1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Module Info: This module contains the functionality for variable-length
* datatypes in the H5T interface.
*/
#define H5T_PACKAGE /*suppress error about including H5Tpkg */
/* Pablo information */
/* (Put before include files to avoid problems with inline functions) */
#define PABLO_MASK H5Tvlen_mask
#include "H5private.h" /* Generic Functions */
#include "H5Dprivate.h" /* Dataset functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5FLprivate.h" /* Free Lists */
#include "H5HGprivate.h" /* Global Heaps */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h" /* Property lists */
#include "H5Tpkg.h" /* Datatypes */
/* Interface initialization */
static int interface_initialize_g = 0;
#define INTERFACE_INIT H5T_init_vlen_interface
static herr_t H5T_init_vlen_interface(void);
/* Declare extern the free list for H5T_t's */
H5FL_EXTERN(H5T_t);
/* Local functions */
static herr_t H5T_vlen_reclaim_recurse(void *elem, const H5T_t *dt, H5MM_free_t free_func, void *free_info);
/*--------------------------------------------------------------------------
NAME
H5T_init_vlen_interface -- Initialize interface-specific information
USAGE
herr_t H5T_init_vlen_interface()
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
Initializes any interface-specific data or routines. (Just calls
H5T_init_iterface currently).
--------------------------------------------------------------------------*/
static herr_t
H5T_init_vlen_interface(void)
{
FUNC_ENTER_NOINIT(H5T_init_vlen_interface)
FUNC_LEAVE_NOAPI(H5T_init())
} /* H5T_init_vlen_interface() */
/*-------------------------------------------------------------------------
* Function: H5Tvlen_create
*
* Purpose: Create a new variable-length datatype based on the specified
* BASE_TYPE.
*
* Return: Success: ID of new VL datatype
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* Thursday, May 20, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
hid_t
H5Tvlen_create(hid_t base_id)
{
H5T_t *base = NULL; /*base datatype */
H5T_t *dt = NULL; /*new datatype */
hid_t ret_value; /*return value */
FUNC_ENTER_API(H5Tvlen_create, FAIL)
H5TRACE1("i","i",base_id);
/* Check args */
if (NULL==(base=H5I_object_verify(base_id,H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an valid base datatype")
/* Create up VL datatype */
if ((dt=H5T_vlen_create(base))==NULL)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "invalid VL location")
/* Atomize the type */
if ((ret_value=H5I_register(H5I_DATATYPE, dt))<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register datatype")
done:
FUNC_LEAVE_API(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5T_vlen_create
*
* Purpose: Create a new variable-length datatype based on the specified
* BASE_TYPE.
*
* Return: Success: new VL datatype
*
* Failure: NULL
*
* Programmer: Quincey Koziol
* Tuesday, November 20, 2001
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
H5T_t *
H5T_vlen_create(const H5T_t *base)
{
H5T_t *dt = NULL; /*new VL datatype */
H5T_t *ret_value; /*return value */
FUNC_ENTER_NOINIT(H5T_vlen_create)
/* Check args */
assert(base);
/* Build new type */
if (NULL==(dt = H5FL_CALLOC(H5T_t)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, NULL, "memory allocation failed")
dt->ent.header = HADDR_UNDEF;
dt->type = H5T_VLEN;
/*
* Force conversions (i.e. memory to memory conversions should duplicate
* data, not point to the same VL sequences)
*/
dt->force_conv = TRUE;
dt->parent = H5T_copy(base, H5T_COPY_ALL);
/* This is a sequence, not a string */
dt->u.vlen.type = H5T_VLEN_SEQUENCE;
/* Set up VL information */
if (H5T_set_loc(dt, NULL, H5T_LOC_MEMORY)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "invalid datatype location")
/* Set return value */
ret_value=dt;
done:
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5T_vlen_set_loc
*
* Purpose: Sets the location of a VL datatype to be either on disk or in memory
*
* Return:
* One of two values on success:
* TRUE - If the location of any vlen types changed
* FALSE - If the location of any vlen types is the same
* <0 is returned on failure
*
* Programmer: Quincey Koziol
* Friday, June 4, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
htri_t
H5T_vlen_set_loc(H5T_t *dt, H5F_t *f, H5T_loc_t loc)
{
htri_t ret_value = 0; /* Indicate that success, but no location change */
FUNC_ENTER_NOINIT(H5T_vlen_set_loc)
/* check parameters */
assert(dt);
assert(loc>H5T_LOC_BADLOC && loc<H5T_LOC_MAXLOC);
/* Only change the location if it's different */
if(loc!=dt->u.vlen.loc) {
/* Indicate that the location changed */
ret_value=TRUE;
switch(loc) {
case H5T_LOC_MEMORY: /* Memory based VL datatype */
assert(f==NULL);
/* Mark this type as being stored in memory */
dt->u.vlen.loc=H5T_LOC_MEMORY;
if(dt->u.vlen.type==H5T_VLEN_SEQUENCE) {
/* size in memory, disk size is different */
dt->size = sizeof(hvl_t);
/* Set up the function pointers to access the VL sequence in memory */
dt->u.vlen.getlen=H5T_vlen_seq_mem_getlen;
dt->u.vlen.read=H5T_vlen_seq_mem_read;
dt->u.vlen.write=H5T_vlen_seq_mem_write;
} else if(dt->u.vlen.type==H5T_VLEN_STRING) {
/* size in memory, disk size is different */
dt->size = sizeof(char *);
/* Set up the function pointers to access the VL string in memory */
dt->u.vlen.getlen=H5T_vlen_str_mem_getlen;
dt->u.vlen.read=H5T_vlen_str_mem_read;
dt->u.vlen.write=H5T_vlen_str_mem_write;
} else {
assert(0 && "Invalid VL type");
}
/* Reset file ID (since this VL is in memory) */
dt->u.vlen.f=NULL;
break;
case H5T_LOC_DISK: /* Disk based VL datatype */
assert(f);
/* Mark this type as being stored on disk */
dt->u.vlen.loc=H5T_LOC_DISK;
/*
* Size of element on disk is 4 bytes for the length, plus the size
* of an address in this file, plus 4 bytes for the size of a heap
* ID. Memory size is different
*/
dt->size = 4 + H5F_SIZEOF_ADDR(f) + 4;
/* Set up the function pointers to access the VL information on disk */
/* VL sequences and VL strings are stored identically on disk, so use the same functions */
dt->u.vlen.getlen=H5T_vlen_disk_getlen;
dt->u.vlen.read=H5T_vlen_disk_read;
dt->u.vlen.write=H5T_vlen_disk_write;
/* Set file ID (since this VL is on disk) */
dt->u.vlen.f=f;
break;
default:
HGOTO_ERROR (H5E_DATATYPE, H5E_BADRANGE, FAIL, "invalid VL datatype location")
} /* end switch */
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_set_loc() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_seq_mem_getlen
*
* Purpose: Retrieves the length of a memory based VL element.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
hssize_t
H5T_vlen_seq_mem_getlen(H5F_t UNUSED *f, void *vl_addr)
{
hvl_t *vl=(hvl_t *)vl_addr; /* Pointer to the user's hvl_t information */
hssize_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_seq_mem_getlen, FAIL)
/* check parameters */
assert(vl);
/* Set return value */
ret_value=(hssize_t)vl->len;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_seq_mem_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_seq_mem_read
*
* Purpose: "Reads" the memory based VL sequence into a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
herr_t
H5T_vlen_seq_mem_read(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, void *vl_addr, void *buf, size_t len)
{
hvl_t *vl=(hvl_t *)vl_addr; /* Pointer to the user's hvl_t information */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_seq_mem_read, FAIL)
/* check parameters */
assert(vl && vl->p);
assert(buf);
HDmemcpy(buf,vl->p,len);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_seq_mem_read() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_seq_mem_write
*
* Purpose: "Writes" the memory based VL sequence from a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
herr_t
H5T_vlen_seq_mem_write(H5F_t UNUSED *f, hid_t dxpl_id, void *vl_addr, void *buf, void UNUSED *bg_addr, hsize_t seq_len, hsize_t base_size)
{
H5MM_allocate_t alloc_func; /* Vlen allocation function */
void *alloc_info; /* Vlen allocation information */
hvl_t vl; /* Temporary hvl_t to use during operation */
size_t len;
H5P_genplist_t *plist; /* Property list */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_seq_mem_write, FAIL)
/* check parameters */
assert(vl_addr);
assert(buf);
if(seq_len!=0) {
H5_ASSIGN_OVERFLOW(len,(seq_len*base_size),hsize_t,size_t);
/* Use the user's memory allocation routine is one is defined */
/* Get the allocation function & info */
if(NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list")
if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_NAME,&alloc_func)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_INFO_NAME,&alloc_info)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
if(alloc_func!=NULL) {
if(NULL==(vl.p=(alloc_func)(len,alloc_info)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for VL data")
} /* end if */
else { /* Default to system malloc */
if(NULL==(vl.p=H5MM_malloc(len)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for VL data")
} /* end else */
/* Copy the data into the newly allocated buffer */
HDmemcpy(vl.p,buf,len);
} /* end if */
else
vl.p=NULL;
/* Set the sequence length */
H5_ASSIGN_OVERFLOW(vl.len,seq_len,hsize_t,size_t);
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
HDmemcpy(vl_addr,&vl,sizeof(hvl_t));
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_seq_mem_write() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_str_mem_getlen
*
* Purpose: Retrieves the length of a memory based VL string.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
hssize_t
H5T_vlen_str_mem_getlen(H5F_t UNUSED *f, void *vl_addr)
{
char *s=*(char **)vl_addr; /* Pointer to the user's hvl_t information */
hssize_t ret_value; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_str_mem_getlen, FAIL)
/* Set return value */
if(s)
ret_value=(hssize_t)HDstrlen(s);
else
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "null pointer")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_str_mem_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_str_mem_read
*
* Purpose: "Reads" the memory based VL string into a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
herr_t
H5T_vlen_str_mem_read(H5F_t UNUSED *f, hid_t UNUSED dxpl_id, void *vl_addr, void *buf, size_t len)
{
char *s=*(char **)vl_addr; /* Pointer to the user's hvl_t information */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_str_mem_read, FAIL)
/* check parameters */
assert(s);
assert(buf);
if(len>0)
HDmemcpy(buf,s,len);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_str_mem_read() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_str_mem_write
*
* Purpose: "Writes" the memory based VL string from a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
herr_t
H5T_vlen_str_mem_write(H5F_t UNUSED *f, hid_t dxpl_id, void *vl_addr, void *buf, void UNUSED *bg_addr, hsize_t seq_len, hsize_t base_size)
{
H5MM_allocate_t alloc_func; /* Vlen allocation function */
void *alloc_info; /* Vlen allocation information */
char *t; /* Pointer to temporary buffer allocated */
size_t len; /* Maximum length of the string to copy */
H5P_genplist_t *plist; /* Property list */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_str_mem_write, FAIL)
/* check parameters */
assert(buf);
H5_CHECK_OVERFLOW(((seq_len+1)*base_size),hsize_t,size_t);
/* Use the user's memory allocation routine if one is defined */
/* Get the allocation function & info */
if(NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list")
if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_NAME,&alloc_func)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
if (H5P_get(plist,H5D_XFER_VLEN_ALLOC_INFO_NAME,&alloc_info)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
if(alloc_func!=NULL) {
if(NULL==(t=(alloc_func)((size_t)((seq_len+1)*base_size),alloc_info)))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for VL data")
} /* end if */
else { /* Default to system malloc */
if(NULL==(t=H5MM_malloc((size_t)((seq_len+1)*base_size))))
HGOTO_ERROR(H5E_RESOURCE, H5E_NOSPACE, FAIL, "memory allocation failed for VL data")
} /* end else */
H5_ASSIGN_OVERFLOW(len,(seq_len*base_size),hsize_t,size_t);
HDmemcpy(t,buf,len);
t[len]='\0';
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
HDmemcpy(vl_addr,&t,sizeof(char *));
done:
FUNC_LEAVE_NOAPI(ret_value) /*lint !e429 The pointer in 't' has been copied */
} /* end H5T_vlen_str_mem_write() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_disk_getlen
*
* Purpose: Retrieves the length of a disk based VL element.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
hssize_t
H5T_vlen_disk_getlen(H5F_t UNUSED *f, void *vl_addr)
{
uint8_t *vl=(uint8_t *)vl_addr; /* Pointer to the disk VL information */
hssize_t ret_value; /*return value */
FUNC_ENTER_NOAPI(H5T_vlen_disk_getlen, FAIL)
/* check parameters */
assert(vl);
UINT32DECODE(vl, ret_value);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_disk_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_disk_read
*
* Purpose: Reads the disk based VL element into a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
/* ARGSUSED */
herr_t
H5T_vlen_disk_read(H5F_t *f, hid_t dxpl_id, void *vl_addr, void *buf, size_t UNUSED len)
{
uint8_t *vl=(uint8_t *)vl_addr; /* Pointer to the user's hvl_t information */
H5HG_t hobjid;
uint32_t seq_len;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_disk_read, FAIL)
/* check parameters */
assert(vl);
assert(buf);
assert(f);
/* Get the length of the sequence */
UINT32DECODE(vl, seq_len); /* Not used */
/* Check if this sequence actually has any data */
if(seq_len!=0) {
/* Get the heap information */
H5F_addr_decode(f,(const uint8_t **)&vl,&(hobjid.addr));
INT32DECODE(vl,hobjid.idx);
/* Read the VL information from disk */
if(H5HG_read(f,dxpl_id, &hobjid,buf)==NULL)
HGOTO_ERROR(H5E_DATATYPE, H5E_READERROR, FAIL, "Unable to read VL information")
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_disk_read() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_disk_write
*
* Purpose: Writes the disk based VL element from a buffer
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Quincey Koziol
* Wednesday, June 2, 1999
*
* Modifications:
*
* Raymond Lu
* Thursday, June 26, 2002
* Free heap objects storing old data.
*
*-------------------------------------------------------------------------
*/
herr_t
H5T_vlen_disk_write(H5F_t *f, hid_t dxpl_id, void *vl_addr, void *buf, void *bg_addr, hsize_t seq_len, hsize_t base_size)
{
uint8_t *vl=(uint8_t *)vl_addr; /*Pointer to the user's hvl_t information*/
uint8_t *bg=(uint8_t *)bg_addr; /*Pointer to the old data hvl_t */
H5HG_t hobjid;
H5HG_t bg_hobjid;
size_t len;
hsize_t bg_seq_len=0;
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5T_vlen_disk_write, FAIL)
/* check parameters */
assert(vl);
assert(buf);
assert(f);
/* Get the length of the sequence and heap object ID from background data.
* Free heap object for old data. */
if(bg!=NULL) {
HDmemset(&bg_hobjid,0,sizeof(H5HG_t));
UINT32DECODE(bg, bg_seq_len);
/* Free heap object for old data */
if(bg_seq_len>0) {
/* Get heap information */
H5F_addr_decode(f, (const uint8_t **)&bg, &(bg_hobjid.addr));
INT32DECODE(bg, bg_hobjid.idx);
/* Free heap object */
if(H5HG_remove(f, dxpl_id, &bg_hobjid)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_WRITEERROR, FAIL, "Unable to remove heap object")
} /* end if */
} /* end if */
/* Set the length of the sequence */
H5_CHECK_OVERFLOW(seq_len,hsize_t,size_t);
UINT32ENCODE(vl, seq_len);
/* Check if this sequence actually has any data */
if(seq_len!=0) {
/* Write the VL information to disk (allocates space also) */
H5_ASSIGN_OVERFLOW(len,(seq_len*base_size),hsize_t,size_t);
if(H5HG_insert(f,dxpl_id, len,buf,&hobjid)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_WRITEERROR, FAIL, "Unable to write VL information")
} /* end if */
else
HDmemset(&hobjid,0,sizeof(H5HG_t));
/* Get the heap information */
H5F_addr_encode(f,&vl,hobjid.addr);
INT32ENCODE(vl,hobjid.idx);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_disk_write() */
/*--------------------------------------------------------------------------
NAME
H5T_vlen_reclaim_recurse
PURPOSE
Internal recursive routine to free VL datatypes
USAGE
herr_t H5T_vlen_reclaim(elem,dt)
void *elem; IN/OUT: Pointer to the dataset element
H5T_t *dt; IN: Datatype of dataset element
RETURNS
SUCCEED/FAIL
DESCRIPTION
Frees any dynamic memory used by VL datatypes in the current dataset
element. Performs a recursive depth-first traversal of all compound
datatypes to free all VL datatype information allocated by any field.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
EXAMPLES
REVISION LOG
--------------------------------------------------------------------------*/
static herr_t
H5T_vlen_reclaim_recurse(void *elem, const H5T_t *dt, H5MM_free_t free_func, void *free_info)
{
int i; /* local index variable */
size_t j; /* local index variable */
herr_t ret_value = SUCCEED;
FUNC_ENTER_NOINIT(H5T_vlen_reclaim_recurse)
assert(elem);
assert(dt);
/* Check the datatype of this element */
switch(dt->type) {
case H5T_ARRAY:
/* Recurse on each element, if the array's base type is array, VL, enum or compound */
if(H5T_IS_COMPLEX(dt->parent->type)) {
void *off; /* offset of field */
/* Calculate the offset member and recurse on it */
for(j=0; j<dt->u.array.nelem; j++) {
off=((uint8_t *)elem)+j*(dt->parent->size);
if(H5T_vlen_reclaim_recurse(off,dt->parent,free_func,free_info)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "Unable to free array element")
} /* end for */
} /* end if */
break;
case H5T_COMPOUND:
/* Check each field and recurse on VL, compound, enum or array ones */
for (i=0; i<dt->u.compnd.nmembs; i++) {
/* Recurse if it's VL, compound, enum or array */
if(H5T_IS_COMPLEX(dt->u.compnd.memb[i].type->type)) {
void *off; /* offset of field */
/* Calculate the offset member and recurse on it */
off=((uint8_t *)elem)+dt->u.compnd.memb[i].offset;
if(H5T_vlen_reclaim_recurse(off,dt->u.compnd.memb[i].type,free_func,free_info)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "Unable to free compound field")
} /* end if */
} /* end for */
break;
case H5T_VLEN:
/* Recurse on the VL information if it's VL, compound, enum or array, then free VL sequence */
if(dt->u.vlen.type==H5T_VLEN_SEQUENCE) {
hvl_t *vl=(hvl_t *)elem; /* Temp. ptr to the vl info */
/* Check if there is anything actually in this sequence */
if(vl->len!=0) {
/* Recurse if it's VL, array, enum or compound */
if(H5T_IS_COMPLEX(dt->parent->type)) {
void *off; /* offset of field */
/* Calculate the offset of each array element and recurse on it */
while(vl->len>0) {
off=((uint8_t *)vl->p)+(vl->len-1)*dt->parent->size;
if(H5T_vlen_reclaim_recurse(off,dt->parent,free_func,free_info)<0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "Unable to free VL element")
vl->len--;
} /* end while */
} /* end if */
/* Free the VL sequence */
if(free_func!=NULL)
(*free_func)(vl->p,free_info);
else
H5MM_xfree(vl->p);
} /* end if */
} else if(dt->u.vlen.type==H5T_VLEN_STRING) {
/* Free the VL string */
if(free_func!=NULL)
(*free_func)(*(char **)elem,free_info);
else
H5MM_xfree(*(char **)elem);
} else {
assert(0 && "Invalid VL type");
} /* end else */
break;
default:
break;
} /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_reclaim_recurse() */
/*--------------------------------------------------------------------------
NAME
H5T_vlen_reclaim
PURPOSE
Default method to reclaim any VL data for a buffer element
USAGE
herr_t H5T_vlen_reclaim(elem,type_id,ndim,point,op_data)
void *elem; IN/OUT: Pointer to the dataset element
hid_t type_id; IN: Datatype of dataset element
hsize_t ndim; IN: Number of dimensions in dataspace
hssize_t *point; IN: Coordinate location of element in dataspace
void *op_data IN: Operator data
RETURNS
SUCCEED/FAIL
DESCRIPTION
Frees any dynamic memory used by VL datatypes in the current dataset
element. Recursively descends compound datatypes to free all VL datatype
information allocated by any field.
GLOBAL VARIABLES
COMMENTS, BUGS, ASSUMPTIONS
EXAMPLES
REVISION LOG
--------------------------------------------------------------------------*/
/* ARGSUSED */
herr_t
H5T_vlen_reclaim(void *elem, hid_t type_id, hsize_t UNUSED ndim, hssize_t UNUSED *point, void *op_data)
{
hid_t plist_id = *(hid_t *)op_data; /* Dataset transfer plist from iterator */
H5MM_free_t free_func; /* Vlen free function */
void *free_info=NULL; /* Vlen free information */
H5T_t *dt = NULL;
H5P_genplist_t *plist; /* Property list */
herr_t ret_value;
FUNC_ENTER_NOAPI(H5T_vlen_reclaim, FAIL)
assert(elem);
assert(H5I_DATATYPE == H5I_get_type(type_id));
/* Check args */
if (NULL==(dt=H5I_object_verify(type_id,H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
/* Get the free func & information */
if(NULL == (plist = H5P_object_verify(plist_id,H5P_DATASET_XFER)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset transfer property list")
if (H5P_get(plist,H5D_XFER_VLEN_FREE_NAME,&free_func)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
if (H5P_get(plist,H5D_XFER_VLEN_FREE_INFO_NAME,&free_info)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "unable to get value")
/* Pull the free function and free info pointer out of the op_data and call the recurse datatype free function */
ret_value=H5T_vlen_reclaim_recurse(elem,dt,free_func,free_info);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T_vlen_reclaim() */
|