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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: rky 980813
*
* Purpose: Functions to read/write directly between app buffer and file.
*
* Beware of the ifdef'ed print statements.
* I didn't make them portable.
*/
#define H5S_PACKAGE /*suppress error about including H5Spkg */
/* Pablo information */
/* (Put before include files to avoid problems with inline functions) */
#define PABLO_MASK H5S_mpio_mask
#include "H5private.h" /* Generic Functions */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fprivate.h" /* File access */
#include "H5FDprivate.h" /* File drivers */
#include "H5Iprivate.h" /* IDs */
#include "H5Oprivate.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
#include "H5Spkg.h" /* Dataspaces */
#ifdef H5_HAVE_PARALLEL
static herr_t
H5S_mpio_all_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_none_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t
H5S_mpio_span_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type );
static herr_t obtain_datatype(const hsize_t size[],
H5S_hyper_span_t* span,MPI_Datatype *span_type,
size_t elmt_size,int dimindex);
/*-------------------------------------------------------------------------
* Function: H5S_mpio_all_type
*
* Purpose: Translate an HDF5 "all" selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications:
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_all_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
hsize_t total_bytes;
hssize_t snelmts; /*total number of elmts (signed) */
hsize_t nelmts; /*total number of elmts */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5S_mpio_all_type);
/* Check args */
assert (space);
/* Just treat the entire extent as a block of bytes */
if((snelmts = H5S_GET_EXTENT_NPOINTS(space))<0)
HGOTO_ERROR (H5E_ARGS, H5E_BADVALUE, FAIL, "src dataspace has invalid selection")
H5_ASSIGN_OVERFLOW(nelmts,snelmts,hssize_t,hsize_t);
total_bytes = (hsize_t)elmt_size*nelmts;
/* fill in the return values */
*new_type = MPI_BYTE;
H5_ASSIGN_OVERFLOW(*count, total_bytes, hsize_t, size_t);
*extra_offset = 0;
*is_derived_type = 0;
done:
FUNC_LEAVE_NOAPI(ret_value);
} /* H5S_mpio_all_type() */
/*-------------------------------------------------------------------------
* Function: H5S_mpio_none_type
*
* Purpose: Translate an HDF5 "none" selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: Quincey Koziol, October 29, 2002
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_none_type( const H5S_t UNUSED *space, size_t UNUSED elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5S_mpio_none_type);
/* fill in the return values */
*new_type = MPI_BYTE;
*count = 0;
*extra_offset = 0;
*is_derived_type = 0;
FUNC_LEAVE_NOAPI(SUCCEED);
} /* H5S_mpio_none_type() */
/*-------------------------------------------------------------------------
* Function: H5S_mpio_hyper_type
*
* Purpose: Translate an HDF5 hyperslab selection into an MPI type.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications: ppw 990401
* rky, ppw 2000-09-26 Freed old type after creating struct type.
* rky 2000-10-05 Changed displacements to be MPI_Aint.
* rky 2000-10-06 Added code for cases of empty hyperslab.
* akc, rky 2000-11-16 Replaced hard coded dimension size with
* H5S_MAX_RANK.
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter. Also accomodate selection
* offset in MPI type built.
*
* Albert Cheng, August 4, 2004
* Reimplemented the algorithm of forming the outer_type by
* defining it as (start, vector, extent) in one call.
*
*-------------------------------------------------------------------------
*/
static herr_t
H5S_mpio_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
H5S_sel_iter_t sel_iter; /* Selection iteration info */
hbool_t sel_iter_init=0; /* Selection iteration info has been initialized */
struct dim { /* less hassle than malloc/free & ilk */
hssize_t start;
hsize_t strid;
hsize_t block;
hsize_t xtent;
hsize_t count;
} d[H5S_MAX_RANK];
int i;
int offset[H5S_MAX_RANK];
int max_xtent[H5S_MAX_RANK];
H5S_hyper_dim_t *diminfo; /* [rank] */
int rank;
int block_length[3];
MPI_Datatype inner_type, outer_type, old_types[3];
MPI_Aint extent_len, displacement[3];
int mpi_code; /* MPI return code */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5S_mpio_hyper_type);
/* Check args */
assert (space);
assert(sizeof(MPI_Aint) >= sizeof(elmt_size));
if (0==elmt_size)
goto empty;
/* Initialize selection iterator */
if (H5S_select_iter_init(&sel_iter, space, elmt_size)<0)
HGOTO_ERROR (H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to initialize selection iterator");
sel_iter_init=1; /* Selection iteration info has been initialized */
/* Abbreviate args */
diminfo=sel_iter.u.hyp.diminfo;
assert (diminfo);
/* make a local copy of the dimension info so we can operate with them */
/* Check if this is a "flattened" regular hyperslab selection */
if(sel_iter.u.hyp.iter_rank!=0 && sel_iter.u.hyp.iter_rank<space->extent.rank) {
/* Flattened selection */
rank=sel_iter.u.hyp.iter_rank;
assert (rank >= 0 && rank<=H5S_MAX_RANK); /* within array bounds */
if (0==rank)
goto empty;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Flattened selection\n",FUNC);
#endif
for ( i=0; i<rank; ++i) {
d[i].start = diminfo[i].start+sel_iter.u.hyp.sel_off[i];
d[i].strid = diminfo[i].stride;
d[i].block = diminfo[i].block;
d[i].count = diminfo[i].count;
d[i].xtent = sel_iter.u.hyp.size[i];
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
if (i==0)
HDfprintf(stderr, " rank=%d\n", rank );
else
HDfprintf(stderr, "\n" );
#endif
if (0==d[i].block)
goto empty;
if (0==d[i].count)
goto empty;
if (0==d[i].xtent)
goto empty;
}
} /* end if */
else {
/* Non-flattened selection */
rank = space->extent.rank;
assert (rank >= 0 && rank<=H5S_MAX_RANK); /* within array bounds */
if (0==rank)
goto empty;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Non-flattened selection\n",FUNC);
#endif
for ( i=0; i<rank; ++i) {
d[i].start = diminfo[i].start+space->select.offset[i];
d[i].strid = diminfo[i].stride;
d[i].block = diminfo[i].block;
d[i].count = diminfo[i].count;
d[i].xtent = space->extent.size[i];
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: start=%Hd stride=%Hu count=%Hu block=%Hu xtent=%Hu",
FUNC, d[i].start, d[i].strid, d[i].count, d[i].block, d[i].xtent );
if (i==0)
HDfprintf(stderr, " rank=%d\n", rank );
else
HDfprintf(stderr, "\n" );
#endif
if (0==d[i].block)
goto empty;
if (0==d[i].count)
goto empty;
if (0==d[i].xtent)
goto empty;
}
} /* end else */
/**********************************************************************
Compute array "offset[rank]" which gives the offsets for a multi-
dimensional array with dimensions "d[i].xtent" (i=0,1,...,rank-1).
**********************************************************************/
offset[rank-1] = 1;
max_xtent[rank-1] = d[rank-1].xtent;
#ifdef H5Smpi_DEBUG
i=rank-1;
HDfprintf(stderr, " offset[%2d]=%d; max_xtent[%2d]=%d\n",
i, offset[i], i, max_xtent[i]);
#endif
for (i=rank-2; i>=0; --i) {
offset[i] = offset[i+1]*d[i+1].xtent;
max_xtent[i] = max_xtent[i+1]*d[i].xtent;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, " offset[%2d]=%d; max_xtent[%2d]=%d\n",
i, offset[i], i, max_xtent[i]);
#endif
}
/* Create a type covering the selected hyperslab.
* Multidimensional dataspaces are stored in row-major order.
* The type is built from the inside out, going from the
* fastest-changing (i.e., inner) dimension * to the slowest (outer). */
/*******************************************************
* Construct contig type for inner contig dims:
*******************************************************/
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Making contig type %d MPI_BYTEs\n", FUNC,elmt_size );
for (i=rank-1; i>=0; --i)
HDfprintf(stderr, "d[%d].xtent=%Hu \n", i, d[i].xtent);
#endif
if (MPI_SUCCESS != (mpi_code= MPI_Type_contiguous( (int)elmt_size, MPI_BYTE, &inner_type )))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_contiguous failed", mpi_code);
/*******************************************************
* Construct the type by walking the hyperslab dims
* from the inside out:
*******************************************************/
for ( i=rank-1; i>=0; --i) {
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: Dimension i=%d \n"
"start=%Hd count=%Hu block=%Hu stride=%Hu, xtent=%Hu max_xtent=%d\n",
FUNC, i, d[i].start, d[i].count, d[i].block, d[i].strid, d[i].xtent, max_xtent[i]);
#endif
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: i=%d Making vector-type \n", FUNC,i);
#endif
/****************************************
* Build vector type of the selection.
****************************************/
mpi_code =MPI_Type_vector((int)(d[i].count), /* count */
(int)(d[i].block), /* blocklength */
(int)(d[i].strid), /* stride */
inner_type, /* old type */
&outer_type); /* new type */
MPI_Type_free( &inner_type );
if (mpi_code!=MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "couldn't create MPI vector type", mpi_code);
/****************************************
* Then build the dimension type as (start, vector type, xtent).
****************************************/
/* calculate start and extent values of this dimension */
displacement[1] = d[i].start * offset[i] * elmt_size;
displacement[2] = (MPI_Aint)elmt_size * max_xtent[i];
if(MPI_SUCCESS != (mpi_code = MPI_Type_extent(outer_type, &extent_len)))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_extent failed", mpi_code);
/*************************************************
* Restructure this datatype ("outer_type")
* so that it still starts at 0, but its extent
* is the full extent in this dimension.
*************************************************/
if (displacement[1] > 0 || (int)extent_len < displacement[2]) {
block_length[0] = 1;
block_length[1] = 1;
block_length[2] = 1;
displacement[0] = 0;
old_types[0] = MPI_LB;
old_types[1] = outer_type;
old_types[2] = MPI_UB;
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "%s: i=%d Extending struct type\n"
"***displacements: %d, %d, %d\n",
FUNC, i, displacement[0], displacement[1], displacement[2]);
#endif
mpi_code = MPI_Type_struct ( 3, /* count */
block_length, /* blocklengths */
displacement, /* displacements */
old_types, /* old types */
&inner_type); /* new type */
MPI_Type_free (&outer_type);
if (mpi_code!=MPI_SUCCESS)
HMPI_GOTO_ERROR(FAIL, "couldn't resize MPI vector type", mpi_code);
}
else {
inner_type = outer_type;
}
} /* end for */
/***************************
* End of loop, walking
* thru dimensions.
***************************/
/* At this point inner_type is actually the outermost type, even for 0-trip loop */
*new_type = inner_type;
if (MPI_SUCCESS != (mpi_code= MPI_Type_commit( new_type )))
HMPI_GOTO_ERROR(FAIL, "MPI_Type_commit failed", mpi_code);
/* fill in the remaining return values */
*count = 1; /* only have to move one of these suckers! */
*extra_offset = 0;
*is_derived_type = 1;
HGOTO_DONE(SUCCEED);
empty:
/* special case: empty hyperslab */
*new_type = MPI_BYTE;
*count = 0;
*extra_offset = 0;
*is_derived_type = 0;
done:
/* Release selection iterator */
if(sel_iter_init) {
if (H5S_SELECT_ITER_RELEASE(&sel_iter)<0)
HDONE_ERROR (H5E_DATASPACE, H5E_CANTRELEASE, FAIL, "unable to release selection iterator");
} /* end if */
#ifdef H5Smpi_DEBUG
HDfprintf(stderr, "Leave %s, count=%ld is_derived_type=%d\n",
FUNC, *count, *is_derived_type );
#endif
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_space_type
*
* Purpose: Translate an HDF5 dataspace selection into an MPI type.
* Currently handle only hyperslab and "all" selections.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: rky 980813
*
* Modifications:
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter
*
*-------------------------------------------------------------------------
*/
herr_t
H5S_mpio_space_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5S_mpio_space_type);
/* Check args */
assert (space);
/* Creat MPI type based on the kind of selection */
switch (H5S_GET_EXTENT_TYPE(space)) {
case H5S_NULL:
case H5S_SCALAR:
case H5S_SIMPLE:
switch(H5S_GET_SELECT_TYPE(space)) {
case H5S_SEL_NONE:
if ( H5S_mpio_none_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_ALL:
if ( H5S_mpio_all_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_POINTS:
/* not yet implemented */
ret_value = FAIL;
break;
case H5S_SEL_HYPERSLABS:
if(H5S_mpio_hyper_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
default:
assert("unknown selection type" && 0);
break;
} /* end switch */
break;
case H5S_COMPLEX:
/* not yet implemented */
HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "complex data spaces are not supported yet");
default:
assert("unknown data space type" && 0);
break;
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/*-------------------------------------------------------------------------
* Function: H5S_mpio_space_span_ type
*
* Purpose: Translate an HDF5 dataspace selection into a general
MPI derivewd datatype built with span-tree.
*
* Currently handle only hyperslab and "all" selections.
*
* Return: non-negative on success, negative on failure.
*
* Outputs: *new_type the MPI type corresponding to the selection
* *count how many objects of the new_type in selection
* (useful if this is the buffer type for xfer)
* *extra_offset Number of bytes of offset within dataset
* *is_derived_type 0 if MPI primitive type, 1 if derived
*
* Programmer: KY
*
* Modifications:
*
* Quincey Koziol, June 18, 2002
* Added 'extra_offset' parameter
*
*-------------------------------------------------------------------------
*/
herr_t
H5S_mpio_space_span_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type )
{
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5S_mpio_space_span_type);
/* Check args */
assert (space);
/* Creat MPI type based on the kind of selection */
switch (H5S_GET_EXTENT_TYPE(space)) {
case H5S_NULL:
case H5S_SCALAR:
case H5S_SIMPLE:
switch(H5S_GET_SELECT_TYPE(space)) {
case H5S_SEL_NONE:
if ( H5S_mpio_none_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_ALL:
if ( H5S_mpio_all_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type ) <0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
case H5S_SEL_POINTS:
/* not yet implemented */
ret_value = FAIL;
break;
case H5S_SEL_HYPERSLABS:
if(H5S_mpio_span_hyper_type( space, elmt_size,
/* out: */ new_type, count, extra_offset, is_derived_type )<0)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADTYPE, FAIL,"couldn't convert \"all\" selection to MPI type");
break;
default:
assert("unknown selection type" && 0);
break;
} /* end switch */
break;
case H5S_COMPLEX:
/* not yet implemented */
HGOTO_ERROR(H5E_DATASPACE, H5E_UNSUPPORTED, FAIL, "complex data spaces are not supported yet");
default:
assert("unknown data space type" && 0);
break;
}
done:
FUNC_LEAVE_NOAPI(ret_value);
}
/* The following codes have been used by Kent to test
general collective derived datatype functionality.
It should NOT be called by other routines except with
macro #ifdef KENT #endif
Nov. 11th, 2004 */
static herr_t
H5S_mpio_span_hyper_type( const H5S_t *space, size_t elmt_size,
/* out: */
MPI_Datatype *new_type,
size_t *count,
hsize_t *extra_offset,
hbool_t *is_derived_type ){
MPI_Datatype span_type;
H5S_hyper_span_t *ospan;
H5S_hyper_span_info_t *odown;
hsize_t *size;
int rank;
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOAPI_NOINIT(H5S_mpio_span_hyper_type);
/* Check args */
assert (space);
/* assert(sizeof(MPI_Aint) >= sizeof(elmt_size));?? */
/* Only for simple extent
rank = space->extent.u.simple.rank;
*/
rank = space->extent.rank;
size = HDcalloc((size_t)rank,sizeof(hsize_t));
if (0==elmt_size)
goto empty;
size = space->extent.size;
odown = space->select.sel_info.hslab->span_lst;
if(odown == NULL)
goto empty;
ospan = odown->head;
if(ospan == NULL)
goto empty;
obtain_datatype(size,ospan,&span_type,elmt_size,rank);
*new_type = span_type;
/* fill in the remaining return values */
*count = 1;
*extra_offset = 0;
*is_derived_type = 1;
HDfree(size);
HGOTO_DONE(SUCCEED);
empty:
/* special case: empty hyperslab */
*new_type = MPI_BYTE;
*count = 0;
*extra_offset = 0;
*is_derived_type = 0;
done:
FUNC_LEAVE_NOAPI(ret_value);
}
static herr_t obtain_datatype(const hsize_t size[], H5S_hyper_span_t* span,MPI_Datatype *span_type,
size_t elmt_size,int dimindex) {
int innercount,outercount;
MPI_Datatype bas_type,temp_type,tempinner_type;
MPI_Datatype *inner_type;
int inner_blocklen;
MPI_Aint inner_disp;
int *blocklen;
MPI_Aint *disp;
MPI_Aint stride;
MPI_Aint extent,lb;
H5S_hyper_span_info_t *down;
H5S_hyper_span_t *tspan;
MPI_Aint sizeaint,sizedtype;
hsize_t total_lowd,total_lowd1;
int i;
assert(span);
down = span->down;
tspan = span;
outercount = 0;
while(tspan) {
tspan = tspan->next;
outercount ++;
}
#ifdef H5_HAVE_MPI2
MPI_Type_extent(MPI_Aint,&sizeaint);
MPI_Type_extent(MPI_Datatype,&sizedtype);
blocklen = (int *)HDcalloc((size_t)outercount,sizeof(int));
disp = (MPI_Aint *)HDcalloc((size_t)outercount,sizeaint);
inner_type = (MPI_Datatype *)HDcalloc((size_t)outercount,sizedtype);
#else
blocklen = (int *)HDcalloc((size_t)outercount,sizeof(int));
disp = (MPI_Aint *)HDcalloc((size_t)outercount,sizeof(int));
inner_type = (MPI_Datatype *)HDcalloc((size_t)outercount,sizeof(int));
#endif
tspan = span;
outercount = 0;
if(down == NULL){
if(dimindex > 1) printf("wrong area \n");
MPI_Type_contiguous((int)elmt_size,MPI_BYTE,&bas_type);
MPI_Type_commit(&bas_type);
while(tspan){
disp[outercount] = (MPI_Aint)elmt_size * tspan->low;
blocklen[outercount] = tspan->nelem;
tspan = tspan->next;
outercount ++;
}
MPI_Type_hindexed(outercount,blocklen,disp,bas_type,&span_type);
}
else {/* dimindex is the rank of the dimension */
if(dimindex <2) printf("something is wrong \n");
/* Calculate the total bytes of the lower dimension */
total_lowd = 1; /* one dimension down */
total_lowd1 = 1; /* two dimensions down */
for ( i = 0; i < dimindex-1; i++)
total_lowd = total_lowd * size[i];
for ( i = 0; i < dimindex-2; i++)
total_lowd1 = total_lowd1 * size[i];
HDfprintf(stdout, " one dimension down size %Hu",total_lowd);
HDfprintf(stdout, " two dimension down size %Hu",total_lowd1);
while(tspan){
/* Displacement should be in byte and should have dimension information */
/* First using MPI Type vector to build derived data type for this span only */
/* Need to calculate the disp in byte for this dimension. */
/* Calculate the total bytes of the lower dimension */
disp[outercount] = tspan->low*total_lowd*elmt_size;
blocklen[outercount] = 1;
/* generating inner derived datatype by using MPI_Type_hvector */
obtain_datatype(size,tspan->down->head,&temp_type,elmt_size,dimindex-1);
/* inner_type[count] = temp_type; */
#ifdef H5_HAVE_MPI2
MPI_Type_get_extent(temp_type,&lb,&extent);
#else
MPI_Type_lb(temp_type,&lb);
MPI_Type_extent(temp_type,&extent);
#endif
/* building the inner vector datatype */
/* The following calculation of stride is wrong since stride is calculated
from the first element of the block to the first element of the next
block. */
/*stride = total_lowd1 * (size[dimindex-1]*elmt_size-extent-lb);*/
stride = total_lowd*elmt_size;
innercount = tspan->nelem;
MPI_Type_hvector(innercount,1,stride,temp_type,&tempinner_type);
MPI_Type_commit(&tempinner_type);
MPI_Type_free(&temp_type);
inner_type[outercount] = tempinner_type;
outercount ++;
tspan = tspan->next;
}
/* building the whole vector datatype */
MPI_Type_struct(outercount,blocklen,disp,inner_type,&span_type);
}
MPI_Type_commit(span_type);
if(down == NULL)
MPI_Type_free(&bas_type);
else {
MPI_Type_free(inner_type);
}
HDfree(inner_type);
HDfree(blocklen);
HDfree(disp);
}
#endif /* H5_HAVE_PARALLEL */
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