/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Copyright by The HDF Group. * * Copyright by the Board of Trustees of the University of Illinois. * * All rights reserved. * * * * This file is part of HDF5. The full HDF5 copyright notice, including * * terms governing use, modification, and redistribution, is contained in * * the files COPYING and Copyright.html. COPYING can be found at the root * * of the source code distribution tree; Copyright.html can be found at the * * root level of an installed copy of the electronic HDF5 document set and * * is linked from the top-level documents page. It can also be found at * * http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have * * access to either file, you may request a copy from help@hdfgroup.org. * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *//* * Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu> * Tuesday, June 16, 1998 * * Purpose: Point selection data space I/O functions. */#define H5S_PACKAGE/*suppress error about including H5Spkg */#include"H5private.h"/* Generic Functions */#include"H5Eprivate.h"/* Error handling */#include"H5FLprivate.h"/* Free Lists */#include"H5Iprivate.h"/* ID Functions */#include"H5MMprivate.h"/* Memory Management functions */#include"H5Spkg.h"/* Dataspace functions */#include"H5VMprivate.h"/* Vector functions *//* Static function prototypes *//* Selection callbacks */static herr_t H5S_point_copy(H5S_t *dst,const H5S_t *src, hbool_t share_selection);static herr_t H5S_point_get_seq_list(const H5S_t *space,unsigned flags,
H5S_sel_iter_t *iter,size_t maxseq,size_t maxbytes,size_t*nseq,size_t*nbytes, hsize_t *off,size_t*len);static herr_t H5S_point_release(H5S_t *space);static htri_t H5S_point_is_valid(const H5S_t *space);static hssize_t H5S_point_serial_size(const H5S_t *space);static herr_t H5S_point_serialize(const H5S_t *space,uint8_t**p);static herr_t H5S_point_deserialize(H5S_t *space,const uint8_t**p);static herr_t H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end);static herr_t H5S_point_offset(const H5S_t *space, hsize_t *off);static htri_t H5S_point_is_contiguous(const H5S_t *space);static htri_t H5S_point_is_single(const H5S_t *space);static htri_t H5S_point_is_regular(const H5S_t *space);static herr_t H5S_point_adjust_u(H5S_t *space,const hsize_t *offset);static herr_t H5S_point_project_scalar(const H5S_t *space, hsize_t *offset);static herr_t H5S_point_project_simple(const H5S_t *space, H5S_t *new_space, hsize_t *offset);static herr_t H5S_point_iter_init(H5S_sel_iter_t *iter,const H5S_t *space);/* Selection iteration callbacks */static herr_t H5S_point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords);static herr_t H5S_point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end);static hsize_t H5S_point_iter_nelmts(const H5S_sel_iter_t *iter);static htri_t H5S_point_iter_has_next_block(const H5S_sel_iter_t *iter);static herr_t H5S_point_iter_next(H5S_sel_iter_t *sel_iter,size_t nelem);static herr_t H5S_point_iter_next_block(H5S_sel_iter_t *sel_iter);static herr_t H5S_point_iter_release(H5S_sel_iter_t *sel_iter);/* Selection properties for point selections */const H5S_select_class_t H5S_sel_point[1] = {{
H5S_SEL_POINTS,/* Methods on selection */
H5S_point_copy,
H5S_point_get_seq_list,
H5S_point_release,
H5S_point_is_valid,
H5S_point_serial_size,
H5S_point_serialize,
H5S_point_deserialize,
H5S_point_bounds,
H5S_point_offset,
H5S_point_is_contiguous,
H5S_point_is_single,
H5S_point_is_regular,
H5S_point_adjust_u,
H5S_point_project_scalar,
H5S_point_project_simple,
H5S_point_iter_init,}};/* Iteration properties for point selections */static const H5S_sel_iter_class_t H5S_sel_iter_point[1] = {{
H5S_SEL_POINTS,/* Methods on selection iterator */
H5S_point_iter_coords,
H5S_point_iter_block,
H5S_point_iter_nelmts,
H5S_point_iter_has_next_block,
H5S_point_iter_next,
H5S_point_iter_next_block,
H5S_point_iter_release,}};/* Declare a free list to manage the H5S_pnt_node_t struct */H5FL_DEFINE_STATIC(H5S_pnt_node_t);/* Declare a free list to manage the H5S_pnt_list_t struct */H5FL_DEFINE_STATIC(H5S_pnt_list_t);/*------------------------------------------------------------------------- * Function: H5S_point_iter_init * * Purpose: Initializes iteration information for point selection. * * Return: non-negative on success, negative on failure. * * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * * Modifications: * *------------------------------------------------------------------------- */static herr_t
H5S_point_iter_init(H5S_sel_iter_t *iter,const H5S_t *space){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(space && H5S_SEL_POINTS==H5S_GET_SELECT_TYPE(space));HDassert(iter);/* Initialize the number of points to iterate over */
iter->elmt_left=space->select.num_elem;/* Start at the head of the list of points */
iter->u.pnt.curr=space->select.sel_info.pnt_lst->head;/* Initialize type of selection iterator */
iter->type=H5S_sel_iter_point;FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_init() *//*------------------------------------------------------------------------- * Function: H5S_point_iter_coords * * Purpose: Retrieve the current coordinates of iterator for current * selection * * Return: non-negative on success, negative on failure * * Programmer: Quincey Koziol * Tuesday, April 22, 2003 * * Modifications: * *------------------------------------------------------------------------- */static herr_t
H5S_point_iter_coords(const H5S_sel_iter_t *iter, hsize_t *coords){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);HDassert(coords);/* Copy the offset of the current point */HDmemcpy(coords,iter->u.pnt.curr->pnt,sizeof(hsize_t)*iter->rank);FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_coords() *//*------------------------------------------------------------------------- * Function: H5S_point_iter_block * * Purpose: Retrieve the current block of iterator for current * selection * * Return: non-negative on success, negative on failure * * Programmer: Quincey Koziol * Monday, June 2, 2003 * * Modifications: * *------------------------------------------------------------------------- */static herr_t
H5S_point_iter_block(const H5S_sel_iter_t *iter, hsize_t *start, hsize_t *end){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);HDassert(start);HDassert(end);/* Copy the current point as a block */HDmemcpy(start,iter->u.pnt.curr->pnt,sizeof(hsize_t)*iter->rank);HDmemcpy(end,iter->u.pnt.curr->pnt,sizeof(hsize_t)*iter->rank);FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_block() *//*------------------------------------------------------------------------- * Function: H5S_point_iter_nelmts * * Purpose: Return number of elements left to process in iterator * * Return: non-negative number of elements on success, zero on failure * * Programmer: Quincey Koziol * Tuesday, June 16, 1998 * * Modifications: * *------------------------------------------------------------------------- */static hsize_t
H5S_point_iter_nelmts(const H5S_sel_iter_t *iter){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);FUNC_LEAVE_NOAPI(iter->elmt_left)}/* H5S_point_iter_nelmts() *//*-------------------------------------------------------------------------- NAME H5S_point_iter_has_next_block PURPOSE Check if there is another block left in the current iterator USAGE htri_t H5S_point_iter_has_next_block(iter) const H5S_sel_iter_t *iter; IN: Pointer to selection iterator RETURNS Non-negative (TRUE/FALSE) on success/Negative on failure DESCRIPTION Check if there is another block available in the selection iterator. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static htri_t
H5S_point_iter_has_next_block(const H5S_sel_iter_t *iter){
htri_t ret_value=TRUE;/* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);/* Check if there is another point in the list */if(iter->u.pnt.curr->next==NULL)HGOTO_DONE(FALSE);
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_iter_has_next_block() *//*-------------------------------------------------------------------------- NAME H5S_point_iter_next PURPOSE Increment selection iterator USAGE herr_t H5S_point_iter_next(iter, nelem) H5S_sel_iter_t *iter; IN: Pointer to selection iterator size_t nelem; IN: Number of elements to advance by RETURNS Non-negative on success/Negative on failure DESCRIPTION Advance selection iterator to the NELEM'th next element in the selection. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_iter_next(H5S_sel_iter_t *iter,size_t nelem){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);HDassert(nelem>0);/* Increment the iterator */while(nelem>0) {
iter->u.pnt.curr=iter->u.pnt.curr->next;
nelem--;}/* end while */FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_next() *//*-------------------------------------------------------------------------- NAME H5S_point_iter_next_block PURPOSE Increment selection iterator to next block USAGE herr_t H5S_point_iter_next_block(iter) H5S_sel_iter_t *iter; IN: Pointer to selection iterator RETURNS Non-negative on success/Negative on failure DESCRIPTION Advance selection iterator to the next block in the selection. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_iter_next_block(H5S_sel_iter_t *iter){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);/* Increment the iterator */
iter->u.pnt.curr=iter->u.pnt.curr->next;FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_next_block() *//*-------------------------------------------------------------------------- NAME H5S_point_iter_release PURPOSE Release point selection iterator information for a dataspace USAGE herr_t H5S_point_iter_release(iter) H5S_sel_iter_t *iter; IN: Pointer to selection iterator RETURNS Non-negative on success/Negative on failure DESCRIPTION Releases all information for a dataspace point selection iterator GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_iter_release(H5S_sel_iter_t H5_ATTR_UNUSED * iter){
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(iter);FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_iter_release() *//*-------------------------------------------------------------------------- NAME H5S_point_add PURPOSE Add a series of elements to a point selection USAGE herr_t H5S_point_add(space, num_elem, coord) H5S_t *space; IN: Dataspace of selection to modify size_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord[]; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure DESCRIPTION This function adds elements to the current point selection for a dataspace GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_add(H5S_t *space, H5S_seloper_t op,size_t num_elem,const hsize_t *coord){
H5S_pnt_node_t *top = NULL, *curr = NULL, *new_node = NULL;/* Point selection nodes */unsigned u;/* Counter */
herr_t ret_value = SUCCEED;/* Return value */
FUNC_ENTER_NOAPI_NOINIT
HDassert(space);HDassert(num_elem >0);HDassert(coord);HDassert(op == H5S_SELECT_SET || op == H5S_SELECT_APPEND || op == H5S_SELECT_PREPEND);for(u =0; u < num_elem; u++) {/* Allocate space for the new node */if(NULL == (new_node =H5FL_MALLOC(H5S_pnt_node_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point node")/* Initialize fields in node */
new_node->next = NULL;if(NULL == (new_node->pnt = (hsize_t *)H5MM_malloc(space->extent.rank *sizeof(hsize_t))))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate coordinate information")/* Copy over the coordinates */HDmemcpy(new_node->pnt, coord + (u * space->extent.rank), (space->extent.rank *sizeof(hsize_t)));/* Link into list */if(top == NULL)
top = new_node;else
curr->next = new_node;
curr = new_node;}/* end for */
new_node = NULL;/* Insert the list of points selected in the proper place */if(op == H5S_SELECT_SET || op == H5S_SELECT_PREPEND) {/* Append current list, if there is one */if(space->select.sel_info.pnt_lst->head != NULL)
curr->next = space->select.sel_info.pnt_lst->head;/* Put new list in point selection */
space->select.sel_info.pnt_lst->head = top;}/* end if */else{/* op==H5S_SELECT_APPEND */
H5S_pnt_node_t *tmp_node;/* Temporary point selection node */
tmp_node = space->select.sel_info.pnt_lst->head;if(tmp_node != NULL) {while(tmp_node->next != NULL)
tmp_node = tmp_node->next;/* Append new list to point selection */
tmp_node->next = top;}/* end if */else
space->select.sel_info.pnt_lst->head = top;}/* end else *//* Set the number of elements in the new selection */if(op == H5S_SELECT_SET)
space->select.num_elem = num_elem;else
space->select.num_elem += num_elem;
done:if(ret_value <0) {/* Release possibly partially initialized new node */if(new_node)
new_node =H5FL_FREE(H5S_pnt_node_t, new_node);/* Release possible linked list of nodes */while(top) {
curr = top->next;H5MM_xfree(top->pnt);
top =H5FL_FREE(H5S_pnt_node_t, top);
top = curr;}/* end while */}/* end if */FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_add() *//*-------------------------------------------------------------------------- NAME H5S_point_release PURPOSE Release point selection information for a dataspace USAGE herr_t H5S_point_release(space) H5S_t *space; IN: Pointer to dataspace RETURNS Non-negative on success/Negative on failure DESCRIPTION Releases all point selection information for a dataspace GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_release(H5S_t *space){
H5S_pnt_node_t *curr, *next;/* Point selection nodes */
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(space);/* Delete all the nodes from the list */
curr = space->select.sel_info.pnt_lst->head;while(curr != NULL) {
next = curr->next;H5MM_xfree(curr->pnt);
curr =H5FL_FREE(H5S_pnt_node_t, curr);
curr = next;}/* end while *//* Free & reset the point list header */
space->select.sel_info.pnt_lst =H5FL_FREE(H5S_pnt_list_t, space->select.sel_info.pnt_lst);/* Reset the number of elements in the selection */
space->select.num_elem =0;FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_release() *//*-------------------------------------------------------------------------- NAME H5S_select_elements PURPOSE Specify a series of elements in the dataspace to select USAGE herr_t H5S_select_elements(dsid, op, num_elem, coord) hid_t dsid; IN: Dataspace ID of selection to modify H5S_seloper_t op; IN: Operation to perform on current selection size_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure DESCRIPTION This function selects array elements to be included in the selection for the dataspace. The COORD array is a 2-D array of size <dataspace rank> by NUM_ELEM (ie. a list of coordinates in the dataspace). The order of the element coordinates in the COORD array specifies the order that the array elements are iterated through when I/O is performed. Duplicate coordinates are not checked for. The selection operator, OP, determines how the new selection is to be combined with the existing selection for the dataspace. Currently, only H5S_SELECT_SET is supported, which replaces the existing selection with the one defined in this call. When operators other than H5S_SELECT_SET are used to combine a new selection with an existing selection, the selection ordering is reset to 'C' array ordering. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/
herr_t
H5S_select_elements(H5S_t *space, H5S_seloper_t op,size_t num_elem,const hsize_t *coord){
herr_t ret_value = SUCCEED;/* return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */HDassert(space);HDassert(num_elem);HDassert(coord);HDassert(op == H5S_SELECT_SET || op == H5S_SELECT_APPEND || op == H5S_SELECT_PREPEND);/* If we are setting a new selection, remove current selection first */if(op == H5S_SELECT_SET ||H5S_GET_SELECT_TYPE(space) != H5S_SEL_POINTS)if(H5S_SELECT_RELEASE(space) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL,"can't release point selection")/* Allocate space for the point selection information if necessary */if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_POINTS || space->select.sel_info.pnt_lst == NULL)if(NULL == (space->select.sel_info.pnt_lst =H5FL_CALLOC(H5S_pnt_list_t)))HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,"can't allocate element information")/* Add points to selection */if(H5S_point_add(space, op, num_elem, coord) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINSERT, FAIL,"can't insert elements")/* Set selection type */
space->select.type = H5S_sel_point;
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_select_elements() *//*-------------------------------------------------------------------------- NAME H5S_point_copy PURPOSE Copy a selection from one dataspace to another USAGE herr_t H5S_point_copy(dst, src) H5S_t *dst; OUT: Pointer to the destination dataspace H5S_t *src; IN: Pointer to the source dataspace RETURNS Non-negative on success/Negative on failure DESCRIPTION Copies all the point selection information from the source dataspace to the destination dataspace. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_copy(H5S_t *dst,const H5S_t *src, hbool_t H5_ATTR_UNUSED share_selection){
H5S_pnt_node_t *curr, *new_node, *new_tail;/* Point information nodes */
herr_t ret_value = SUCCEED;/* Return value */
FUNC_ENTER_NOAPI_NOINIT
HDassert(src);HDassert(dst);/* Allocate room for the head of the point list */if(NULL == (dst->select.sel_info.pnt_lst =H5FL_MALLOC(H5S_pnt_list_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point list node")
curr = src->select.sel_info.pnt_lst->head;
new_tail = NULL;while(curr) {/* Create new point */if(NULL == (new_node =H5FL_MALLOC(H5S_pnt_node_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point node")
new_node->next = NULL;if(NULL == (new_node->pnt = (hsize_t *)H5MM_malloc(src->extent.rank *sizeof(hsize_t)))) {
new_node =H5FL_FREE(H5S_pnt_node_t, new_node);HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate coordinate information")}/* end if *//* Copy over the point's coordinates */HDmemcpy(new_node->pnt, curr->pnt, (src->extent.rank *sizeof(hsize_t)));/* Keep the order the same when copying */if(NULL == new_tail)
new_tail = dst->select.sel_info.pnt_lst->head = new_node;else{
new_tail->next = new_node;
new_tail = new_node;}/* end else */
curr = curr->next;}/* end while */
done:if(ret_value <0&& dst->select.sel_info.pnt_lst) {/* Traverse the (incomplete?) dst list, freeing all memory */
curr = dst->select.sel_info.pnt_lst->head;while(curr) {
H5S_pnt_node_t *tmp_node = curr;
curr->pnt = (hsize_t *)H5MM_xfree(curr->pnt);
curr = curr->next;
tmp_node =H5FL_FREE(H5S_pnt_node_t, tmp_node);}/* end while */
dst->select.sel_info.pnt_lst =H5FL_FREE(H5S_pnt_list_t, dst->select.sel_info.pnt_lst);}/* end if */FUNC_LEAVE_NOAPI(ret_value)}/* end H5S_point_copy() *//*-------------------------------------------------------------------------- NAME H5S_point_is_valid PURPOSE Check whether the selection fits within the extent, with the current offset defined. USAGE htri_t H5S_point_is_valid(space); H5S_t *space; IN: Dataspace pointer to query RETURNS TRUE if the selection fits within the extent, FALSE if it does not and Negative on an error. DESCRIPTION Determines if the current selection at the current offet fits within the extent for the dataspace. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static htri_t
H5S_point_is_valid(const H5S_t *space){
H5S_pnt_node_t *curr;/* Point information nodes */unsigned u;/* Counter */
htri_t ret_value=TRUE;/* return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);/* Check each point to determine whether selection+offset is within extent */
curr = space->select.sel_info.pnt_lst->head;while(curr != NULL) {/* Check each dimension */for(u =0; u < space->extent.rank; u++) {/* Check if an offset has been defined *//* Bounds check the selected point + offset against the extent */if(((curr->pnt[u] + (hsize_t)space->select.offset[u]) > space->extent.size[u])|| (((hssize_t)curr->pnt[u] + space->select.offset[u]) <0))HGOTO_DONE(FALSE)}/* end for */
curr = curr->next;}/* end while */
done:FUNC_LEAVE_NOAPI(ret_value)}/* end H5S_point_is_valid() *//*-------------------------------------------------------------------------- NAME H5Sget_select_elem_npoints PURPOSE Get the number of points in current element selection USAGE hssize_t H5Sget_select_elem_npoints(dsid) hid_t dsid; IN: Dataspace ID of selection to query RETURNS The number of element points in selection on success, negative on failure DESCRIPTION Returns the number of element points in current selection for dataspace. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/
hssize_t
H5Sget_select_elem_npoints(hid_t spaceid){
H5S_t *space;/* Dataspace to modify selection of */
hssize_t ret_value;/* return value */FUNC_ENTER_API(FAIL)H5TRACE1("Hs","i", spaceid);/* Check args */if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"not a data space")if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_POINTS)HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"not an element selection")
ret_value = (hssize_t)H5S_GET_SELECT_NPOINTS(space);
done:FUNC_LEAVE_API(ret_value)}/* H5Sget_select_elem_npoints() *//*-------------------------------------------------------------------------- NAME H5S_point_serial_size PURPOSE Determine the number of bytes needed to store the serialized point selection information. USAGE hssize_t H5S_point_serial_size(space) H5S_t *space; IN: Dataspace pointer to query RETURNS The number of bytes required on success, negative on an error. DESCRIPTION Determines the number of bytes required to serialize the current point selection information for storage on disk. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static hssize_t
H5S_point_serial_size(const H5S_t *space){
H5S_pnt_node_t *curr;/* Point information nodes */
hssize_t ret_value;/* return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);/* Basic number of bytes required to serialize point selection: * <type (4 bytes)> + <version (4 bytes)> + <padding (4 bytes)> + * <length (4 bytes)> + <rank (4 bytes)> + <# of points (4 bytes)> = 24 bytes */
ret_value=24;/* Count points in selection */
curr=space->select.sel_info.pnt_lst->head;while(curr!=NULL) {/* Add 4 bytes times the rank for each element selected */
ret_value+=4*space->extent.rank;
curr=curr->next;}/* end while */FUNC_LEAVE_NOAPI(ret_value)}/* end H5S_point_serial_size() *//*-------------------------------------------------------------------------- NAME H5S_point_serialize PURPOSE Serialize the current selection into a user-provided buffer. USAGE herr_t H5S_point_serialize(space, p) const H5S_t *space; IN: Dataspace with selection to serialize uint8_t **p; OUT: Pointer to buffer to put serialized selection. Will be advanced to end of serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION Serializes the current element selection into a buffer. (Primarily for storing on disk). GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_serialize(const H5S_t *space,uint8_t**p){
H5S_pnt_node_t *curr;/* Point information nodes */uint8_t*lenp;/* pointer to length location for later storage */uint32_t len=0;/* number of bytes used */unsigned u;/* local counting variable */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);/* Store the preamble information */UINT32ENCODE(*p, (uint32_t)H5S_GET_SELECT_TYPE(space));/* Store the type of selection */UINT32ENCODE(*p, (uint32_t)1);/* Store the version number */UINT32ENCODE(*p, (uint32_t)0);/* Store the un-used padding */
lenp=*p;/* keep the pointer to the length location for later */*p+=4;/* skip over space for length *//* Encode number of dimensions */UINT32ENCODE(*p, (uint32_t)space->extent.rank);
len+=4;/* Encode number of elements */UINT32ENCODE(*p, (uint32_t)space->select.num_elem);
len+=4;/* Encode each point in selection */
curr=space->select.sel_info.pnt_lst->head;while(curr!=NULL) {/* Add 4 bytes times the rank for each element selected */
len+=4*space->extent.rank;/* Encode each point */for(u=0; u<space->extent.rank; u++)UINT32ENCODE(*p, (uint32_t)curr->pnt[u]);
curr=curr->next;}/* end while *//* Encode length */UINT32ENCODE(lenp, (uint32_t)len);/* Store the length of the extra information */FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_serialize() *//*-------------------------------------------------------------------------- NAME H5S_point_deserialize PURPOSE Deserialize the current selection from a user-provided buffer. USAGE herr_t H5S_point_deserialize(space, p) H5S_t *space; IN/OUT: Dataspace pointer to place selection into uint8 **p; OUT: Pointer to buffer holding serialized selection. Will be advanced to end of serialized selection. RETURNS Non-negative on success/Negative on failure DESCRIPTION Deserializes the current selection into a buffer. (Primarily for retrieving from disk). GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_deserialize(H5S_t *space,const uint8_t**p){
H5S_seloper_t op=H5S_SELECT_SET;/* Selection operation */unsigned rank;/* Rank of points */size_t num_elem=0;/* Number of elements in selection */
hsize_t *coord=NULL, *tcoord;/* Pointer to array of elements */unsigned i, j;/* local counting variables */
herr_t ret_value = SUCCEED;/* return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */HDassert(space);HDassert(p);HDassert(*p);/* Deserialize points to select *//* (The header and rank have already beed decoded) */
rank = space->extent.rank;/* Retrieve rank from space */UINT32DECODE(*p, num_elem);/* decode the number of points *//* Allocate space for the coordinates */if(NULL == (coord = (hsize_t *)H5MM_malloc(num_elem * rank *sizeof(hsize_t))))HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL,"can't allocate coordinate information")/* Retrieve the coordinates from the buffer */for(tcoord = coord, i =0; i < num_elem; i++)for(j =0; j < (unsigned)rank; j++, tcoord++)UINT32DECODE(*p, *tcoord);/* Select points */if(H5S_select_elements(space, op, num_elem, (const hsize_t *)coord) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL,"can't change selection")
done:/* Free the coordinate array if necessary */if(coord != NULL)H5MM_xfree(coord);FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_deserialize() *//*-------------------------------------------------------------------------- NAME H5S_get_select_elem_pointlist PURPOSE Get the list of element points currently selected USAGE herr_t H5S_get_select_elem_pointlist(space, hsize_t *buf) H5S_t *space; IN: Dataspace pointer of selection to query hsize_t startpoint; IN: Element point to start with hsize_t numpoints; IN: Number of element points to get hsize_t *buf; OUT: List of element points selected RETURNS Non-negative on success, negative on failure DESCRIPTION Puts a list of the element points into the user's buffer. The points start with the 'startpoint'th block in the list of points and put 'numpoints' number of points into the user's buffer (or until the end of the list of points, whichever happen first) The point coordinates have the same dimensionality (rank) as the dataspace they are located within. The list of points is formatted as follows: <coordinate> followed by the next coordinate, etc. until all the point information in the selection have been put into the user's buffer. The points are returned in the order they will be interated through when a selection is read/written from/to disk. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_get_select_elem_pointlist(H5S_t *space, hsize_t startpoint, hsize_t numpoints, hsize_t *buf){
H5S_pnt_node_t *node;/* Point node */unsigned rank;/* Dataspace rank */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);HDassert(buf);/* Get the dataspace extent rank */
rank = space->extent.rank;/* Get the head of the point list */
node = space->select.sel_info.pnt_lst->head;/* Iterate to the first point to return */while(node != NULL && startpoint >0) {
startpoint--;
node = node->next;}/* end while *//* Iterate through the node, copying each point's information */while(node != NULL && numpoints >0) {HDmemcpy(buf, node->pnt,sizeof(hsize_t) * rank);
buf += rank;
numpoints--;
node = node->next;}/* end while */FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_get_select_elem_pointlist() *//*-------------------------------------------------------------------------- NAME H5Sget_select_elem_pointlist PURPOSE Get the list of element points currently selected USAGE herr_t H5Sget_select_elem_pointlist(dsid, hsize_t *buf) hid_t dsid; IN: Dataspace ID of selection to query hsize_t startpoint; IN: Element point to start with hsize_t numpoints; IN: Number of element points to get hsize_t buf[]; OUT: List of element points selected RETURNS Non-negative on success, negative on failure DESCRIPTION Puts a list of the element points into the user's buffer. The points start with the 'startpoint'th block in the list of points and put 'numpoints' number of points into the user's buffer (or until the end of the list of points, whichever happen first) The point coordinates have the same dimensionality (rank) as the dataspace they are located within. The list of points is formatted as follows: <coordinate> followed by the next coordinate, etc. until all the point information in the selection have been put into the user's buffer. The points are returned in the order they will be interated through when a selection is read/written from/to disk. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/
herr_t
H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint,
hsize_t numpoints, hsize_t buf[/*numpoints*/]){
H5S_t *space;/* Dataspace to modify selection of */
herr_t ret_value;/* return value */FUNC_ENTER_API(FAIL)H5TRACE4("e","ihh*[a2]h", spaceid, startpoint, numpoints, buf);/* Check args */if(NULL == buf)HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,"invalid pointer")if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"not a data space")if(H5S_GET_SELECT_TYPE(space) != H5S_SEL_POINTS)HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"not a point selection")
ret_value =H5S_get_select_elem_pointlist(space, startpoint, numpoints, buf);
done:FUNC_LEAVE_API(ret_value)}/* H5Sget_select_elem_pointlist() *//*-------------------------------------------------------------------------- NAME H5S_point_bounds PURPOSE Gets the bounding box containing the selection. USAGE herr_t H5S_point_bounds(space, start, end) H5S_t *space; IN: Dataspace pointer of selection to query hsize_t *start; OUT: Starting coordinate of bounding box hsize_t *end; OUT: Opposite coordinate of bounding box RETURNS Non-negative on success, negative on failure DESCRIPTION Retrieves the bounding box containing the current selection and places it into the user's buffers. The start and end buffers must be large enough to hold the dataspace rank number of coordinates. The bounding box exactly contains the selection, ie. if a 2-D element selection is currently defined with the following points: (4,5), (6,8) (10,7), the bounding box with be (4, 5), (10, 8). The bounding box calculations _does_ include the current offset of the selection within the dataspace extent. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_bounds(const H5S_t *space, hsize_t *start, hsize_t *end){
H5S_pnt_node_t *node;/* Point node */unsigned rank;/* Dataspace rank */unsigned u;/* index variable */
herr_t ret_value = SUCCEED;/* Return value */
FUNC_ENTER_NOAPI_NOINIT
HDassert(space);HDassert(start);HDassert(end);/* Get the dataspace extent rank */
rank = space->extent.rank;/* Set the start and end arrays up */for(u =0; u < rank; u++) {
start[u] = HSIZET_MAX;
end[u] =0;}/* end for *//* Iterate through the node, checking the bounds on each element */
node = space->select.sel_info.pnt_lst->head;while(node != NULL) {for(u =0; u < rank; u++) {/* Check for offset moving selection negative */if(((hssize_t)node->pnt[u] + space->select.offset[u]) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL,"offset moves selection out of bounds")if(start[u] > (node->pnt[u] + space->select.offset[u]))
start[u] = node->pnt[u] + space->select.offset[u];if(end[u] < (node->pnt[u] + space->select.offset[u]))
end[u] = node->pnt[u] + space->select.offset[u];}/* end for */
node = node->next;}/* end while */
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_bounds() *//*-------------------------------------------------------------------------- NAME H5S_point_offset PURPOSE Gets the linear offset of the first element for the selection. USAGE herr_t H5S_point_offset(space, offset) const H5S_t *space; IN: Dataspace pointer of selection to query hsize_t *offset; OUT: Linear offset of first element in selection RETURNS Non-negative on success, negative on failure DESCRIPTION Retrieves the linear offset (in "units" of elements) of the first element selected within the dataspace. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS Calling this function on a "none" selection returns fail. EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_offset(const H5S_t *space, hsize_t *offset){const hsize_t *pnt;/* Pointer to a selected point's coordinates */const hssize_t *sel_offset;/* Pointer to the selection's offset */const hsize_t *dim_size;/* Pointer to a dataspace's extent */
hsize_t accum;/* Accumulator for dimension sizes */int i;/* index variable */
herr_t ret_value = SUCCEED;/* Return value */FUNC_ENTER_NOAPI(FAIL)HDassert(space);HDassert(offset);/* Start at linear offset 0 */*offset =0;/* Set up pointers to arrays of values */
pnt = space->select.sel_info.pnt_lst->head->pnt;
sel_offset = space->select.offset;
dim_size = space->extent.size;/* Loop through coordinates, calculating the linear offset */
accum =1;for(i = (int)space->extent.rank -1; i >=0; i--) {
hssize_t pnt_offset = (hssize_t)pnt[i] + sel_offset[i];/* Point's offset in this dimension *//* Check for offset moving selection out of the dataspace */if(pnt_offset <0|| (hsize_t)pnt_offset >= dim_size[i])HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL,"offset moves selection out of bounds")/* Add the point's offset in this dimension to the total linear offset */*offset += (hsize_t)pnt_offset * accum;/* Increase the accumulator */
accum *= dim_size[i];}/* end for */
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_offset() *//*-------------------------------------------------------------------------- NAME H5S_point_is_contiguous PURPOSE Check if a point selection is contiguous within the dataspace extent. USAGE htri_t H5S_point_is_contiguous(space) H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION Checks to see if the current selection in the dataspace is contiguous. This is primarily used for reading the entire selection in one swoop. This code currently doesn't properly check for contiguousness when there is more than one point, as that would take a lot of extra coding that we don't need now. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static htri_t
H5S_point_is_contiguous(const H5S_t *space){
htri_t ret_value;/* return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);/* One point is definitely contiguous */if(space->select.num_elem==1)
ret_value=TRUE;else/* More than one point might be contiguous, but it's complex to check and we don't need it right now */
ret_value=FALSE;FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_is_contiguous() *//*-------------------------------------------------------------------------- NAME H5S_point_is_single PURPOSE Check if a point selection is single within the dataspace extent. USAGE htri_t H5S_point_is_single(space) H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION Checks to see if the current selection in the dataspace is a single block. This is primarily used for reading the entire selection in one swoop. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static htri_t
H5S_point_is_single(const H5S_t *space){
htri_t ret_value;/* return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);/* One point is definitely 'single' :-) */if(space->select.num_elem==1)
ret_value=TRUE;else
ret_value=FALSE;FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_is_single() *//*-------------------------------------------------------------------------- NAME H5S_point_is_regular PURPOSE Check if a point selection is "regular" USAGE htri_t H5S_point_is_regular(space) const H5S_t *space; IN: Dataspace pointer to check RETURNS TRUE/FALSE/FAIL DESCRIPTION Checks to see if the current selection in a dataspace is the a regular pattern. This is primarily used for reading the entire selection in one swoop. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS Doesn't check for points selected to be next to one another in a regular pattern yet. EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static htri_t
H5S_point_is_regular(const H5S_t *space){
htri_t ret_value;/* return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Check args */HDassert(space);/* Only simple check for regular points for now... */if(space->select.num_elem==1)
ret_value=TRUE;else
ret_value=FALSE;FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_is_regular() *//*-------------------------------------------------------------------------- NAME H5S_point_adjust_u PURPOSE Adjust a "point" selection by subtracting an offset USAGE herr_t H5S_point_adjust_u(space, offset) H5S_t *space; IN/OUT: Pointer to dataspace to adjust const hsize_t *offset; IN: Offset to subtract RETURNS Non-negative on success, negative on failure DESCRIPTION Moves a point selection by subtracting an offset from it. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_adjust_u(H5S_t *space,const hsize_t *offset){
H5S_pnt_node_t *node;/* Point node */unsigned rank;/* Dataspace rank */
FUNC_ENTER_NOAPI_NOINIT_NOERR
HDassert(space);HDassert(offset);/* Iterate through the nodes, checking the bounds on each element */
node = space->select.sel_info.pnt_lst->head;
rank = space->extent.rank;while(node) {unsigned u;/* Local index variable *//* Adjust each coordinate for point node */for(u =0; u < rank; u++) {/* Check for offset moving selection negative */HDassert(node->pnt[u] >= offset[u]);/* Adjust node's coordinate location */
node->pnt[u] -= offset[u];}/* end for *//* Advance to next point node in selection */
node = node->next;}/* end while */FUNC_LEAVE_NOAPI(SUCCEED)}/* H5S_point_adjust_u() *//*------------------------------------------------------------------------- * Function: H5S_point_project_scalar * * Purpose: Projects a single element point selection into a scalar * dataspace * * Return: non-negative on success, negative on failure. * * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- */static herr_t
H5S_point_project_scalar(const H5S_t *space, hsize_t *offset){const H5S_pnt_node_t *node;/* Point node */
herr_t ret_value = SUCCEED;/* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */HDassert(space && H5S_SEL_POINTS ==H5S_GET_SELECT_TYPE(space));HDassert(offset);/* Get the head of the point list */
node = space->select.sel_info.pnt_lst->head;/* Check for more than one point selected */if(node->next)HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL,"point selection of one element has more than one node!")/* Calculate offset of selection in projected buffer */*offset =H5VM_array_offset(space->extent.rank, space->extent.size, node->pnt);
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_project_scalar() *//*------------------------------------------------------------------------- * Function: H5S_point_project_simple * * Purpose: Projects a point selection onto/into a simple dataspace * of a different rank * * Return: non-negative on success, negative on failure. * * Programmer: Quincey Koziol * Sunday, July 18, 2010 * *------------------------------------------------------------------------- */static herr_t
H5S_point_project_simple(const H5S_t *base_space, H5S_t *new_space, hsize_t *offset){const H5S_pnt_node_t *base_node;/* Point node in base space */
H5S_pnt_node_t *new_node;/* Point node in new space */
H5S_pnt_node_t *prev_node;/* Previous point node in new space */unsigned rank_diff;/* Difference in ranks between spaces */
herr_t ret_value = SUCCEED;/* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */HDassert(base_space && H5S_SEL_POINTS ==H5S_GET_SELECT_TYPE(base_space));HDassert(new_space);HDassert(offset);/* We are setting a new selection, remove any current selection in new dataspace */if(H5S_SELECT_RELEASE(new_space) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL,"can't release selection")/* Allocate room for the head of the point list */if(NULL == (new_space->select.sel_info.pnt_lst =H5FL_MALLOC(H5S_pnt_list_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point list node")/* Check if the new space's rank is < or > base space's rank */if(new_space->extent.rank < base_space->extent.rank) {
hsize_t block[H5S_MAX_RANK];/* Block selected in base dataspace *//* Compute the difference in ranks */
rank_diff = base_space->extent.rank - new_space->extent.rank;/* Calculate offset of selection in projected buffer */HDmemset(block,0,sizeof(block));HDmemcpy(block, base_space->select.sel_info.pnt_lst->head->pnt,sizeof(hsize_t) * rank_diff);*offset =H5VM_array_offset(base_space->extent.rank, base_space->extent.size, block);/* Iterate through base space's point nodes, copying the point information */
base_node = base_space->select.sel_info.pnt_lst->head;
prev_node = NULL;while(base_node) {/* Create new point */if(NULL == (new_node =H5FL_MALLOC(H5S_pnt_node_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point node")
new_node->next = NULL;if(NULL == (new_node->pnt = (hsize_t *)H5MM_malloc(new_space->extent.rank *sizeof(hsize_t)))) {
new_node =H5FL_FREE(H5S_pnt_node_t, new_node);HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate coordinate information")}/* end if *//* Copy over the point's coordinates */HDmemcpy(new_node->pnt, &base_node->pnt[rank_diff], (new_space->extent.rank *sizeof(hsize_t)));/* Keep the order the same when copying */if(NULL == prev_node)
prev_node = new_space->select.sel_info.pnt_lst->head = new_node;else{
prev_node->next = new_node;
prev_node = new_node;}/* end else *//* Advance to next node */
base_node = base_node->next;}/* end while */}/* end if */else{HDassert(new_space->extent.rank > base_space->extent.rank);/* Compute the difference in ranks */
rank_diff = new_space->extent.rank - base_space->extent.rank;/* The offset is zero when projected into higher dimensions */*offset =0;/* Iterate through base space's point nodes, copying the point information */
base_node = base_space->select.sel_info.pnt_lst->head;
prev_node = NULL;while(base_node) {/* Create new point */if(NULL == (new_node =H5FL_MALLOC(H5S_pnt_node_t)))HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate point node")
new_node->next = NULL;if(NULL == (new_node->pnt = (hsize_t *)H5MM_malloc(new_space->extent.rank *sizeof(hsize_t)))) {
new_node =H5FL_FREE(H5S_pnt_node_t, new_node);HGOTO_ERROR(H5E_DATASPACE, H5E_CANTALLOC, FAIL,"can't allocate coordinate information")}/* end if *//* Copy over the point's coordinates */HDmemset(new_node->pnt,0,sizeof(hsize_t) * rank_diff);HDmemcpy(&new_node->pnt[rank_diff], base_node->pnt, (new_space->extent.rank *sizeof(hsize_t)));/* Keep the order the same when copying */if(NULL == prev_node)
prev_node = new_space->select.sel_info.pnt_lst->head = new_node;else{
prev_node->next = new_node;
prev_node = new_node;}/* end else *//* Advance to next node */
base_node = base_node->next;}/* end while */}/* end else *//* Number of elements selected will be the same */
new_space->select.num_elem = base_space->select.num_elem;/* Set selection type */
new_space->select.type = H5S_sel_point;
done:FUNC_LEAVE_NOAPI(ret_value)}/* H5S_point_project_simple() *//*-------------------------------------------------------------------------- NAME H5Sselect_elements PURPOSE Specify a series of elements in the dataspace to select USAGE herr_t H5Sselect_elements(dsid, op, num_elem, coord) hid_t dsid; IN: Dataspace ID of selection to modify H5S_seloper_t op; IN: Operation to perform on current selection size_t num_elem; IN: Number of elements in COORD array. const hsize_t *coord; IN: The location of each element selected RETURNS Non-negative on success/Negative on failure DESCRIPTION This function selects array elements to be included in the selection for the dataspace. The COORD array is a 2-D array of size <dataspace rank> by NUM_ELEM (ie. a list of coordinates in the dataspace). The order of the element coordinates in the COORD array specifies the order that the array elements are iterated through when I/O is performed. Duplicate coordinates are not checked for. The selection operator, OP, determines how the new selection is to be combined with the existing selection for the dataspace. Currently, only H5S_SELECT_SET is supported, which replaces the existing selection with the one defined in this call. When operators other than H5S_SELECT_SET are used to combine a new selection with an existing selection, the selection ordering is reset to 'C' array ordering. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/
herr_t
H5Sselect_elements(hid_t spaceid, H5S_seloper_t op,size_t num_elem,const hsize_t *coord){
H5S_t *space;/* Dataspace to modify selection of */
herr_t ret_value;/* Return value */FUNC_ENTER_API(FAIL)H5TRACE4("e","iSsz*h", spaceid, op, num_elem, coord);/* Check args */if(NULL == (space = (H5S_t *)H5I_object_verify(spaceid, H5I_DATASPACE)))HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"not a dataspace")if(H5S_SCALAR ==H5S_GET_EXTENT_TYPE(space))HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"point doesn't support H5S_SCALAR space")if(H5S_NULL ==H5S_GET_EXTENT_TYPE(space))HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL,"point doesn't support H5S_NULL space")if(coord == NULL || num_elem ==0)HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL,"elements not specified")if(!(op == H5S_SELECT_SET || op == H5S_SELECT_APPEND || op == H5S_SELECT_PREPEND))HGOTO_ERROR(H5E_ARGS, H5E_UNSUPPORTED, FAIL,"unsupported operation attempted")/* Call the real element selection routine */if((ret_value =H5S_select_elements(space, op, num_elem, coord)) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTDELETE, FAIL,"can't select elements")
done:FUNC_LEAVE_API(ret_value)}/* H5Sselect_elements() *//*-------------------------------------------------------------------------- NAME H5S_point_get_seq_list PURPOSE Create a list of offsets & lengths for a selection USAGE herr_t H5S_point_get_seq_list(space,flags,iter,maxseq,maxelem,nseq,nelem,off,len) H5S_t *space; IN: Dataspace containing selection to use. unsigned flags; IN: Flags for extra information about operation H5S_sel_iter_t *iter; IN/OUT: Selection iterator describing last position of interest in selection. size_t maxseq; IN: Maximum number of sequences to generate size_t maxelem; IN: Maximum number of elements to include in the generated sequences size_t *nseq; OUT: Actual number of sequences generated size_t *nelem; OUT: Actual number of elements in sequences generated hsize_t *off; OUT: Array of offsets size_t *len; OUT: Array of lengths RETURNS Non-negative on success/Negative on failure. DESCRIPTION Use the selection in the dataspace to generate a list of byte offsets and lengths for the region(s) selected. Start/Restart from the position in the ITER parameter. The number of sequences generated is limited by the MAXSEQ parameter and the number of sequences actually generated is stored in the NSEQ parameter. GLOBAL VARIABLES COMMENTS, BUGS, ASSUMPTIONS EXAMPLES REVISION LOG--------------------------------------------------------------------------*/static herr_t
H5S_point_get_seq_list(const H5S_t *space,unsigned flags, H5S_sel_iter_t *iter,size_t maxseq,size_t maxelem,size_t*nseq,size_t*nelem,
hsize_t *off,size_t*len){size_t io_left;/* The number of bytes left in the selection */size_t start_io_left;/* The initial number of bytes left in the selection */
H5S_pnt_node_t *node;/* Point node */
hsize_t dims[H5O_LAYOUT_NDIMS];/* Total size of memory buf */int ndims;/* Dimensionality of space*/
hsize_t acc;/* Coordinate accumulator */
hsize_t loc;/* Coordinate offset */size_t curr_seq;/* Current sequence being operated on */int i;/* Local index variable */
herr_t ret_value=SUCCEED;/* return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */HDassert(space);HDassert(iter);HDassert(maxseq >0);HDassert(maxelem >0);HDassert(nseq);HDassert(nelem);HDassert(off);HDassert(len);/* Choose the minimum number of bytes to sequence through */H5_CHECK_OVERFLOW(iter->elmt_left, hsize_t,size_t);
start_io_left = io_left = (size_t)MIN(iter->elmt_left, maxelem);/* Get the dataspace dimensions */if((ndims =H5S_get_simple_extent_dims(space, dims, NULL)) <0)HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL,"unable to retrieve data space dimensions")/* Walk through the points in the selection, starting at the current *//* location in the iterator */
node = iter->u.pnt.curr;
curr_seq =0;while(NULL != node) {/* Compute the offset of each selected point in the buffer */for(i = ndims -1, acc = iter->elmt_size, loc =0; i >=0; i--) {
loc += (node->pnt[i] + space->select.offset[i]) * acc;
acc *= dims[i];}/* end for *//* Check if this is a later point in the selection */if(curr_seq>0) {/* If a sorted sequence is requested, make certain we don't go backwards in the offset */if((flags&H5S_GET_SEQ_LIST_SORTED) && loc<off[curr_seq-1])break;/* Check if this point extends the previous sequence *//* (Unlikely, but possible) */if(loc==(off[curr_seq-1]+len[curr_seq-1])) {/* Extend the previous sequence */
len[curr_seq-1]+=iter->elmt_size;}/* end if */else{/* Add a new sequence */
off[curr_seq]=loc;
len[curr_seq]=iter->elmt_size;/* Increment sequence count */
curr_seq++;}/* end else */}/* end if */else{/* Add a new sequence */
off[curr_seq]=loc;
len[curr_seq]=iter->elmt_size;/* Increment sequence count */
curr_seq++;}/* end else *//* Decrement number of elements left to process */
io_left--;/* Move the iterator */
iter->u.pnt.curr=node->next;
iter->elmt_left--;/* Check if we're finished with all sequences */if(curr_seq==maxseq)break;/* Check if we're finished with all the elements available */if(io_left==0)break;/* Advance to the next point */
node=node->next;}/* end while *//* Set the number of sequences generated */*nseq=curr_seq;/* Set the number of elements used */*nelem=start_io_left-io_left;
done:FUNC_LEAVE_NOAPI(ret_value)}/* end H5S_point_get_seq_list() */
