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|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: rky 980813
*
* Purpose: Functions to read/write directly between app buffer and file.
*
* Beware of the ifdef'ed print statements.
* I didn't make them portable.
*/
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5S_PACKAGE /*suppress error about including H5Spkg */
#include "H5private.h" /* Internal types, etc. */
#include "H5Eprivate.h" /* Error reporting */
#include "H5Fpkg.h" /* Ugly, but necessary for the MPIO I/O accesses */
#include "H5FDmpio.h" /* MPIO file driver */
#include "H5FDprivate.h" /* Necessary for the H5FD_write & H5FD_read prototypes.. */
#include "H5Iprivate.h" /* Object IDs */
#include "H5Pprivate.h" /* Property Lists */
#include "H5Spkg.h" /* Dataspaces */
#ifndef H5_HAVE_PARALLEL
/*
* The H5S_mpio_xxxx functions are for parallel I/O only and are
* valid only when H5_HAVE_PARALLEL is #defined. This empty #ifndef
* body is used to allow this source file be included in the serial
* distribution.
* Some compilers/linkers may complain about "empty" object file.
* If that happens, uncomment the following statement to pacify
* them.
*/
/* const hbool_t H5S_mpio_avail = FALSE; */
#else /* H5_HAVE_PARALLEL */
/* Interface initialization */
#define PABLO_MASK H5Sall_mask
#define INTERFACE_INIT NULL
static int interface_initialize_g = 0;
static herr_t
H5S_mpio_all_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_none_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_space_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_spaces_xfer(H5F_t *f, const H5O_layout_t *layout, size_t elmt_size,
const H5S_t *file_space, const H5S_t *mem_space,
hid_t dxpl_id, void *buf/*out*/, hbool_t do_write);
/*-------------------------------------------------------------------------
* Function: H5S_mpio_all_type
*
* Purpose: Translate an HDF5 "all" selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications:
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_all_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
hsize_t total_bytes;
unsigned u;
FUNC_ENTER_NOINIT(H5S_mpio_all_type);
/* Check args */
assert (space);
/* Just treat the entire extent as a block of bytes */
total_bytes = (hsize_t)elmt_size;
for (u=0; u<space->extent.u.simple.rank; ++u)
total_bytes *= space->extent.u.simple.size[u];
/* fill in the return values */
*new_type = MPI_BYTE;
H5_ASSIGN_OVERFLOW(*count, total_bytes, hsize_t, size_t);
*extra_offset = 0;
*is_derived_type = 0;
FUNC_LEAVE_NOAPI(SUCCEED);
} /* H5S_mpio_all_type() */
/*-------------------------------------------------------------------------
* Function: H5S_mpio_none_type
*
* Purpose: Translate an HDF5 "none" selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: Quincey Koziol, October 29, 2002
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_none_type( const H5S_t UNUSED *space, size_t UNUSED elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
FUNC_ENTER_NOINIT(H5S_mpio_none_type);
/* fill in the return values */
*new_type = MPI_BYTE;
*count = 0;
*extra_offset = 0;
*is_derived_type = 0;
FUNC_LEAVE_NOAPI(SUCCEED);
} /* H5S_mpio_none_type() */
/*-------------------------------------------------------------------------
* Function: H5S_mpio_hyper_type
*
* Purpose: Translate an HDF5 hyperslab selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications: ppw 990401
* rky, ppw 2000-09-26 Freed old type after creating struct type.
* rky 2000-10-05 Changed displacements to be MPI_Aint.
* rky 2000-10-06 Added code for cases of empty hyperslab.
* akc, rky 2000-11-16 Replaced hard coded dimension size with
* H5S_MAX_RANK.
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter. Also accomodate
* selection offset in MPI type built.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
H5S_sel_iter_t sel_iter; /* Selection iteration info */
hbool_t sel_iter_init=0; /* Selection iteration info has been initialized */
struct dim { /* less hassle than malloc/free & ilk */
hssize_t start;
hsize_t strid;
hsize_t block;
hsize_t xtent;
hsize_t count;
} d[H5S_MAX_RANK];
int i;
int offset[H5S_MAX_RANK];
int max_xtent[H5S_MAX_RANK];
H5S_hyper_dim_t *diminfo; /* [rank] */
int rank;
int block_length[2];
MPI_Datatype inner_type, outer_type, old_type[2];
MPI_Aint extent_len, displacement[2];
int mpi_code; /* MPI return code */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOINIT(H5S_mpio_hyper_type);
/* Check args */
assert (space);
assert(sizeof(MPI_Aint) >= sizeof(elmt_size));
if (0==elmt_size)
goto empty;
/* Initialize selection iterator */
if (H5S_select_iter_init(&sel_iter, space, elmt_size)<0)
HGOTO_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator");
sel_iter_init=1; /* Selection iteration info has been initialized */
/* Abbreviate args */
diminfo=sel_iter.u.hyp.diminfo;
assert (diminfo);
/* make a local copy of the dimension info so we can operate with them */
/* Check if this is a "flattened" regular hyperslab selection */
if(sel_iter.u.hyp.iter_rank!=0 && sel_iter.u.hyp.iter_rank<space->extent.u.simple.rank) {
/* Flattened selection */
rank=sel_iter.u.hyp.iter_rank;
assert (rank >= 0 && rank<=H5S_MAX_RANK); /* within array bounds */
if (0==rank)
goto empty;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Flattened selection\n",FUNC);
#endif
for ( i=0; i<rank; ++i) {
d[i].start = diminfo[i].start+sel_iter.u.hyp.sel_off[i];
d[i].strid = diminfo[i].stride;
d[i].block = diminfo[i].block;
d[i].count = diminfo[i].count;
d[i].xtent = sel_iter.u.hyp.size[i];
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
if (i==0)
HDfprintf(stderr, " rank=%d\n", rank );
else
HDfprintf(stderr, "\n" );
#endif
if (0==d[i].block)
goto empty;
if (0==d[i].count)
goto empty;
if (0==d[i].xtent)
goto empty;
}
} /* end if */
else {
/* Non-flattened selection */
rank = space->extent.u.simple.rank;
assert (rank >= 0 && rank<=H5S_MAX_RANK); /* within array bounds */
if (0==rank)
goto empty;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Non-flattened selection\n",FUNC);
#endif
for ( i=0; i<rank; ++i) {
d[i].start = diminfo[i].start+space->select.offset[i];
d[i].strid = diminfo[i].stride;
d[i].block = diminfo[i].block;
d[i].count = diminfo[i].count;
d[i].xtent = space->extent.u.simple.size[i];
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
if (i==0)
HDfprintf(stderr, " rank=%d\n", rank );
else
HDfprintf(stderr, "\n" );
#endif
if (0==d[i].block)
goto empty;
if (0==d[i].count)
goto empty;
if (0==d[i].xtent)
goto empty;
}
} /* end else */
/**********************************************************************
Compute array "offset[rank]" which gives the offsets for a multi-
dimensional array with dimensions "d[i].xtent" (i=0,1,...,rank-1).
**********************************************************************/
offset[rank-1] = 1;
max_xtent[rank-1] = d[rank-1].xtent;
#ifdef H5Smpi_DEBUG
i=rank-1;
HDfprintf(stderr, " offset[%2d]=%d; max_xtent[%2d]=%d\n",
i, offset[i], i, max_xtent[i]);
#endif
for (i=rank-2; i>=0; --i) {
offset[i] = offset[i+1]*d[i+1].xtent;
max_xtent[i] = max_xtent[i+1]*d[i].xtent;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, " offset[%2d]=%d; max_xtent[%2d]=%d\n",
i, offset[i], i, max_xtent[i]);
#endif
}
/* Create a type covering the selected hyperslab.
* Multidimensional dataspaces are stored in row-major order.
* The type is built from the inside out, going from the
* fastest-changing (i.e., inner) dimension * to the slowest (outer). */
/*******************************************************
* Construct contig type for inner contig dims:
*******************************************************/
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Making contig type %d MPI_BYTEs\n", FUNC, elmt_size );
for (i=rank-1; i>=0; --i)
HDfprintf(stderr, "d[%d].xtent=%Hu \n", i, d[i].xtent);
#endif
if (MPI_SUCCESS != (mpi_code= MPI_Type_contiguous( (int)elmt_size, MPI_BYTE, &inner_type )))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code);
/*******************************************************
* Construct the type by walking the hyperslab dims
* from the inside out:
*******************************************************/
for ( i=rank-1; i>=0; --i) {
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Dimension i=%d \n"
"count=%Hu block=%Hu stride=%Hu\n",
FUNC, i, d[i].count, d[i].block, d[i].strid );
#endif
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: i=%d Making vector-type \n", FUNC, i);
#endif
/****************************************
* Build vector in current dimension:
****************************************/
mpi_code =MPI_Type_vector((int)(d[i].count), /* count */
(int)(d[i].block), /* blocklength */
(int)(d[i].strid), /* stride */
inner_type, /* old type */
&outer_type ); /* new type */
MPI_Type_free( &inner_type );
if (mpi_code!=MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code);
displacement[1] = (MPI_Aint)elmt_size * max_xtent[i];
if(MPI_SUCCESS != (mpi_code = MPI_Type_extent(outer_type, &extent_len)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_extent failed", mpi_code);
/*************************************************
* Restructure this datatype ("outer_type")
* so that it still starts at 0, but its extent
* is the full extent in this dimension.
*************************************************/
if ((int)extent_len < displacement[1]) {
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: i=%d Extending struct type\n"
"***displacements: 0, %d\n", FUNC, i, displacement[1]);
#endif
#ifdef H5_HAVE_MPI2 /* have MPI-2 (this function is not included in MPICH) */
mpi_code = MPI_Type_create_resized
( outer_type, /* old type */
0, /* blocklengths */
displacement[1], /* displacements */
&inner_type); /* new type */
#else /* do not have MPI-2 */
block_length[0] = 1;
block_length[1] = 1;
displacement[0] = 0;
old_type[0] = outer_type;
old_type[1] = MPI_UB;
mpi_code = MPI_Type_struct ( 2, /* count */
block_length, /* blocklengths */
displacement, /* displacements */
old_type, /* old types */
&inner_type); /* new type */
#endif
MPI_Type_free (&outer_type);
if (mpi_code!=MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "couldn't resize MPI vector type", mpi_code);
}
else {
inner_type = outer_type;
}
} /* end for */
/***************************
* End of loop, walking
* thru dimensions.
***************************/
/* At this point inner_type is actually the outermost type, even for 0-trip loop */
/***************************************************************
* Final task: create a struct which is a "clone" of the
* current struct, but displaced according to the d[i].start
* values given in the hyperslab description:
***************************************************************/
displacement[0] = 0;
for (i=rank-1; i>=0; i--)
displacement[0] += d[i].start * offset[i];
if (displacement[0] > 0) {
displacement[0] *= elmt_size;
block_length[0] = 1;
old_type[0] = inner_type;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Making final struct\n***count=1:\n", FUNC);
HDfprintf(stderr, "\tblocklength[0]=%d; displacement[0]=%d\n",
block_length[0], displacement[0]);
#endif
if (MPI_SUCCESS != (mpi_code= MPI_Type_struct( 1, /* count */
block_length, /* blocklengths */
displacement, /* displacements */
old_type, /* old type */
new_type )) /* new type */
)
HMPI_GOTO_ERROR(FAIL, "couldn't create MPI struct type", mpi_code);
if (MPI_SUCCESS != (mpi_code= MPI_Type_free (&old_type[0])))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_free failed", mpi_code);
}
else {
*new_type = inner_type;
}
if (MPI_SUCCESS != (mpi_code= MPI_Type_commit( new_type )))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code);
/* fill in the remaining return values */
*count = 1; /* only have to move one of these suckers! */
*extra_offset = 0;
*is_derived_type = 1;
HGOTO_DONE(SUCCEED);
empty:
/* special case: empty hyperslab */
*new_type = MPI_BYTE;
*count = 0;
*extra_offset = 0;
*is_derived_type = 0;
done:
/* Release selection iterator */
if(sel_iter_init) {
if (H5S_select_iter_release(&sel_iter)<0)
HDONE_ERROR (H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator");
} /* end if */
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "Leave %s, count=%Hu is_derived_type=%d\n",
FUNC, *count, *is_derived_type );
#endif
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_space_type
*
* Purpose: Translate an HDF5 dataspace selection into an MPI type.
* Currently handle only hyperslab and "all" selections.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications:
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_space_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOINIT(H5S_mpio_space_type);
/* Check args */
assert (space);
/* Creat MPI type based on the kind of selection */
switch (space->extent.type) {
case H5S_SCALAR:
case H5S_SIMPLE:
switch(space->select.type) {
case H5S_SEL_NONE:
if ( H5S_mpio_none_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_ALL:
if ( H5S_mpio_all_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_POINTS:
/* not yet implemented */
ret_value = FAIL;
break;
case H5S_SEL_HYPERSLABS:
if(H5S_mpio_hyper_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
default:
assert("unknown selection type" && 0);
break;
} /* end switch */
break;
case H5S_COMPLEX:
/* not yet implemented */
HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "complex data spaces are not supported yet");
break;
default:
assert("unknown data space type" && 0);
break;
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_spaces_xfer
*
* Purpose: Use MPI-IO to transfer data efficiently
* directly between app buffer and file.
*
* Return: non-negative on success, negative on failure.
*
* Programmer: rky 980813
*
* Notes:
* For collective data transfer only since this would eventually call
* H5FD_mpio_setup to do setup to eveually call MPI_File_set_view in
* H5FD_mpio_read or H5FD_mpio_write. MPI_File_set_view is a collective
* call. Letting independent data transfer use this route would result in
* hanging.
*
* The preconditions for calling this routine are located in the
* H5S_mpio_opt_possible() routine, which determines whether this routine
* can be called for a given dataset transfer.
*
* Modifications:
* rky 980918
* Added must_convert parameter to let caller know we can't optimize
* the xfer.
*
* Albert Cheng, 001123
* Include the MPI_type freeing as part of cleanup code.
*
* QAK - 2002/04/02
* Removed the must_convert parameter and move preconditions to
* H5S_mpio_opt_possible() routine
*
* QAK - 2002/06/17
* Removed 'disp' parameter from H5FD_mpio_setup routine and use the
* address of the dataset in MPI_File_set_view() calls, as necessary.
*
* QAK - 2002/06/18
* Removed 'dc_plist' parameter, since it was not used. Also, switch to
* getting the 'extra_offset' setting for each selection.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_spaces_xfer(H5F_t *f, const H5O_layout_t *layout, size_t elmt_size,
const H5S_t *file_space, const H5S_t *mem_space,
hid_t dxpl_id, void *_buf /*out*/,
hbool_t do_write )
{
haddr_t addr; /* Address of dataset (or selection) within file */
size_t mpi_buf_count, mpi_file_count; /* Number of "objects" to transfer */
hsize_t mpi_buf_offset, mpi_file_offset; /* Offset within dataset where selection (ie. MPI type) begins */
MPI_Datatype mpi_buf_type, mpi_file_type; /* MPI types for buffer (memory) and file */
hbool_t mbt_is_derived=0, /* Whether the buffer (memory) type is derived and needs to be free'd */
mft_is_derived=0; /* Whether the file type is derived and needs to be free'd */
hbool_t plist_is_setup=0; /* Whether the dxpl has been customized */
uint8_t *buf=(uint8_t *)_buf; /* Alias for pointer arithmetic */
int mpi_code; /* MPI return code */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOINIT(H5S_mpio_spaces_xfer);
/* Check args */
assert (f);
assert (layout);
assert (file_space);
assert (mem_space);
assert (buf);
assert (IS_H5FD_MPIO(f));
/* Make certain we have the correct type of property list */
assert(TRUE==H5P_isa_class(dxpl_id,H5P_DATASET_XFER));
/* create the MPI buffer type */
if (H5S_mpio_space_type( mem_space, elmt_size,
/* out: */
&mpi_buf_type,
&mpi_buf_count,
&mpi_buf_offset,
&mbt_is_derived )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't create MPI buf type");
/* create the MPI file type */
if ( H5S_mpio_space_type( file_space, elmt_size,
/* out: */
&mpi_file_type,
&mpi_file_count,
&mpi_file_offset,
&mft_is_derived )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't create MPI file type");
/* Use the absolute base address of the dataset (or chunk, eventually) as
* the address to read from. This should be used as the diplacement for
* a call to MPI_File_set_view() in the read or write call.
*/
addr = f->shared->base_addr + layout->addr + mpi_file_offset;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "spaces_xfer: addr=%a\n", addr );
#endif
/*
* Pass buf type, file type to the file driver. Request an MPI type
* transfer (instead of an elementary byteblock transfer).
*/
if(H5FD_mpio_setup(dxpl_id, mpi_buf_type, mpi_file_type)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't set MPI-I/O properties");
plist_is_setup=1;
/* Adjust the buffer pointer to the beginning of the selection */
buf+=mpi_buf_offset;
/* transfer the data */
if (do_write) {
if (H5FD_write(f->shared->lf, H5FD_MEM_DRAW, dxpl_id, addr, mpi_buf_count, buf) <0)
HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL,"MPI write failed");
} else {
if ( H5FD_read (f->shared->lf, H5FD_MEM_DRAW, dxpl_id, addr, mpi_buf_count, buf) <0)
HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL,"MPI read failed");
}
done:
/* Reset the dxpl settings */
if(plist_is_setup) {
if(H5FD_mpio_teardown(dxpl_id)<0)
HDONE_ERROR(H5E_DATASPACE, H5E_CANTFREE, FAIL, "unable to reset dxpl values");
} /* end if */
/* free the MPI buf and file types */
if (mbt_is_derived) {
if (MPI_SUCCESS != (mpi_code= MPI_Type_free( &mpi_buf_type )))
HMPI_DONE_ERROR(FAIL, "MPI_Type_free failed", mpi_code);
}
if (mft_is_derived) {
if (MPI_SUCCESS != (mpi_code= MPI_Type_free( &mpi_file_type )))
HMPI_DONE_ERROR(FAIL, "MPI_Type_free failed", mpi_code);
}
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_spaces_read
*
* Purpose: MPI-IO function to read directly from app buffer to file.
*
* Return: non-negative on success, negative on failure.
*
* Programmer: rky 980813
*
* Modifications:
*
* rky 980918
* Added must_convert parameter to let caller know we can't optimize the xfer.
*
* QAK - 2002/04/02
* Removed the must_convert parameter and move preconditions to
* H5S_mpio_opt_possible() routine
*
*-------------------------------------------------------------------------
*/
herr_t
H5S_mpio_spaces_read(H5F_t *f, const H5O_layout_t *layout,
H5P_genplist_t UNUSED *dc_plist, const H5D_storage_t UNUSED *store, size_t elmt_size,
const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
void *buf/*out*/)
{
herr_t ret_value;
FUNC_ENTER_NOAPI(H5S_mpio_spaces_read, FAIL);
ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size,
file_space, mem_space, dxpl_id,
buf, 0/*read*/);
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_spaces_write
*
* Purpose: MPI-IO function to write directly from app buffer to file.
*
* Return: non-negative on success, negative on failure.
*
* Programmer: rky 980813
*
* Modifications:
*
* rky 980918
* Added must_convert parameter to let caller know we can't optimize the xfer.
*
* QAK - 2002/04/02
* Removed the must_convert parameter and move preconditions to
* H5S_mpio_opt_possible() routine
*
*-------------------------------------------------------------------------
*/
herr_t
H5S_mpio_spaces_write(H5F_t *f, H5O_layout_t *layout,
H5P_genplist_t UNUSED *dc_plist, const H5D_storage_t UNUSED *store, size_t elmt_size,
const H5S_t *file_space, const H5S_t *mem_space, hid_t dxpl_id,
const void *buf)
{
herr_t ret_value;
FUNC_ENTER_NOAPI(H5S_mpio_spaces_write, FAIL);
/*OKAY: CAST DISCARDS CONST QUALIFIER*/
ret_value = H5S_mpio_spaces_xfer(f, layout, elmt_size,
file_space, mem_space, dxpl_id,
(void*)buf, 1/*write*/);
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_opt_possible
*
* Purpose: Checks if an direct I/O transfer is possible between memory and
* the file.
*
* Return: Success: Non-negative: TRUE or FALSE
* Failure: Negative
*
* Programmer: Quincey Koziol
* Wednesday, April 3, 2002
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
htri_t
H5S_mpio_opt_possible( const H5S_t *mem_space, const H5S_t *file_space, const unsigned flags)
{
htri_t c1,c2; /* Flags whether a selection is optimizable */
htri_t ret_value=TRUE;
FUNC_ENTER_NOAPI(H5S_mpio_opt_possible, FAIL);
/* Check args */
assert(mem_space);
assert(file_space);
/* Check whether these are both simple or scalar dataspaces */
if (!((H5S_SIMPLE==mem_space->extent.type || H5S_SCALAR==mem_space->extent.type)
&& (H5S_SIMPLE==file_space->extent.type || H5S_SCALAR==file_space->extent.type)))
HGOTO_DONE(FALSE);
/* Check whether both selections are "regular" */
c1=(*file_space->select.is_regular)(file_space);
c2=(*mem_space->select.is_regular)(mem_space);
if(c1==FAIL || c2==FAIL)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "invalid check for single selection blocks");
if(c1==FALSE || c2==FALSE)
HGOTO_DONE(FALSE);
/* Can't currently handle point selections */
if (H5S_SEL_POINTS==mem_space->select.type || H5S_SEL_POINTS==file_space->select.type)
HGOTO_DONE(FALSE);
/* Dataset storage must be contiguous currently */
if ((flags&H5S_CONV_STORAGE_MASK)!=H5S_CONV_STORAGE_CONTIGUOUS)
HGOTO_DONE(FALSE);
/* Parallel I/O conversion flag must be set */
if(!(flags&H5S_CONV_PAR_IO_POSSIBLE))
HGOTO_DONE(FALSE);
done:
FUNC_LEAVE_NOAPI(ret_value);
} /* H5S_mpio_opt_possible() */
#endif /* H5_HAVE_PARALLEL */
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