1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
#include "H5VLiod_server.h"
#ifdef H5_HAVE_EFF
static herr_t
setup_eff_container(iod_handle_t coh, uint32_t cs_scope, unsigned num_peers, hbool_t acquire,
hid_t fcpl_id, iod_obj_id_t root_id, iod_obj_id_t mdkv_id,
iod_obj_id_t attrkv_id, iod_obj_id_t oidkv_id, iod_handles_t *_root_oh);
/*
* Programmer: Mohamad Chaarawi <chaarawi@hdfgroup.gov>
* February, 2013
*
* Purpose: The IOD plugin server side file routines.
*/
/*-------------------------------------------------------------------------
* Function: H5VL_iod_server_file_create_cb
*
* Purpose: Creates a file as a iod HDF5 file.
*
* Return: Success: SUCCEED
* Failure: Negative
*
* Programmer: Mohamad Chaarawi
* January, 2013
*
*-------------------------------------------------------------------------
*/
void
H5VL_iod_server_file_create_cb(AXE_engine_t UNUSED axe_engine,
size_t UNUSED num_n_parents, AXE_task_t UNUSED n_parents[],
size_t UNUSED num_s_parents, AXE_task_t UNUSED s_parents[],
void *_op_data)
{
op_data_t *op_data = (op_data_t *)_op_data;
file_create_in_t *input = (file_create_in_t *)op_data->input;
file_create_out_t output;
unsigned num_peers = input->num_peers; /* the number of peers participating in creation */
iod_obj_id_t root_id = input->root_id;
iod_obj_id_t mdkv_id = input->mdkv_id;
iod_obj_id_t attrkv_id = input->attrkv_id;
iod_obj_id_t oidkv_id = input->oidkv_id;
hid_t fcpl_id;
unsigned int mode; /* create mode */
iod_handle_t coh; /* container handle */
iod_handles_t root_oh; /* root object handle */
iod_handle_t mdkv_oh; /* metadata object handle for KV to store file's metadata */
iod_ret_t ret, root_ret;
iod_trans_id_t first_tid = 0;
uint32_t cs_scope = 0;
iod_hint_list_t *con_open_hint = NULL;
iod_hint_list_t *obj_create_hint = NULL;
hbool_t enable_checksum = FALSE;
herr_t ret_value = SUCCEED;
#if H5_EFF_DEBUG
fprintf(stderr, "Start file create %s ", input->name);
fprintf(stderr, "with MDKV %"PRIx64" ", mdkv_id);
fprintf(stderr, "with attrKV %"PRIx64"\n", attrkv_id);
fprintf(stderr, "with OIDKV %"PRIx64"\n", oidkv_id);
#endif
coh.cookie = IOD_OH_UNDEFINED;
/* convert HDF5 flags to IOD flags */
mode = (input->flags&H5F_ACC_RDWR) ? IOD_CONT_RW : IOD_CONT_R;
if (input->flags&H5F_ACC_CREAT)
mode |= IOD_CONT_CREATE;
if(H5P_DEFAULT == input->fcpl_id)
input->fcpl_id = H5Pcopy(H5P_FILE_CREATE_DEFAULT);
fcpl_id = input->fcpl_id;
if(H5Pget_metadata_integrity_scope(input->fapl_id, &cs_scope) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scope for data integrity checks");
if(H5Pget_ocpl_enable_checksum(fcpl_id, &enable_checksum) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scope for data integrity checks");
/* scratch pad integrity in the container */
if(cs_scope & H5_CHECKSUM_IOD) {
con_open_hint = (iod_hint_list_t *)malloc(sizeof(iod_hint_list_t) + sizeof(iod_hint_t));
con_open_hint->num_hint = 1;
con_open_hint->hint[0].key = "iod_hint_co_scratch_cksum";
}
/* root group integrity */
if((cs_scope & H5_CHECKSUM_IOD) && enable_checksum) {
obj_create_hint = (iod_hint_list_t *)malloc(sizeof(iod_hint_list_t) + sizeof(iod_hint_t));
obj_create_hint->num_hint = 1;
obj_create_hint->hint[0].key = "iod_hint_obj_enable_cksum";
}
/* Create the Container */
ret = iod_container_open(input->name, con_open_hint, mode, &coh, NULL);
if(ret < 0) {
coh.cookie = IOD_OH_UNDEFINED;
HGOTO_ERROR_FF(ret, "can't create container");
}
/* MSC - skip transaction 0 since it can't be persisted */
ret = iod_trans_start(coh, &first_tid, NULL, num_peers, IOD_TRANS_W, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't start transaction 0");
/* Finish the transaction */
ret = iod_trans_finish(coh, first_tid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction 0");
first_tid = 1;
/* Take transaction 1 to create root group */
ret = iod_trans_start(coh, &first_tid, NULL, num_peers, IOD_TRANS_W, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't start transaction 1");
/* create the root group */
root_ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &root_id, NULL);
if(0 == root_ret || -EEXIST == root_ret) {
/* root group has been created, open it */
ret = iod_obj_open_write(coh, root_id, first_tid, NULL, &root_oh.wr_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open root group for write");
ret = iod_obj_open_read(coh, root_id, first_tid, NULL, &root_oh.rd_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open root group for read");
}
else {
HGOTO_ERROR_FF(root_ret, "can't create root group");
}
/* for the process that succeeded in creating the group, create
the scratch pad for it too. */
if(0 == root_ret) {
scratch_pad sp;
iod_kv_t kv;
uint64_t value = 1;
/* create the metadata KV object for the root group */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &mdkv_id, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't create metadata KV object");
/* create the attribute KV object for the root group */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &attrkv_id, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't create attribute KV object");
/* create the KV object to hold each client's indexes for
object OIDs after each trans_finish and file_close */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &oidkv_id, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't create array for OID indexes");
/* set values for the scratch pad object */
sp[0] = mdkv_id;
sp[1] = attrkv_id;
sp[2] = oidkv_id;
sp[3] = IOD_OBJ_INVALID;
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t sp_cs;
sp_cs = H5_checksum_crc64(&sp, sizeof(sp));
/* set scratch pad in root group */
ret = iod_obj_set_scratch(root_oh.wr_oh, first_tid, &sp, &sp_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set scratch pad");
}
else {
ret = iod_obj_set_scratch(root_oh.wr_oh, first_tid, &sp, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set scratch pad");
}
/* Store Metadata in scratch pad */
ret = iod_obj_open_write(coh, input->mdkv_id, first_tid, NULL, &mdkv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open metadata KV");
/* insert plist metadata */
ret = H5VL_iod_insert_plist(mdkv_oh, first_tid, fcpl_id, cs_scope, NULL, NULL);
if(SUCCEED != ret)
HGOTO_ERROR_FF(ret, "can't insert link count KV value");
kv.value = &value;
kv.value_len = sizeof(uint64_t);
kv.key = (void *)H5VL_IOD_KEY_KV_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_KV_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.key = (void *)H5VL_IOD_KEY_ARRAY_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_ARRAY_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.key = (void *)H5VL_IOD_KEY_BLOB_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_BLOB_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
ret = iod_obj_close(mdkv_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close root object handle");
}
/* Finish the transaction */
ret = iod_trans_finish(coh, first_tid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction 1");
output.coh.cookie = coh.cookie;
output.root_oh.rd_oh = root_oh.rd_oh;
output.root_oh.wr_oh = root_oh.wr_oh;
#if H5_EFF_DEBUG
fprintf(stderr, "Done with file create coh: %"PRIu64" root rd: %"PRIu64" wr: %"PRIu64"\n",
coh.cookie, root_oh.rd_oh.cookie, root_oh.wr_oh.cookie);
#endif
HG_Handler_start_output(op_data->hg_handle, &output);
done:
if(ret_value < 0) {
if(coh.cookie != IOD_OH_UNDEFINED) {
if((ret = iod_container_close(coh, NULL, NULL)) < 0)
HDONE_ERROR_FF(ret, "can't close container");
}
output.coh.cookie = IOD_OH_UNDEFINED;
output.root_oh.rd_oh.cookie = IOD_OH_UNDEFINED;
output.root_oh.wr_oh.cookie = IOD_OH_UNDEFINED;
HG_Handler_start_output(op_data->hg_handle, &ret_value);
}
HG_Handler_free_input(op_data->hg_handle, input);
HG_Handler_free(op_data->hg_handle);
input = (file_create_in_t *)H5MM_xfree(input);
op_data = (op_data_t *)H5MM_xfree(op_data);
if(con_open_hint) {
free(con_open_hint);
con_open_hint = NULL;
}
if(obj_create_hint) {
free(obj_create_hint);
obj_create_hint = NULL;
}
} /* end H5VL_iod_server_file_create_cb() */
/*-------------------------------------------------------------------------
* Function: H5VL_iod_server_file_open_cb
*
* Purpose: Opens a file as a iod HDF5 file.
*
* Return: Success: SUCCEED
* Failure: Negative
*
* Programmer: Mohamad Chaarawi
* January, 2013
*
*-------------------------------------------------------------------------
*/
void
H5VL_iod_server_file_open_cb(AXE_engine_t UNUSED axe_engine,
size_t UNUSED num_n_parents, AXE_task_t UNUSED n_parents[],
size_t UNUSED num_s_parents, AXE_task_t UNUSED s_parents[],
void *_op_data)
{
op_data_t *op_data = (op_data_t *)_op_data;
file_open_in_t *input = (file_open_in_t *)op_data->input;
file_open_out_t output;
unsigned int mode = input->flags; /* File Open mode */
hbool_t acquire = input->acquire;
unsigned num_peers = input->num_peers; /* the number of peers participating in creation */
iod_handle_t coh; /* container handle */
iod_handles_t root_oh; /* root object handle */
iod_handle_t mdkv_oh; /* metadata object handle for KV to store file's metadata */
iod_handle_t oidkv_oh; /* object handle for KV to store file's OID indexes*/
int num_entries;
scratch_pad sp;
iod_checksum_t sp_cs = 0;
iod_cont_trans_stat_t *tids = NULL;
iod_trans_id_t rtid;
iod_size_t key_size = 0, val_size = 0;
uint32_t cs_scope = 0;
iod_ret_t ret;
iod_hint_list_t *con_open_hint = NULL;
herr_t ret_value = SUCCEED;
#if H5_EFF_DEBUG
fprintf(stderr, "Start file open %s %d %d\n", input->name, input->flags, input->fapl_id);
#endif
coh.cookie = IOD_OH_UNDEFINED;
output.fcpl_id = FAIL;
if(H5F_ACC_RDWR == mode)
mode = IOD_CONT_RW;
else if(H5F_ACC_RDONLY == mode)
mode = IOD_CONT_R;
else
HGOTO_ERROR_FF(FAIL, "invalid mode");
/* MSC - can't open file read only since IOD will fail when object
are opened for write */
if(mode == IOD_CONT_R)
mode = IOD_CONT_RW;
if(H5Pget_metadata_integrity_scope(input->fapl_id, &cs_scope) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scope for data integrity checks");
/* scratch pad integrity in the container */
if(cs_scope & H5_CHECKSUM_IOD) {
con_open_hint = (iod_hint_list_t *)malloc(sizeof(iod_hint_list_t) + sizeof(iod_hint_t));
con_open_hint->num_hint = 1;
con_open_hint->hint[0].key = "iod_hint_co_scratch_cksum";
}
/* open the container */
ret = iod_container_open(input->name, con_open_hint, mode, &coh, NULL);
if(ret < 0) {
coh.cookie = IOD_OH_UNDEFINED;
HGOTO_ERROR_FF(ret, "can't open file");
}
ret = iod_query_cont_trans_stat(coh, &tids, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't get container tids status");
rtid = tids->latest_rdable;
ret = iod_free_cont_trans_stat(coh, tids);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't free container transaction status object");
if(rtid == -1) {
output.fcpl_id = H5Pcopy(H5P_FILE_CREATE_DEFAULT);
output.kv_oid_index = 4;
output.array_oid_index = 0;
output.blob_oid_index = 0;
output.root_id = 0;
output.mdkv_id = 1*num_peers;
output.attrkv_id = 2*num_peers;
output.oidkv_id = 3*num_peers;
IOD_OBJID_SETTYPE(output.root_id, IOD_OBJ_KV)
IOD_OBJID_SETOWNER_APP(output.root_id)
IOD_OBJID_SETTYPE(output.mdkv_id, IOD_OBJ_KV)
IOD_OBJID_SETOWNER_APP(output.mdkv_id)
IOD_OBJID_SETTYPE(output.attrkv_id, IOD_OBJ_KV)
IOD_OBJID_SETOWNER_APP(output.attrkv_id)
IOD_OBJID_SETTYPE(output.oidkv_id, IOD_OBJ_KV)
IOD_OBJID_SETOWNER_APP(output.oidkv_id)
output.coh.cookie = coh.cookie;
fprintf(stderr, "Recreating Container HDF5 metadata ");
fprintf(stderr, "with MDKV %"PRIx64" ", output.mdkv_id);
fprintf(stderr, "with attrKV %"PRIx64" ", output.attrkv_id);
fprintf(stderr, "with OIDKV %"PRIx64"\n", output.oidkv_id);
if(setup_eff_container(coh, cs_scope, num_peers, acquire, output.fcpl_id,
output.root_id, output.mdkv_id,
output.attrkv_id, output.oidkv_id, &root_oh) < 0)
HGOTO_ERROR_FF(FAIL, "can't create container metadata");
output.root_oh.rd_oh = root_oh.rd_oh;
output.root_oh.wr_oh = root_oh.wr_oh;
if(acquire == TRUE)
output.c_version = 1;
else
output.c_version = IOD_TID_UNKNOWN;
HG_Handler_start_output(op_data->hg_handle, &output);
goto done;
}
ret = iod_trans_start(coh, &rtid, NULL, num_peers, IOD_TRANS_R, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't start transaction");
/* open the root group */
if ((ret = iod_obj_open_read(coh, ROOT_ID, rtid, NULL, &root_oh.rd_oh, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't open root object for read");
if ((ret = iod_obj_open_write(coh, ROOT_ID, rtid, NULL, &root_oh.wr_oh, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't open root object for write");
/* get scratch pad of root group */
if((ret = iod_obj_get_scratch(root_oh.rd_oh, rtid, &sp, &sp_cs, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't get scratch pad for root object");
if(sp_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* verify scratch pad integrity */
if(H5VL_iod_verify_scratch_pad(&sp, sp_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Scratch Pad failed integrity check");
}
/* open the metadata KV object */
ret = iod_obj_open_read(coh, sp[0], rtid, NULL, &mdkv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open MD KV");
/* retrieve all metadata from scratch pad */
ret = H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_PLIST, H5VL_IOD_KEY_OBJ_CPL,
cs_scope, NULL, &output.fcpl_id);
if(SUCCEED != ret)
HGOTO_ERROR_FF(ret, "failed to retrieve fcpl");
/* open the OID indexes KV object */
ret = iod_obj_open_read(coh, sp[2], rtid, NULL, &oidkv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open OID KV");
ret = iod_kv_get_num(oidkv_oh, rtid, &num_entries, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't get number of KV entries");
val_size = sizeof(uint64_t);
/* This was not a clean shutdown, so gather all the oid indexes
and compute the max */
if(0 != num_entries) {
iod_kv_params_t *kvs = NULL;
iod_kv_t *kv = NULL;
iod_checksum_t *oid_cs = NULL;
iod_ret_t *oid_ret = NULL;
int i;
kvs = (iod_kv_params_t *)malloc(sizeof(iod_kv_params_t) * (size_t)num_entries);
kv = (iod_kv_t *)malloc(sizeof(iod_kv_t) * (size_t)num_entries);
oid_cs = (iod_checksum_t *)malloc(sizeof(iod_checksum_t) * (size_t)num_entries);
oid_ret = (iod_ret_t *)malloc(sizeof(iod_ret_t) * (size_t)num_entries);
for(i=0 ; i<num_entries ; i++) {
kv[i].key = malloc(sizeof(uint32_t));
kv[i].key_len = sizeof(uint32_t);
kv[i].value = malloc(val_size * 3);
kv[i].value_len = val_size * 3;
kvs[i].kv = &kv[i];
kvs[i].cs = &oid_cs[i];
kvs[i].ret = &oid_ret[i];
}
ret = iod_kv_get_list(oidkv_oh, rtid, NULL, 0, &num_entries, kvs, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't get KV list from OID KV");
output.kv_oid_index = 0;
output.array_oid_index = 0;
output.blob_oid_index = 0;
for(i=0 ; i<num_entries ; i++) {
uint64_t *oid_index = (uint64_t *)kv[i].value;
if(output.kv_oid_index < oid_index[0])
output.kv_oid_index = oid_index[0];
if(output.array_oid_index < oid_index[1])
output.array_oid_index = oid_index[1];
if(output.blob_oid_index < oid_index[2])
output.blob_oid_index = oid_index[2];
}
for(i=0 ; i<num_entries ; i++) {
free(kv[i].key);
free(kv[i].value);
}
fprintf(stderr, "OID KV index: %d\n", (int)output.kv_oid_index);
fprintf(stderr, "OID ARRAY index: %d\n", (int)output.array_oid_index);
fprintf(stderr, "OID BLOB index: %d\n", (int)output.blob_oid_index);
free(kv);
free(oid_cs);
free(oid_ret);
free(kvs);
}
/* This was a clean shutdown, so the maximum is already computed
and stored in the metadata KV */
else {
iod_checksum_t *iod_cs = NULL;
if(cs_scope & H5_CHECKSUM_IOD) {
iod_cs = (iod_checksum_t *)malloc(sizeof(iod_checksum_t) * 2);
}
key_size = 1 + strlen(H5VL_IOD_KEY_KV_IDS_INDEX);
ret = iod_kv_get_value(mdkv_oh, rtid, H5VL_IOD_KEY_KV_IDS_INDEX, key_size,
&output.kv_oid_index, &val_size, iod_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "KV index lookup failed");
if(cs_scope & H5_CHECKSUM_IOD) {
if(H5VL_iod_verify_kv_pair(H5VL_IOD_KEY_KV_IDS_INDEX, key_size,
&output.kv_oid_index, val_size, iod_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Corruption detected when reading metadata from IOD");
}
key_size = 1 + strlen(H5VL_IOD_KEY_ARRAY_IDS_INDEX);
ret = iod_kv_get_value(mdkv_oh, rtid, H5VL_IOD_KEY_ARRAY_IDS_INDEX, key_size,
&output.array_oid_index, &val_size, iod_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "Array index lookup failed");
if(cs_scope & H5_CHECKSUM_IOD) {
if(H5VL_iod_verify_kv_pair(H5VL_IOD_KEY_ARRAY_IDS_INDEX, key_size,
&output.array_oid_index, val_size, iod_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Corruption detected when reading metadata from IOD");
}
key_size = 1 + strlen(H5VL_IOD_KEY_BLOB_IDS_INDEX);
ret = iod_kv_get_value(mdkv_oh, rtid, H5VL_IOD_KEY_BLOB_IDS_INDEX, key_size,
&output.blob_oid_index, &val_size, iod_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "BLOB index lookup failed");
if(cs_scope & H5_CHECKSUM_IOD) {
if(H5VL_iod_verify_kv_pair(H5VL_IOD_KEY_BLOB_IDS_INDEX, key_size,
&output.blob_oid_index, val_size, iod_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Corruption detected when reading metadata from IOD");
}
if(iod_cs) {
free(iod_cs);
iod_cs = NULL;
}
}
/* close the oid KV */
ret = iod_obj_close(oidkv_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close OID KV");
/* close the metadata KV */
ret = iod_obj_close(mdkv_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close MD KV");
output.coh.cookie = coh.cookie;
output.root_id = ROOT_ID;
output.mdkv_id = sp[0];
output.attrkv_id = sp[1];
output.oidkv_id = sp[2];
output.root_oh.rd_oh = root_oh.rd_oh;
output.root_oh.wr_oh = root_oh.wr_oh;
output.c_version = rtid;
/* If the user did not ask to acquire the latest readable version, finish it here */
if(TRUE != acquire) {
output.c_version = IOD_TID_UNKNOWN;
ret = iod_trans_finish(coh, rtid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction 0");
}
#if H5_EFF_DEBUG
fprintf(stderr, "Done with file open coh: %"PRIu64" root rd: %"PRIu64" wr: %"PRIu64" CV: %"PRIu64"\n",
coh.cookie, root_oh.rd_oh.cookie, root_oh.wr_oh.cookie, rtid);
#endif
HG_Handler_start_output(op_data->hg_handle, &output);
done:
if(FAIL != output.fcpl_id)
H5Pclose(output.fcpl_id);
if(ret_value < 0) {
if(coh.cookie != IOD_OH_UNDEFINED) {
if((ret = iod_container_close(coh, NULL, NULL)) < 0)
HDONE_ERROR_FF(ret, "can't close container");
}
output.coh.cookie = IOD_OH_UNDEFINED;
output.root_id = IOD_OBJ_INVALID;
output.root_oh.rd_oh.cookie = IOD_OH_UNDEFINED;
output.root_oh.wr_oh.cookie = IOD_OH_UNDEFINED;
output.fcpl_id = FAIL;
output.kv_oid_index = 0;
output.array_oid_index = 0;
output.blob_oid_index = 0;
output.c_version = IOD_TID_UNKNOWN;
HG_Handler_start_output(op_data->hg_handle, &output);
}
HG_Handler_free_input(op_data->hg_handle, input);
HG_Handler_free(op_data->hg_handle);
input = (file_open_in_t *)H5MM_xfree(input);
op_data = (op_data_t *)H5MM_xfree(op_data);
if(con_open_hint) {
free(con_open_hint);
con_open_hint = NULL;
}
} /* end H5VL_iod_server_file_open_cb() */
/*-------------------------------------------------------------------------
* Function: H5VL_iod_server_file_close_cb
*
* Purpose: Closes iod HDF5 file.
*
* Return: Success: SUCCEED
* Failure: Negative
*
* Programmer: Mohamad Chaarawi
* January, 2013
*
*-------------------------------------------------------------------------
*/
void
H5VL_iod_server_file_close_cb(AXE_engine_t UNUSED axe_engine,
size_t UNUSED num_n_parents, AXE_task_t UNUSED n_parents[],
size_t UNUSED num_s_parents, AXE_task_t UNUSED s_parents[],
void *_op_data)
{
op_data_t *op_data = (op_data_t *)_op_data;
file_close_in_t *input = (file_close_in_t *)op_data->input;
iod_handle_t coh = input->coh;
iod_handles_t root_oh = input->root_oh;
iod_ret_t ret;
herr_t ret_value = SUCCEED;
#if H5_EFF_DEBUG
fprintf(stderr, "Start file close\n");
#endif
/* The root client request will create a transaction and store the
final indexes for used up IDs */
if(input->max_kv_index || input->max_array_index || input->max_blob_index) {
iod_cont_trans_stat_t *tids = NULL;
iod_trans_id_t trans_num, rtid;
scratch_pad sp;
iod_checksum_t sp_cs = 0;
iod_kv_t kv;
iod_handle_t mdkv_oh; /* metadata object handle for KV to store file's metadata */
uint32_t cs_scope = input->cs_scope;
ret = iod_query_cont_trans_stat(coh, &tids, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't get container tids status");
trans_num = tids->latest_wrting + 1;
rtid = tids->latest_rdable;
ret = iod_free_cont_trans_stat(coh, tids);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't free container transaction status object");
#if H5_EFF_DEBUG
fprintf(stderr, "File Close starting transaction %"PRIu64" rcxt %"PRIu64"\n",
trans_num, rtid);
#endif
if((ret = iod_trans_start(coh, &rtid, NULL, 1, IOD_TRANS_R, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't start READ transaction");
if((ret = iod_trans_start(coh, &trans_num, NULL, 1, IOD_TRANS_W, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't start WRITE transaction");
/* get scratch pad of root group */
if((ret = iod_obj_get_scratch(root_oh.rd_oh, rtid, &sp, &sp_cs, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't get scratch pad for root object");
if(sp_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* verify scratch pad integrity */
if(H5VL_iod_verify_scratch_pad(&sp, sp_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Scratch Pad failed integrity check");
}
/* open the metadata KV object */
ret = iod_obj_open_write(coh, sp[0], trans_num, NULL, &mdkv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open metadata KV");
/* insert current indexes in the metadata KV object */
kv.value = &input->max_kv_index;
kv.value_len = sizeof(iod_obj_id_t);
kv.key = (void *)H5VL_IOD_KEY_KV_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_KV_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.value = &input->max_array_index;
kv.value_len = sizeof(iod_obj_id_t);
kv.key = (void *)H5VL_IOD_KEY_ARRAY_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_ARRAY_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.value = &input->max_blob_index;
kv.value_len = sizeof(iod_obj_id_t);
kv.key = (void *)H5VL_IOD_KEY_BLOB_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_BLOB_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, trans_num, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
ret = iod_obj_close(mdkv_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close root object handle");
/* open the OID kv object and remove all entries since this is
a clean shutdown and the summary is stored in the metadata
KV. */
{
iod_handles_t oidkv_oh;
int num_entries = 0, i;
iod_kv_params_t *kvs = NULL;
iod_kv_t *oid_kv = NULL;
iod_checksum_t *oid_cs = NULL;
iod_ret_t *oid_ret = NULL;
ret = iod_obj_open_write(coh, sp[2], trans_num, NULL, &oidkv_oh.wr_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open oid KV");
ret = iod_obj_open_read(coh, sp[2], rtid, NULL, &oidkv_oh.rd_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open oid KV");
ret = iod_kv_get_num(oidkv_oh.rd_oh, rtid, &num_entries, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't get number of KV entries");
#if H5_EFF_DEBUG
fprintf(stderr, "NUM entries in OID index KV = %d\n", num_entries);
#endif
if(num_entries) {
kvs = (iod_kv_params_t *)malloc(sizeof(iod_kv_params_t) * (size_t)num_entries);
oid_kv = (iod_kv_t *)malloc(sizeof(iod_kv_t) * (size_t)num_entries);
oid_cs = (iod_checksum_t *)malloc(sizeof(iod_checksum_t) * (size_t)num_entries);
oid_ret = (iod_ret_t *)malloc(sizeof(iod_ret_t) * (size_t)num_entries);
for(i=0 ; i<num_entries ; i++) {
oid_kv[i].key = malloc(sizeof(uint32_t));
oid_kv[i].key_len = sizeof(uint32_t);
kvs[i].kv = &oid_kv[i];
kvs[i].cs = &oid_cs[i];
kvs[i].ret = &oid_ret[i];
}
ret = iod_kv_list_key(oidkv_oh.rd_oh, rtid, NULL, 0, &num_entries, kvs, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't get list of keys");
ret = iod_kv_unlink_keys(oidkv_oh.wr_oh, trans_num, NULL, num_entries, kvs, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't unlink keys in OID index KV");
for(i=0 ; i<num_entries ; i++)
free(oid_kv[i].key);
free(oid_kv);
free(oid_cs);
free(oid_ret);
free(kvs);
}
ret = iod_obj_close(oidkv_oh.rd_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close object handle");
ret = iod_obj_close(oidkv_oh.wr_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close object handle");
}
/* finish the transaction */
ret = iod_trans_finish(coh, rtid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction");
/* finish the transaction */
ret = iod_trans_finish(coh, trans_num, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction");
if(TRUE == input->persist_on_close) {
#if H5_EFF_DEBUG
fprintf(stderr, "Persisting Last TID (%"PRIu64") before closing\n", trans_num);
#endif
/* persist the last transaction */
if((ret = iod_trans_persist(coh, trans_num, NULL, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't persist before closing container");
}
}
#if H5_EFF_DEBUG
fprintf(stderr, "Closing ROOT Group: R: %"PRIu64" W: %"PRIu64"\n",
root_oh.rd_oh.cookie, root_oh.wr_oh.cookie);
#endif
/* close the root group */
ret = iod_obj_close(root_oh.rd_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close root object handle");
ret = iod_obj_close(root_oh.wr_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close root object handle");
#if H5_EFF_DEBUG
fprintf(stderr, "Closing Container: %"PRIu64"\n", coh.cookie);
#endif
/* close the container */
if((ret = iod_container_close(coh, NULL, NULL)) < 0)
HGOTO_ERROR_FF(ret, "can't close container");
done:
#if H5_EFF_DEBUG
fprintf(stderr, "Done with file close, sending response %d to client\n", ret_value);
#endif
if(HG_SUCCESS != HG_Handler_start_output(op_data->hg_handle, &ret_value))
HDONE_ERROR_FF(FAIL, "can't send result of file close to client");
HG_Handler_free_input(op_data->hg_handle, input);
HG_Handler_free(op_data->hg_handle);
input = (file_close_in_t *)H5MM_xfree(input);
op_data = (op_data_t *)H5MM_xfree(op_data);
} /* end H5VL_iod_server_file_close_cb() */
#if 1
static herr_t
setup_eff_container(iod_handle_t coh, uint32_t cs_scope, unsigned num_peers, hbool_t acquire,
hid_t fcpl_id, iod_obj_id_t root_id, iod_obj_id_t mdkv_id,
iod_obj_id_t attrkv_id, iod_obj_id_t oidkv_id, iod_handles_t *_root_oh)
{
iod_handles_t root_oh; /* root object handle */
iod_handle_t mdkv_oh; /* metadata object handle for KV to store file's metadata */
iod_ret_t ret, root_ret;
iod_trans_id_t first_tid = 0;
iod_hint_list_t *obj_create_hint = NULL;
hbool_t enable_checksum = FALSE;
herr_t ret_value = SUCCEED;
if(H5Pget_ocpl_enable_checksum(fcpl_id, &enable_checksum) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scope for data integrity checks");
/* root group integrity */
if((cs_scope & H5_CHECKSUM_IOD) && enable_checksum) {
obj_create_hint = (iod_hint_list_t *)malloc(sizeof(iod_hint_list_t) + sizeof(iod_hint_t));
obj_create_hint->num_hint = 1;
obj_create_hint->hint[0].key = "iod_hint_obj_enable_cksum";
}
/* MSC - skip transaction 0 since it can't be persisted */
ret = iod_trans_start(coh, &first_tid, NULL, num_peers, IOD_TRANS_W, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't start transaction 0");
/* Finish the transaction */
ret = iod_trans_finish(coh, first_tid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction 0");
first_tid = 1;
/* Take transaction 1 to create root group */
ret = iod_trans_start(coh, &first_tid, NULL, num_peers, IOD_TRANS_W, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't start transaction 1");
/* create the root group */
root_ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &root_id, NULL);
if(0 == root_ret || -EEXIST == root_ret) {
/* root group has been created, open it */
ret = iod_obj_open_write(coh, root_id, first_tid, NULL, &root_oh.wr_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open root group for write");
ret = iod_obj_open_read(coh, root_id, first_tid, NULL, &root_oh.rd_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open root group for read");
}
else {
HGOTO_ERROR_FF(root_ret, "can't create root group");
}
/* for the process that succeeded in creating the group, create
the scratch pad for it too. */
if(0 == root_ret) {
scratch_pad sp;
iod_kv_t kv;
uint64_t value = 1;
/* create the metadata KV object for the root group */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &mdkv_id, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't create metadata KV object");
/* create the attribute KV object for the root group */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &attrkv_id, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't create attribute KV object");
/* create the KV object to hold each client's indexes for
object OIDs after each trans_finish and file_close */
ret = iod_obj_create(coh, first_tid, obj_create_hint, IOD_OBJ_KV,
NULL, NULL, &oidkv_id, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't create array for OID indexes");
/* set values for the scratch pad object */
sp[0] = mdkv_id;
sp[1] = attrkv_id;
sp[2] = oidkv_id;
sp[3] = IOD_OBJ_INVALID;
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t sp_cs;
sp_cs = H5_checksum_crc64(&sp, sizeof(sp));
/* set scratch pad in root group */
ret = iod_obj_set_scratch(root_oh.wr_oh, first_tid, &sp, &sp_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set scratch pad");
}
else {
ret = iod_obj_set_scratch(root_oh.wr_oh, first_tid, &sp, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set scratch pad");
}
/* Store Metadata in scratch pad */
ret = iod_obj_open_write(coh, mdkv_id, first_tid, NULL, &mdkv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open metadata KV");
/* insert plist metadata */
ret = H5VL_iod_insert_plist(mdkv_oh, first_tid, fcpl_id, cs_scope, NULL, NULL);
if(SUCCEED != ret)
HGOTO_ERROR_FF(ret, "can't insert link count KV value");
kv.value = &value;
kv.value_len = sizeof(uint64_t);
kv.key = (void *)H5VL_IOD_KEY_KV_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_KV_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.key = (void *)H5VL_IOD_KEY_ARRAY_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_ARRAY_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
kv.key = (void *)H5VL_IOD_KEY_BLOB_IDS_INDEX;
kv.key_len = 1 + strlen(H5VL_IOD_KEY_BLOB_IDS_INDEX);
if(cs_scope & H5_CHECKSUM_IOD) {
iod_checksum_t cs[2];
cs[0] = H5_checksum_crc64(kv.key, kv.key_len);
cs[1] = H5_checksum_crc64(kv.value, kv.value_len);
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
else {
ret = iod_kv_set(mdkv_oh, first_tid, NULL, &kv, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't set KV pair in parent");
}
ret = iod_obj_close(mdkv_oh, NULL, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't close root object handle");
}
_root_oh->rd_oh.cookie = root_oh.rd_oh.cookie;
_root_oh->wr_oh.cookie = root_oh.wr_oh.cookie;
/* If the user did not ask to acquire the latest readable version, finish it here */
if(TRUE != acquire) {
/* Finish the transaction */
ret = iod_trans_finish(coh, first_tid, NULL, 0, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't finish transaction 1");
}
done:
if(obj_create_hint) {
free(obj_create_hint);
obj_create_hint = NULL;
}
return ret_value;
}
#endif
#endif /* H5_HAVE_EFF */
|