1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
1306
1307
1308
1309
1310
1311
1312
1313
1314
1315
1316
1317
1318
1319
1320
1321
1322
1323
1324
1325
1326
1327
1328
1329
1330
1331
1332
1333
1334
1335
1336
1337
1338
1339
1340
1341
1342
1343
1344
1345
1346
1347
1348
1349
1350
1351
1352
1353
1354
1355
1356
1357
1358
1359
1360
1361
1362
1363
1364
1365
1366
1367
1368
1369
1370
1371
1372
1373
1374
1375
1376
1377
1378
1379
1380
1381
1382
1383
1384
1385
1386
1387
1388
1389
1390
1391
1392
1393
1394
1395
1396
1397
1398
1399
1400
1401
1402
1403
1404
1405
1406
1407
1408
1409
1410
1411
1412
1413
1414
1415
1416
1417
1418
1419
1420
1421
1422
1423
1424
1425
1426
1427
1428
1429
1430
1431
1432
1433
1434
1435
1436
1437
1438
1439
1440
1441
1442
1443
1444
1445
1446
1447
1448
1449
1450
1451
1452
1453
1454
1455
1456
1457
1458
1459
1460
1461
1462
1463
1464
1465
1466
1467
1468
1469
1470
1471
1472
1473
1474
1475
1476
1477
1478
1479
1480
1481
1482
1483
1484
1485
1486
1487
1488
1489
1490
1491
1492
1493
1494
1495
1496
1497
1498
1499
1500
1501
1502
1503
1504
1505
1506
1507
1508
1509
1510
1511
1512
1513
1514
1515
1516
1517
1518
1519
1520
1521
1522
1523
1524
1525
1526
1527
1528
1529
1530
1531
1532
1533
1534
1535
1536
1537
1538
1539
1540
1541
1542
1543
1544
1545
1546
1547
1548
1549
1550
1551
1552
1553
1554
1555
1556
1557
1558
1559
1560
1561
1562
1563
1564
1565
1566
1567
1568
1569
1570
1571
1572
1573
1574
1575
1576
1577
1578
1579
1580
1581
1582
1583
1584
1585
1586
1587
1588
1589
1590
1591
1592
1593
1594
1595
1596
1597
1598
1599
1600
1601
1602
1603
1604
1605
1606
1607
1608
1609
1610
1611
1612
1613
1614
1615
1616
1617
1618
1619
1620
1621
1622
1623
1624
1625
1626
1627
1628
1629
1630
1631
1632
1633
1634
1635
1636
1637
1638
1639
1640
1641
1642
1643
1644
1645
1646
1647
1648
1649
1650
1651
1652
1653
1654
1655
1656
1657
1658
1659
1660
1661
1662
1663
1664
1665
1666
1667
1668
1669
1670
1671
1672
1673
1674
1675
1676
1677
1678
1679
1680
1681
1682
1683
1684
1685
1686
1687
1688
1689
1690
1691
1692
1693
1694
1695
1696
1697
1698
1699
1700
1701
1702
1703
1704
1705
1706
1707
1708
1709
1710
1711
1712
1713
1714
1715
1716
1717
1718
1719
1720
1721
1722
1723
1724
1725
1726
1727
1728
1729
1730
1731
1732
1733
1734
1735
1736
1737
1738
1739
1740
1741
1742
1743
1744
1745
1746
1747
1748
1749
1750
1751
1752
1753
1754
1755
1756
1757
1758
1759
1760
1761
1762
1763
1764
1765
1766
1767
1768
1769
1770
1771
1772
1773
1774
1775
1776
1777
1778
1779
1780
1781
1782
1783
1784
1785
1786
1787
1788
1789
1790
1791
1792
1793
1794
1795
1796
1797
1798
1799
1800
1801
1802
1803
1804
1805
1806
1807
1808
1809
1810
1811
1812
1813
1814
1815
1816
1817
1818
1819
1820
1821
1822
1823
1824
1825
1826
1827
1828
1829
1830
1831
1832
1833
1834
1835
1836
1837
1838
1839
1840
1841
1842
1843
1844
1845
1846
1847
1848
1849
1850
1851
1852
1853
1854
1855
1856
1857
1858
1859
1860
1861
1862
1863
1864
1865
1866
1867
1868
1869
1870
1871
1872
1873
1874
1875
1876
1877
1878
1879
1880
1881
1882
1883
1884
1885
1886
1887
1888
1889
1890
1891
1892
1893
1894
1895
1896
1897
1898
1899
1900
1901
1902
1903
1904
1905
1906
1907
1908
1909
1910
1911
1912
1913
1914
1915
1916
1917
1918
1919
1920
1921
1922
1923
1924
1925
1926
1927
1928
1929
1930
1931
1932
1933
1934
1935
1936
1937
1938
1939
1940
1941
1942
1943
1944
1945
1946
1947
1948
1949
1950
1951
1952
1953
1954
1955
1956
1957
1958
1959
1960
1961
1962
1963
1964
1965
1966
1967
1968
1969
1970
1971
1972
1973
1974
1975
1976
1977
1978
1979
1980
1981
1982
1983
1984
1985
1986
1987
1988
1989
1990
1991
1992
1993
1994
1995
1996
1997
1998
1999
2000
2001
2002
2003
2004
2005
2006
2007
2008
2009
2010
2011
2012
2013
2014
2015
2016
2017
2018
2019
2020
2021
2022
2023
2024
2025
2026
2027
2028
2029
2030
2031
2032
2033
2034
2035
2036
2037
2038
2039
2040
2041
2042
2043
2044
2045
2046
2047
2048
2049
2050
2051
2052
2053
2054
2055
2056
2057
2058
2059
2060
2061
2062
2063
2064
2065
2066
2067
2068
2069
2070
2071
2072
2073
2074
2075
2076
2077
2078
2079
2080
2081
2082
2083
2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
2095
2096
2097
2098
2099
2100
2101
2102
2103
2104
2105
2106
2107
2108
2109
2110
2111
2112
2113
2114
2115
2116
2117
2118
2119
2120
2121
2122
2123
2124
2125
2126
2127
2128
2129
2130
2131
2132
2133
2134
2135
2136
2137
2138
2139
2140
2141
2142
2143
2144
2145
2146
2147
2148
2149
2150
2151
2152
2153
2154
2155
2156
2157
2158
2159
2160
2161
2162
2163
2164
2165
2166
2167
2168
2169
2170
2171
2172
2173
2174
2175
2176
2177
2178
2179
2180
2181
2182
2183
2184
2185
2186
2187
2188
2189
2190
2191
2192
2193
2194
2195
2196
2197
2198
2199
2200
2201
2202
2203
2204
2205
2206
2207
2208
2209
2210
2211
2212
2213
2214
2215
2216
2217
2218
2219
2220
2221
2222
2223
2224
2225
2226
2227
2228
2229
2230
2231
2232
2233
2234
2235
2236
2237
2238
2239
2240
2241
2242
2243
2244
2245
2246
2247
2248
2249
2250
2251
2252
2253
2254
2255
2256
2257
2258
2259
2260
2261
2262
2263
2264
2265
2266
2267
2268
2269
2270
2271
2272
2273
2274
2275
2276
2277
2278
2279
2280
2281
2282
2283
2284
2285
2286
2287
2288
2289
2290
2291
2292
2293
2294
2295
2296
2297
2298
2299
2300
2301
2302
2303
2304
2305
2306
2307
2308
2309
2310
2311
2312
2313
2314
2315
2316
2317
2318
2319
2320
2321
2322
2323
2324
2325
2326
2327
2328
2329
2330
2331
2332
2333
2334
2335
2336
2337
2338
2339
2340
2341
2342
2343
2344
2345
2346
2347
2348
2349
2350
2351
2352
2353
2354
2355
2356
2357
2358
2359
2360
2361
2362
2363
2364
2365
2366
2367
2368
2369
2370
2371
2372
2373
2374
2375
2376
2377
2378
2379
2380
2381
2382
2383
2384
2385
2386
2387
2388
2389
2390
2391
2392
2393
2394
2395
2396
2397
2398
2399
2400
2401
2402
2403
2404
2405
2406
2407
2408
2409
2410
2411
2412
2413
2414
2415
2416
2417
2418
2419
2420
2421
2422
2423
2424
2425
2426
2427
2428
2429
2430
2431
2432
2433
2434
2435
2436
2437
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Mohamad Chaarawi <chaarawi@hdfgroup.gov>
* January, 2012
*
* Purpose: The native VOL plugin where access is to a single HDF5 file
* using HDF5 VFDs.
*/
#define H5A_PACKAGE /*suppress error about including H5Apkg */
#define H5D_PACKAGE /*suppress error about including H5Dpkg */
#define H5F_PACKAGE /*suppress error about including H5Fpkg */
#define H5G_PACKAGE /*suppress error about including H5Gpkg */
#define H5L_PACKAGE /*suppress error about including H5Lpkg */
#define H5O_PACKAGE /*suppress error about including H5Opkg */
#define H5T_PACKAGE /*suppress error about including H5Tpkg */
/* Interface initialization */
#define H5_INTERFACE_INIT_FUNC H5VL_native_init_interface
#include "H5private.h" /* Generic Functions */
#include "H5Apkg.h" /* Attribute pkg */
#include "H5Aprivate.h" /* Attributes */
#include "H5Dpkg.h" /* Dataset pkg */
#include "H5Dprivate.h" /* Datasets */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fprivate.h" /* File access */
#include "H5Fpkg.h" /* File pkg */
#include "H5Gpkg.h" /* Groups */
#include "H5HGprivate.h" /* Global Heaps */
#include "H5Iprivate.h" /* IDs */
#include "H5Lprivate.h" /* links */
#include "H5Lpkg.h" /* links headers */
#include "H5MFprivate.h" /* File memory management */
#include "H5MMprivate.h" /* Memory management */
#include "H5Opkg.h" /* Object headers */
#include "H5Pprivate.h" /* Property lists */
#include "H5SMprivate.h" /* Shared Object Header Messages */
#include "H5Tpkg.h" /* Datatypes */
#include "H5VLprivate.h" /* VOL plugins */
#include "H5VLnative.h" /* Native VOL plugin */
/* The driver identification number, initialized at runtime */
static hid_t H5VL_NATIVE_g = 0;
/* Prototypes */
static herr_t H5VL_native_term(void);
static hid_t H5VL_native_file_create(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id);
static hid_t H5VL_native_file_open(const char *name, unsigned flags, hid_t fapl_id);
static herr_t H5VL_native_file_flush(hid_t fid, H5F_scope_t scope);
static herr_t H5VL_native_file_get(hid_t file_id, H5VL_file_get_t get_type, va_list arguments);
static herr_t H5VL_native_file_close(hid_t fid);
static hid_t H5VL_native_attr_create(hid_t loc_id, const char *attr_name, hid_t acpl_id, hid_t aapl_id);
static hid_t H5VL_native_attr_open(hid_t loc_id, void *location, const char *attr_name, hid_t aapl_id);
static herr_t H5VL_native_attr_read(hid_t attr_id, hid_t dtype_id, void *buf);
static herr_t H5VL_native_attr_write(hid_t attr_id, hid_t dtype_id, const void *buf);
static herr_t H5VL_native_attr_get(hid_t id, H5VL_attr_get_t get_type, va_list arguments);
static herr_t H5VL_native_attr_generic(hid_t id, H5VL_attr_generic_t generic_type, va_list arguments);
static herr_t H5VL_native_attr_close(hid_t attr_id);
static hid_t H5VL_native_dataset_create(hid_t loc_id, const char *name, hid_t dcpl_id, hid_t dapl_id);
static hid_t H5VL_native_dataset_open(hid_t loc_id, const char *name, hid_t dapl_id);
static herr_t H5VL_native_dataset_read(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
hid_t file_space_id, hid_t plist_id, void *buf);
static herr_t H5VL_native_dataset_write(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
hid_t file_space_id, hid_t plist_id, const void *buf);
static herr_t H5VL_native_dataset_set_extent(hid_t dset_id, const hsize_t size[]);
static herr_t H5VL_native_dataset_get(hid_t id, H5VL_dataset_get_t get_type, va_list arguments);
static herr_t H5VL_native_dataset_close(hid_t dataset_id);
static herr_t H5VL_native_datatype_commit(hid_t loc_id, const char *name, hid_t type_id,
hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id);
static hid_t H5VL_native_datatype_open(hid_t loc_id, const char *name, hid_t tapl_id);
static hid_t H5VL_native_group_create(hid_t loc_id, const char *name, hid_t gcpl_id, hid_t gapl_id);
static hid_t H5VL_native_group_open(hid_t loc_id, const char *name, hid_t gapl_id);
static herr_t H5VL_native_group_get(hid_t obj_id, H5VL_group_get_t get_type, va_list arguments);
static herr_t H5VL_native_group_close(hid_t group_id);
static herr_t H5VL_native_link_create(H5VL_link_create_type_t create_type, hid_t loc_id,
const char *link_name, hid_t lcpl_id, hid_t lapl_id);
static herr_t H5VL_native_link_move(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
const char *dst_name, hbool_t copy_flag, hid_t lcpl_id, hid_t lapl_id);
static hid_t H5VL_native_object_open(hid_t loc_id, void *location, hid_t lapl_id);
static herr_t H5VL_native_object_get(hid_t id, H5VL_object_get_t get_type, va_list arguments);
static herr_t H5VL_native_object_lookup(hid_t loc_id, H5VL_object_lookup_t lookup_type, va_list arguments);
static herr_t H5VL_native_object_close(hid_t object_id);
H5VL_class_t H5VL_native_g = {
"native", /* name */
0, /* nrefs */
H5VL_native_term, /*terminate */
{ /* attribute_cls */
H5VL_native_attr_create, /* create */
H5VL_native_attr_open, /* open */
H5VL_native_attr_read, /* read */
H5VL_native_attr_write, /* write */
NULL, /* delete */
H5VL_native_attr_get, /* get */
H5VL_native_attr_generic, /* generic */
H5VL_native_attr_close /* close */
},
{ /* datatype_cls */
H5VL_native_datatype_commit, /* commit */
H5VL_native_datatype_open /* open */
},
{ /* dataset_cls */
H5VL_native_dataset_create, /* create */
H5VL_native_dataset_open, /* open */
H5VL_native_dataset_read, /* read */
H5VL_native_dataset_write, /* write */
H5VL_native_dataset_set_extent, /* set extent */
H5VL_native_dataset_get, /* get */
H5VL_native_dataset_close /* close */
},
{ /* group_cls */
H5VL_native_group_create, /* create */
H5VL_native_group_open, /* open */
H5VL_native_group_get, /* get */
H5VL_native_group_close /* close */
},
{ /* file_cls */
H5VL_native_file_create, /* create */
H5VL_native_file_open, /* open */
H5VL_native_file_flush, /* flush */
H5VL_native_file_get, /* get */
H5VL_native_file_close /* close */
},
{ /* link_cls */
H5VL_native_link_create, /* create */
H5VL_native_link_move, /* move */
NULL, /* get */
NULL /* delete */
},
{ /* object_cls */
H5VL_native_object_open, /* open */
NULL, /* move */
NULL, /* copy */
H5VL_native_object_lookup, /* lookup */
H5VL_native_object_get, /* get */
H5VL_native_object_close /* close */
}
};
/*--------------------------------------------------------------------------
NAME
H5VL_native_init_interface -- Initialize interface-specific information
USAGE
herr_t H5VL_native_init_interface()
RETURNS
Non-negative on success/Negative on failure
DESCRIPTION
Initializes any interface-specific data or routines. (Just calls
H5VL_native_init currently).
--------------------------------------------------------------------------*/
static herr_t
H5VL_native_init_interface(void)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
FUNC_LEAVE_NOAPI(SUCCEED)
} /* H5VL_native_init_interface() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_init
*
* Purpose: Initialize this vol plugin by registering the driver with the
* library.
*
* Return: Success: The ID for the native plugin.
* Failure: Negative.
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
H5VL_class_t *
H5VL_native_init(void)
{
H5VL_class_t *ret_value = NULL; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Set return value */
ret_value = &H5VL_native_g;
ret_value->nrefs ++;
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_init() */
/*---------------------------------------------------------------------------
* Function: H5VL_native_term
*
* Purpose: Shut down the VOL plugin
*
* Returns: Non-negative on success or negative on failure
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*---------------------------------------------------------------------------
*/
static herr_t
H5VL_native_term(void)
{
FUNC_ENTER_NOAPI_NOINIT_NOERR
/* Reset VOL ID */
H5VL_NATIVE_g = 0;
H5VL_native_g.nrefs = 0;
FUNC_LEAVE_NOAPI(SUCCEED)
} /* end H5VL_native_term() */
/*-------------------------------------------------------------------------
* Function: H5Pset_fapl_native
*
* Purpose: Modify the file access property list to use the H5VL_NATIVE
* plugin defined in this source file.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
herr_t
H5Pset_fapl_native(hid_t fapl_id)
{
H5P_genplist_t *plist; /* Property list pointer */
herr_t ret_value;
FUNC_ENTER_API(FAIL)
H5TRACE1("e", "i", fapl_id);
if(NULL == (plist = H5P_object_verify(fapl_id, H5P_FILE_ACCESS)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file access property list")
ret_value = H5P_set_vol(plist, &H5VL_native_g);
done:
FUNC_LEAVE_API(ret_value)
} /* end H5Pset_fapl_native() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_file_open
*
* Purpose: Opens a file as a native HDF5 file.
*
* Return: Success: file id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_file_open(const char *name, unsigned flags, hid_t fapl_id)
{
H5F_t *new_file; /* file struct */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/* Open the file */
if(NULL == (new_file = H5F_open(name, flags, H5P_FILE_CREATE_DEFAULT, fapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to open file")
/* Get an atom for the file */
if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle")
/* store a pointer to the VOL class in the file structure */
new_file->vol_cls = &H5VL_native_g;
/* Keep this ID in file object structure */
new_file->file_id = ret_value;
done:
if(ret_value < 0 && new_file && H5F_try_close(new_file) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_file_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_file_create
*
* Purpose: Creates a file as a native HDF5 file.
*
* Return: Success: the file id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_file_create(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id)
{
H5F_t *new_file; /* file struct */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/*
* Adjust bit flags by turning on the creation bit and making sure that
* the EXCL or TRUNC bit is set. All newly-created files are opened for
* reading and writing.
*/
if (0==(flags & (H5F_ACC_EXCL|H5F_ACC_TRUNC)))
flags |= H5F_ACC_EXCL; /*default*/
flags |= H5F_ACC_RDWR | H5F_ACC_CREAT;
/* Create the file */
if(NULL == (new_file = H5F_open(name, flags, fcpl_id, fapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_FILE, H5E_CANTOPENFILE, FAIL, "unable to create file")
/* Get an atom for the file */
if((ret_value = H5I_register(H5I_FILE, new_file, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to atomize file handle")
/* store a pointer to the VOL class in the file structure */
new_file->vol_cls = &H5VL_native_g;
/* Keep this ID in file object structure */
new_file->file_id = ret_value;
done:
if(ret_value < 0 && new_file && H5F_try_close(new_file) < 0)
HDONE_ERROR(H5E_FILE, H5E_CANTCLOSEFILE, FAIL, "problems closing file")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_file_create() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_file_close
*
* Purpose: Closes a file.
*
* Return: Success: 0
* Failure: -1, file not closed.
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_file_close(hid_t file_id)
{
int nref;
H5F_t *f;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check/fix arguments. */
if(H5I_FILE != H5I_get_type(file_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file ID")
/* get the file struct */
if(NULL == (f = (H5F_t *)H5I_object(file_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier")
/* Flush file if this is the last reference to this id and we have write
* intent, unless it will be flushed by the "shared" file being closed.
* This is only necessary to replicate previous behaviour, and could be
* disabled by an option/property to improve performance. */
if((f->shared->nrefs > 1) && (H5F_INTENT(f) & H5F_ACC_RDWR)) {
if((nref = H5I_get_ref(f->file_id, FALSE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTGET, FAIL, "can't get ID ref count")
if(nref == 1)
if(H5F_flush(f, H5AC_dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush cache")
} /* end if */
/*
* Decrement reference count on atom. When it reaches zero the file will
* be closed.
*/
if(H5I_dec_ref(f->file_id) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTCLOSEFILE, FAIL, "decrementing file ID failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_file_close() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_file_flush
*
* Purpose: Flushs a native HDF5 file.
*
* Return: Success: 0
* Failure: -1, file not flushed.
*
* Programmer: Mohamad Chaarawi
* February, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_file_flush(hid_t object_id, H5F_scope_t scope)
{
H5F_t *f = NULL; /* File to flush */
H5O_loc_t *oloc = NULL; /* Object location for ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
switch(H5I_get_type(object_id)) {
case H5I_FILE:
if(NULL == (f = (H5F_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid file identifier")
break;
case H5I_GROUP:
{
H5G_t *grp;
if(NULL == (grp = (H5G_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid group identifier")
oloc = H5G_oloc(grp);
break;
}
case H5I_DATATYPE:
{
H5T_t *type;
if(NULL == (type = (H5T_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid type identifier")
oloc = H5T_oloc(type);
break;
}
case H5I_DATASET:
{
H5D_t *dset;
if(NULL == (dset = (H5D_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid dataset identifier")
oloc = H5D_oloc(dset);
break;
}
case H5I_ATTR:
{
H5A_t *attr;
if(NULL == (attr = (H5A_t *)H5I_object(object_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "invalid attribute identifier")
oloc = H5A_oloc(attr);
break;
}
case H5I_UNINIT:
case H5I_BADID:
case H5I_DATASPACE:
case H5I_REFERENCE:
case H5I_VFL:
case H5I_VOL:
case H5I_GENPROP_CLS:
case H5I_GENPROP_LST:
case H5I_ERROR_CLASS:
case H5I_ERROR_MSG:
case H5I_ERROR_STACK:
case H5I_NTYPES:
default:
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file or file object")
} /* end switch */
if(!f) {
if(!oloc)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not assocated with a file")
f = oloc->file;
} /* end if */
if(!f)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "object is not associated with a file")
/* Flush the file */
/*
* Nothing to do if the file is read only. This determination is
* made at the shared open(2) flags level, implying that opening a
* file twice, once for read-only and once for read-write, and then
* calling H5Fflush() with the read-only handle, still causes data
* to be flushed.
*/
if(H5F_ACC_RDWR & H5F_INTENT(f)) {
/* Flush other files, depending on scope */
if(H5F_SCOPE_GLOBAL == scope) {
/* Call the flush routine for mounted file hierarchies */
if(H5F_flush_mounts(f, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush mounted file hierarchy")
} /* end if */
else {
/* Call the flush routine, for this file */
if(H5F_flush(f, H5AC_dxpl_id, FALSE) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTFLUSH, FAIL, "unable to flush file's cached information")
} /* end else */
} /* end if */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_file_flush() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_file_get
*
* Purpose: Gets certain data about a file
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* February, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_file_get(hid_t obj_id, H5VL_file_get_t get_type, va_list arguments)
{
H5F_t *f = NULL; /* File struct */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check/fix arguments. */
if(H5I_get_type(obj_id) == H5I_FILE ) {
if(NULL == (f = (H5F_t *)H5I_object(obj_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a file")
} /* end if */
else {
H5G_loc_t loc; /* Object location */
/* Get symbol table entry */
if(H5G_loc(obj_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object ID")
f = loc.oloc->file;
} /* end else */
switch (get_type) {
/* H5Fget_access_plist */
case H5VL_FILE_GET_FAPL:
{
hid_t *plist_id = va_arg (arguments, hid_t *);
/* Retrieve the file's access property list */
if((*plist_id = H5F_get_access_plist(f, TRUE)) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get file access property list")
break;
}
/* H5Fget_create_plist */
case H5VL_FILE_GET_FCPL:
{
H5P_genplist_t *plist; /* Property list */
hid_t *plist_id = va_arg (arguments, hid_t *);
if(NULL == (plist = (H5P_genplist_t *)H5I_object(f->shared->fcpl_id)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a property list")
/* Create the property list object to return */
if((*plist_id = H5P_copy_plist(plist, TRUE)) < 0)
HGOTO_ERROR(H5E_INTERNAL, H5E_CANTINIT, FAIL, "unable to copy file creation properties")
break;
}
/* H5Fget_filesize */
case H5VL_FILE_GET_SIZE:
{
haddr_t eof; /* End of file address */
hsize_t *ret = va_arg (arguments, hsize_t *);
/* Go get the actual file size */
if(HADDR_UNDEF == (eof = H5FDget_eof(f->shared->lf)))
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to get file size")
*ret = (hsize_t)eof;
break;
}
/* H5Fget_freespace */
case H5VL_FILE_GET_FREE_SPACE:
{
hsize_t tot_space; /* Amount of free space in the file */
hssize_t *ret = va_arg (arguments, hssize_t *);
/* Go get the actual amount of free space in the file */
if(H5MF_get_freespace(f, H5AC_ind_dxpl_id, &tot_space, NULL) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file")
*ret = (hssize_t)tot_space;
break;
}
case H5VL_FILE_GET_FREE_SECTIONS:
{
H5F_sect_info_t *sect_info = va_arg (arguments, H5F_sect_info_t *);
ssize_t *ret = va_arg (arguments, ssize_t *);
H5F_mem_t type = va_arg (arguments, H5F_mem_t);
size_t nsects = va_arg (arguments, size_t);
/* Go get the free-space section information in the file */
if((*ret = H5MF_get_free_sections(f, H5AC_ind_dxpl_id,
type, nsects, sect_info)) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "unable to check free space for file")
break;
}
/* H5Fget_info2 */
case H5VL_FILE_GET_INFO:
{
H5F_info2_t *finfo = va_arg (arguments, H5F_info2_t *);
/* For file IDs, get the file object directly */
/* (This prevents the H5G_loc() call from returning the file pointer for
* the top file in a mount hierarchy)
*/
HDassert(f->shared);
/* Reset file info struct */
HDmemset(finfo, 0, sizeof(*finfo));
/* Get the size of the superblock and any superblock extensions */
if(H5F_super_size(f, H5AC_ind_dxpl_id, &finfo->super.super_size,
&finfo->super.super_ext_size) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "Unable to retrieve superblock sizes")
/* Get the size of any persistent free space */
if(H5MF_get_freespace(f, H5AC_ind_dxpl_id, &finfo->free.tot_space,
&finfo->free.meta_size) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "Unable to retrieve free space information")
/* Check for SOHM info */
if(H5F_addr_defined(f->shared->sohm_addr))
if(H5SM_ih_size(f, H5AC_ind_dxpl_id, &finfo->sohm.hdr_size, &finfo->sohm.msgs_info) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "Unable to retrieve SOHM index & heap storage info")
/* Set version # fields */
finfo->super.version = f->shared->sblock->super_vers;
finfo->sohm.version = f->shared->sohm_vers;
finfo->free.version = HDF5_FREESPACE_VERSION;
break;
}
/* H5Fget_intent */
case H5VL_FILE_GET_INTENT:
{
unsigned *ret = va_arg (arguments, unsigned *);
/* HDF5 uses some flags internally that users don't know about.
* Simplify things for them so that they only get either H5F_ACC_RDWR
* or H5F_ACC_RDONLY.
*/
if(H5F_INTENT(f) & H5F_ACC_RDWR)
*ret = H5F_ACC_RDWR;
else
*ret = H5F_ACC_RDONLY;
break;
}
/* H5Fget_name */
case H5VL_FILE_GET_NAME:
{
char *name = va_arg (arguments, char *);
ssize_t *ret = va_arg (arguments, ssize_t *);
size_t size = va_arg (arguments, size_t);
size_t len;
len = HDstrlen(H5F_OPEN_NAME(f));
if(name) {
HDstrncpy(name, H5F_OPEN_NAME(f), MIN(len + 1,size));
if(len >= size)
name[size-1]='\0';
} /* end if */
/* Set the return value for the API call */
*ret = (ssize_t)len;
break;
}
/* H5Fget_vfd_handle */
case H5VL_FILE_GET_VFD_HANDLE:
{
void **file_handle = va_arg (arguments, void **);
hid_t fapl = va_arg (arguments, hid_t);
/* Retrieve the VFD handle for the file */
if(H5F_get_vfd_handle(f, fapl, file_handle) < 0)
HGOTO_ERROR(H5E_FILE, H5E_CANTGET, FAIL, "can't retrieve VFD handle")
break;
}
/* H5Fget_mdc_config */
case H5VL_FILE_GET_MDC_CONF:
{
H5AC_cache_config_t *config_ptr = va_arg (arguments, H5AC_cache_config_t *);
/* Go get the resize configuration */
if(H5AC_get_cache_auto_resize_config(f->shared->cache, config_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_auto_resize_config() failed.")
break;
}
/* H5Fget_mdc_hit_rate */
case H5VL_FILE_GET_MDC_HR:
{
double *hit_rate_ptr = va_arg (arguments, double *);
/* Go get the current hit rate */
if(H5AC_get_cache_hit_rate(f->shared->cache, hit_rate_ptr) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_hit_rate() failed.")
break;
}
/* H5Fget_mdc_size */
case H5VL_FILE_GET_MDC_SIZE:
{
size_t *max_size_ptr = va_arg (arguments, size_t *);
size_t *min_clean_size_ptr = va_arg (arguments, size_t *);
size_t *cur_size_ptr = va_arg (arguments, size_t *);
int *cur_num_entries_ptr = va_arg (arguments, int *);
int32_t cur_num_entries;
/* Go get the size data */
if(H5AC_get_cache_size(f->shared->cache, max_size_ptr, min_clean_size_ptr,
cur_size_ptr, &cur_num_entries) < 0)
HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_size() failed.")
if(cur_num_entries_ptr != NULL)
*cur_num_entries_ptr = (int)cur_num_entries;
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information")
} /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_file_get() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_group_create
*
* Purpose: Creates a group inside a native h5 file.
*
* Return: Success: group id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_group_create(hid_t loc_id, const char *name, hid_t gcpl_id, hid_t gapl_id)
{
H5P_genplist_t *plist; /* Property list pointer */
H5G_loc_t loc; /* Location to create group */
H5G_t *grp = NULL; /* New group created */
hid_t lcpl_id;
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/* Get the plist structure */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(gcpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
/* get creation properties */
if(H5P_get(plist, H5G_CRT_LCPL_ID_NAME, &lcpl_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for lcpl id")
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* if name is NULL then this is from H5Gcreate_anon */
if (name == NULL) {
H5G_obj_create_t gcrt_info; /* Information for group creation */
/* Set up group creation info */
gcrt_info.gcpl_id = gcpl_id;
gcrt_info.cache_type = H5G_NOTHING_CACHED;
HDmemset(&gcrt_info.cache, 0, sizeof(gcrt_info.cache));
/* Create the new group & get its ID */
if(NULL == (grp = H5G__create(loc.oloc->file, &gcrt_info, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create group")
}
/* otherwise it's from H5Gcreate */
else {
/* Create the new group & get its ID */
if(NULL == (grp = H5G__create_named(&loc, name, lcpl_id, gcpl_id, gapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_SYM, H5E_CANTINIT, FAIL, "unable to create group")
}
if((ret_value = H5I_register(H5I_GROUP, grp, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register group")
done:
if (name == NULL) {
/* Release the group's object header, if it was created */
if(grp) {
H5O_loc_t *oloc; /* Object location for group */
/* Get the new group's object location */
if(NULL == (oloc = H5G_oloc(grp)))
HDONE_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "unable to get object location of group")
/* Decrement refcount on group's object header in memory */
if(H5O_dec_rc_by_loc(oloc, H5AC_dxpl_id) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTDEC, FAIL, "unable to decrement refcount on newly created object")
} /* end if */
}
if(ret_value < 0)
if(grp && H5G_close(grp) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_group_create() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_group_open
*
* Purpose: Opens a group inside a native h5 file.
*
* Return: Success: group id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* January, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_group_open(hid_t loc_id, const char *name, hid_t gapl_id)
{
H5G_loc_t loc; /* Location to open group */
H5G_t *grp = NULL; /* New group opend */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* Open the group */
if((grp = H5G__open_name(&loc, name, gapl_id, H5AC_dxpl_id)) == NULL)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open group")
/* Register an ID for the group */
if((ret_value = H5I_register(H5I_GROUP, grp, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register group")
done:
if(ret_value < 0)
if(grp && H5G_close(grp) < 0)
HDONE_ERROR(H5E_SYM, H5E_CLOSEERROR, FAIL, "unable to release group")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_group_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_group_close
*
* Purpose: Closes a group.
*
* Return: Success: 0
* Failure: -1, group not closed.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_group_close(hid_t group_id)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */
if(NULL == H5I_object_verify(group_id,H5I_GROUP))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a group")
/*
* Decrement the counter on the group atom. It will be freed if the count
* reaches zero.
*/
if(H5I_dec_app_ref(group_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to close group")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_group_close() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_group_get
*
* Purpose: Gets certain data about a file
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* February, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_group_get(hid_t obj_id, H5VL_group_get_t get_type, va_list arguments)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
switch (get_type) {
/* H5Gget_create_plist */
case H5VL_GROUP_GET_GCPL:
{
hid_t *new_gcpl_id;
H5G_t *grp = NULL;
/* Check args */
if(NULL == (grp = (H5G_t *)H5I_object_verify(obj_id, H5I_GROUP)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a group")
new_gcpl_id = va_arg (arguments, hid_t *);
if((*new_gcpl_id = H5G_get_create_plist(grp)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get creation property list for group")
break;
}
/* H5Fget_info2 */
case H5VL_GROUP_GET_INFO:
{
H5G_info_t *grp_info = va_arg (arguments, H5G_info_t *);
H5O_loc_t *oloc = va_arg (arguments, H5O_loc_t *);
H5G_loc_t loc;
if(H5G_loc(obj_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!H5F_addr_defined(oloc->addr))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no address supplied")
/* Retrieve the group's information */
if(H5G__obj_info(oloc, grp_info, H5AC_ind_dxpl_id) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve group info")
if(H5O_loc_free(oloc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information from group")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5VL_native_object_open
*
* Purpose: Opens a object inside a native h5 file.
*
* Return: Success: object id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_object_open(hid_t loc_id, void *location, hid_t lapl_id)
{
H5G_loc_t loc;
H5G_loc_t obj_loc; /* Location used to open group */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t *oloc = (H5O_loc_t *)location;
hid_t ret_value = FAIL;
FUNC_ENTER_NOAPI_NOINIT
/* Check args */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(!H5F_addr_defined(oloc->addr))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no address supplied")
/* Set up opened group location to fill in */
obj_loc.oloc = oloc;
obj_loc.path = &obj_path;
H5G_name_reset(obj_loc.path);
/* Open the object */
if((ret_value = H5O_open_by_loc(&obj_loc, lapl_id, H5AC_dxpl_id, TRUE)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTOPENOBJ, FAIL, "unable to open object")
done:
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_object_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_object_close
*
* Purpose: Closes a object.
*
* Return: Success: 0
* Failure: -1, object not closed.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_object_close(hid_t object_id)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Get the type of the object and close it in the correct way */
switch(H5I_get_type(object_id)) {
case H5I_GROUP:
case H5I_DATATYPE:
case H5I_DATASET:
if(H5I_object(object_id) == NULL)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "not a valid object")
if(H5I_dec_app_ref(object_id) < 0)
HGOTO_ERROR(H5E_OHDR, H5E_CANTRELEASE, FAIL, "unable to close object")
break;
case H5I_UNINIT:
case H5I_BADID:
case H5I_FILE:
case H5I_DATASPACE:
case H5I_ATTR:
case H5I_REFERENCE:
case H5I_VFL:
case H5I_VOL:
case H5I_GENPROP_CLS:
case H5I_GENPROP_LST:
case H5I_ERROR_CLASS:
case H5I_ERROR_MSG:
case H5I_ERROR_STACK:
case H5I_NTYPES:
default:
HGOTO_ERROR(H5E_ARGS, H5E_CANTRELEASE, FAIL, "not a valid file object ID (dataset, group, or datatype)")
break;
} /* end switch */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_object_close() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_object_get
*
* Purpose: Gets certain data about a file
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_object_get(hid_t id, H5VL_object_get_t get_type, va_list arguments)
{
herr_t ret_value = SUCCEED; /* Return value */
H5G_loc_t loc; /* Location of group */
FUNC_ENTER_NOAPI_NOINIT
if(H5G_loc(id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
switch (get_type) {
/* H5Oget_info / H5Oget_info_by_name / H5Oget_info_by_idx */
case H5VL_OBJECT_GET_INFO:
{
H5O_info_t *obj_info = va_arg (arguments, H5O_info_t *);
H5O_loc_t *oloc = va_arg (arguments, H5O_loc_t *);
hbool_t loc_set = FALSE;
if(NULL == oloc) {
oloc = loc.oloc;
}
else {
loc_set = TRUE;
}
/* Retrieve the object's information */
if(H5O_get_info(oloc, H5AC_ind_dxpl_id, TRUE, obj_info) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTGET, FAIL, "can't retrieve object info")
if(loc_set && H5O_loc_free(oloc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
break;
}
/* H5Oget_comment / H5Oget_comment_by_name */
case H5VL_OBJECT_GET_COMMENT:
{
ssize_t *ret = va_arg (arguments, ssize_t *);
char *comment = va_arg (arguments, char *);
size_t bufsize = va_arg (arguments, size_t);
char *name = va_arg (arguments, char *);
hid_t lapl_id = va_arg (arguments, hid_t);
/* Retrieve the object's comment */
if((*ret = H5G_loc_get_comment(&loc, name, comment/*out*/, bufsize,
lapl_id, H5AC_ind_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found")
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information from object")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_object_get() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_object_lookup
*
* Purpose: Lookup the object location in the file
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_object_lookup(hid_t loc_id, H5VL_object_lookup_t lookup_type, va_list arguments)
{
H5G_loc_t loc;
H5G_loc_t obj_loc;
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t **location;
haddr_t obj_addr;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
location = va_arg (arguments, H5O_loc_t **);
*location = (H5O_loc_t *) H5MM_malloc (sizeof (H5O_loc_t));
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
obj_loc.oloc = *location;
obj_loc.path = &obj_path;
H5G_loc_reset(&obj_loc);
switch (lookup_type) {
case H5VL_OBJECT_LOOKUP:
(*location)->addr = loc.oloc->addr;
(*location)->file = loc.oloc->file;
(*location)->holding_file = loc.oloc->holding_file;
break;
case H5VL_OBJECT_LOOKUP_BY_NAME:
{
char *name = va_arg (arguments, char *);
hid_t lapl_id = va_arg (arguments, hid_t);
HDassert(name && *name);
/* Find the object's location */
if((ret_value = H5G_loc_find(&loc, name, &obj_loc, lapl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "object not found")
break;
}
case H5VL_OBJECT_LOOKUP_BY_IDX:
{
char *group_name = va_arg (arguments, char *);
H5_index_t idx_type = va_arg (arguments, H5_index_t);
H5_iter_order_t order = va_arg (arguments, H5_iter_order_t);
hsize_t n = va_arg (arguments, hsize_t);
hid_t lapl_id = va_arg (arguments, hid_t);
/* Find the object's location, according to the order in the index */
if((ret_value = H5G_loc_find_by_idx(&loc, group_name, idx_type, order, n,
&obj_loc/*out*/, lapl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_SYM, H5E_NOTFOUND, FAIL, "group not found")
break;
}
case H5VL_OBJECT_LOOKUP_BY_ADDR:
{
obj_addr = va_arg (arguments, haddr_t);
(*location)->addr = obj_addr;
(*location)->file = loc.oloc->file;
(*location)->holding_file = loc.oloc->holding_file;
break;
}
case H5VL_OBJECT_LOOKUP_BY_REF:
{
H5R_type_t ref_type = va_arg (arguments, H5R_type_t);
void *_ref = va_arg (arguments, void *);
H5F_t *file = NULL; /* File object */
/* Get the file pointer from the entry */
file = loc.oloc->file;
HDassert(_ref);
HDassert(ref_type > H5R_BADTYPE || ref_type < H5R_MAXTYPE);
HDassert(file);
switch(ref_type) {
case H5R_OBJECT:
(*location)->addr = *(const hobj_ref_t *)_ref; /* Only object references currently supported */
(*location)->file = loc.oloc->file;
(*location)->holding_file = loc.oloc->holding_file;
break;
case H5R_DATASET_REGION:
{
H5HG_t hobjid; /* Heap object ID */
uint8_t *buf; /* Buffer to store serialized selection in */
const uint8_t *p; /* Pointer to OID to store */
/* Get the heap ID for the dataset region */
p = (const uint8_t *)_ref;
H5F_addr_decode(file, &p, &(hobjid.addr));
INT32DECODE(p, hobjid.idx);
/* Get the dataset region from the heap (allocate inside routine) */
if(NULL == (buf = (uint8_t *)H5HG_read(file, H5AC_dxpl_id,
&hobjid, NULL, NULL)))
HGOTO_ERROR(H5E_REFERENCE, H5E_READERROR, FAIL, "Unable to read dataset region information")
/* Get the object oid for the dataset */
p = buf;
//H5F_addr_decode(file, &p, &(obj_addr));
H5F_addr_decode(file, &p, &((*location)->addr));
(*location)->file = file;
/* Free the buffer allocated in H5HG_read() */
H5MM_xfree(buf);
} /* end case */
break;
case H5R_BADTYPE:
case H5R_MAXTYPE:
default:
HDassert("unknown reference type" && 0);
HGOTO_ERROR(H5E_REFERENCE, H5E_UNSUPPORTED, FAIL, "internal error (unknown reference type)")
} /* end switch */
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't lookup this object")
} /* end switch */
if(H5G_name_free(obj_loc.path) < 0)
HGOTO_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "unable to free path")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_object_lookup() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_datatype_commit
*
* Purpose: Commits a datatype inside a native h5 file.
*
* Return: Success: datatype id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_datatype_commit(hid_t loc_id, const char *name, hid_t type_id, hid_t lcpl_id,
hid_t tcpl_id, hid_t tapl_id)
{
H5G_loc_t loc; /* Location to commit datatype */
H5T_t *type; /* Datatype for ID */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
/* Commit the type */
if(H5T__commit_named(&loc, name, type, lcpl_id, tcpl_id, tapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTINIT, FAIL, "unable to commit datatype")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_datatype_commit() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_datatype_open
*
* Purpose: Opens a named datatype inside a native h5 file.
*
* Return: Success: datatype id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_datatype_open(hid_t loc_id, const char *name, hid_t tapl_id)
{
H5T_t *type = NULL; /* Datatype opened in file */
H5G_loc_t loc; /* Group location of object to open */
H5G_name_t path; /* Datatype group hier. path */
H5O_loc_t oloc; /* Datatype object location */
H5O_type_t obj_type; /* Type of object at location */
H5G_loc_t type_loc; /* Group object for datatype */
hbool_t obj_found = FALSE; /* Object at 'name' found */
hid_t dxpl_id = H5AC_dxpl_id; /* dxpl to use to open datatype */
hid_t ret_value = FAIL;
FUNC_ENTER_NOAPI_NOINIT
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* Set up datatype location to fill in */
type_loc.oloc = &oloc;
type_loc.path = &path;
H5G_loc_reset(&type_loc);
/*
* Find the named datatype object header and read the datatype message
* from it.
*/
if(H5G_loc_find(&loc, name, &type_loc/*out*/, tapl_id, dxpl_id) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_NOTFOUND, FAIL, "not found")
obj_found = TRUE;
/* Check that the object found is the correct type */
if(H5O_obj_type(&oloc, &obj_type, dxpl_id) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTGET, FAIL, "can't get object type")
if(obj_type != H5O_TYPE_NAMED_DATATYPE)
HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, FAIL, "not a named datatype")
/* Open it */
if(NULL == (type = H5T_open(&type_loc, dxpl_id)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTOPENOBJ, FAIL, "unable to open named datatype")
/* Register the type and return the ID */
if((ret_value = H5I_register(H5I_DATATYPE, type, TRUE)) < 0)
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTREGISTER, FAIL, "unable to register named datatype")
done:
if(ret_value < 0) {
if(type != NULL)
H5T_close(type);
else {
if(obj_found && H5F_addr_defined(type_loc.oloc->addr))
H5G_loc_free(&type_loc);
} /* end else */
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_datatype_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_create
*
* Purpose: Creates a dataset inside a native h5 file.
*
* Return: Success: dataset id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_dataset_create(hid_t loc_id, const char *name, hid_t dcpl_id, hid_t dapl_id)
{
H5P_genplist_t *plist; /* Property list pointer */
H5G_loc_t loc; /* Object location to insert dataset into */
hid_t type_id, space_id, lcpl_id;
H5D_t *dset = NULL; /* New dataset's info */
const H5S_t *space; /* Dataspace for dataset */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/* Get the plist structure */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(dcpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
/* get creation properties */
if(H5P_get(plist, H5D_CRT_TYPE_ID_NAME, &type_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for datatype id")
if(H5P_get(plist, H5D_CRT_SPACE_ID_NAME, &space_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for space id")
if(H5P_get(plist, H5D_CRT_LCPL_ID_NAME, &lcpl_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for lcpl id")
/* Check arguments */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location ID")
if(H5I_DATATYPE != H5I_get_type(type_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype ID")
if(NULL == (space = (const H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataspace ID")
/* H5Dcreate_anon */
if (NULL == name) {
/* build and open the new dataset */
if(NULL == (dset = H5D_create(loc.oloc->file, type_id, space, dcpl_id, dapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset")
/* Register the new dataset to get an ID for it */
if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register dataset")
}
/* H5Dcreate2 */
else {
/* Create the new dataset & get its ID */
if(NULL == (dset = H5D__create_named(&loc, name, type_id, space, lcpl_id,
dcpl_id, dapl_id, H5AC_dxpl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to create dataset")
if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTREGISTER, FAIL, "unable to register dataset")
}
done:
if(NULL == name) {
/* Release the dataset's object header, if it was created */
if(dset) {
H5O_loc_t *oloc; /* Object location for dataset */
/* Get the new dataset's object location */
if(NULL == (oloc = H5D_oloc(dset)))
HDONE_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "unable to get object location of dataset")
/* Decrement refcount on dataset's object header in memory */
if(H5O_dec_rc_by_loc(oloc, H5AC_dxpl_id) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "unable to decrement refcount on newly created object")
} /* end if */
}
if(ret_value < 0)
if(dset && H5D_close(dset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_create() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_open
*
* Purpose: Opens a dataset inside a native h5 file.
*
* Return: Success: dataset id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_dataset_open(hid_t loc_id, const char *name, hid_t dapl_id)
{
H5D_t *dset = NULL;
H5G_loc_t loc; /* Object location of group */
H5G_loc_t dset_loc; /* Object location of dataset */
H5G_name_t path; /* Dataset group hier. path */
H5O_loc_t oloc; /* Dataset object location */
H5O_type_t obj_type; /* Type of object at location */
hbool_t loc_found = FALSE; /* Location at 'name' found */
hid_t dxpl_id = H5AC_dxpl_id; /* dxpl to use to open datset */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* Set up dataset location to fill in */
dset_loc.oloc = &oloc;
dset_loc.path = &path;
H5G_loc_reset(&dset_loc);
/* Find the dataset object */
if(H5G_loc_find(&loc, name, &dset_loc, dapl_id, dxpl_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_NOTFOUND, FAIL, "not found")
loc_found = TRUE;
/* Check that the object found is the correct type */
if(H5O_obj_type(&oloc, &obj_type, dxpl_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTGET, FAIL, "can't get object type")
if(obj_type != H5O_TYPE_DATASET)
HGOTO_ERROR(H5E_DATASET, H5E_BADTYPE, FAIL, "not a dataset")
/* Open the dataset */
if(NULL == (dset = H5D_open(&dset_loc, dapl_id, dxpl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "can't open dataset")
/* Register an atom for the dataset */
if((ret_value = H5I_register(H5I_DATASET, dset, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "can't register dataset atom")
done:
if(ret_value < 0) {
if(dset) {
if(H5D_close(dset) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CLOSEERROR, FAIL, "unable to release dataset")
} /* end if */
else {
if(loc_found && H5G_loc_free(&dset_loc) < 0)
HDONE_ERROR(H5E_DATASET, H5E_CANTRELEASE, FAIL, "can't free location")
} /* end else */
} /* end if */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_close
*
* Purpose: Closes a dataset.
*
* Return: Success: 0
* Failure: -1, dataset not closed.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_dataset_close(hid_t dset_id)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */
if(NULL == H5I_object_verify(dset_id, H5I_DATASET))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
/*
* Decrement the counter on the dataset. It will be freed if the count
* reaches zero.
*
* Pass in TRUE for the 3rd parameter to tell the function to remove
* dataset's ID even though the freeing function might fail. Please
* see the comments in H5I_dec_ref for details. (SLU - 2010/9/7)
*/
if(H5I_dec_app_ref_always_close(dset_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTDEC, FAIL, "can't decrement count on dataset ID")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_close() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_read
*
* Purpose: Reads raw data from a dataset into a buffer.
*
* Return: Success: 0
* Failure: -1, dataset not readd.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_dataset_read(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
hid_t file_space_id, hid_t plist_id, void *buf/*out*/)
{
H5D_t *dset = NULL;
const H5S_t *mem_space = NULL;
const H5S_t *file_space = NULL;
char fake_char;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
if(NULL == dset->oloc.file)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
if(H5S_ALL != mem_space_id) {
if(NULL == (mem_space = (const H5S_t *)H5I_object_verify(mem_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
/* Check for valid selection */
if(H5S_SELECT_VALID(mem_space) != TRUE)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent")
} /* end if */
if(H5S_ALL != file_space_id) {
if(NULL == (file_space = (const H5S_t *)H5I_object_verify(file_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
/* Check for valid selection */
if(H5S_SELECT_VALID(file_space) != TRUE)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent")
} /* end if */
if(!buf && (NULL == file_space || H5S_GET_SELECT_NPOINTS(file_space) != 0))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer")
/* If the buffer is nil, and 0 element is selected, make a fake buffer.
* This is for some MPI package like ChaMPIon on NCSA's tungsten which
* doesn't support this feature.
*/
if(!buf)
buf = &fake_char;
/* read raw data */
if(H5D_read(dset, mem_type_id, mem_space, file_space, plist_id, buf/*out*/) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_READERROR, FAIL, "can't read data")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_read() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_write
*
* Purpose: Writes raw data from a buffer into a dataset.
*
* Return: Success: 0
* Failure: -1, dataset not writed.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_dataset_write(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id,
hid_t file_space_id, hid_t dxpl_id, const void *buf)
{
H5D_t *dset = NULL;
const H5S_t *mem_space = NULL;
const H5S_t *file_space = NULL;
char fake_char;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
if(NULL == dset->oloc.file)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
if(H5S_ALL != mem_space_id) {
if(NULL == (mem_space = (const H5S_t *)H5I_object_verify(mem_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
/* Check for valid selection */
if(H5S_SELECT_VALID(mem_space) != TRUE)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent")
} /* end if */
if(H5S_ALL != file_space_id) {
if(NULL == (file_space = (const H5S_t *)H5I_object_verify(file_space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
/* Check for valid selection */
if(H5S_SELECT_VALID(file_space) != TRUE)
HGOTO_ERROR(H5E_DATASPACE, H5E_BADRANGE, FAIL, "selection+offset not within extent")
} /* end if */
if(!buf && (NULL == file_space || H5S_GET_SELECT_NPOINTS(file_space) != 0))
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "no output buffer")
/* If the buffer is nil, and 0 element is selected, make a fake buffer.
* This is for some MPI package like ChaMPIon on NCSA's tungsten which
* doesn't support this feature.
*/
if(!buf)
buf = &fake_char;
/* write raw data */
if(H5D_write(dset, mem_type_id, mem_space, file_space, dxpl_id, buf) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_WRITEERROR, FAIL, "can't write data")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_write() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_set_extent
*
* Purpose: Set Extent of dataset
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_dataset_set_extent(hid_t dset_id, const hsize_t size[])
{
H5D_t *dset = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */
if(NULL == (dset = (H5D_t *)H5I_object_verify(dset_id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
/* Private function */
if(H5D_set_extent(dset, size, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to set extend dataset")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_set_extent() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_dataset_get
*
* Purpose: Gets certain information about a dataset
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_dataset_get(hid_t id, H5VL_dataset_get_t get_type, va_list arguments)
{
H5D_t *dset = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Check args */
if(NULL == (dset = (H5D_t *)H5I_object_verify(id, H5I_DATASET)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a dataset")
switch (get_type) {
/* H5Dget_space */
case H5VL_DATASET_GET_SPACE:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5D_get_space(dset)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get space ID of dataset")
break;
}
/* H5Dget_space_statuc */
case H5VL_DATASET_GET_SPACE_STATUS:
{
H5D_space_status_t *allocation = va_arg (arguments, H5D_space_status_t *);
/* Read data space address and return */
if(FAIL==(ret_value=H5D_get_space_status(dset, allocation, H5AC_ind_dxpl_id)))
HGOTO_ERROR(H5E_DATASET, H5E_CANTINIT, FAIL, "unable to get space status")
break;
}
/* H5Dget_type */
case H5VL_DATASET_GET_TYPE:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5D_get_type(dset)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get datatype ID of dataset")
break;
}
/* H5Dget_create_plist */
case H5VL_DATASET_GET_DCPL:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5D_get_create_plist(dset)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get creation property list for dataset")
break;
}
/* H5Dget_access_plist */
case H5VL_DATASET_GET_DAPL:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5D_get_access_plist(dset)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get access property list for dataset")
break;
}
/* H5Dget_storage_size */
case H5VL_DATASET_GET_STORAGE_SIZE:
{
hsize_t *ret = va_arg (arguments, hsize_t *);
/* Set return value */
*ret = H5D_get_storage_size(dset, H5AC_ind_dxpl_id);
break;
}
/* H5Dget_offset */
case H5VL_DATASET_GET_OFFSET:
{
haddr_t *ret = va_arg (arguments, haddr_t *);
/* Set return value */
*ret = H5D_get_offset(dset);
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information from dataset")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_dataset_get() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_link_create
*
* Purpose: Creates an hard/soft/UD/external links.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
* April, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_link_create(H5VL_link_create_type_t create_type, hid_t loc_id, const char *link_name,
hid_t lcpl_id, hid_t lapl_id)
{
H5P_genplist_t *plist; /* Property list pointer */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* Get the plist structure */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(lcpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID");
switch (create_type) {
case H5VL_CREATE_HARD_LINK:
{
H5G_loc_t cur_loc;
H5G_loc_t link_loc;
hid_t cur_loc_id;
char *cur_name = NULL;
if(H5P_get(plist, H5L_CRT_TARGET_ID_NAME, &cur_loc_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for current location id")
if(H5P_get(plist, H5L_CRT_TARGET_NAME_NAME, &cur_name) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for current name")
if(cur_loc_id != H5L_SAME_LOC && H5G_loc(cur_loc_id, &cur_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(loc_id != H5L_SAME_LOC && H5G_loc(loc_id, &link_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* H5Lcreate_hard */
if (NULL != cur_name) {
H5G_loc_t *cur_loc_p, *link_loc_p;
/* Set up current & new location pointers */
cur_loc_p = &cur_loc;
link_loc_p = &link_loc;
if(cur_loc_id == H5L_SAME_LOC)
cur_loc_p = link_loc_p;
else if(loc_id == H5L_SAME_LOC)
link_loc_p = cur_loc_p;
else if(cur_loc_p->oloc->file != link_loc_p->oloc->file)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "source and destination should be in the same file.")
/* Create the link */
if((ret_value = H5L_create_hard(cur_loc_p, cur_name, link_loc_p, link_name,
lcpl_id, lapl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_LINK, H5E_CANTINIT, FAIL, "unable to create link")
}
else { /* H5Olink */
/* Link to the object */
if(H5L_link(&link_loc, link_name, &cur_loc, lcpl_id, lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_LINK, H5E_CANTINIT, FAIL, "unable to create link")
}
break;
}
case H5VL_CREATE_SOFT_LINK:
{
char *target_name;
H5G_loc_t link_loc; /* Group location for new link */
if(H5G_loc(loc_id, &link_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(H5P_get(plist, H5L_CRT_TARGET_NAME_NAME, &target_name) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for targe name")
/* Create the link */
if((ret_value = H5L_create_soft(target_name, &link_loc, link_name,
lcpl_id, lapl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_LINK, H5E_CANTINIT, FAIL, "unable to create link")
break;
}
case H5VL_CREATE_UD_LINK:
{
H5G_loc_t link_loc; /* Group location for new link */
H5L_type_t link_type;
void *udata;
size_t udata_size;
if(H5G_loc(loc_id, &link_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(H5P_get(plist, H5L_CRT_LINK_TYPE_NAME, &link_type) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for link type")
if(H5P_get(plist, H5L_CRT_UDATA_NAME, &udata) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for udata")
if(H5P_get(plist, H5L_CRT_UDATA_SIZE_NAME, &udata_size) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for udata size")
/* Create link */
if(H5L_create_ud(&link_loc, link_name, udata, udata_size, link_type, lcpl_id, lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_LINK, H5E_CANTINIT, FAIL, "unable to create link")
break;
}
default:
HGOTO_ERROR(H5E_LINK, H5E_CANTINIT, FAIL, "invalid link creation call")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_link_create() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_link_move
*
* Purpose: Renames an object within an HDF5 file and moves it to a new
* group. The original name SRC is unlinked from the group graph
* and then inserted with the new name DST (which can specify a
* new path for the object) as an atomic operation. The names
* are interpreted relative to SRC_LOC_ID and
* DST_LOC_ID, which are either file IDs or group ID.
*
* Return: Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
* April, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_link_move(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id,
const char *dst_name, hbool_t copy_flag, hid_t lcpl_id, hid_t lapl_id)
{
H5G_loc_t src_loc, *src_loc_p;
H5G_loc_t dst_loc, *dst_loc_p;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
if(src_loc_id != H5L_SAME_LOC && H5G_loc(src_loc_id, &src_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(dst_loc_id != H5L_SAME_LOC && H5G_loc(dst_loc_id, &dst_loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* Set up src & dst location pointers */
src_loc_p = &src_loc;
dst_loc_p = &dst_loc;
if(src_loc_id == H5L_SAME_LOC)
src_loc_p = dst_loc_p;
else if(dst_loc_id == H5L_SAME_LOC)
dst_loc_p = src_loc_p;
/* Move/Copy the link */
if(H5L_move(src_loc_p, src_name, dst_loc_p, dst_name, copy_flag, lcpl_id,
lapl_id, H5AC_dxpl_id) < 0)
HGOTO_ERROR(H5E_LINK, H5E_CANTMOVE, FAIL, "unable to move link")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_link_move() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_create
*
* Purpose: Creates an attribute on an object.
*
* Return: Success: attr id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_attr_create(hid_t loc_id, const char *attr_name, hid_t acpl_id, hid_t UNUSED aapl_id)
{
H5G_loc_t loc; /* Object location */
H5P_genplist_t *plist; /* Property list pointer */
hid_t type_id, space_id;
H5T_t *type; /* Datatype to use for attribute */
H5S_t *space; /* Dataspace to use for attribute */
void *location = NULL;
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/* Get the plist structure */
if(NULL == (plist = (H5P_genplist_t *)H5I_object(acpl_id)))
HGOTO_ERROR(H5E_ATOM, H5E_BADATOM, FAIL, "can't find object for ID")
/* get creation properties */
if(H5P_get(plist, H5A_CRT_TYPE_ID_NAME, &type_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for datatype id")
if(H5P_get(plist, H5A_CRT_SPACE_ID_NAME, &space_id) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for space id")
if(H5P_get(plist, H5A_CRT_LOCATION_NAME, &location) < 0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTGET, FAIL, "can't get property value for lcpl id")
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(0 == (H5F_INTENT(loc.oloc->file) & H5F_ACC_RDWR))
HGOTO_ERROR(H5E_ARGS, H5E_WRITEERROR, FAIL, "no write intent on file")
if(NULL == (type = (H5T_t *)H5I_object_verify(type_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a type")
if(NULL == (space = (H5S_t *)H5I_object_verify(space_id, H5I_DATASPACE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a data space")
if(NULL == location) { /* H5Acreate */
/* Go do the real work for attaching the attribute to the dataset */
if((ret_value = H5A_create(&loc, attr_name, type, space, acpl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to create attribute")
}
else { /* H5Acreate_by_name */
H5G_loc_t obj_loc; /* Object location */
H5G_name_t obj_path; /* Opened object group hier. path */
H5O_loc_t *oloc = (H5O_loc_t *)location;
/* Set up opened group location to fill in */
obj_loc.oloc = oloc;//&obj_oloc;
obj_loc.path = &obj_path;
H5G_name_reset(obj_loc.path);
/* Go do the real work for attaching the attribute to the dataset */
if((ret_value = H5A_create(&obj_loc, attr_name, type, space, acpl_id, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to create attribute")
if(H5G_loc_free(&obj_loc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_create() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_open
*
* Purpose: Opens a attr inside a native h5 file.
*
* Return: Success: attr id.
* Failure: NULL
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static hid_t
H5VL_native_attr_open(hid_t loc_id, void *location, const char *attr_name, hid_t UNUSED aapl_id)
{
H5G_loc_t loc; /* Object location */
H5A_t *attr = NULL; /* Attribute opened */
hid_t ret_value;
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
if(H5I_ATTR == H5I_get_type(loc_id))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "location is not valid for an attribute")
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
if(NULL != location) { /* H5Aopen_by_name */
H5O_loc_t *oloc = (H5O_loc_t *)location;
/* Read in attribute from object header */
if(NULL == (attr = H5O_attr_open_by_name(oloc, attr_name, H5AC_ind_dxpl_id)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to load attribute info from object header")
if(H5O_loc_free(oloc) < 0)
HDONE_ERROR(H5E_SYM, H5E_CANTRELEASE, FAIL, "can't free location")
}
else { /* H5Aopen */
/* Read in attribute from object header */
if(NULL == (attr = H5O_attr_open_by_name(loc.oloc, attr_name, H5AC_ind_dxpl_id)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to load attribute info from object header for attribute: '%s'", attr_name)
}
/* Finish initializing attribute */
if(H5A_open_common(&loc, attr) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTINIT, FAIL, "unable to initialize attribute")
/* Register the attribute and get an ID for it */
if((ret_value = H5I_register(H5I_ATTR, attr, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register attribute for ID")
done:
/* Cleanup on failure */
if(ret_value < 0)
if(attr && H5A_close(attr) < 0)
HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, FAIL, "can't close attribute")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_open() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_close
*
* Purpose: Closes an attribute.
*
* Return: Success: 0
* Failure: -1, attr not closed.
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_attr_close(hid_t attr_id)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
if(NULL == H5I_object_verify(attr_id, H5I_ATTR))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute")
/* Decrement references to that atom (and close it) */
if(H5I_dec_app_ref(attr_id) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_CANTDEC, FAIL, "can't close attribute")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_close() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_read
*
* Purpose: Reads in data from attribute.
*
* Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_attr_read(hid_t attr_id, hid_t dtype_id, void *buf)
{
H5A_t *attr; /* Attribute object for ID */
H5T_t *mem_type; /* Memory datatype */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
if(NULL == (attr = (H5A_t *)H5I_object_verify(attr_id, H5I_ATTR)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute")
if(NULL == (mem_type = (H5T_t *)H5I_object_verify(dtype_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
/* Go write the actual data to the attribute */
if((ret_value = H5A_read(attr, mem_type, buf, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_READERROR, FAIL, "unable to read attribute")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_read() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_write
*
* Purpose: Writes out data to attribute.
*
* Non-negative on success/Negative on failure
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_attr_write(hid_t attr_id, hid_t dtype_id, const void *buf)
{
H5A_t *attr; /* Attribute object for ID */
H5T_t *mem_type; /* Memory datatype */
herr_t ret_value; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
if(NULL == (attr = (H5A_t *)H5I_object_verify(attr_id, H5I_ATTR)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute")
if(NULL == (mem_type = (H5T_t *)H5I_object_verify(dtype_id, H5I_DATATYPE)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a datatype")
/* Go write the actual data to the attribute */
if((ret_value = H5A_write(attr, mem_type, buf, H5AC_dxpl_id)) < 0)
HGOTO_ERROR(H5E_ATTR, H5E_WRITEERROR, FAIL, "unable to write attribute")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_write() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_get
*
* Purpose: Gets certain information about an attribute
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* March, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_attr_get(hid_t attr_id, H5VL_attr_get_t get_type, va_list arguments)
{
H5A_t *attr;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
/* check arguments */
if(NULL == (attr = (H5A_t *)H5I_object_verify(attr_id, H5I_ATTR)))
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not an attribute")
switch (get_type) {
/* H5Aget_space */
case H5VL_ATTR_GET_SPACE:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5A_get_space(attr)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get space ID of attribute")
break;
}
/* H5Aget_type */
case H5VL_ATTR_GET_TYPE:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5A_get_type(attr)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get datatype ID of attribute")
break;
}
/* H5Aget_create_plist */
case H5VL_ATTR_GET_ACPL:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
if((*ret_id = H5A_get_create_plist(attr)) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get creation property list for attr")
break;
}
/* H5Aget_name */
case H5VL_ATTR_GET_NAME:
{
ssize_t *ret_val = va_arg (arguments, ssize_t *);
size_t buf_size = va_arg (arguments, size_t);
char *buf = va_arg (arguments, char *);
/* Call private function in turn */
if(0 > (*ret_val = H5A_get_name(attr, buf_size, buf)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTGET, FAIL, "can't get attribute name")
break;
}
/* H5Aget_info */
case H5VL_ATTR_GET_INFO:
{
H5A_info_t *ainfo = va_arg (arguments, H5A_info_t *);
if(H5A_get_info(attr, ainfo) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_CANTGET, FAIL, "can't get attribute info")
break;
}
case H5VL_ATTR_GET_STORAGE_SIZE:
{
hsize_t *ret = va_arg (arguments, hsize_t *);
/* Set return value */
*ret = attr->shared->data_size;
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't get this type of information from attr")
}
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_get() */
/*-------------------------------------------------------------------------
* Function: H5VL_native_attr_generic
*
* Purpose: Perform a plugin specific operation for an attribute
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Mohamad Chaarawi
* April, 2012
*
*-------------------------------------------------------------------------
*/
static herr_t
H5VL_native_attr_generic(hid_t loc_id, H5VL_attr_generic_t generic_type, va_list arguments)
{
H5A_t *attr = NULL; /* Attribute opened */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
switch (generic_type) {
/* H5Aopen_by_idx */
case H5VL_ATTR_OPEN_BY_IDX:
{
hid_t *ret_id = va_arg (arguments, hid_t *);
char *obj_name = va_arg (arguments, char *);
H5_index_t idx_type = va_arg (arguments, H5_index_t);
H5_iter_order_t order = va_arg (arguments, H5_iter_order_t);
hsize_t n = va_arg (arguments, hsize_t);
hid_t aapl_id = va_arg (arguments, hid_t);
hid_t lapl_id = va_arg (arguments, hid_t);
H5G_loc_t loc; /* Object location */
if(H5G_loc(loc_id, &loc) < 0)
HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "not a location")
/* Open the attribute in the object header */
if(NULL == (attr = H5A_open_by_idx(&loc, obj_name, idx_type, order, n, lapl_id, H5AC_ind_dxpl_id)))
HGOTO_ERROR(H5E_ATTR, H5E_CANTOPENOBJ, FAIL, "unable to open attribute")
/* Register the attribute and get an ID for it */
if((*ret_id = H5I_register(H5I_ATTR, attr, TRUE)) < 0)
HGOTO_ERROR(H5E_ATOM, H5E_CANTREGISTER, FAIL, "unable to register attribute for ID")
break;
}
default:
HGOTO_ERROR(H5E_VOL, H5E_CANTGET, FAIL, "can't recognize this operation type")
}
done:
/* Cleanup on failure */
if(H5VL_ATTR_OPEN_BY_IDX == generic_type && ret_value < 0)
if(attr && H5A_close(attr) < 0)
HDONE_ERROR(H5E_ATTR, H5E_CANTFREE, FAIL, "can't close attribute")
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5VL_native_attr_generic() */
|