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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by The HDF Group. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdfgroup.org/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from help@hdfgroup.org. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Purpose: Alacrity index routines.
*/
/****************/
/* Module Setup */
/****************/
/***********/
/* Headers */
/***********/
#include "H5private.h" /* Generic Functions */
#include "H5Xprivate.h" /* Index */
#include "H5Eprivate.h" /* Error handling */
#include "H5Iprivate.h" /* IDs */
#include "H5MMprivate.h" /* Memory management */
#include "H5Pprivate.h"
#include "H5FFprivate.h"
#include "H5RCprivate.h"
#include "H5TRprivate.h"
#include "H5Qprivate.h"
/* TODO using private headers but could use public ones */
#include <alacrity-types.h>
#include <alacrity-serialization.h>
#include <alacrity.h>
/****************/
/* Local Macros */
/****************/
/******************/
/* Local Typedefs */
/******************/
typedef struct H5X_alacrity_t {
hbool_t metadata_read;
ALMetadata metadata; /* Alacrity metadata */
ALEncoderConfig config; /* Alacrity config */
ALPartitionData output; /* Alacrity output */
hid_t opaque_type_id; /* Datatype used for index datasets */
hid_t metadata_id; /* Array for metadata */
hid_t data_id; /* Array for data */
hid_t index_id; /* Array for index data */
} H5X_alacrity_t;
typedef struct {
// true if the metadata file pointer from the parent ALStore still points the beginning of the
// partition's metadata (i.e., ALPartitionStoreReadMetadata() hasn't been called yet to move it)
_Bool metafp_unchanged;
uint64_t meta_offset;
uint64_t data_offset;
uint64_t index_offset;
_Bool iindexfp_changed;
_Bool cindexfp_changed;
} H5X__alacrity_partition_state_t;
typedef struct H5X__alacrity_query_data_t {
size_t num_elmts;
hid_t query_id;
hid_t space_query;
} H5X__alacrity_query_data_t;
/********************/
/* Local Prototypes */
/********************/
static void *
H5X_alacrity_create(hid_t file_id, hid_t dataset_id, hid_t xcpl_id,
hid_t xapl_id, size_t *metadata_size, void **metadata);
static herr_t
H5X_alacrity_remove(hid_t file_id, hid_t dataset_id, size_t metadata_size,
void *metadata);
static void *
H5X_alacrity_open(hid_t file_id, hid_t dataset_id, hid_t xapl_id,
size_t metadata_size, void *metadata);
static herr_t
H5X_alacrity_close(void *idx_handle);
static herr_t
H5X_alacrity_pre_update(void *idx_handle, hid_t dataspace_id, hid_t xxpl_id);
static herr_t
H5X_alacrity_post_update(void *idx_handle, const void *buf, hid_t dataspace_id,
hid_t xxpl_id);
static herr_t
H5X_alacrity_query(void *idx_handle, hid_t query_id, hid_t xxpl_id,
hid_t *dataspace_id);
static herr_t
H5X__alacrity_get_query_data_cb(void *elem, hid_t type_id, unsigned ndim,
const hsize_t *point, void *_udata);
/*********************/
/* Package Variables */
/*********************/
/*****************************/
/* Library Private Variables */
/*****************************/
/*******************/
/* Local Variables */
/*******************/
/* Alacrity index class */
const H5X_class_t H5X_ALACRITY[1] = {{
H5X_CLASS_T_VERS, /* (From the H5Xpublic.h header file) */
H5X_PLUGIN_ALACRITY, /* (Or whatever number is assigned) */
"alacrity index plugin", /* Whatever name desired */
H5X_TYPE_DATA_ELEM, /* This plugin operates on dataset elements */
H5X_alacrity_create, /* create */
H5X_alacrity_remove, /* remove */
H5X_alacrity_open, /* open */
H5X_alacrity_close, /* close */
H5X_alacrity_pre_update, /* pre_update */
H5X_alacrity_post_update, /* post_update */
H5X_alacrity_query /* query */
}};
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_create
*
* Purpose: This function creates a new instance of a alacrity plugin index.
*
* Return: Success: Pointer to the new index
* Failure: NULL
*
*------------------------------------------------------------------------
*/
static void *
H5X_alacrity_create(hid_t file_id, hid_t dataset_id, hid_t UNUSED xcpl_id,
hid_t xapl_id, size_t *metadata_size, void **metadata)
{
H5X_alacrity_t *alacrity = NULL;
hid_t space_id, trans_id;
hid_t dataset_type_id;
void *ret_value = NULL; /* Return value */
hsize_t dsize = 1, dmax = H5S_UNLIMITED;
size_t dataset_type_size;
ALDatatype alacrity_type;
size_t metadata_token_size, data_token_size, index_token_size;
size_t alacrity_metadata_size;
void *alacrity_metadata;
char *alacrity_metadata_ptr;
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_create\n");
if (NULL == (alacrity = (H5X_alacrity_t *) H5MM_malloc(sizeof(H5X_alacrity_t))))
HGOTO_ERROR(H5E_INDEX, H5E_NOSPACE, NULL, "can't allocate alacrity struct");
alacrity->metadata_read = FALSE;
/* Configure the encoder depending on the size of the data */
if (FAIL == (alacrity->opaque_type_id = H5Tcreate(H5T_OPAQUE, (size_t)1)))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTCREATE, NULL, "can't create type");
if (FAIL == H5Tset_tag(alacrity->opaque_type_id, "alacrity metadata type"))
HGOTO_ERROR(H5E_DATATYPE, H5E_CANTSET, NULL, "can't set tag to type");
if (FAIL == (dataset_type_id = H5Dget_type(dataset_id)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get type from dataset");
dataset_type_size = H5Tget_size(dataset_type_id);
printf("Type size: %zu\n", dataset_type_size);
alacrity_type = (dataset_type_size == 4) ? DATATYPE_FLOAT32 : DATATYPE_FLOAT64;
/* Configure encoder */
ALEncoderConfigure(&alacrity->config, 16, alacrity_type, ALCompressionIndex);
#ifdef H5_HAVE_INDEXING
if (FAIL == H5Pget_xapl_transaction(xapl_id, &trans_id))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get trans_id from xapl");
#endif
/* Create a dataspace with unlimited size */
if ((space_id = H5Screate_simple(1, &dsize, &dmax)) < 0)
HGOTO_ERROR(H5E_INDEX, H5E_CANTCREATE, NULL, "can't create dataspace");
/* Create metadata array with opaque type */
if (FAIL == (alacrity->metadata_id = H5Dcreate_anon_ff(file_id, alacrity->opaque_type_id,
space_id, H5P_DEFAULT, H5P_DEFAULT, trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCREATE, NULL, "can't create anonymous dataset");
/* Create data array with opaque type */
if (FAIL == (alacrity->data_id = H5Dcreate_anon_ff(file_id, alacrity->opaque_type_id,
space_id, H5P_DEFAULT, H5P_DEFAULT, trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCREATE, NULL, "can't create anonymous dataset");
/* Create index array with opaque type */
if (FAIL == (alacrity->index_id = H5Dcreate_anon_ff(file_id, alacrity->opaque_type_id,
space_id, H5P_DEFAULT, H5P_DEFAULT, trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCREATE, NULL, "can't create anonymous dataset");
/* Get tokens */
if (FAIL == H5Oget_token(alacrity->metadata_id, NULL, &metadata_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token size for anonymous dataset");
if (FAIL == H5Oget_token(alacrity->data_id, NULL, &data_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token size for anonymous dataset");
if (FAIL == H5Oget_token(alacrity->index_id, NULL, &index_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token size for anonymous dataset");
/* Make some space for the metadata (tokens + sizes) */
alacrity_metadata_size = metadata_token_size + data_token_size +
index_token_size + 3 * sizeof(size_t);
if (NULL == (alacrity_metadata = H5MM_malloc(alacrity_metadata_size)))
HGOTO_ERROR(H5E_INDEX, H5E_NOSPACE, NULL, "can't allocate token metadata");
alacrity_metadata_ptr = alacrity_metadata;
/* Encode metadata token info */
HDmemcpy(alacrity_metadata_ptr, &metadata_token_size, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == H5Oget_token(alacrity->metadata_id, alacrity_metadata_ptr, &metadata_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token for anonymous dataset");
alacrity_metadata_ptr += metadata_token_size;
/* Encode data token info */
HDmemcpy(alacrity_metadata_ptr, &data_token_size, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == H5Oget_token(alacrity->data_id, alacrity_metadata_ptr, &data_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token for anonymous dataset");
alacrity_metadata_ptr += data_token_size;
/* Encode index token info */
HDmemcpy(alacrity_metadata_ptr, &index_token_size, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == H5Oget_token(alacrity->index_id, alacrity_metadata_ptr, &index_token_size))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get token for anonymous dataset");
alacrity_metadata_ptr += index_token_size;
/* Metadata is token for anonymous dataset */
*metadata = alacrity_metadata;
*metadata_size = alacrity_metadata_size;
ret_value = alacrity;
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_create() */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_remove
*
* Purpose: This function removes the alacrity plugin index from the file.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5X_alacrity_remove(hid_t UNUSED file_id, hid_t UNUSED dataset_id, size_t UNUSED metadata_size,
void UNUSED *metadata)
{
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT_NOERR
printf("Calling H5X_alacrity_remove\n");
/* TODO Does not do anything */
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_remove() */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_open
*
* Purpose: This function opens an already existing alacrity index from a file.
*
* Return: Success: Pointer to the index
* Failure: NULL
*
*-------------------------------------------------------------------------
*/
static void *
H5X_alacrity_open(hid_t file_id, hid_t UNUSED dataset_id, hid_t xapl_id,
size_t metadata_size, void *metadata)
{
H5X_alacrity_t *alacrity = NULL;
hid_t trans_id = FAIL, rc_id;
uint64_t c_version;
void *ret_value = NULL; /* Return value */
char *alacrity_metadata_ptr = metadata;
size_t metadata_token_size, data_token_size, index_token_size;
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_open\n");
if (!metadata_size)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "NULL metadata size");
if (!metadata)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, NULL, "NULL metadata");
#ifdef H5_HAVE_INDEXING
if (FAIL == H5Pget_xapl_read_context(xapl_id, &rc_id))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, NULL, "can't get rc_id from xapl");
#endif
if (NULL == (alacrity = (H5X_alacrity_t *) H5MM_malloc(sizeof(H5X_alacrity_t))))
HGOTO_ERROR(H5E_INDEX, H5E_NOSPACE, NULL, "can't allocate alacrity struct");
alacrity->metadata_read = FALSE;
/* TODO do not need opaque type in open for now */
alacrity->opaque_type_id = FAIL;
/* TODO do that like this for now */
H5RCget_version(rc_id, &c_version);
trans_id = H5TRcreate(file_id, rc_id, c_version);
/* Decode metadata token info */
HDmemcpy(&metadata_token_size, alacrity_metadata_ptr, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == (alacrity->metadata_id = H5Oopen_by_token(alacrity_metadata_ptr,
trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTOPENOBJ, NULL, "can't open anonymous dataset");
alacrity_metadata_ptr += metadata_token_size;
/* Decode data token info */
HDmemcpy(&data_token_size, alacrity_metadata_ptr, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == (alacrity->data_id = H5Oopen_by_token(alacrity_metadata_ptr,
trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTOPENOBJ, NULL, "can't open anonymous dataset");
alacrity_metadata_ptr += data_token_size;
/* Decode index token info */
HDmemcpy(&index_token_size, alacrity_metadata_ptr, sizeof(size_t));
alacrity_metadata_ptr += sizeof(size_t);
if (FAIL == (alacrity->index_id = H5Oopen_by_token(alacrity_metadata_ptr,
trans_id, H5_EVENT_STACK_NULL)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTOPENOBJ, NULL, "can't open anonymous dataset");
alacrity_metadata_ptr += index_token_size;
ret_value = alacrity;
done:
if (FAIL != trans_id) H5TRclose(trans_id);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_open() */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_close
*
* Purpose: This function unregisters an index class.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5X_alacrity_close(void *idx_handle)
{
H5X_alacrity_t *alacrity = (H5X_alacrity_t *) idx_handle;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_close\n");
if (NULL == alacrity)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL index handle");
// ALPartitionDataDestroy(&alacrity->output);
/* Close anonymous dataset */
if (FAIL == H5Dclose_ff(alacrity->metadata_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCLOSEOBJ, FAIL, "can't close anonymous dataset for index");
if (FAIL == H5Dclose_ff(alacrity->data_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCLOSEOBJ, FAIL, "can't close anonymous dataset for index");
if (FAIL == H5Dclose_ff(alacrity->index_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCLOSEOBJ, FAIL, "can't close anonymous dataset for index");
if ((FAIL != alacrity->opaque_type_id) && (FAIL == H5Tclose(alacrity->opaque_type_id)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTCLOSEOBJ, FAIL, "can't close opaque type");
H5MM_free(alacrity);
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_close() */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_pre_update
*
* Purpose: This function unregisters an index class.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5X_alacrity_pre_update(void *idx_handle, hid_t UNUSED dataspace_id, hid_t UNUSED xxpl_id)
{
H5X_alacrity_t *alacrity = (H5X_alacrity_t *) idx_handle;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_pre_update\n");
if (NULL == alacrity)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL index handle");
/* Not needed here */
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_pre_update() */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_post_update
*
* Purpose: This function unregisters an index class.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5X_alacrity_post_update(void *idx_handle, const void *buf, hid_t dataspace_id,
hid_t xxpl_id)
{
H5X_alacrity_t *alacrity = (H5X_alacrity_t *) idx_handle;
hid_t trans_id;
hsize_t npoints;
hsize_t metadata_size, index_size, data_size;
void *metadata_buf = NULL;
memstream_t memstream; /* Alacrity Memstream */
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_post_update\n");
if (NULL == alacrity)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL index handle");
// if (FAIL == (file_space_id = H5Dget_space(alacrity->anon_id)))
// HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, FAIL, "can't get dataspace from dataset");
#ifdef H5_HAVE_INDEXING
if (FAIL == H5Pget_xxpl_transaction(xxpl_id, &trans_id))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, FAIL, "can't get trans_id from xxpl");
#endif
npoints = (hsize_t) H5Sget_select_npoints(dataspace_id);
printf("*** npoints: %zu\n", (size_t) npoints);
ALEncode(&alacrity->config, buf, npoints, &alacrity->output);
/* Get sizes */
metadata_size = ALGetMetadataSize(&alacrity->output.metadata);
data_size = ALGetDataSize(&alacrity->output.data,
&alacrity->output.metadata);
index_size = ALGetIndexSize(&alacrity->output.index,
&alacrity->output.metadata);
printf("*** Metadata size: %zu\n", (size_t) metadata_size);
printf("*** Data size: %zu\n", (size_t) data_size);
printf("*** Index size: %zu\n", (size_t) index_size);
/* Extend metadata dataset */
if (FAIL == H5Dset_extent_ff(alacrity->metadata_id, &metadata_size,
trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTSET, FAIL, "can't set extent");
if (FAIL == H5Dset_extent_ff(alacrity->data_id, &data_size,
trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTSET, FAIL, "can't set extent");
if (FAIL == H5Dset_extent_ff(alacrity->index_id, &index_size,
trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTSET, FAIL, "can't set extent");
// if (FAIL == (metadata_space_id = H5Dget_space(alacrity->metadata_id)))
// HGOTO_ERROR(H5E_INDEX, H5E_CANTSET, FAIL, "can't get dataspace ID");
/* Serialize the metadata */
metadata_buf = H5MM_malloc(metadata_size);
if (NULL == metadata_buf)
HGOTO_ERROR(H5E_INDEX, H5E_CANTALLOC, FAIL, "can't allocate index elements");
memstreamInit(&memstream, metadata_buf);
ALSerializeMetadata(&alacrity->output.metadata, &memstream);
if (FAIL == H5Dwrite_ff(alacrity->metadata_id, alacrity->opaque_type_id, H5S_ALL,
H5S_ALL, H5P_DEFAULT, memstream.buf, trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTUPDATE, FAIL, "can't update index metadata");
memstreamDestroy(&memstream, 0);
/* Write the data */
if (FAIL == H5Dwrite_ff(alacrity->data_id, alacrity->opaque_type_id, H5S_ALL,
H5S_ALL, H5P_DEFAULT, alacrity->output.data, trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTUPDATE, FAIL, "can't update index data");
/* Write the index */
if (FAIL == H5Dwrite_ff(alacrity->index_id, alacrity->opaque_type_id, H5S_ALL,
H5S_ALL, H5P_DEFAULT, alacrity->output.index, trans_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTUPDATE, FAIL, "can't update index data");
done:
H5MM_free(metadata_buf);
// if (metadata_space_id != FAIL) H5Sclose(metadata_space_id);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_post_update() */
/*-------------------------------------------------------------------------
* Function: H5X__alacrity_get_query_data_cb
*
* Purpose: This function unregisters an index class.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
//static herr_t
//H5X__alacrity_get_query_data_cb(void *elem, hid_t type_id, unsigned UNUSED ndim,
// const hsize_t *point, void *_udata)
//{
// H5X__alacrity_query_data_t *udata = (H5X__alacrity_query_data_t *)_udata;
// hbool_t result;
// herr_t ret_value = SUCCEED;
//
// FUNC_ENTER_NOAPI_NOINIT
//
// /* Apply the query */
// if (H5Qapply(udata->query_id, &result, type_id, elem) < 0)
// HGOTO_ERROR(H5E_QUERY, H5E_CANTCOMPARE, FAIL, "unable to apply query to data element");
//
// /* If element satisfies query, add it to the selection */
// if (result) {
// /* TODO remove that after demo */
// printf("Element |%d| matches query\n", *((int *) elem));
// udata->num_elmts++;
// if(H5Sselect_elements(udata->space_query, H5S_SELECT_APPEND, 1, point))
// HGOTO_ERROR(H5E_DATASPACE, H5E_CANTSET, FAIL, "unable to add point to selection");
// }
//
//done:
// FUNC_LEAVE_NOAPI(ret_value)
//} /* end H5X__alacrity_get_query_data_cb */
/*-------------------------------------------------------------------------
* Function: H5X_alacrity_query
*
* Purpose: This function unregisters an index class.
*
* Return: Non-negative on success/Negative on failure
*
*-------------------------------------------------------------------------
*/
static herr_t
H5X_alacrity_query(void *idx_handle, hid_t query_id, hid_t xxpl_id,
hid_t *dataspace_id)
{
H5X_alacrity_t *alacrity = (H5X_alacrity_t *) idx_handle;
H5X__alacrity_query_data_t udata;
bin_id_t start_bin, end_bin;
hid_t space_id, type_id;
hid_t rcxt_id;
size_t nelmts;
size_t elmt_size = 0, buf_size = 0;
void *buf = NULL;
herr_t ret_value = SUCCEED; /* Return value */
FUNC_ENTER_NOAPI_NOINIT
printf("Calling H5X_alacrity_query\n");
if (NULL == alacrity)
HGOTO_ERROR(H5E_ARGS, H5E_BADVALUE, FAIL, "NULL index handle");
#ifdef H5_HAVE_INDEXING
if (FAIL == H5Pget_xxpl_read_context(xxpl_id, &rcxt_id))
HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, FAIL, "can't get rcxt_id from xxpl");
#endif
if (!alacrity->metadata_read) {
memstream_t memstream; /* Alacrity Memstream */
void *metadata_buf;
hid_t metadata_space_id;
if (FAIL == (metadata_space_id = H5Dget_space(alacrity->metadata_id)))
HGOTO_ERROR(H5E_INDEX, H5E_CANTSET, FAIL, "can't get dataspace ID");
printf("**** npoints: %zu\n", H5Sget_select_npoints(metadata_space_id));
if (FAIL == H5Dread_ff(alacrity->metadata_id, alacrity->opaque_type_id, H5S_ALL,
H5S_ALL, H5P_DEFAULT, memstream.buf, rcxt_id, H5_EVENT_STACK_NULL))
HGOTO_ERROR(H5E_INDEX, H5E_CANTUPDATE, FAIL, "can't update index metadata");
memstreamInit(&memstream, metadata_buf);
ALDeserializeMetadata(&alacrity->metadata, &memstream);
memstreamDestroy(&memstream, 0);
}
/**
* First, find which bins are touched by the query (all elements in the
* query range will fall into these bins, however not all elements in these
* bins fall into the query range).
*/
// findBinRange1C(alacrity->metadata, query_id, &start_bin, &end_bin);
/* First findBinRange1C */
/* Second readIndex */
// if (FAIL == (type_id = H5Dget_type(alacrity->idx_anon_id)))
// HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, FAIL, "can't get type from index");
// if (FAIL == (space_id = H5Dget_space(alacrity->idx_anon_id)))
// HGOTO_ERROR(H5E_INDEX, H5E_CANTGET, FAIL, "can't get dataspace from index");
// if (0 == (nelmts = (size_t) H5Sget_select_npoints(space_id)))
// HGOTO_ERROR(H5E_DATASPACE, H5E_BADVALUE, FAIL, "invalid number of elements");
// if (0 == (elmt_size = H5Tget_size(type_id)))
// HGOTO_ERROR(H5E_DATATYPE, H5E_BADTYPE, FAIL, "invalid size of element");
//
// /* allocate buffer to hold data */
// buf_size = nelmts * elmt_size;
// if(NULL == (buf = H5MM_malloc(buf_size)))
// HGOTO_ERROR(H5E_INDEX, H5E_NOSPACE, FAIL, "can't allocate read buffer");
//
// /* read data from index */
// if (FAIL == H5Dread_ff(alacrity->idx_anon_id, type_id, H5S_ALL, space_id,
// H5P_DEFAULT, buf, rcxt_id, H5_EVENT_STACK_NULL))
// HGOTO_ERROR(H5E_INDEX, H5E_READERROR, FAIL, "can't read data");
//
// if(FAIL == (udata.space_query = H5Scopy(space_id)))
// HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to copy dataspace");
// if(H5Sselect_none(udata.space_query) < 0)
// HGOTO_ERROR(H5E_DATASPACE, H5E_CANTINIT, FAIL, "unable to reset selection");
//
// udata.num_elmts = 0;
// udata.query_id = query_id;
//
// /* iterate over every element and apply the query on it. If the
// query is not satisfied, then remove it from the query selection */
// if (H5Diterate(buf, type_id, space_id, H5X__alacrity_get_query_data_cb, &udata) < 0)
// HGOTO_ERROR(H5E_INDEX, H5E_CANTCOMPUTE, FAIL, "failed to compute buffer size");
//
// *dataspace_id = udata.space_query;
// printf("Created dataspace from index with %d elements\n",
// (int) H5Sget_select_npoints(*dataspace_id));
done:
H5MM_free(buf);
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5X_alacrity_query() */
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