and the function simply returns.
*
* Otherwise, scan upwards from the bottom of the LRU list,
* examining each entry in turn.
*
* If the entry is dirty, flush it, move it to the top of the
* LRU, and continue with the scan. Note in the VFD SWMR case,
* we do not have to concern ourselves with delayed writes in
* this context, as all entries which are subject to delayed
* writes must reside on the delayed write list, not the LRU list.
*
* If the entry is:
*
* 1) clean
*
* 2) either:
*
* a) the target entry is metadata and
* curr_md_pages > min_md_pages.
*
* b) the target entry is raw data and
* curr_rd_pages > min_rd_pages.
*
* c) the target entry is metadata, the inserted_type
* is metadata, and curr_md_pages == min_md_pages.
*
* d) the target entry is raw data, the inserted_type
* is raw data, and curr_rd_pages == min_rd_pages.
*
* 3) The entry is not on the tick list (which can only
* happen if pb_ptr->vfd_swmr_writer is TRUE).
*
* evict the entry and test to see if pb_ptr->curr_pages <
* pb_ptr->max_pages. If it is, return. Otherwise, continue
* the scan until either the above condidtion is fulfilled,
* or the head of the LRU is reach.
*
* Under normal circumstances, it should always be possible
* to reduce the size of the page buffer below pb_ptr->max_pages.
* However, due to prohibition on evicting entries on the
* tick list, and either flushing or evicting entries on the
* delayed write list, this will not in general be the case
* if pb_ptr->vfd_swmr_writer is TRUE. In this case, the
* page buffer may exceed its maximum size by an arbitrary
* amount.
*
* If this situation occurs with any regularity, we will
* need a mechanism to avoid attempts to make space when
* it is not possible to do so.
*
* Return: SUCCEED if no errors are encountered, and
* FAIL otherwise.
*
* Programmer: John Mainzer -- 10/14/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__make_space(H5F_t *f, H5PB_t *pb_ptr, H5FD_mem_t inserted_type)
{
hbool_t inserting_md;
H5PB_entry_t *search_ptr;
H5PB_entry_t *flush_ptr;
H5PB_entry_t *evict_ptr;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(f);
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->min_md_pages + pb_ptr->min_rd_pages <= pb_ptr->max_pages);
inserting_md = ( H5FD_MEM_DRAW != inserted_type );
if ( ( inserting_md ) && ( pb_ptr->min_rd_pages == pb_ptr->max_pages ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL,
"can't make space for metadata -- pb config for raw data only")
if ( ( ! inserting_md ) && ( pb_ptr->min_md_pages == pb_ptr->max_pages ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL,
"can't make space for raw data -- pb config for metadata only")
search_ptr = pb_ptr->LRU_tail_ptr;
while ( ( search_ptr ) && ( pb_ptr->curr_pages >= pb_ptr->max_pages ) ) {
HDassert(search_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
if ( search_ptr->modified_this_tick ) { /* entry is on tick list */
search_ptr = search_ptr->prev;
H5PB__UPDATE_STATS_FOR_LRU_TL_SKIP(pb_ptr);
} else if ( ( inserting_md ) &&
( ! (search_ptr->is_metadata) ) &&
( pb_ptr->curr_rd_pages <= pb_ptr->min_rd_pages ) ) {
search_ptr = search_ptr->prev;
H5PB__UPDATE_STATS_FOR_LRU_RD_SKIP(pb_ptr);
} else if ( ( ! inserting_md ) &&
( search_ptr->is_metadata ) &&
( pb_ptr->curr_md_pages <= pb_ptr->min_md_pages ) ) {
search_ptr = search_ptr->prev;
H5PB__UPDATE_STATS_FOR_LRU_MD_SKIP(pb_ptr);
} else if ( search_ptr->is_dirty ) {
/* One can make the argument that we should test for dirty
* entries first, instead of skipping potentially dirty
* entries in the above clauses. However, I suspect that
* this would result in excessive flushes. Lets try it
* this way for now.
*/
flush_ptr = search_ptr;
/* if the *search_ptr has a predecessor in the LRU,
* set set search_ptr equal to search_ptr->prev. Otherwise,
* leave search_ptr unchanged, so that it can be examined
* on the next pass through the while loop after it has been
* flushed.
*/
if ( search_ptr->prev ) {
search_ptr = search_ptr->prev;
}
if ( H5PB__flush_entry(f, pb_ptr, flush_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"Can't flush entry")
} else { /* evict the entry */
evict_ptr = search_ptr;
search_ptr = search_ptr->prev;
if ( H5PB__evict_entry(pb_ptr, evict_ptr, FALSE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"Can't evict entry")
}
}
HDassert( ( search_ptr == NULL ) ||
( pb_ptr->curr_pages < pb_ptr->max_pages ) );
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__make_space() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__mark_entry_clean
*
* Purpose: Mark the target entry clean
*
* This function is typically used when an entry has been
* completely overwritten and is about to be evicted. In
* this case, the entry must be marked clean to avoid
* sanity check failures on evictions.
*
* While this function does update the index for the
* entry clean, it does not update the replacement policy.
* If this is desired, it must be done by the caller.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/14/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__mark_entry_clean(H5PB_t *pb_ptr, H5PB_entry_t *entry_ptr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->size > 0);
HDassert(entry_ptr->size >= pb_ptr->page_size);
HDassert((entry_ptr->size == pb_ptr->page_size) || (entry_ptr->is_mpmde));
HDassert(entry_ptr->image_ptr);
HDassert((pb_ptr->vfd_swmr_writer) || (!(entry_ptr->is_mpmde)));
/* mark the entry clean */
entry_ptr->is_dirty = FALSE;
/* update the index for the entry clean */
H5PB__UPDATE_INDEX_FOR_ENTRY_CLEAN(pb_ptr, entry_ptr)
/* don't update the replacement policy -- this will be done by
* the caller if desired.
*/
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__mark_entry_clean() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__mark_entry_dirty
*
* Purpose: Mark the target entry as dirty.
*
* If pb_ptr->vfd_swmr_writer is FALSE, the entry will be
* in the replacement policy. In this, we simply mark the
* entry as dirty, and update the replacement policy for an
* access.
*
* If pb_ptr->vfd_swmr_writer, it is possible that we must
* delay writes to the target page or multi-page metadata
* entry to avoid message from the future bugs on the VFD
* SWMR readers. In such cases we must set the
* delay_write_until field and insert the entry on the
* delayed write list instead of the replacement policy.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/14/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__mark_entry_dirty(H5F_t * f, H5PB_t *pb_ptr, H5PB_entry_t *entry_ptr)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* sanity checks */
HDassert(pb_ptr);
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->size > 0);
HDassert(entry_ptr->size >= pb_ptr->page_size);
HDassert((entry_ptr->size == pb_ptr->page_size) || (entry_ptr->is_mpmde));
HDassert(entry_ptr->image_ptr);
HDassert((pb_ptr->vfd_swmr_writer) || (!(entry_ptr->is_mpmde)));
/* mark the entry dirty if necessary */
if ( ! ( entry_ptr->is_dirty ) ) {
entry_ptr->is_dirty = TRUE;
H5PB__UPDATE_INDEX_FOR_ENTRY_DIRTY(pb_ptr, entry_ptr)
/* since the entry was clean, there can be no pending delayed write */
HDassert(entry_ptr->delay_write_until == 0);
if ( ( pb_ptr->vfd_swmr_writer ) &&
( entry_ptr->loaded ) &&
( entry_ptr->mem_type != H5FD_MEM_DRAW ) &&
( H5F_vfd_swmr_writer__delay_write(f, entry_ptr->page,
&(entry_ptr->delay_write_until)) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"get delayed write request failed")
if ( entry_ptr->delay_write_until > 0 ) {
if ( ! ( entry_ptr->is_mpmde ) ) {
/* remove the entry from the replacement policy */
H5PB__UPDATE_RP_FOR_REMOVE(pb_ptr, entry_ptr, FAIL)
}
H5PB__INSERT_IN_DWL(pb_ptr, entry_ptr, FAIL)
} else if ( ! (entry_ptr->is_mpmde) ) {
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
} else {
/* the entry should be a multi-page metadata entry that
* has been modified this tick. Thus no action is required.
*/
HDassert(entry_ptr->is_mpmde);
HDassert(pb_ptr->vfd_swmr_writer);
}
} else if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
/* the entry is dirty and on the replacement policy -- just update
* the replacement policy for an access
*/
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5PB__mark_entry_dirty() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__read_meta
*
* Purpose: Satisfy a metadata read in cases 7, 8, 9, and 10)
* H5PB_read(). Specifically:
*
* 6) If the read is for metadata and not page aligned, clip
* the read to the end of the current page if necessary.
* Load the relevant page if necessary and satisfy the
* read from the page buffer. Note that it there is an
* existing page, it must not be a multi-page metadata
* entry. It it is, flag an error.
*
* 7) If the read is for metadata, is page aligned, is larger
* than one page, and there is no entry in the page buffer,
* satisfy the read from the file
*
* 8) If the read is for metadata, is page aligned, is larger
* than one page, and there is a regular entry at the target
* page address, test to see if the last read was for the
* same address.
*
* If was, evict the page, and satisfy the read from file.
* Flag an error if the page was dirty.
*
* If the last read was for a different page, clip the read
* to one page, and satisfy the read from the existing
* regular entry.
*
* 9) If the read is for metadata, is page aligned, is larger
* than one page, and there is a multi-page metadata entry
* at the target page address, test to see if
* pb_ptr->vfd_swmr_write is TRUE.
*
* If it is, satisfy the read from the multi-page metadata
* entry, clipping the read if necessary.
*
* if pb_ptr->vfd_swmr_write is FALSE, flag an error.
*
* 10) If the read is for metadata, is page aligned, is no
* larger than a page, test to see if the page buffer
* contains a page at the target address.
*
* If it doesn't, load the page and satisfy the read
* from it.
*
* If it contains a regular page entry, satisfy the read
* from it.
*
* If it contains a multipage metadata entry at the target
* address, satisfy the read from the multi-page metadata
* entry if pb_ptr->vfd_swmr_write is TRUE, and flag an
* error otherwise.
*
* The above case analysis may be a bit hard to read. If so,
* the table shown below may help to clarify. Here:
*
* P/A == page aligned
* size > PL == size > page length
* PA == previous address
* A == current address
*
* In the entry exists column:
*
* N == no entry
* R == regular (1 page) entry
* MPMDE == multi-page metadata entry
*
* | size | entry | VFD | |
* P/A: | > PL | exists | SWMR | PA == A | Comments:
* ------+------+--------+------+---------+-------------------------------------
* N | X | N || R | X | X | Clip read to page boundary if
* | | | | | necessary
* | | | | | Load entry if necessary
* | | | | | Satisfy read from entry (case 6)
* ------+------+--------+------+---------+-------------------------------------
* N | X | MPMDE | X | X | Error (case 6)
* ------+------+--------+------+---------+-------------------------------------
* | | | | |
* ------+------+--------+------+---------+-------------------------------------
* Y | Y | N | X | X | Satisfy read from file (case 7)
* ------+------+--------+------+---------+-------------------------------------
* Y | Y | R | X | N | Clip read to page boundary
* | | | | | Satisfy read from entry (case 8)
* ------+------+--------+------+---------+-------------------------------------
* Y | Y | R | X | Y | Evict entry
* | | | | | (must be clean -- flag error if not)
* | | | | | Satisfy read from file (case 8)
* ------+------+--------+------+---------+-------------------------------------
* Y | Y | MPMDE | N | X | Error (case 9)
* ------+------+--------+------+---------+-------------------------------------
* Y | Y | MPMDE | Y | X | Clip read to MPE size if required.
* | | | | | Satify read from MPE (case 9)
* ------+------+--------+------+---------+-------------------------------------
* | | | | |
* ------+------+--------+------+---------+-------------------------------------
* Y | N | N | X | X | Load entry
* | | | | | Satisfy read from entry (case 10)
* ------+------+--------+------+---------+-------------------------------------
* Y | N | R | X | X | Satisfy read from entry (case 10)
* ------+------+--------+------+---------+-------------------------------------
* Y | N | MPMDE | Y | X | Satisfy read from entry (case 10)
* ------+------+--------+------+---------+-------------------------------------
* Y | N | MPMDE | N | X | Error (case 10)
* ------+------+--------+------+---------+-------------------------------------
*
* Observe that the above cases imply that:
*
* 1) The page buffer is defined.
*
* 2) The page buffer has been configured to accept at least
* one page of metadata.
*
* 3) This is a metadata read.
*
* Note also that if the metadata read is of size
* no larger than page size, it may not cross page
* boundaries.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__read_meta(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
void *buf/*out*/)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
H5PB_entry_t *entry_ptr; /* Pointer to page buffer entry */
#if VFD_IO /* JRM */
H5FD_t *file; /* File driver pointer */
#endif /* VFD_IO */ /* JRM */
uint64_t page; /* page offset of addr */
haddr_t page_addr; /* page containg addr */
static haddr_t prev_addr = HADDR_UNDEF; /* addr of last call */
size_t offset; /* offset of read in page */
size_t clipped_size; /* possibley clipped size */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->min_rd_pages < pb_ptr->max_pages);
HDassert(f->shared->lf);
#if VFD_IO /* JRM */
file = f->shared->lf;
#endif /* VFD_IO */ /* JRM */
HDassert(H5FD_MEM_DRAW != type);
HDassert(buf);
/* Calculate the aligned address of the first page */
page = (addr / pb_ptr->page_size);
page_addr = page * pb_ptr->page_size;
if ( page_addr != addr ) { /* case 6 */
/* If the read is for metadata and not page aligned, clip
* the read to the end of the current page if necessary.
* Load the relevant page if necessary and satisfy the
* read from the page buffer. Note that it there is an
* existing page, it must not be a multi-page metadata
* entry. It it is, flag an error.
*/
offset = addr - page_addr;
if ( (offset + size) <= pb_ptr->page_size ) {
clipped_size = size;
} else {
clipped_size = size - ( (offset + size) - pb_ptr->page_size);
}
HDassert( clipped_size > 0 );
HDassert( clipped_size <= size );
HDassert( (offset + clipped_size) <= pb_ptr->page_size );
/* get the containing page */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, ((entry_ptr) != NULL), \
TRUE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, page_addr, type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (1)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == page_addr);
HDassert(entry_ptr->is_metadata);
HDassert(!(entry_ptr->is_mpmde));
/* copy data from the page into read buffer */
HDmemcpy((uint8_t *)buf, (uint8_t *)(entry_ptr->image_ptr) + offset,
clipped_size);
/* if the entry is on the LRU, update the replacement policy */
if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
} else {
HDassert( page_addr == addr );
if ( size >= pb_ptr->page_size ) {
/* search the page buffer for an entry at page */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
if ( entry_ptr == NULL ) { /* case 7 */
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, FALSE, TRUE, size > pb_ptr->page_size)
/* If the read is for metadata, is page aligned, is larger
* than one page, and there is no entry in the page buffer,
* satisfy the read from the file
*/
#if VFD_IO /* JRM */
if ( H5FD_read(file, type, addr, size, buf) < 0)
#else /* VFD_IO */ /* JRM */
if ( H5F__accum_read(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */ /* JRM */
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"driver read request failed (1)")
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
} else {
HDassert( entry_ptr );
HDassert( entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC );
HDassert( entry_ptr->is_metadata );
if ( ! ( entry_ptr->is_mpmde ) ) { /* case 8 */
/* If the read is for metadata, is page aligned, is larger
* than one page, and there is a regular entry at the target
* page address, test to see if the last read was for the
* same address.
*
* If was, evict the page, and satisfy the read from file.
* Flag an error if the page was dirty.
*
* If the last read was for a different page, clip the read
* to one page, and satisfy the read from the existing
* regular entry.
*/
HDassert( entry_ptr->size == pb_ptr->page_size );
if ( addr == prev_addr ) {
/* since this is a second try, don't update
* hit rate stats.
*/
HDassert( ! ( entry_ptr->is_dirty ) );
if ( H5PB__evict_entry(pb_ptr, entry_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"forced eviction failed (1)")
#if VFD_IO /* JRM */
if ( H5FD_read(file, type, addr, size, buf) < 0)
#else /* VFD_IO */ /* JRM */
if ( H5F__accum_read(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */ /* JRM */
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"driver read request failed (2)")
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
} else {
HDassert( entry_ptr->image_ptr );
/* copy data from the page into read buffer */
HDmemcpy((uint8_t *)buf,
(uint8_t *)(entry_ptr->image_ptr),
entry_ptr->size);
/* if the entry is on the LRU, update the replacement
* policy
*/
if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, TRUE, TRUE, FALSE)
}
} else { /* case 9 */
/* If the read is for metadata, is page aligned, is larger
* than one page, and there is a multi-page metadata entry
* at the target page address, test to see if
* pb_ptr->vfd_swmr_write is TRUE.
*
* If it is, satisfy the read from the multi-page metadata
* entry, clipping the read if necessary.
*
* if pb_ptr->vfd_swmr_write is FALSE, flag an error.
*/
HDassert( entry_ptr->is_mpmde );
HDassert( pb_ptr->vfd_swmr_writer );
if ( size > entry_ptr->size ) {
clipped_size = entry_ptr->size;
} else {
clipped_size = size;
}
/* copy data from the page into read buffer */
HDmemcpy((uint8_t *)buf, (uint8_t *)(entry_ptr->image_ptr),
clipped_size);
/* if the entry is on the LRU, update the replacement
* policy
*/
if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, TRUE, TRUE, TRUE)
}
}
} else { /* case 10 */
/* If the read is for metadata, is page aligned, is no
* larger than a page, test to see if the page buffer
* contains a page at the target address.
*
* If it doesn't, load the page and satisfy the read
* from it.
*
* If it contains a regular page entry, satisfy the read
* from it.
*
* If it contains a multipage metadata entry at the target
* address, satisfy the read from the multi-page metadata
* entry if pb_ptr->vfd_swmr_write is TRUE, and flag an
* error otherwise.
*/
HDassert( size <= pb_ptr->page_size );
/* get the containing page */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
TRUE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, page_addr, type, &entry_ptr) < 0))
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (2)")
HDassert( entry_ptr );
HDassert( entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC );
HDassert( entry_ptr->is_metadata );
HDassert( ( ! ( entry_ptr->is_mpmde ) ) ||
( pb_ptr->vfd_swmr_writer) );
/* copy data from the page into read buffer */
HDmemcpy((uint8_t *)buf, (uint8_t *)(entry_ptr->image_ptr), size);
/* if the entry is on the LRU, update the replacement policy */
if ( ( ! (entry_ptr->is_mpmde) ) &&
( entry_ptr->delay_write_until == 0 ) ) {
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
}
}
prev_addr = addr;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB__read_meta() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__read_raw
*
* Purpose: Satisfy a raw data read in cases 3 and 4 from H5PB_read().
* Specifically:
*
* 3) If the read is for raw data, and it is larger than the
* page size, read it directly from the HDF5 file.
*
* It is possible that the page buffer contains dirty pages
* that intersect with the read -- test for this and update
* the read buffer from the page buffer if any such pages
* exist.
*
* Note that no pages are inserted into the page buffer in
* this case.
*
* 4) If the read is for raw data, and it is of size less
* than or equal to the page size, satisfy the read from
* the page buffer, loading and inserting pages into the
* page buffer as necessary
*
* Observe that this implies that:
*
* 1) The page buffer is defined.
*
* 2) The page buffer has been configured to accept at least
* one page of raw data.
*
* 2) This is a raw data read.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__read_raw(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
void *buf/*out*/)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
H5PB_entry_t *entry_ptr; /* Pointer to page buffer entry */
uint64_t first_page; /* page offset of first I/O */
uint64_t last_page; /* page offset of last I/O */
uint64_t search_page; /* page offset of current page */
haddr_t first_page_addr; /* address of first page of I/O */
haddr_t last_page_addr; /* address of last page of I/O */
haddr_t search_addr; /* Address of current page */
hsize_t num_touched_pages; /* Number of pages accessed */
size_t offset; /* offset of read in page */
size_t length; /* length of read in page */
hsize_t i; /* Local index variable */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->min_md_pages < pb_ptr->max_pages);
HDassert(H5FD_MEM_DRAW == type);
/* Calculate the aligned address of the first page */
first_page = (addr / pb_ptr->page_size);
first_page_addr = first_page * pb_ptr->page_size;
/* Calculate the aligned address of the last page */
last_page = ((addr + size - 1) / pb_ptr->page_size);
last_page_addr = last_page * pb_ptr->page_size;
/* Calculate number of pages that this read spans. */
num_touched_pages = last_page - first_page + 1;
if ( first_page_addr == last_page_addr ) {
HDassert(1 == num_touched_pages);
last_page_addr = HADDR_UNDEF;
}
/* case 3) raw data read of page size or greater. */
if ( size >= pb_ptr->page_size ) {
#if VFD_IO
if ( H5FD_read(f->shared->lf, type, addr, size, buf) < 0)
#else /* VFD_IO */
if ( H5F__accum_read(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"read through metadata accumulator failed")
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
/* For each page that intersects with the above read, check to see
* if it exists in the page buffer, and if so, if it is dirty.
*
* If it does and is, update the read buffer with the contents
* of the page so we get the up to date data into the buffer
* after the big read from the file.
*/
search_page = first_page;
search_addr = first_page_addr;
for(i = 0; i < num_touched_pages; i++) {
H5PB__SEARCH_INDEX(pb_ptr, search_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( entry_ptr ) {
HDassert( entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC );
HDassert( ! ( entry_ptr->is_metadata ) );
HDassert( entry_ptr->page == search_page );
HDassert( entry_ptr->addr == search_addr );
HDassert( entry_ptr->size == pb_ptr->page_size );
HDassert( entry_ptr->delay_write_until == 0 );
HDassert( entry_ptr->addr <= addr + size );
HDassert( entry_ptr->addr + entry_ptr->size <= addr + size );
if ( entry_ptr->is_dirty ) {
if ( i == 0 ) {
/* handle the possible partial access of the
* first page.
*/
HDassert( search_addr == first_page_addr );
HDassert( search_page == first_page );
offset = addr - first_page_addr;
HDassert((( offset == 0 ) && (search_addr == addr )) ||
(( offset > 0 ) && ( search_addr < addr )));
HDassert(pb_ptr->page_size >= offset);
HDassert( size >= pb_ptr->page_size - (size_t)offset );
HDmemcpy(buf, (uint8_t *)entry_ptr->image_ptr + offset,
pb_ptr->page_size - (size_t)offset);
} else if ( i == num_touched_pages - 1 ) {
/* handle the possible partial access of the
* last page.
*/
HDassert( i > 0 );
HDassert( search_addr == last_page_addr );
HDassert( search_page == last_page );
HDassert( addr < last_page_addr );
HDassert( last_page_addr < addr + size );
offset = (num_touched_pages - 2) * pb_ptr->page_size +
(pb_ptr->page_size - (addr - first_page_addr));
HDmemcpy((uint8_t *)buf + offset, entry_ptr->image_ptr,
(size_t)((addr + size) - last_page_addr));
} else {
/* this is an internal page -- copy it in its
* entireity.
*/
offset = (i - 1) * pb_ptr->page_size +
(pb_ptr->page_size - (addr - first_page_addr));
HDassert ( addr + offset == search_addr );
HDassert ( offset + pb_ptr->page_size <= size );
HDmemcpy(((uint8_t *)(buf) + offset),
entry_ptr->image_ptr,
pb_ptr->page_size);
}
/* we have touched the entry -- move it to the top
* of the LRU if it resides there.
*
* The entry will be on the LRU if both it is not
* a multi-page metadata entry and it is not
* subject to a delayed write.
*
* As this is a raw data page buffer entry, both of
* these must be true, and are asserted above.
*
* Thus, just update the LRU.
*/
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
} /* if ( entry_ptr->is_dirty ) */
} /* if ( entry_ptr ) */
search_page++;
search_addr += pb_ptr->page_size;
} /* end for */
} else {
/* case 4: Raw data read of size less than page size.
*
* In this case, read the desired data from the page buffer, loading
* pages if necessary.
*/
HDassert(size < pb_ptr->page_size);
/* first page */
offset = addr - first_page_addr;
if ( (offset + size) <= pb_ptr->page_size ) {
HDassert(num_touched_pages == 1);
length = size;
} else {
HDassert(num_touched_pages == 2);
length = size - (pb_ptr->page_size - offset);
}
/* get the first page */
H5PB__SEARCH_INDEX(pb_ptr, first_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, first_page_addr,
type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (1)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == first_page_addr);
/* copy data from first page into read buffer */
HDmemcpy((uint8_t *)buf, ((uint8_t *)(entry_ptr->image_ptr) + offset),
length);
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
/* second page, if it exists */
if ( num_touched_pages == 2 ) {
offset = length;
length = size - offset;
HDassert(offset + length == size);
/* get the second page */
H5PB__SEARCH_INDEX(pb_ptr, last_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, last_page_addr,
type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (2)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == last_page_addr);
HDassert(entry_ptr->page == last_page);
/* copy data from second page into read buffer */
HDmemcpy(((uint8_t *)(buf) + offset),
(uint8_t *)(entry_ptr->image_ptr), length);
H5PB__UPDATE_RP_FOR_ACCESS(pb_ptr, entry_ptr, FAIL)
}
} /* end else */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB__read_raw() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__write_meta
*
* Purpose: Satisfy a metadata read in cases 7 and 8 from H5PB_write().
* Specifically:
*
* 7) If the write is of metadata, the write is larger than
* one page, and vfd_swmr_writer is TRUE, the write must
* buffered in the page buffer until the end of the tick.
*
* If it doesn't exist already, create a multi-page metadata
* entry in the page buffer and copy the write into it.
* Insert the new entry in the tick list if necessary.
*
* Test to see if the write of the multi-page metadata
* entry must be delayed. If so, place the entry in
* the delayed write list. Otherwise, the multi-page
* metadata entry will be written to the HDF5 file and
* evicted when the tick list is released at the of the
* tick.
*
* 8) If the write is of metadata, and the write is of size
* less than or equal to the page size, write the data
* into the page buffer, loading and inserting a page
* if necessary.
*
* If, in addition, vfd_swmr_writer is TRUE, we must:
*
* * add the page touched by the write to the tick list
* so that it will be buffered until the end of the
* tick.
*
* * test to see if the write must be delayed, and
* add the page to the delayed write list if so.
*
* Observe that this implies that:
*
* 1) The page buffer is defined.
*
* 2) The page buffer has been configured to accept at least
* one page of metadata.
*
* 3) This is a metadata read.
*
* Note also that if the metadata read is of size
* no larger than page size, it may not cross page
* boundaries.
*
* Further, for reads larger than page size (case 7 only),
* the base address must be page aligned.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__write_meta(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
const void *buf/*out*/)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
H5PB_entry_t *entry_ptr; /* Pointer to page buffer entry */
uint64_t page; /* page offset of addr */
haddr_t page_addr; /* page containg addr */
size_t offset; /* offset of write in page */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->min_rd_pages < pb_ptr->max_pages);
HDassert(H5FD_MEM_DRAW != type);
HDassert(buf);
/* Calculate the aligned address of the first page */
page = (addr / pb_ptr->page_size);
page_addr = page * pb_ptr->page_size;
/* if size > pb_ptr->page_size, addr must be page aligned */
HDassert((size <= pb_ptr->page_size) || (addr == page_addr));
/* case 7) metadata write of size greater than page size. */
if ( size > pb_ptr->page_size ) {
/* The write must be for a multi-page metadata entry, and
* we must be running as a VFD SWMR writer.
*
* This requires the following actions:
*
* 1) If the multi-page metadata entry is not alrady in the
* page buffer, create an entry for it.
*
* 2) Overwrite the image of the entry with the write buffer.
*
* 3) If the entry is not alread on the tick list, add it to
* the tick list.
*
* 4) If the entry is not alread on the delayed write list,
* test to see if it should be, and move it from the
* LRU to the delayed write list and set the delay_write_until
* field appropriately.
*
* This is done via the call to H5PB__mark_entry_dirty()
*/
HDassert(pb_ptr->vfd_swmr_writer);
HDassert(addr == page_addr);
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
TRUE, TRUE)
if ( NULL == entry_ptr ) {
/* the multi-page metadata entry is not currently in the page
* buffer. Create an entry for it, and insert it into the LRU.
*
* Don't bother to try to make space for it, as VFD SWMR
* ignores the limits on page buffer size.
*/
if ( H5PB__create_new_page(pb_ptr, addr, size, type,
FALSE, &entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"can't create new page buffer page")
/* set entry_ptr->loaded to TRUE so as to trigger the
* the delayed write test in H5PB__mark_entry_dirty().
*/
entry_ptr->loaded = TRUE;
}
/* at this point, one way or the other, the multi-page metadata
* entry must be in the page buffer.
*/
HDassert(entry_ptr->is_metadata);
HDassert(entry_ptr->is_mpmde);
HDassert(size == entry_ptr->size);
HDassert(type == entry_ptr->mem_type);
/* overwrite the entry image with the write buffer */
HDmemcpy((uint8_t *)(entry_ptr->image_ptr), buf, size);
/* mark the entry dirty */
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (1)")
/* insert in tick list if not there already */
if ( ! ( entry_ptr->modified_this_tick ) ) {
entry_ptr->modified_this_tick = TRUE;
H5PB__INSERT_IN_TL(pb_ptr, entry_ptr, FAIL)
}
} else {
/* case 8) metadata write of size no larger than page size */
offset = addr - page_addr;
/* write cannot cross page boundaries. */
HDassert((offset + size) <= pb_ptr->page_size);
/* get the containing page */
H5PB__SEARCH_INDEX(pb_ptr, page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
TRUE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, page_addr, type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (1)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == page_addr);
HDassert(entry_ptr->is_metadata);
HDassert(!(entry_ptr->is_mpmde));
HDassert(entry_ptr->size == pb_ptr->page_size);
HDassert(size <= entry_ptr->size);
/* copy data from the write buffer into the page image */
HDmemcpy(((uint8_t *)(entry_ptr->image_ptr) + offset),
(const uint8_t *)buf, size);
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (2)")
if ( pb_ptr->vfd_swmr_writer ) {
/* test to see if the entry is on the tick list, and insert
* it if it is not. This will force the page buffer to retain
* the page until the end of the tick.
*/
if ( ! ( entry_ptr->modified_this_tick ) ) {
entry_ptr->modified_this_tick = TRUE;
H5PB__INSERT_IN_TL(pb_ptr, entry_ptr, FAIL)
}
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB__write_meta() */
/*-------------------------------------------------------------------------
*
* Function: H5PB__write_raw
*
* Purpose: Satisfy a raw data write in cases 3 and 4 from H5PB_write().
* Specifically:
*
* 3) If the write is raw data, and it of page size or
* larger, write directly to the HDF5 file.
*
* It is possible that the write intersects one or more
* pages in the page buffer -- test for this and update
* any partially written pages, and evict any pages
* that are completely overwritten.
*
* Note that no pages are inserted into the page buffer in
* this case.
*
* 4) If the write is of raw data, and it is of size less
* than the page size, write the page into the page
* buffer, loading and inserting pages into the
* page buffer as necessary
*
* Observe that this implies that:
*
* 1) The page buffer is defined.
*
* 2) The page buffer has been configured to accept at least
* one page of raw data.
*
* 2) This is a raw data write.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: John Mainzer -- 10/11/18
*
* Changes: None.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5PB__write_raw(H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size,
const void *buf/*out*/)
{
H5PB_t *pb_ptr; /* Page buffer for this file */
H5PB_entry_t *entry_ptr; /* Pointer to page buffer entry */
uint64_t first_page; /* page offset of first I/O */
uint64_t last_page; /* page offset of last I/O */
uint64_t search_page; /* page offset of current page */
haddr_t first_page_addr; /* address of first page of I/O */
haddr_t last_page_addr; /* address of last page of I/O */
haddr_t search_addr; /* Address of current page */
hsize_t num_touched_pages; /* Number of pages accessed */
hsize_t i; /* Local index variable */
size_t length; /* length of write in a page */
size_t offset; /* offset of write in a page */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
HDassert(f);
HDassert(f->shared);
HDassert(f->shared->pb_ptr);
pb_ptr = f->shared->pb_ptr;
HDassert(pb_ptr->magic == H5PB__H5PB_T_MAGIC);
HDassert(pb_ptr->min_md_pages < pb_ptr->max_pages);
HDassert(f->shared->lf);
HDassert(H5FD_MEM_DRAW == type);
/* Calculate the aligned address of the first page */
first_page = (addr / pb_ptr->page_size);
first_page_addr = first_page * pb_ptr->page_size;
/* Calculate the aligned address of the last page */
last_page = ((addr + size - 1) / pb_ptr->page_size);
last_page_addr = last_page * pb_ptr->page_size;
/* Calculate number of pages that this read spans. */
num_touched_pages = last_page - first_page + 1;
if ( first_page_addr == last_page_addr ) {
HDassert(1 == num_touched_pages);
last_page_addr = HADDR_UNDEF;
}
/* case 3) raw data write of page size or greater. */
if ( size >= pb_ptr->page_size ) {
#if VFD_IO
if ( H5FD_write(f->shared->lf, type, addr, size, buf) < 0 )
#else /* VFD_IO */
if ( H5F__accum_write(f, type, addr, size, buf) < 0 )
#endif /* VFD_IO */
HGOTO_ERROR(H5E_PAGEBUF, H5E_WRITEERROR, FAIL, \
"write through metadata accumulator failed")
H5PB__UPDATE_STATS_FOR_BYPASS(pb_ptr, type, size);
/* For each page that intersects with the above write, check to see
* if it exists in the page buffer.
*
* If it does and is, and if the write overwrites page fully,
* mark the page clean and evict it.
*
* If the write only partially intersects a page, update the
* page and mark it dirty.
*/
search_page = first_page;
search_addr = first_page_addr;
for(i = 0; i < num_touched_pages; i++) {
H5PB__SEARCH_INDEX(pb_ptr, search_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( entry_ptr ) {
HDassert( entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC );
HDassert( ! ( entry_ptr->is_metadata ) );
HDassert( entry_ptr->page == search_page );
HDassert( entry_ptr->addr == search_addr );
HDassert( entry_ptr->size == pb_ptr->page_size );
HDassert( entry_ptr->delay_write_until == 0 );
HDassert( entry_ptr->addr <= addr + size );
if ( ( addr <= entry_ptr->addr ) &&
( entry_ptr->addr + entry_ptr->size <= addr + size ) ) {
/* the page is completely overwritten -- mark it clean
* and evict it.
*/
if ( ( entry_ptr->is_dirty ) &&
( H5PB__mark_entry_clean(pb_ptr, entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry clean failed")
if ( H5PB__evict_entry(pb_ptr, entry_ptr, TRUE) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"forced eviction failed (1)")
} else if ( i == 0 ) {
/* handle partial overwrite of the first page. */
HDassert( search_addr == first_page_addr );
HDassert( search_page == first_page );
HDassert( search_addr < addr );
HDassert( entry_ptr->addr + entry_ptr->size <=
addr + size );
offset = addr - first_page_addr;
HDassert( offset > 0 );
HDassert( pb_ptr->page_size >= offset );
HDassert( size >= pb_ptr->page_size - (size_t)offset );
HDmemcpy((uint8_t *)entry_ptr->image_ptr + offset, buf,
pb_ptr->page_size - (size_t)offset);
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (1)")
} else if ( i == num_touched_pages - 1 ) {
/* handle partial overwrite of the last page. */
HDassert( i > 0 );
HDassert( search_addr == last_page_addr );
HDassert( search_page == last_page );
HDassert( addr < last_page_addr );
HDassert( last_page_addr < addr + size );
offset = (num_touched_pages - 2) * pb_ptr->page_size +
(pb_ptr->page_size - (addr - first_page_addr));
HDmemcpy(entry_ptr->image_ptr,
(const uint8_t *)buf + offset,
(size_t)((addr + size) - last_page_addr));
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (2)")
} else {
/* this should be un-reachable */
HDassert(FALSE);
}
} /* if ( entry_ptr ) */
search_page++;
search_addr += pb_ptr->page_size;
} /* end for */
} else {
/* case 4: Raw data write of size less than page size.
*
* In this case, write the data to the page buffer, loading
* pages if necessary.
*/
HDassert(size < pb_ptr->page_size);
/* first page */
offset = addr - first_page_addr;
if ( (offset + size) <= pb_ptr->page_size ) {
HDassert(num_touched_pages == 1);
length = size;
} else {
HDassert(num_touched_pages == 2);
length = pb_ptr->page_size - offset;
HDassert( offset + length == pb_ptr->page_size );
}
/* get the first page */
H5PB__SEARCH_INDEX(pb_ptr, first_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, first_page_addr,
type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (1)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == first_page_addr);
/* copy data from the write buffer into the first page */
HDmemcpy(((uint8_t *)(entry_ptr->image_ptr)) + offset,
(const uint8_t *)buf, length);
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (3)")
/* second page, if it exists */
if ( num_touched_pages == 2 ) {
offset = length;
length = size - offset;
HDassert(offset + length == size);
/* get the first page */
H5PB__SEARCH_INDEX(pb_ptr, last_page, entry_ptr, FAIL)
/* update hit rate stats */
H5PB__UPDATE_PB_HIT_RATE_STATS(pb_ptr, (entry_ptr != NULL), \
FALSE, FALSE)
if ( ( NULL == entry_ptr ) &&
( H5PB__load_page(f, pb_ptr, last_page_addr,
type, &entry_ptr) < 0 ) )
HGOTO_ERROR(H5E_PAGEBUF, H5E_READERROR, FAIL, \
"page buffer page load request failed (2)")
HDassert(entry_ptr);
HDassert(entry_ptr->magic == H5PB__H5PB_ENTRY_T_MAGIC);
HDassert(entry_ptr->addr == last_page_addr);
HDassert(entry_ptr->page == last_page);
/* copy data from the write buffer into the first page */
HDmemcpy((uint8_t *)(entry_ptr->image_ptr),
((const uint8_t *)(buf) + offset), length);
if ( H5PB__mark_entry_dirty(f, pb_ptr, entry_ptr) < 0 )
HGOTO_ERROR(H5E_PAGEBUF, H5E_SYSTEM, FAIL, \
"mark entry dirty failed (3)")
}
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5PB__write_raw() */
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