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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the COPYING file, which can be found at the root of the source code *
* distribution tree, or in https://www.hdfgroup.org/licenses. *
* If you do not have access to either file, you may request a copy from *
* help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Module Info: This module contains the functionality for variable-length
* datatypes in the H5T interface.
*/
/****************/
/* Module Setup */
/****************/
#include "H5Tmodule.h" /* This source code file is part of the H5T module */
#define H5F_FRIEND /*suppress error about including H5Fpkg */
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5CXprivate.h" /* API Contexts */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fpkg.h" /* File */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Tpkg.h" /* Datatypes */
#include "H5VLprivate.h" /* Virtual Object Layer */
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
/********************/
/* Package Typedefs */
/********************/
/********************/
/* Local Prototypes */
/********************/
/* Memory-based VL sequence callbacks */
static herr_t H5T__vlen_mem_seq_getlen(H5VL_object_t *file, const void *_vl, size_t *len);
static void *H5T__vlen_mem_seq_getptr(void *_vl);
static herr_t H5T__vlen_mem_seq_isnull(const H5VL_object_t *file, void *_vl, bool *isnull);
static herr_t H5T__vlen_mem_seq_setnull(H5VL_object_t *file, void *_vl, void *_bg);
static herr_t H5T__vlen_mem_seq_read(H5VL_object_t *file, void *_vl, void *_buf, size_t len);
static herr_t H5T__vlen_mem_seq_write(H5VL_object_t *file, const H5T_vlen_alloc_info_t *vl_alloc_info,
void *_vl, void *_buf, void *_bg, size_t seq_len, size_t base_size);
/* Memory-based VL string callbacks */
static herr_t H5T__vlen_mem_str_getlen(H5VL_object_t *file, const void *_vl, size_t *len);
static void *H5T__vlen_mem_str_getptr(void *_vl);
static herr_t H5T__vlen_mem_str_isnull(const H5VL_object_t *file, void *_vl, bool *isnull);
static herr_t H5T__vlen_mem_str_setnull(H5VL_object_t *file, void *_vl, void *_bg);
static herr_t H5T__vlen_mem_str_read(H5VL_object_t *file, void *_vl, void *_buf, size_t len);
static herr_t H5T__vlen_mem_str_write(H5VL_object_t *file, const H5T_vlen_alloc_info_t *vl_alloc_info,
void *_vl, void *_buf, void *_bg, size_t seq_len, size_t base_size);
/* Disk-based VL sequence (and string) callbacks */
static herr_t H5T__vlen_disk_getlen(H5VL_object_t *file, const void *_vl, size_t *len);
static herr_t H5T__vlen_disk_isnull(const H5VL_object_t *file, void *_vl, bool *isnull);
static herr_t H5T__vlen_disk_setnull(H5VL_object_t *file, void *_vl, void *_bg);
static herr_t H5T__vlen_disk_read(H5VL_object_t *file, void *_vl, void *_buf, size_t len);
static herr_t H5T__vlen_disk_write(H5VL_object_t *file, const H5T_vlen_alloc_info_t *vl_alloc_info, void *_vl,
void *_buf, void *_bg, size_t seq_len, size_t base_size);
static herr_t H5T__vlen_disk_delete(H5VL_object_t *file, void *_vl);
/*********************/
/* Public Variables */
/*********************/
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Class for VL sequences in memory */
static const H5T_vlen_class_t H5T_vlen_mem_seq_g = {
H5T__vlen_mem_seq_getlen, /* 'getlen' */
H5T__vlen_mem_seq_getptr, /* 'getptr' */
H5T__vlen_mem_seq_isnull, /* 'isnull' */
H5T__vlen_mem_seq_setnull, /* 'setnull' */
H5T__vlen_mem_seq_read, /* 'read' */
H5T__vlen_mem_seq_write, /* 'write' */
NULL /* 'delete' */
};
/* Class for VL strings in memory */
static const H5T_vlen_class_t H5T_vlen_mem_str_g = {
H5T__vlen_mem_str_getlen, /* 'getlen' */
H5T__vlen_mem_str_getptr, /* 'getptr' */
H5T__vlen_mem_str_isnull, /* 'isnull' */
H5T__vlen_mem_str_setnull, /* 'setnull' */
H5T__vlen_mem_str_read, /* 'read' */
H5T__vlen_mem_str_write, /* 'write' */
NULL /* 'delete' */
};
/* Class for both VL strings and sequences in file */
static const H5T_vlen_class_t H5T_vlen_disk_g = {
H5T__vlen_disk_getlen, /* 'getlen' */
NULL, /* 'getptr' */
H5T__vlen_disk_isnull, /* 'isnull' */
H5T__vlen_disk_setnull, /* 'setnull' */
H5T__vlen_disk_read, /* 'read' */
H5T__vlen_disk_write, /* 'write' */
H5T__vlen_disk_delete /* 'delete' */
};
/*-------------------------------------------------------------------------
* Function: H5Tvlen_create
*
* Purpose: Create a new variable-length datatype based on the specified
* BASE_TYPE.
*
* Return: Success: ID of new VL datatype
*
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
hid_t
H5Tvlen_create(hid_t base_id)
{
H5T_t *base = NULL; /*base datatype */
H5T_t *dt = NULL; /*new datatype */
hid_t ret_value; /*return value */
FUNC_ENTER_API(FAIL)
H5TRACE1("i", "i", base_id);
/* Check args */
if (NULL == (base = (H5T_t *)H5I_object_verify(base_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an valid base datatype");
/* Create up VL datatype */
if ((dt = H5T__vlen_create(base)) == NULL)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "invalid VL location");
/* Register the type */
if ((ret_value = H5I_register(H5I_DATATYPE, dt, true)) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register datatype");
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Tvlen_create() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_create
*
* Purpose: Create a new variable-length datatype based on the specified
* BASE_TYPE.
*
* Return: Success: new VL datatype
*
* Failure: NULL
*
*-------------------------------------------------------------------------
*/
H5T_t *
H5T__vlen_create(const H5T_t *base)
{
H5T_t *dt = NULL; /* New VL datatype */
H5T_t *ret_value = NULL; /* Return value */
FUNC_ENTER_PACKAGE
/* Check args */
assert(base);
/* Build new type */
if (NULL == (dt = H5T__alloc()))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, NULL, "memory allocation failed");
dt->shared->type = H5T_VLEN;
/*
* Force conversions (i.e. memory to memory conversions should duplicate
* data, not point to the same VL sequences)
*/
dt->shared->force_conv = true;
if (NULL == (dt->shared->parent = H5T_copy(base, H5T_COPY_ALL)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCOPY, NULL, "can't copy base datatype");
/* Inherit encoding version from base type */
dt->shared->version = base->shared->version;
/* This is a sequence, not a string */
dt->shared->u.vlen.type = H5T_VLEN_SEQUENCE;
/* Set up VL information */
if (H5T_set_loc(dt, NULL, H5T_LOC_MEMORY) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, NULL, "invalid datatype location");
/* Set return value */
ret_value = dt;
done:
if (!ret_value)
if (dt && H5T_close_real(dt) < 0)
HDONE_ERROR(H5E_DATATYPE, H5E_CANTRELEASE, NULL, "unable to release datatype info");
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_create() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_set_loc
*
* Purpose: Sets the location of a VL datatype to be either on disk or in memory
*
* Return:
* One of two values on success:
* true - If the location of any vlen types changed
* false - If the location of any vlen types is the same
* <0 is returned on failure
*
*-------------------------------------------------------------------------
*/
htri_t
H5T__vlen_set_loc(H5T_t *dt, H5VL_object_t *file, H5T_loc_t loc)
{
htri_t ret_value = false; /* Indicate success, but no location change */
FUNC_ENTER_PACKAGE
/* check parameters */
assert(dt);
assert(loc >= H5T_LOC_BADLOC && loc < H5T_LOC_MAXLOC);
/* Only change the location if it's different */
if (loc != dt->shared->u.vlen.loc || file != dt->shared->u.vlen.file) {
switch (loc) {
case H5T_LOC_MEMORY: /* Memory based VL datatype */
assert(NULL == file);
/* Mark this type as being stored in memory */
dt->shared->u.vlen.loc = H5T_LOC_MEMORY;
if (dt->shared->u.vlen.type == H5T_VLEN_SEQUENCE) {
/* Size in memory, disk size is different */
dt->shared->size = sizeof(hvl_t);
/* Set up the function pointers to access the VL sequence in memory */
dt->shared->u.vlen.cls = &H5T_vlen_mem_seq_g;
} /* end if */
else if (dt->shared->u.vlen.type == H5T_VLEN_STRING) {
/* Size in memory, disk size is different */
dt->shared->size = sizeof(char *);
/* Set up the function pointers to access the VL string in memory */
dt->shared->u.vlen.cls = &H5T_vlen_mem_str_g;
} /* end else-if */
else
assert(0 && "Invalid VL type");
/* Release owned file */
if (dt->shared->owned_vol_obj) {
if (H5VL_free_object(dt->shared->owned_vol_obj) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCLOSEOBJ, FAIL, "unable to close owned VOL object");
dt->shared->owned_vol_obj = NULL;
} /* end if */
/* Reset file pointer (since this VL is in memory) */
dt->shared->u.vlen.file = NULL;
break;
/* Disk based VL datatype */
case H5T_LOC_DISK: {
H5VL_file_cont_info_t cont_info = {H5VL_CONTAINER_INFO_VERSION, 0, 0, 0};
H5VL_file_get_args_t vol_cb_args; /* Arguments to VOL callback */
assert(file);
/* Mark this type as being stored on disk */
dt->shared->u.vlen.loc = H5T_LOC_DISK;
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_FILE_GET_CONT_INFO;
vol_cb_args.args.get_cont_info.info = &cont_info;
/* Get container info */
if (H5VL_file_get(file, &vol_cb_args, H5P_DATASET_XFER_DEFAULT, H5_REQUEST_NULL) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to get container info");
/* The datatype size is equal to 4 bytes for the sequence length
* plus the size of a blob id */
dt->shared->size = 4 + cont_info.blob_id_size;
/* Set up the function pointers to access the VL information on disk */
/* VL sequences and VL strings are stored identically on disk, so use the same functions */
dt->shared->u.vlen.cls = &H5T_vlen_disk_g;
/* Set file ID (since this VL is on disk) */
dt->shared->u.vlen.file = file;
/* dt now owns a reference to file */
if (H5T_own_vol_obj(dt, file) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "can't give ownership of VOL object");
break;
}
case H5T_LOC_BADLOC:
/* Allow undefined location. In H5Odtype.c, H5O_dtype_decode sets undefined
* location for VL type and leaves it for the caller to decide.
*/
dt->shared->u.vlen.loc = H5T_LOC_BADLOC;
/* Reset the function pointers to access the VL information */
dt->shared->u.vlen.cls = NULL;
/* Reset file pointer */
dt->shared->u.vlen.file = NULL;
break;
case H5T_LOC_MAXLOC:
/* MAXLOC is invalid */
default:
HGOTO_ERROR(H5E_DATATYPE, H5E_BADRANGE, FAIL, "invalid VL datatype location");
} /* end switch */ /*lint !e788 All appropriate cases are covered */
/* Indicate that the location changed */
ret_value = true;
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_set_loc() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_getlen
*
* Purpose: Retrieves the length of a memory based VL element.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_seq_getlen(H5VL_object_t H5_ATTR_UNUSED *file, const void *_vl, size_t *len)
{
hvl_t vl; /* User's hvl_t information */
FUNC_ENTER_PACKAGE_NOERR
assert(_vl);
assert(len);
/* Copy to ensure correct alignment */
H5MM_memcpy(&vl, _vl, sizeof(hvl_t));
*len = vl.len;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_seq_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_getptr
*
* Purpose: Retrieves the pointer for a memory based VL element.
*
* Return: Non-NULL on success/NULL on failure
*
*-------------------------------------------------------------------------
*/
static void *
H5T__vlen_mem_seq_getptr(void *_vl)
{
hvl_t vl; /* User's hvl_t information */
FUNC_ENTER_PACKAGE_NOERR
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&vl, _vl, sizeof(hvl_t));
FUNC_LEAVE_NOAPI(vl.p)
} /* end H5T__vlen_mem_seq_getptr() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_isnull
*
* Purpose: Checks if a memory sequence is the "null" sequence
*
* Return: Non-negative on success / Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_seq_isnull(const H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, bool *isnull)
{
hvl_t vl; /* User's hvl_t information */
FUNC_ENTER_PACKAGE_NOERR
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&vl, _vl, sizeof(hvl_t));
*isnull = ((vl.len == 0 || vl.p == NULL) ? true : false);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_seq_isnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_setnull
*
* Purpose: Sets a VL info object in memory to the "nil" value
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_seq_setnull(H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, void H5_ATTR_UNUSED *_bg)
{
hvl_t vl; /* Temporary hvl_t to use during operation */
FUNC_ENTER_PACKAGE_NOERR
/* check parameters */
assert(_vl);
/* Set the "nil" hvl_t */
vl.len = 0;
vl.p = NULL;
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
H5MM_memcpy(_vl, &vl, sizeof(hvl_t));
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_seq_setnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_read
*
* Purpose: "Reads" the memory based VL sequence into a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_seq_read(H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, void *buf, size_t len)
{
hvl_t vl; /* User's hvl_t information */
FUNC_ENTER_PACKAGE_NOERR
assert(buf);
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&vl, _vl, sizeof(hvl_t));
assert(vl.p);
H5MM_memcpy(buf, vl.p, len);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_seq_read() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_seq_write
*
* Purpose: "Writes" the memory based VL sequence from a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_seq_write(H5VL_object_t H5_ATTR_UNUSED *file, const H5T_vlen_alloc_info_t *vl_alloc_info,
void *_vl, void *buf, void H5_ATTR_UNUSED *_bg, size_t seq_len, size_t base_size)
{
hvl_t vl; /* Temporary hvl_t to use during operation */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* check parameters */
assert(_vl);
assert(buf);
if (seq_len) {
size_t len = seq_len * base_size; /* Sequence size */
/* Use the user's memory allocation routine if one is defined */
if (vl_alloc_info->alloc_func != NULL) {
if (NULL == (vl.p = (vl_alloc_info->alloc_func)(len, vl_alloc_info->alloc_info)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL,
"application memory allocation routine failed for VL data");
} /* end if */
else /* Default to system malloc */
if (NULL == (vl.p = malloc(len)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL, "memory allocation failed for VL data");
/* Copy the data into the newly allocated buffer */
H5MM_memcpy(vl.p, buf, len);
} /* end if */
else
vl.p = NULL;
/* Set the sequence length */
vl.len = seq_len;
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
H5MM_memcpy(_vl, &vl, sizeof(hvl_t));
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_mem_seq_write() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_getlen
*
* Purpose: Retrieves the length of a memory based VL string.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_str_getlen(H5VL_object_t H5_ATTR_UNUSED *file, const void *_vl, size_t *len)
{
const char *s = NULL; /* Pointer to the user's string information */
FUNC_ENTER_PACKAGE_NOERR
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&s, _vl, sizeof(char *));
*len = strlen(s);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_str_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_getptr
*
* Purpose: Retrieves the pointer for a memory based VL string.
*
* Return: Non-NULL on success/NULL on failure
*
*-------------------------------------------------------------------------
*/
static void *
H5T__vlen_mem_str_getptr(void *_vl)
{
char *s = NULL; /* Pointer to the user's string information */
FUNC_ENTER_PACKAGE_NOERR
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&s, _vl, sizeof(char *));
FUNC_LEAVE_NOAPI(s)
} /* end H5T__vlen_mem_str_getptr() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_isnull
*
* Purpose: Checks if a memory string is a NULL pointer
*
* Return: Non-negative on success / Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_str_isnull(const H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, bool *isnull)
{
char *s = NULL; /* Pointer to the user's string information */
FUNC_ENTER_PACKAGE_NOERR
/* Copy to ensure correct alignment */
H5MM_memcpy(&s, _vl, sizeof(char *));
*isnull = (s == NULL ? true : false);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_str_isnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_setnull
*
* Purpose: Sets a VL info object in memory to the "null" value
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_str_setnull(H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, void H5_ATTR_UNUSED *_bg)
{
char *t = NULL; /* Pointer to temporary buffer allocated */
FUNC_ENTER_PACKAGE_NOERR
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
H5MM_memcpy(_vl, &t, sizeof(char *));
FUNC_LEAVE_NOAPI(SUCCEED) /*lint !e429 The pointer in 't' has been copied */
} /* end H5T__vlen_mem_str_setnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_read
*
* Purpose: "Reads" the memory based VL string into a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_str_read(H5VL_object_t H5_ATTR_UNUSED *file, void *_vl, void *buf, size_t len)
{
char *s; /* Pointer to the user's string information */
FUNC_ENTER_PACKAGE_NOERR
if (len > 0) {
assert(buf);
assert(_vl);
/* Copy to ensure correct alignment */
H5MM_memcpy(&s, _vl, sizeof(char *));
H5MM_memcpy(buf, s, len);
}
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_mem_str_read() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_mem_str_write
*
* Purpose: "Writes" the memory based VL string from a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_mem_str_write(H5VL_object_t H5_ATTR_UNUSED *file, const H5T_vlen_alloc_info_t *vl_alloc_info,
void *_vl, void *buf, void H5_ATTR_UNUSED *_bg, size_t seq_len, size_t base_size)
{
char *t; /* Pointer to temporary buffer allocated */
size_t len; /* Maximum length of the string to copy */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* check parameters */
assert(buf);
/* Use the user's memory allocation routine if one is defined */
if (vl_alloc_info->alloc_func != NULL) {
if (NULL ==
(t = (char *)(vl_alloc_info->alloc_func)((seq_len + 1) * base_size, vl_alloc_info->alloc_info)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL,
"application memory allocation routine failed for VL data");
} /* end if */
else /* Default to system malloc */
if (NULL == (t = (char *)malloc((seq_len + 1) * base_size)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTALLOC, FAIL, "memory allocation failed for VL data");
/* 'write' the string into the buffer, with memcpy() */
len = (seq_len * base_size);
H5MM_memcpy(t, buf, len);
t[len] = '\0';
/* Set pointer in user's buffer with memcpy, to avoid alignment issues */
H5MM_memcpy(_vl, &t, sizeof(char *));
done:
FUNC_LEAVE_NOAPI(ret_value) /*lint !e429 The pointer in 't' has been copied */
} /* end H5T__vlen_mem_str_write() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_getlen
*
* Purpose: Retrieves the length of a disk based VL element.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_getlen(H5VL_object_t H5_ATTR_UNUSED *file, const void *_vl, size_t *seq_len)
{
const uint8_t *vl = (const uint8_t *)_vl; /* Pointer to the user's hvl_t information */
FUNC_ENTER_PACKAGE_NOERR
/* Check parameters */
assert(vl);
assert(seq_len);
/* Get length of sequence (different from blob size) */
UINT32DECODE(vl, *seq_len);
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5T__vlen_disk_getlen() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_isnull
*
* Purpose: Checks if a disk VL info object is the "nil" object
*
* Return: Non-negative on success / Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_isnull(const H5VL_object_t *file, void *_vl, bool *isnull)
{
H5VL_blob_specific_args_t vol_cb_args; /* Arguments to VOL callback */
uint8_t *vl = (uint8_t *)_vl; /* Pointer to the user's hvl_t information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check parameters */
assert(file);
assert(vl);
assert(isnull);
/* Skip the sequence's length */
vl += 4;
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_BLOB_ISNULL;
vol_cb_args.args.is_null.isnull = isnull;
/* Check if blob ID is "nil" */
if (H5VL_blob_specific(file, vl, &vol_cb_args) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to check if a blob ID is 'nil'");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_disk_isnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_setnull
*
* Purpose: Sets a VL info object on disk to the "nil" value
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_setnull(H5VL_object_t *file, void *_vl, void *bg)
{
H5VL_blob_specific_args_t vol_cb_args; /* Arguments to VOL callback */
uint8_t *vl = (uint8_t *)_vl; /* Pointer to the user's hvl_t information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* check parameters */
assert(file);
assert(vl);
/* Free heap object for old data */
if (bg != NULL)
/* Delete sequence in destination location */
if (H5T__vlen_disk_delete(file, bg) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREMOVE, FAIL, "unable to remove background heap object");
/* Set the length of the sequence */
UINT32ENCODE(vl, 0);
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_BLOB_SETNULL;
/* Set blob ID to "nil" */
if (H5VL_blob_specific(file, vl, &vol_cb_args) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "unable to set a blob ID to 'nil'");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_disk_setnull() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_read
*
* Purpose: Reads the disk based VL element into a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_read(H5VL_object_t *file, void *_vl, void *buf, size_t len)
{
const uint8_t *vl = (const uint8_t *)_vl; /* Pointer to the user's hvl_t information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check parameters */
assert(file);
assert(vl);
assert(buf);
/* Skip the length of the sequence */
vl += 4;
/* Retrieve blob */
if (H5VL_blob_get(file, vl, buf, len, NULL) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to get blob");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_disk_read() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_write
*
* Purpose: Writes the disk based VL element from a buffer
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_write(H5VL_object_t *file, const H5T_vlen_alloc_info_t H5_ATTR_UNUSED *vl_alloc_info,
void *_vl, void *buf, void *_bg, size_t seq_len, size_t base_size)
{
uint8_t *vl = (uint8_t *)_vl; /* Pointer to the user's hvl_t information */
uint8_t *bg = (uint8_t *)_bg; /* Pointer to the old data hvl_t */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* check parameters */
assert(vl);
assert(seq_len == 0 || buf);
assert(file);
/* Free heap object for old data, if non-NULL */
if (bg != NULL)
if (H5T__vlen_disk_delete(file, bg) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREMOVE, FAIL, "unable to remove background heap object");
/* Set the length of the sequence */
UINT32ENCODE(vl, seq_len);
/* Store blob */
if (H5VL_blob_put(file, buf, (seq_len * base_size), vl, NULL) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, FAIL, "unable to put blob");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_disk_write() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_disk_delete
*
* Purpose: Deletes a disk-based VL element
*
* Return: Non-negative on success / Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5T__vlen_disk_delete(H5VL_object_t *file, void *_vl)
{
uint8_t *vl = (uint8_t *)_vl; /* Pointer to the user's hvl_t information */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_PACKAGE
/* Check parameters */
assert(file);
/* Free heap object for old data */
if (vl != NULL) {
size_t seq_len; /* VL sequence's length */
/* Get length of sequence */
UINT32DECODE(vl, seq_len);
/* Delete object, if length > 0 */
if (seq_len > 0) {
H5VL_blob_specific_args_t vol_cb_args; /* Arguments to VOL callback */
/* Set up VOL callback arguments */
vol_cb_args.op_type = H5VL_BLOB_DELETE;
if (H5VL_blob_specific(file, vl, &vol_cb_args) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREMOVE, FAIL, "unable to delete blob");
} /* end if */
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_disk_delete() */
/*-------------------------------------------------------------------------
* Function: H5T__vlen_reclaim
*
* Purpose: Internal recursive routine to free VL datatypes
*
* Return: Non-negative on success / Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5T__vlen_reclaim(void *elem, const H5T_t *dt, H5T_vlen_alloc_info_t *alloc_info)
{
unsigned u; /* Local index variable */
H5MM_free_t free_func; /* Free function */
void *free_info; /* Free info */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(FAIL)
/* Sanity checks */
assert(elem);
assert(dt);
assert(alloc_info);
free_func = alloc_info->free_func;
free_info = alloc_info->free_info;
/* Check the datatype of this element */
switch (dt->shared->type) {
case H5T_ARRAY:
/* Recurse on each element, if the array's base type is array, VL, enum or compound */
if (H5T_IS_COMPLEX(dt->shared->parent->shared->type)) {
void *off; /* offset of field */
/* Calculate the offset member and recurse on it */
for (u = 0; u < dt->shared->u.array.nelem; u++) {
off = ((uint8_t *)elem) + u * (dt->shared->parent->shared->size);
if (H5T_reclaim_cb(off, dt->shared->parent, 0, NULL, alloc_info) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "unable to free array element");
} /* end for */
} /* end if */
break;
case H5T_COMPOUND:
/* Check each field and recurse on VL, compound, enum or array ones */
for (u = 0; u < dt->shared->u.compnd.nmembs; u++) {
/* Recurse if it's VL, compound, enum or array */
if (H5T_IS_COMPLEX(dt->shared->u.compnd.memb[u].type->shared->type)) {
void *off; /* offset of field */
/* Calculate the offset member and recurse on it */
off = ((uint8_t *)elem) + dt->shared->u.compnd.memb[u].offset;
if (H5T_reclaim_cb(off, dt->shared->u.compnd.memb[u].type, 0, NULL, alloc_info) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "unable to free compound field");
} /* end if */
} /* end for */
break;
case H5T_VLEN:
/* Recurse on the VL information if it's VL, compound, enum or array, then free VL sequence */
if (dt->shared->u.vlen.type == H5T_VLEN_SEQUENCE) {
hvl_t *vl = (hvl_t *)elem; /* Temp. ptr to the vl info */
/* Check if there is anything actually in this sequence */
if (vl->len != 0) {
/* Recurse if it's VL, array, enum or compound */
if (H5T_IS_COMPLEX(dt->shared->parent->shared->type)) {
void *off; /* offset of field */
/* Calculate the offset of each array element and recurse on it */
while (vl->len > 0) {
off = ((uint8_t *)vl->p) + (vl->len - 1) * dt->shared->parent->shared->size;
if (H5T_reclaim_cb(off, dt->shared->parent, 0, NULL, alloc_info) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "unable to free VL element");
vl->len--;
} /* end while */
} /* end if */
/* Free the VL sequence */
if (free_func != NULL)
(*free_func)(vl->p, free_info);
else
free(vl->p);
} /* end if */
}
else if (dt->shared->u.vlen.type == H5T_VLEN_STRING) {
/* Free the VL string */
if (free_func != NULL)
(*free_func)(*(char **)elem, free_info);
else
free(*(char **)elem);
}
else {
assert(0 && "Invalid VL type");
} /* end else */
break;
/* Don't do anything for simple types */
case H5T_INTEGER:
case H5T_FLOAT:
case H5T_TIME:
case H5T_STRING:
case H5T_BITFIELD:
case H5T_OPAQUE:
case H5T_ENUM:
break;
/* Should never have these values */
case H5T_REFERENCE:
case H5T_NO_CLASS:
case H5T_NCLASSES:
default:
HGOTO_ERROR(H5E_DATATYPE, H5E_BADRANGE, FAIL, "invalid VL datatype class");
break;
} /* end switch */ /*lint !e788 All appropriate cases are covered */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5T__vlen_reclaim() */
/*-------------------------------------------------------------------------
* Function: H5T_vlen_reclaim_elmt
*
* Purpose: Alternative method to reclaim any VL data for a buffer element.
*
* Use this function when the datatype is already available, but
* the allocation info is needed from the context before jumping
* into recursion.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
herr_t
H5T_vlen_reclaim_elmt(void *elem, H5T_t *dt)
{
H5T_vlen_alloc_info_t vl_alloc_info; /* VL allocation info */
herr_t ret_value = SUCCEED; /* return value */
assert(dt);
assert(elem);
FUNC_ENTER_NOAPI(FAIL)
/* Get VL allocation info */
if (H5CX_get_vlen_alloc_info(&vl_alloc_info) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "unable to retrieve VL allocation info");
/* Recurse on buffer to free dynamic fields */
if (H5T__vlen_reclaim(elem, dt, &vl_alloc_info) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTFREE, FAIL, "can't reclaim vlen elements");
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* H5T_vlen_reclaim_elmt() */
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