path: root/src/H5Spublic.h

/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */

/*
 * This file contains public declarations for the H5S module.
 */
#ifndef _H5Spublic_H
#define _H5Spublic_H

/* Public headers needed by this file */
#include "H5public.h"
#include "H5Ipublic.h"

/* Define atomic datatypes */
#define H5S_ALL       (hid_t)0
#define H5S_UNLIMITED HSIZE_UNDEF

/* Define user-level maximum number of dimensions */
#define H5S_MAX_RANK 32

/* Flags for selection iterators */
#define H5S_SEL_ITER_GET_SEQ_LIST_SORTED                                                                     \
    0x0001 /* Retrieve elements from iterator                                                                \
            * in increasing offset order, for                                                                \
            * each call to retrieve sequences.                                                               \
            * Currently, this only applies to                                                                \
            * point selections, as hyperslab                                                                 \
            * selections are always returned                                                                 \
            * in increasing offset order.                                                                    \
            *                                                                                                \
            * Note that the order is only                                                                    \
            * increasing for each call to                                                                    \
            * get_seq_list, the next set of                                                                  \
            * sequences could start with an                                                                  \
            * earlier offset than the previous                                                               \
            * one.                                                                                           \
            */
#define H5S_SEL_ITER_SHARE_WITH_DATASPACE                                                                    \
    0x0002 /* Don't copy the dataspace                                                                       \
            * selection when creating the                                                                    \
            * selection iterator.                                                                            \
            *                                                                                                \
            * This can improve performance                                                                   \
            * of creating the iterator, but                                                                  \
            * the dataspace _MUST_NOT_ be                                                                    \
            * modified or closed until the                                                                   \
            * selection iterator is closed                                                                   \
            * or the iterator's behavior                                                                     \
            * will be undefined.                                                                             \
            */

/* Different types of dataspaces */
typedef enum H5S_class_t {
    H5S_NO_CLASS = -1, /*error                                      */
    H5S_SCALAR   = 0,  /*scalar variable                            */
    H5S_SIMPLE   = 1,  /*simple dataspace                           */
    H5S_NULL     = 2   /*null dataspace                             */
} H5S_class_t;

/* Different ways of combining selections */
typedef enum H5S_seloper_t {
    H5S_SELECT_NOOP = -1, /* error                                     */
    H5S_SELECT_SET  = 0,  /* Select "set" operation 		     */
    H5S_SELECT_OR,        /* Binary "or" operation for hyperslabs
                           * (add new selection to existing selection)
                           * Original region:  AAAAAAAAAA
                           * New region:             BBBBBBBBBB
                           * A or B:           CCCCCCCCCCCCCCCC
                           */
    H5S_SELECT_AND,       /* Binary "and" operation for hyperslabs
                           * (only leave overlapped regions in selection)
                           * Original region:  AAAAAAAAAA
                           * New region:             BBBBBBBBBB
                           * A and B:                CCCC
                           */
    H5S_SELECT_XOR,       /* Binary "xor" operation for hyperslabs
                           * (only leave non-overlapped regions in selection)
                           * Original region:  AAAAAAAAAA
                           * New region:             BBBBBBBBBB
                           * A xor B:          CCCCCC    CCCCCC
                           */
    H5S_SELECT_NOTB,      /* Binary "not" operation for hyperslabs
                           * (only leave non-overlapped regions in original selection)
                           * Original region:  AAAAAAAAAA
                           * New region:             BBBBBBBBBB
                           * A not B:          CCCCCC
                           */
    H5S_SELECT_NOTA,      /* Binary "not" operation for hyperslabs
                           * (only leave non-overlapped regions in new selection)
                           * Original region:  AAAAAAAAAA
                           * New region:             BBBBBBBBBB
                           * B not A:                    CCCCCC
                           */
    H5S_SELECT_APPEND,    /* Append elements to end of point selection */
    H5S_SELECT_PREPEND,   /* Prepend elements to beginning of point selection */
    H5S_SELECT_INVALID    /* Invalid upper bound on selection operations */
} H5S_seloper_t;

/* Enumerated type for the type of selection */
typedef enum {
    H5S_SEL_ERROR      = -1, /* Error			*/
    H5S_SEL_NONE       = 0,  /* Nothing selected 		*/
    H5S_SEL_POINTS     = 1,  /* Points / elements selected	*/
    H5S_SEL_HYPERSLABS = 2,  /* Hyperslab selected           */
    H5S_SEL_ALL        = 3,  /* Entire extent selected	*/
    H5S_SEL_N                /*THIS MUST BE LAST		*/
} H5S_sel_type;

#ifdef __cplusplus
extern "C" {
#endif

/* Operations on dataspaces and dataspace selections */

/**
 * \ingroup H5S
 *
 * \brief Releases and terminates access to a dataspace
 *
 * \space_id
 *
 * \return \herr_t
 *
 * \details H5Sclose() releases a dataspace. Further access through the
 *          dataspace identifier is illegal. Failure to release a dataspace with this
 *          call will result in resource leaks.
 *
 * \version 1.4.0 Fortran subroutine introduced in this release.
 * \since 1.0.0
 *
 */
H5_DLL herr_t H5Sclose(hid_t space_id);
/**
 * \ingroup H5S
 *
 * \brief Creates a new dataspace of a specified type
 *
 * \param[in] type   Type of dataspace to be created
 *
 * \return \hid_t{dataspace}
 *
 * \details H5Screate() creates a new dataspace of a particular type. Currently
 *          supported types are #H5S_SCALAR, #H5S_SIMPLE, and #H5S_NULL.
 *
 *          Further dataspace types may be added later.
 *
 *          A scalar dataspace, #H5S_SCALAR, has a single element, though that
 *          element may be of a complex datatype, such as a compound or array
 *          datatype. By convention, the rank of a scalar dataspace is always \p 0
 *          (zero); think of it geometrically as a single, dimensionless point,
 *          though that point can be complex.
 *
 *          A simple dataspace, #H5S_SIMPLE, consists of a regular array of elements.
 *
 *          A null dataspace, #H5S_NULL, has no data elements.
 *
 *          The dataspace identifier returned by this function can be released with
 *          H5Sclose() so that resource leaks will not occur.
 *
 * \version 1.4.0 Fortran subroutine introduced.
 * \since 1.0.0
 *
 */
H5_DLL hid_t H5Screate(H5S_class_t type);
/**
 * \ingroup H5S
 * \brief Creates a new simple dataspace and opens it for access
 *
 * \param[in] rank    Number of dimensions of dataspace
 * \param[in] dims    Array specifying the size of each dimension
 * \param[in] maxdims Array specifying the maximum size of each dimension
 *
 * \return \hid_t{dataspace}
 *
 * \details  H5Screate_simple() creates a new simple dataspace and opens it
 * for access, returning a dataspace identifier.
 *
 * \p rank is the number of dimensions used in the dataspace.
 *
 * \p dims is a one-dimensional array of size rank specifying the
 * size of each dimension of the dataset. \p maxdims is an array of the
 * same size specifying the upper limit on the size of each dimension.
 *
 * Any element of \p dims can be \p 0 (zero). Note that no data can
 * be written to a dataset if the size of any dimension of its current
 * dataspace is \p 0. This is sometimes a useful initial state for a dataset.
 *
 * \p maxdims may be the null pointer, in which case the upper limit is
 * the same as \p dims. Otherwise, no element of \p maxdims
 * should be smaller than the corresponding element of \p dims.
 *
 * If an element of \p maxdims is #H5S_UNLIMITED, the maximum size of the
 * corresponding dimension is unlimited.
 *
 * Any dataset with an unlimited dimension must also be chunked; see
 * H5Pset_chunk(). Similarly, a dataset must be chunked if \p dims does
 * not equal \p maxdims.
 *
 * The dataspace identifier returned from this function must be released with
 * H5Sclose() or resource leaks will occur.
 *
 * \note Once a dataspace has been created, specific regions or elements in
 *       the dataspace can be selected and selections can be removed, as well.
 *       For example, H5Sselect_hyperslab() selects a region in a dataspace and
 *       H5Sselect_elements() selects array elements in a dataspace. These
 *       functions are used for subsetting. H5Sselect_none() removes all
 *       selections from a dataspace and is used in Parallel HDF5 when a process
 *       does not have or need to write data.
 *
 * \version 1.4.0 Fortran subroutine introduced.
 *
 * \since 1.0.0
 *
 */
H5_DLL hid_t H5Screate_simple(int rank, const hsize_t dims[], const hsize_t maxdims[]);
/*--------------------------------------------------------------------------*/
/**\ingroup H5S
 *
 * \brief Determines the number of elements in a dataspace selection
 *
 * \space_id{spaceid}
 *
 * \return Returns the number of elements in the selection if successful;
 *         otherwise returns a negative value.
 *
 * \details H5Sget_select_npoints() determines the number of elements in
 *          the current selection of a dataspace. It works with any
 *          selection type, and is the correct way to retrieve the number
 *          of elements in a selection.
 *
 * \version 1.4.0 Fortran subroutine introduced in this release.
 * \since 1.0.0
 *
 */
H5_DLL hssize_t H5Sget_select_npoints(hid_t spaceid);
/*-------------------------------------------------------------------------*/
/**\ingroup H5S
 *
 * \brief Retrieves dataspace dimension size and maximum size
 *
 * \space_id
 * \param[out] dims Pointer to array to store the size of each dimension
 * \param[out] maxdims Pointer to array to store the maximum size of each
 *                     dimension
 *
 * \return Returns the number of dimensions in the dataspace if successful;
 *         otherwise returns a negative value.
 *
 * \details H5Sget_simple_extent_dims() returns the size and maximum sizes
 *          of each dimension of a dataspace \p space_id through the \p dims
 *          and \p maxdims parameters.
 *
 *          Either or both of \p dims and \p maxdims may be NULL.
 *
 *          If a value in the returned array \p maxdims is #H5S_UNLIMITED (-1),
 *          the maximum size of that dimension is unlimited.
 *
 * \version 1.4.0 Fortran subroutine introduced.
 * \since 1.0.0
 *
 */
H5_DLL int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[], hsize_t maxdims[]);
/*-------------------------------------------------------------------------*/
/**\ingroup H5S
 *
 * \brief Determines the dimensionality of a dataspace
 *
 * \space_id
 *
 * \return Returns the number of dimensions in the dataspace if successful;
 *         otherwise returns a negative value.
 *
 * \details H5Sget_simple_extent_ndims() determines the dimensionality (or
 *          rank) of a dataspace.
 *
 * \version 1.4.0 Fortran subroutine introduced.
 * \since 1.0.0
 *
 */
H5_DLL int H5Sget_simple_extent_ndims(hid_t space_id);
/*--------------------------------------------------------------------------*/
/**\ingroup H5S
 *
 * \brief Selects a hyperslab region to add to the current selected region
 *
 * \space_id
 * \param[in] op     Operation to perform on current selection
 * \param[in] start  Offset of start of hyperslab
 * \param[in] stride Hyperslab stride
 * \param[in] count  Number of blocks included in hyperslab
 * \param[in] block  Size of block in hyperslab
 *
 * \return \herr_t
 *
 * \details H5Sselect_hyperslab() selects a hyperslab region to add to the
 *          current selected region for the dataspace specified by
 *          \p space_id.
 *
 *          The \p start, \p stride, \p count, and \p block arrays must be the
 *          same size as the rank of the dataspace. For example, if the
 *          dataspace is 4-dimensional, each of these parameters must be a
 *          1-dimensional array of size 4.
 *
 *          The selection operator \p op determines how the new selection
 *          is to be combined with the already existing selection for the
 *          dataspace. The following operators are supported:
 *
 *          <table>
 *           <tr>
 *             <td>#H5S_SELECT_SET</td>
 *             <td>Replaces the existing selection with the
 *              parameters from this call. Overlapping blocks
 *             are not supported with this operator.</td>
 *           </tr>
 *           <tr>
 *              <td>#H5S_SELECT_OR</td>
 *              <td>Adds the new selection to the existing selection.
 *              (Binary OR)</td>
 *           </tr>
 *           <tr>
 *             <td>#H5S_SELECT_AND</td>
 *             <td>Retains only the overlapping portions of the
 *                new selection and the existing selection.
 *               (Binary AND)</td>
 *          </tr>
 *          <tr>
 *             <td>#H5S_SELECT_XOR</td>
 *             <td>Retains only the elements that are members of
 *                  the new selection or the existing selection,
 *                  excluding elements that are members of both
 *                  selections. (Binary exclusive-OR, XOR)
 *                 </td>
 *          </tr>
 *          <tr>
 *             <td>#H5S_SELECT_NOTB</td>
 *             <td>Retains only elements of the existing selection
 *               that are not in the new selection.</td>
 *          </tr>
 *          <tr>
 *             <td>#H5S_SELECT_NOTA</td>
 *             <td>Retains only elements of the new selection that
 *              are not in the existing selection.</td>
 *          </tr>
 *          </table>
 *
 *          The \p start array specifies the offset of the starting element
 *          of the specified hyperslab.
 *
 *          The \p stride array chooses array locations from the dataspace with
 *          each value in the \p stride array determining how many elements to
 *          move in each dimension. Setting a value in the \p stride array to
 *          \p 1 moves to each element in that dimension of the dataspace;
 *          setting a value of \p 2 in allocation in the \p stride array moves
 *          to every other element in that dimension of the dataspace. In
 *          other words, the \p stride determines the number of elements to
 *          move from the \p start location in each dimension. Stride values
 *          of \p 0 are not allowed. If the \p stride parameter is NULL, a
 *          contiguous hyperslab is selected (as if each value in the \p stride
 *          array were set to \p 1).
 *
 *          The \p count array determines how many blocks to select from the
 *          dataspace, in each dimension.
 *
 *          The \p block array determines the size of the element block
 *          selected from the dataspace. If the \p block parameter is set to
 *          NULL, the block size defaults to a single element in each dimension
 *          (as if each value in the \p block array were set to \p 1).
 *
 *          For example, consider a 2-dimensional dataspace with hyperslab
 *          selection settings as follows: the \p start offset is specified as
 *          [1,1], \p stride is [4,4], \p count is [3,7], and \p block is [2,2].
 *          In C, these settings will specify a hyperslab consisting of 21
 *          2x2 blocks of array elements starting with location (1,1) with the
 *          selected blocks at locations (1,1), (5,1), (9,1), (1,5), (5,5), etc.;
 *          in Fortran, they will specify a hyperslab consisting of 21 2x2
 *          blocks of array elements starting with location (2,2) with the
 *          selected blocks at locations (2,2), (6,2), (10,2), (2,6), (6,6), etc.
 *
 *          Regions selected with this function call default to C order
 *          iteration when I/O is performed.
 *
 * \version 1.4.0 Fortran subroutine introduced in this release.
 * \since 1.0.0
 *
 */
H5_DLL herr_t      H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[],
                                       const hsize_t stride[], const hsize_t count[], const hsize_t block[]);
H5_DLL herr_t      H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[], const hsize_t max[]);
H5_DLL hid_t       H5Scopy(hid_t space_id);
H5_DLL herr_t      H5Sencode2(hid_t obj_id, void *buf, size_t *nalloc, hid_t fapl);
H5_DLL hid_t       H5Sdecode(const void *buf);
H5_DLL hssize_t    H5Sget_simple_extent_npoints(hid_t space_id);
H5_DLL htri_t      H5Sis_simple(hid_t space_id);
H5_DLL H5S_class_t H5Sget_simple_extent_type(hid_t space_id);
H5_DLL herr_t      H5Sset_extent_none(hid_t space_id);
H5_DLL herr_t      H5Sextent_copy(hid_t dst_id, hid_t src_id);
H5_DLL htri_t      H5Sextent_equal(hid_t sid1, hid_t sid2);

/* Operations on dataspace selections */
H5_DLL H5S_sel_type H5Sget_select_type(hid_t spaceid);
H5_DLL herr_t       H5Sselect_copy(hid_t dst_id, hid_t src_id);
H5_DLL htri_t       H5Sselect_valid(hid_t spaceid);
H5_DLL herr_t       H5Sselect_adjust(hid_t spaceid, const hssize_t *offset);
H5_DLL herr_t       H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[]);
H5_DLL htri_t       H5Sselect_shape_same(hid_t space1_id, hid_t space2_id);
H5_DLL htri_t       H5Sselect_intersect_block(hid_t space_id, const hsize_t *start, const hsize_t *end);
H5_DLL herr_t       H5Soffset_simple(hid_t space_id, const hssize_t *offset);
H5_DLL herr_t       H5Sselect_all(hid_t spaceid);
H5_DLL herr_t       H5Sselect_none(hid_t spaceid);
H5_DLL herr_t   H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord);
H5_DLL hssize_t H5Sget_select_elem_npoints(hid_t spaceid);
H5_DLL herr_t   H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint, hsize_t numpoints,
                                             hsize_t buf[/*numpoints*/]);
H5_DLL hid_t    H5Scombine_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[],
                                     const hsize_t _stride[], const hsize_t count[], const hsize_t _block[]);
H5_DLL herr_t   H5Smodify_select(hid_t space1_id, H5S_seloper_t op, hid_t space2_id);
H5_DLL hid_t    H5Scombine_select(hid_t space1_id, H5S_seloper_t op, hid_t space2_id);
H5_DLL htri_t   H5Sis_regular_hyperslab(hid_t spaceid);
H5_DLL htri_t   H5Sget_regular_hyperslab(hid_t spaceid, hsize_t start[], hsize_t stride[], hsize_t count[],
                                         hsize_t block[]);
H5_DLL hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid);
H5_DLL herr_t   H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, hsize_t numblocks,
                                              hsize_t buf[/*numblocks*/]);
H5_DLL hid_t    H5Sselect_project_intersection(hid_t src_space_id, hid_t dst_space_id,
                                               hid_t src_intersect_space_id);

/* Operations on dataspace selection iterators */
H5_DLL hid_t  H5Ssel_iter_create(hid_t spaceid, size_t elmt_size, unsigned flags);
H5_DLL herr_t H5Ssel_iter_get_seq_list(hid_t sel_iter_id, size_t maxseq, size_t maxbytes, size_t *nseq,
                                       size_t *nbytes, hsize_t *off, size_t *len);
H5_DLL herr_t H5Ssel_iter_reset(hid_t sel_iter_id, hid_t space_id);
H5_DLL herr_t H5Ssel_iter_close(hid_t sel_iter_id);

/* Symbols defined for compatibility with previous versions of the HDF5 API.
 *
 * Use of these symbols is deprecated.
 */
#ifndef H5_NO_DEPRECATED_SYMBOLS
/* Function prototypes */
H5_DLL herr_t H5Sencode1(hid_t obj_id, void *buf, size_t *nalloc);

#endif /* H5_NO_DEPRECATED_SYMBOLS */

#ifdef __cplusplus
}
#endif
#endif /* _H5Spublic_H */