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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Mohamad Chaarawi <chaarawi@hdfgroup.gov>
* October, 2013
*
* Purpose: Routines to support Query/View objects.
*/
#include "H5VLiod_server.h"
#include "H5Qpublic.h"
#include "H5Vpublic.h"
#ifdef H5_HAVE_EFF
/* entry describing a view object */
typedef struct H5VL_iod_view_entry_t {
H5I_type_t obj_type;
void *token;
size_t token_size;
char *link_name;
char *attr_name;
hid_t selection;
struct H5VL_iod_view_entry_t *next;
} H5VL_iod_view_entry_t;
/* linked list used in constructing a View object */
typedef struct {
size_t num_entries;
H5VL_iod_view_entry_t *head;
H5VL_iod_view_entry_t *tail;
} H5VL_iod_view_list_t;
typedef struct {
H5VL_iod_view_list_t region_list;
H5VL_iod_view_list_t attr_list;
H5VL_iod_view_list_t obj_list;
} H5VL_iod_view_obj_t;
typedef struct {
hid_t query_id;
hid_t vcpl_id;
H5VL_iod_view_obj_t *view;
} H5VL_build_view_t;
/* Enum for Query results */
typedef enum qresult_t {
QFALSE = -1,
QNEUTRAL,
QTRUE
} qresult_t;
static herr_t
H5VL__iod_get_token(iod_handle_t coh, H5I_type_t obj_type, iod_obj_id_t iod_id,
iod_trans_id_t rtid, uint32_t cs_scope, size_t *_token_size, void **_token);
static herr_t
H5VL__iod_apply_query(hid_t qid, hid_t vcpl_id, iod_handle_t coh, iod_obj_id_t obj_id,
iod_trans_id_t rtid, H5I_type_t obj_type,
const char *link_name, const char *attr_name,
size_t num_attrs, char *attr_list[],
uint32_t cs_scope, qresult_t *result, hid_t *region);
static herr_t
H5VL__iod_build_view_cb(iod_handle_t coh, iod_obj_id_t obj_id, iod_trans_id_t rtid,
H5I_type_t obj_type, const char *link_name, const char *attr_name,
uint32_t cs_scope, void *_op_data);
static hid_t
H5VL__iod_get_elmt_region(iod_handle_t coh, iod_obj_id_t dset_id, iod_trans_id_t rtid,
hid_t query_id, hid_t vcpl_id, uint32_t cs_scope);
static void
H5VL__iod_add_entry(H5VL_iod_view_list_t *list, H5VL_iod_view_entry_t* entry);
static herr_t
H5VL__iod_free_view_list(H5VL_iod_view_list_t list);
/*-------------------------------------------------------------------------
* Function: H5VL_iod_server_view_create_cb
*
* Purpose: Create a View from a query on a location in the container.
*
* Return: Success: SUCCEED
* Failure: Negative
*
*-------------------------------------------------------------------------
*/
void
H5VL_iod_server_view_create_cb(AXE_engine_t UNUSED axe_engine,
size_t UNUSED num_n_parents, AXE_task_t UNUSED n_parents[],
size_t UNUSED num_s_parents, AXE_task_t UNUSED s_parents[],
void *_op_data)
{
op_data_t *op_data = (op_data_t *)_op_data;
view_create_in_t *input = (view_create_in_t *)op_data->input;
view_create_out_t output;
iod_handle_t coh = input->coh; /* the container handle */
//iod_handles_t loc_handle = input->loc_oh; /* The handle for current object - could be undefined */
iod_obj_id_t loc_id = input->loc_id; /* The ID of the current location object */
//iod_obj_id_t mdkv_id = input->loc_mdkv_id; /* The ID of the metadata KV of the location */
//iod_obj_id_t attrkv_id = input->loc_attrkv_id; /* The ID of the attribute KV of the location */
H5I_type_t obj_type = input->obj_type;
hid_t query_id = input->query_id;
iod_trans_id_t rtid = input->rcxt_num;
uint32_t cs_scope = input->cs_scope;
hid_t vcpl_id;
size_t i;
H5VL_build_view_t udata;
H5VL_iod_view_entry_t *entry = NULL;
H5VL_iod_view_obj_t *view = NULL;
herr_t ret_value = SUCCEED;
#if H5_EFF_DEBUG
fprintf(stderr, "Start View create on OID %"PRIx64"\n", loc_id);
#endif
if(H5P_DEFAULT == input->vcpl_id)
input->vcpl_id = H5Pcopy(H5P_VIEW_CREATE_DEFAULT);
vcpl_id = input->vcpl_id;
view = (H5VL_iod_view_obj_t *)calloc(1, sizeof(H5VL_iod_view_obj_t));
udata.view = view;
udata.query_id = query_id;
udata.vcpl_id = vcpl_id;
if(H5VL_iod_server_iterate(coh, loc_id, rtid, obj_type, NULL, NULL, cs_scope,
H5VL__iod_build_view_cb, &udata) < 0)
HGOTO_ERROR_FF(FAIL, "can't iterate into container");
output.valid_view = TRUE;
#if H5_EFF_DEBUG
fprintf(stderr, "View has %zu Region Entries\n", view->region_list.num_entries);
fprintf(stderr, "View has %zu Attribute Entries\n", view->attr_list.num_entries);
fprintf(stderr, "View has %zu Object Entries\n", view->obj_list.num_entries);
#endif
output.region_info.count = view->region_list.num_entries;
output.attr_info.count = view->attr_list.num_entries;
output.obj_info.count = view->obj_list.num_entries;
/* collect dataset region results */
if(view->region_list.num_entries) {
output.region_info.tokens = (binary_buf_t *)malloc
(view->region_list.num_entries * sizeof(binary_buf_t));
output.region_info.regions = (hid_t *)malloc
(view->region_list.num_entries * sizeof(hid_t));
entry = view->region_list.head;
for(i=0 ; i<output.region_info.count; i++) {
assert(entry);
output.region_info.tokens[i].buf = entry->token;
output.region_info.tokens[i].buf_size = entry->token_size;
output.region_info.regions[i] = entry->selection;
entry = entry->next;
}
}
/* collect attribute results */
if(view->attr_list.num_entries) {
output.attr_info.tokens = (binary_buf_t *)malloc
(view->attr_list.num_entries * sizeof(binary_buf_t));
entry = view->attr_list.head;
for(i=0 ; i<output.attr_info.count; i++) {
assert(entry);
output.attr_info.tokens[i].buf = entry->token;
output.attr_info.tokens[i].buf_size = entry->token_size;
entry = entry->next;
}
}
/* collect object results */
if(view->obj_list.num_entries) {
output.obj_info.tokens = (binary_buf_t *)malloc
(view->obj_list.num_entries * sizeof(binary_buf_t));
entry = view->obj_list.head;
for(i=0 ; i<output.obj_info.count; i++) {
assert(entry);
output.obj_info.tokens[i].buf = entry->token;
output.obj_info.tokens[i].buf_size = entry->token_size;
entry = entry->next;
}
}
done:
#if H5_EFF_DEBUG
fprintf(stderr, "Done with View Create, sending %d response to client \n", ret_value);
#endif
if(HG_SUCCESS != HG_Handler_start_output(op_data->hg_handle, &output))
HDONE_ERROR_FF(FAIL, "unable to send output to client");
if(output.region_info.count) {
free(output.region_info.tokens);
free(output.region_info.regions);
}
if(output.attr_info.count) {
free(output.attr_info.tokens);
}
if(output.obj_info.count) {
free(output.obj_info.tokens);
}
H5VL__iod_free_view_list(view->region_list);
H5VL__iod_free_view_list(view->attr_list);
H5VL__iod_free_view_list(view->obj_list);
if(view)
free(view);
HG_Handler_free_input(op_data->hg_handle, input);
HG_Handler_free(op_data->hg_handle);
input = (view_create_in_t *)H5MM_xfree(input);
op_data = (op_data_t *)H5MM_xfree(op_data);
} /* end H5VL_iod_server_view_create_cb() */
static herr_t
H5VL__iod_build_view_cb(iod_handle_t coh, iod_obj_id_t obj_id, iod_trans_id_t rtid,
H5I_type_t obj_type, const char *link_name, const char *attr_name,
uint32_t cs_scope, void *_op_data)
{
H5VL_build_view_t *op_data = (H5VL_build_view_t *)_op_data;
qresult_t result = QFALSE;
herr_t ret;
hid_t region = FAIL;
char **attr_list = NULL;
int num_attrs = 0;
int i;
H5VL_iod_view_obj_t *view = op_data->view;
herr_t ret_value = SUCCEED;
#if H5_EFF_DEBUG
fprintf(stderr, "Building Query on OID %"PRIx64"\n", obj_id);
#endif
/* iterate over all attributes of that object */
{
iod_handle_t obj_oh;
scratch_pad sp;
iod_checksum_t sp_cs = 0;
if (iod_obj_open_read(coh, obj_id, rtid, NULL, &obj_oh, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't open current group");
ret = iod_obj_get_scratch(obj_oh, rtid, &sp, &sp_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't get scratch pad for object");
if(sp_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* verify scratch pad integrity */
if(H5VL_iod_verify_scratch_pad(&sp, sp_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Scratch Pad failed integrity check");
}
/* if attribute KV exists, iterate over attributes */
if(IOD_OBJ_INVALID != sp[1]) {
iod_handle_t attr_kv_oh;
/* open the attribute KV in scratch pad */
ret = iod_obj_open_read(coh, sp[1], rtid, NULL, &attr_kv_oh, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "can't open attribute KV");
ret = iod_kv_get_num(attr_kv_oh, rtid, &num_attrs, NULL);
if(ret != 0)
HGOTO_ERROR_FF(FAIL, "can't get number of attributes");
if(0 != num_attrs) {
iod_kv_params_t *kvs = NULL;
iod_kv_t *kv = NULL;
iod_checksum_t *oid_cs = NULL;
iod_ret_t *oid_ret = NULL;
attr_list = (char **)malloc(sizeof(char*) * (size_t)num_attrs);
kvs = (iod_kv_params_t *)malloc(sizeof(iod_kv_params_t) * (size_t)num_attrs);
kv = (iod_kv_t *)malloc(sizeof(iod_kv_t) * (size_t)num_attrs);
oid_cs = (iod_checksum_t *)malloc(sizeof(iod_checksum_t) * (size_t)num_attrs);
oid_ret = (iod_ret_t *)malloc(sizeof(iod_ret_t) * (size_t)num_attrs);
for(i=0 ; i<num_attrs ; i++) {
kv[i].key = malloc(IOD_KV_KEY_MAXLEN);
kv[i].key_len = IOD_KV_KEY_MAXLEN;
kvs[i].kv = &kv[i];
kvs[i].cs = &oid_cs[i];
kvs[i].ret = &oid_ret[i];
}
ret = iod_kv_list_key(attr_kv_oh, rtid, NULL, 0, &num_attrs, kvs, NULL);
if(ret != 0)
HGOTO_ERROR_FF(FAIL, "can't get list of keys");
for(i=0 ; i<num_attrs ; i++) {
iod_obj_id_t oid;
H5VL_iod_link_t value;
/* lookup object in the current group */
ret = H5VL_iod_get_metadata(attr_kv_oh, rtid, H5VL_IOD_LINK,
(char *)(kv[i].key), cs_scope, NULL, &value);
if(SUCCEED != ret)
HGOTO_ERROR_FF(ret, "failed to retrieve link value");
if(H5L_TYPE_SOFT == value.link_type) {
continue;
}
else
oid = value.u.iod_id;
#if H5_EFF_DEBUG
fprintf(stderr, "Iterating into Attribute %s OID %"PRIx64"\n",
((char *)kv[i].key), oid);
#endif
ret = H5VL__iod_build_view_cb(coh, oid, rtid, H5I_ATTR, link_name,
((char *)kv[i].key), cs_scope, op_data);
if(ret != 0)
HGOTO_ERROR_FF(FAIL, "can't apply iterate callback on current attribute");
attr_list[i] = strdup(((char *)kv[i].key));
}
for(i=0 ; i<num_attrs ; i++) {
free(kv[i].key);
}
free(kv);
free(oid_cs);
free(oid_ret);
free(kvs);
}
iod_obj_close(attr_kv_oh, NULL, NULL);
}
ret = iod_obj_close(obj_oh, NULL, NULL);
if(ret != 0)
HGOTO_ERROR_FF(ret, "can't close object");
}
ret = H5VL__iod_apply_query(op_data->query_id, op_data->vcpl_id,
coh, obj_id, rtid, obj_type,
link_name, attr_name, (size_t)num_attrs, attr_list,
cs_scope, &result, ®ion);
if(ret != 0)
HGOTO_ERROR_FF(ret, "Error applying query");
for(i=0; i<num_attrs; i++)
free(attr_list[i]);
if(attr_list)
free(attr_list);
if(result > 0) {
H5VL_iod_view_entry_t *entry = NULL;
entry = (H5VL_iod_view_entry_t *)calloc(1, sizeof(H5VL_iod_view_entry_t));
entry->obj_type = obj_type;
entry->selection = region;
if(link_name)
entry->link_name = strdup(link_name);
if(attr_name)
entry->attr_name = strdup(attr_name);
if(H5VL__iod_get_token(coh, obj_type, obj_id, rtid, cs_scope,
&entry->token_size, &entry->token) < 0)
HGOTO_ERROR_FF(FAIL, "failed to get object token");
entry->next = NULL;
/* add entry to view linked list */
if(region != FAIL)
H5VL__iod_add_entry(&view->region_list, entry);
else if(attr_name)
H5VL__iod_add_entry(&view->attr_list, entry);
else
H5VL__iod_add_entry(&view->obj_list, entry);
}
done:
return ret_value;
}
static herr_t
H5VL__iod_apply_query(hid_t qid, hid_t vcpl_id, iod_handle_t coh, iod_obj_id_t obj_id,
iod_trans_id_t rtid, H5I_type_t obj_type,
const char *link_name, const char *attr_name,
size_t num_attrs, char *attr_list[],
uint32_t cs_scope, qresult_t *result, hid_t *region)
{
H5Q_combine_op_t comb_type;
H5Q_match_op_t match_op;
H5Q_type_t q_type;
herr_t ret;
herr_t ret_value = SUCCEED;
*result = QFALSE;
if(H5Qget_combine_op(qid, &comb_type) < 0)
HGOTO_ERROR_FF(FAIL, "can't get query op type");
if(H5Q_SINGLETON == comb_type) {
if(H5Qget_match_info(qid, &q_type, &match_op) < 0)
HGOTO_ERROR_FF(FAIL, "can't get query info");
if(H5Q_TYPE_DATA_ELEM == q_type) {
if(H5I_DATASET == obj_type) {
hid_t sid;
/* add object to view with region if region is not NONE */
if((sid = H5VL__iod_get_elmt_region(coh, obj_id, rtid, qid, vcpl_id, cs_scope)) < 0)
HGOTO_ERROR_FF(FAIL, "can't get region from query");
fprintf(stderr, "Found %zu Entries in subquery\n", H5Sget_select_npoints(sid));
if(H5Sget_select_npoints(sid) > 0) {
*result = QTRUE;
*region = sid;
}
else {
if(H5Sclose(sid) < 0)
HGOTO_ERROR_FF(FAIL, "unable to release dataspace");
}
}
}
else if(H5Q_TYPE_ATTR_VALUE == q_type) {
/* add the attribute to the view if any of the attribute values matches the query */
if(H5I_ATTR == obj_type) {
hid_t sid;
/* add object to view with region if region is not NONE */
if((sid = H5VL__iod_get_elmt_region(coh, obj_id, rtid, qid, vcpl_id, cs_scope)) < 0)
HGOTO_ERROR_FF(FAIL, "can't get region from query");
if(H5Sget_select_npoints(sid) > 0) {
*result = QTRUE;
}
if(H5Sclose(sid) < 0)
HGOTO_ERROR_FF(FAIL, "unable to release dataspace");
}
}
else if(H5Q_TYPE_LINK_NAME == q_type) {
hbool_t temp_result;
if(H5Qapply(qid, &temp_result, link_name) < 0)
HGOTO_ERROR_FF(FAIL, "can't apply link name query");
if(TRUE == temp_result && H5I_ATTR == obj_type)
*result = QNEUTRAL;
else if(TRUE == temp_result)
*result = QTRUE;
}
else if(H5Q_TYPE_ATTR_NAME == q_type) {
size_t i;
hbool_t temp_result;
for (i=0 ; i<num_attrs ; i++) {
if(H5Qapply(qid, &temp_result, attr_list[i]) < 0)
HGOTO_ERROR_FF(FAIL, "can't apply attr name query");
if(TRUE == temp_result) {
*result = QTRUE;
break;
}
}
if(H5I_ATTR == obj_type && attr_name) {
if(H5Qapply(qid, &temp_result, attr_name) < 0)
HGOTO_ERROR_FF(FAIL, "can't apply attr name query");
if(TRUE == temp_result)
*result = QNEUTRAL;
}
}
else
HGOTO_ERROR_FF(FAIL, "invalid query type");
}
else {
qresult_t result1, result2;
hid_t qid1, qid2;
hid_t sid1 = FAIL , sid2 = FAIL;
if(H5Qget_components(qid, &qid1, &qid2) < 0)
HGOTO_ERROR_FF(FAIL, "can't get query components");
ret = H5VL__iod_apply_query(qid1, vcpl_id, coh, obj_id, rtid,
obj_type, link_name, attr_name,
num_attrs, attr_list, cs_scope,
&result1, &sid1);
if(ret != 0)
HGOTO_ERROR_FF(ret, "Error applying query");
/* if the result of the first query is empty,
no need to apply the second one if they are anded */
if(result1 == QFALSE && H5Q_COMBINE_AND == comb_type) {
*result = QFALSE;
}
else {
ret = H5VL__iod_apply_query(qid2, vcpl_id, coh, obj_id, rtid,
obj_type, link_name, attr_name,
num_attrs, attr_list, cs_scope,
&result2, &sid2);
if(ret != 0)
HGOTO_ERROR_FF(ret, "Error applying query");
/* combine result1 and result2 */
if(H5Q_COMBINE_AND == comb_type) {
fprintf(stderr, "ANDing %d and %d\n", result1, result2);
*result = result1 + result2;
if(sid1!=FAIL && sid2!=FAIL) {
/* MSC - AND the selections when API is available */
*region = H5Scopy(sid1);
}
else if(sid1!=FAIL)
*region = H5Scopy(sid1);
else if (sid2!=FAIL)
*region = H5Scopy(sid2);
}
else if(H5Q_COMBINE_OR == comb_type) {
fprintf(stderr, "ORing %d and %d\n", result1, result2);
*result = result1 + result2 + 1;
if(sid1!=FAIL && sid2!=FAIL) {
/* MSC - OR the selections when API is available */
*region = H5Scopy(sid2);
}
else if(sid1!=FAIL)
*region = H5Scopy(sid1);
else if (sid2!=FAIL)
*region = H5Scopy(sid2);
}
else
HGOTO_ERROR_FF(FAIL, "invalid query combine OP");
}
if(sid1!=FAIL && H5Sclose(sid1) < 0)
HGOTO_ERROR_FF(FAIL, "unable to release dataspace");
if(sid2!=FAIL && H5Sclose(sid2) < 0)
HGOTO_ERROR_FF(FAIL, "unable to release dataspace");
}
done:
return ret_value;
} /* H5VL__iod_apply_query */
static herr_t
H5VL__iod_get_token(iod_handle_t coh, H5I_type_t obj_type, iod_obj_id_t obj_id,
iod_trans_id_t rtid, uint32_t cs_scope,
size_t *_token_size, void **_token)
{
size_t dt_size = 0, space_size = 0, plist_size = 0;
size_t keytype_size = 0, valtype_size;
iod_handle_t obj_oh, mdkv_oh;
hid_t id1, id2, cpl_id;
void *token = NULL;
uint8_t *buf_ptr = NULL;
size_t token_size = 0;
void *dt_buf = NULL;
scratch_pad sp;
iod_checksum_t sp_cs;
iod_ret_t ret;
herr_t ret_value = SUCCEED;
/* open the object */
if(iod_obj_open_read(coh, obj_id, rtid, NULL, &obj_oh, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't open object fo read");
/* get scratch pad */
if(iod_obj_get_scratch(obj_oh, rtid, &sp, &sp_cs, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scratch pad for object");
if(sp_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* verify scratch pad integrity */
if(H5VL_iod_verify_scratch_pad(&sp, sp_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Scratch Pad failed integrity check");
}
/* open the metadata scratch pad */
if(iod_obj_open_read(coh, sp[0], rtid, NULL, &mdkv_oh, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't open metadata KV");
token_size = sizeof(iod_obj_id_t)*3 + sizeof(H5I_type_t);
if(H5I_FILE == obj_type)
obj_type = H5I_GROUP;
switch(obj_type) {
case H5I_GROUP:
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_PLIST, H5VL_IOD_KEY_OBJ_CPL,
cs_scope, NULL, &cpl_id) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dcpl");
if(H5Pencode(cpl_id, NULL, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
token_size += plist_size + sizeof(size_t);
break;
case H5I_DATASET:
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATATYPE,
H5VL_IOD_KEY_OBJ_DATATYPE,
cs_scope, NULL, &id1) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve datatype");
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATASPACE,
H5VL_IOD_KEY_OBJ_DATASPACE,
cs_scope, NULL, &id2) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dataspace");
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_PLIST,
H5VL_IOD_KEY_OBJ_CPL,
cs_scope, NULL, &cpl_id) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dcpl");
if(H5Pencode(cpl_id, NULL, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
if(H5Tencode(id1, NULL, &dt_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
if(H5Sencode(id2, NULL, &space_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode dataspace");
token_size += plist_size + dt_size + space_size + sizeof(size_t)*3;
break;
case H5I_ATTR:
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATATYPE,
H5VL_IOD_KEY_OBJ_DATATYPE,
cs_scope, NULL, &id1) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve datatype");
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATASPACE,
H5VL_IOD_KEY_OBJ_DATASPACE,
cs_scope, NULL, &id2) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dataspace");
if(H5Tencode(id1, NULL, &dt_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
if(H5Sencode(id2, NULL, &space_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode dataspace");
token_size += dt_size + space_size + sizeof(size_t)*3;
break;
case H5I_DATATYPE:
{
iod_mem_desc_t *mem_desc = NULL; /* memory descriptor used for reading */
iod_blob_iodesc_t *file_desc = NULL; /* file descriptor used to write */
iod_checksum_t dt_cs = 0, blob_cs = 0;
iod_size_t key_size, val_size;
iod_checksum_t iod_cs[2];
key_size = 1 + strlen(H5VL_IOD_KEY_DTYPE_SIZE);
val_size = sizeof(iod_size_t);
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_PLIST,
H5VL_IOD_KEY_OBJ_CPL,
cs_scope, NULL, &cpl_id) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dcpl");
/* retrieve blob size metadata from scratch pad */
ret = iod_kv_get_value(mdkv_oh, rtid, H5VL_IOD_KEY_DTYPE_SIZE, key_size,
&dt_size, &val_size, iod_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "datatype size lookup failed");
if(cs_scope & H5_CHECKSUM_IOD) {
if(H5VL_iod_verify_kv_pair(H5VL_IOD_KEY_DTYPE_SIZE, key_size,
&dt_size, val_size, iod_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Corruption detected when reading metadata from IOD");
}
if(NULL == (dt_buf = malloc(dt_size)))
HGOTO_ERROR_FF(FAIL, "can't allocate BLOB read buffer");
/* create memory descriptor for reading */
mem_desc = (iod_mem_desc_t *)malloc(sizeof(iod_mem_desc_t) +
sizeof(iod_mem_frag_t));
mem_desc->nfrag = 1;
mem_desc->frag[0].addr = dt_buf;
mem_desc->frag[0].len = (iod_size_t)dt_size;
/* create file descriptor for writing */
file_desc = (iod_blob_iodesc_t *)malloc(sizeof(iod_blob_iodesc_t) +
sizeof(iod_blob_iofrag_t));
file_desc->nfrag = 1;
file_desc->frag[0].offset = 0;
file_desc->frag[0].len = (iod_size_t)dt_size;
/* read the serialized type value from the BLOB object */
ret = iod_blob_read(obj_oh, rtid, NULL, mem_desc, file_desc,
&blob_cs, NULL);
if(ret < 0)
HGOTO_ERROR_FF(ret, "unable to read BLOB object");
if(blob_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* calculate a checksum for the datatype */
dt_cs = H5_checksum_crc64(dt_buf, dt_size);
/* Verify checksum against one given by IOD */
if(blob_cs != dt_cs)
HGOTO_ERROR_FF(FAIL, "Data Corruption detected when reading datatype");
}
if(H5Pencode(cpl_id, NULL, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
token_size += plist_size + dt_size + sizeof(size_t)*2;
free(mem_desc);
free(file_desc);
break;
}
case H5I_MAP:
ret = H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_PLIST,
H5VL_IOD_KEY_OBJ_CPL,
cs_scope, NULL, &cpl_id);
if(ret != SUCCEED)
HGOTO_ERROR_FF(ret, "failed to retrieve mcpl");
ret = H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATATYPE,
H5VL_IOD_KEY_MAP_KEY_TYPE,
cs_scope, NULL, &id1);
if(ret != SUCCEED)
HGOTO_ERROR_FF(ret, "failed to retrieve map keytype");
ret = H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATATYPE,
H5VL_IOD_KEY_MAP_VALUE_TYPE,
cs_scope, NULL, &id2);
if(ret != SUCCEED)
HGOTO_ERROR_FF(ret, "failed to retrieve map valtype");
if(H5Pencode(cpl_id, NULL, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
if(H5Tencode(id1, NULL, &keytype_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
if(H5Tencode(id2, NULL, &valtype_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
token_size += plist_size + keytype_size + valtype_size + sizeof(size_t)*3;
break;
default:
HGOTO_ERROR_FF(FAIL, "Invalid object");
}
if(iod_obj_close(mdkv_oh, NULL, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't close iod object");
if(iod_obj_close(obj_oh, NULL, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't close iod object");
token = calloc(1, token_size);
buf_ptr = (uint8_t *)token;
HDmemcpy(buf_ptr, &obj_id, sizeof(iod_obj_id_t));
buf_ptr += sizeof(iod_obj_id_t);
HDmemcpy(buf_ptr, &sp[0], sizeof(iod_obj_id_t));
buf_ptr += sizeof(iod_obj_id_t);
HDmemcpy(buf_ptr, &sp[1], sizeof(iod_obj_id_t));
buf_ptr += sizeof(iod_obj_id_t);
HDmemcpy(buf_ptr, &obj_type, sizeof(H5I_type_t));
buf_ptr += sizeof(H5I_type_t);
switch(obj_type) {
case H5I_GROUP:
HDmemcpy(buf_ptr, &plist_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Pencode(cpl_id, buf_ptr, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
buf_ptr += plist_size;
break;
case H5I_ATTR:
HDmemcpy(buf_ptr, &dt_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Tencode(id1, buf_ptr, &dt_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
buf_ptr += dt_size;
HDmemcpy(buf_ptr, &space_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Sencode(id2, buf_ptr, &space_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode dataspace");
buf_ptr += space_size;
break;
case H5I_DATASET:
HDmemcpy(buf_ptr, &plist_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Pencode(cpl_id, buf_ptr, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
buf_ptr += plist_size;
HDmemcpy(buf_ptr, &dt_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Tencode(id1, buf_ptr, &dt_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
buf_ptr += dt_size;
HDmemcpy(buf_ptr, &space_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Sencode(id2, buf_ptr, &space_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode dataspace");
buf_ptr += space_size;
break;
case H5I_DATATYPE:
HDmemcpy(buf_ptr, &plist_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Pencode(cpl_id, buf_ptr, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
buf_ptr += plist_size;
HDmemcpy(buf_ptr, &dt_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
HDmemcpy(buf_ptr, dt_buf, dt_size);
buf_ptr += dt_size;
break;
case H5I_MAP:
HDmemcpy(buf_ptr, &plist_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Pencode(cpl_id, buf_ptr, &plist_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode plist");
buf_ptr += plist_size;
HDmemcpy(buf_ptr, &keytype_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Tencode(id1, buf_ptr, &keytype_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
buf_ptr += keytype_size;
HDmemcpy(buf_ptr, &valtype_size, sizeof(size_t));
buf_ptr += sizeof(size_t);
if(H5Tencode(id2, buf_ptr, &valtype_size) < 0)
HGOTO_ERROR_FF(FAIL, "can't encode datatype");
buf_ptr += valtype_size;
break;
default:
HGOTO_ERROR_FF(FAIL, "Invalid object");
}
*_token_size = token_size;
*_token = token;
done:
if(dt_buf) {
free(dt_buf);
dt_buf = NULL;
}
return ret_value;
} /* end H5VL__iod_get_token() */
static hid_t
H5VL__iod_get_elmt_region(iod_handle_t coh, iod_obj_id_t dset_id, iod_trans_id_t rtid,
hid_t query_id, hid_t vcpl_id, uint32_t cs_scope)
{
iod_handle_t dset_oh, mdkv_oh;
scratch_pad sp;
size_t nelmts;
size_t elmt_size=0, buf_size=0;
H5VL__iod_get_query_data_t udata;
void *buf = NULL;
hid_t type_id=FAIL, space_id=FAIL, dset_space_id=FAIL;
hbool_t use_region_scope = TRUE;
iod_checksum_t sp_cs = 0;
hid_t ret_value = FAIL;
/* Check if VCPL has a dataspace specified; otherwise, read the entire dataset. */
if(H5Pget_view_elmt_scope(vcpl_id, &space_id) < 0)
HGOTO_ERROR_FF(FAIL, "can't retrieve vcpl region scope");;
/* open the array object */
if(iod_obj_open_read(coh, dset_id, rtid, NULL, &dset_oh, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't open array object fo read");
/* get scratch pad */
if(iod_obj_get_scratch(dset_oh, rtid, &sp, &sp_cs, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't get scratch pad for object");
if(sp_cs && (cs_scope & H5_CHECKSUM_IOD)) {
/* verify scratch pad integrity */
if(H5VL_iod_verify_scratch_pad(&sp, sp_cs) < 0)
HGOTO_ERROR_FF(FAIL, "Scratch Pad failed integrity check");
}
/* open the metadata scratch pad */
if(iod_obj_open_read(coh, sp[0], rtid, NULL, &mdkv_oh, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't open scratch pad");
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATATYPE,
H5VL_IOD_KEY_OBJ_DATATYPE,
7, NULL, &type_id) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve datatype");
if(H5VL_iod_get_metadata(mdkv_oh, rtid, H5VL_IOD_DATASPACE,
H5VL_IOD_KEY_OBJ_DATASPACE,
7, NULL, &dset_space_id) < 0)
HGOTO_ERROR_FF(FAIL, "failed to retrieve dataspace");
if(space_id < 0) {
use_region_scope = FALSE;
space_id = dset_space_id;
}
if(iod_obj_close(mdkv_oh, NULL, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't close iod object");
nelmts = (size_t) H5Sget_select_npoints(space_id);
elmt_size = H5Tget_size(type_id);
buf_size = nelmts * elmt_size;
/* allocate buffer to hold data */
if(NULL == (buf = malloc(buf_size)))
HGOTO_ERROR_FF(FAIL, "can't allocate read buffer");
/* read the data selection from IOD. */
elmt_size = H5Tget_size(type_id);
if(H5VL__iod_server_final_io(dset_oh, space_id, elmt_size, FALSE,
buf, buf_size, (uint64_t)0, 0, rtid) < 0)
HGOTO_ERROR_FF(FAIL, "can't read from array object");
if(iod_obj_close(dset_oh, NULL, NULL) < 0)
HGOTO_ERROR_FF(FAIL, "can't close iod object");
if(FAIL == (udata.space_query = H5Scopy(space_id)))
HGOTO_ERROR_FF(FAIL, "unable to copy dataspace");
if(H5Sselect_none(udata.space_query) < 0)
HGOTO_ERROR_FF(FAIL, "unable to reset selection");
udata.query_id = query_id;
udata.num_elmts = 0;
/* iterate over every element and apply the query on it. If the
query is not satisfied, then remove it from the query selection */
if(H5Diterate(buf, type_id, space_id, H5VL__iod_get_query_data_cb, &udata) < 0)
HGOTO_ERROR_FF(FAIL, "failed to apply query on Dataset");
ret_value = udata.space_query;
done:
if(space_id!=FAIL && H5Sclose(space_id) < 0)
HDONE_ERROR_FF(FAIL, "unable to release dataspace");
if(use_region_scope) {
if(dset_space_id!=FAIL && H5Sclose(dset_space_id) < 0)
HDONE_ERROR_FF(FAIL, "unable to release dataspace");
}
if(type_id!=FAIL && H5Tclose(type_id) < 0)
HDONE_ERROR_FF(FAIL, "unable to release datatype")
if(buf != NULL)
free(buf);
return ret_value;
} /* end H5VL__iod_get_elmt_region() */
static void
H5VL__iod_add_entry(H5VL_iod_view_list_t *list, H5VL_iod_view_entry_t* entry)
{
if(list->head == NULL) {
list->head = entry;
list->tail = list->head;
}
else {
list->tail->next = entry;
list->tail = entry;
}
list->num_entries ++;
return;
}
static herr_t
H5VL__iod_free_view_list(H5VL_iod_view_list_t list)
{
size_t i;
H5VL_iod_view_entry_t *entry, *next = NULL;
herr_t ret_value = SUCCEED;
entry = list.head;
for(i=0 ; i<list.num_entries ; i++) {
assert(entry);
free(entry->token);
entry->token = NULL;
if(entry->link_name) {
free(entry->link_name);
entry->link_name = NULL;
}
if(entry->attr_name) {
free(entry->attr_name);
entry->attr_name = NULL;
}
if(FAIL != entry->selection) {
if(H5Sclose(entry->selection) < 0)
HGOTO_ERROR_FF(FAIL, "can't close dataspace");
}
next = entry->next;
entry->next = NULL;
free(entry);
entry = next;
}
list.head = NULL;
list.tail = NULL;
done:
return ret_value;
}
#endif /* H5_HAVE_EFF */
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